####################################### ### Getting DRR000001 FASTQ file ####################################### # Google search by "DRR000001" https://trace.ddbj.nig.ac.jp/DRASearch/run?acc=DRR000001 # Click FASTQ button at top-right and move following URL ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/DRA000/DRA000001/DRX000001 # Download DRR000001 (400MB) wget ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001_1.fastq.bz2 wget ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/DRA000/DRA000001/DRX000001/DRR000001_2.fastq.bz2 # Unzipping *.bz2 file. it takes four minites. 1.7GB after unzipping. bzip2 -d DRR000001_1.fastq.bz2 #bunzip2 DRR000001_1.fastq.bz2 ####################################### ### Getting Kawaoka files ####################################### wget http://www.iu.a.u-tokyo.ac.jp/~kadota/bioinfo_ngs_sokushu_2014/kawaoka.zip unzip kawaoka.zip cd kawaoka iconv -f SJIS 20140911_4-4_kawaoka.txt > hoge.txt