1. Computation time for mapping (in second).
   ユーザ   システム       経過  
     30.08      18.63   24114.36 


2. Options used for mapping.
[1] "-m 1 --best --strata -v 2"


3. Alignment statistics.
                     seqlength   mapped unmapped
DEX_bio1tec1:genome  119667750 33888683  6533383
DEX_bio1tec2:genome  119667750 26972011  5153357
DEX_bio2tec1:genome  119667750 24521191  4882645
DEX_bio2tec2:genome  119667750 22590344  4511482
mock_bio1tec1:genome 119667750 33320200  6420915
mock_bio1tec2:genome 119667750 30194779  5924646
mock_bio2tec1:genome 119667750 32174231  6089521
mock_bio2tec2:genome 119667750 30632706  6050664


4. Gene annotation info.
TranscriptDb object:
| Db type: TranscriptDb
| Supporting package: GenomicFeatures
| Data source: TAIR10_GFF3_genes.gff
| Organism: NA
| miRBase build ID: NA
| transcript_nrow: 35386
| exon_nrow: 159647
| cds_nrow: 147494
| Db created by: GenomicFeatures package from Bioconductor
| Creation time: 2014-04-02 18:19:18 +0900 (Wed, 02 Apr 2014)
| GenomicFeatures version at creation time: 1.14.5
| RSQLite version at creation time: 0.11.4
| DBSCHEMAVERSION: 1.0


5. Session info.
R version 3.0.3 (2014-03-06)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Japanese_Japan.932  LC_CTYPE=Japanese_Japan.932   
[3] LC_MONETARY=Japanese_Japan.932 LC_NUMERIC=C                  
[5] LC_TIME=Japanese_Japan.932    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] BSgenome.Athaliana.TAIR.TAIR9_1.3.18
 [2] BSgenome_1.30.0                     
 [3] Biostrings_2.30.1                   
 [4] BiocInstaller_1.12.0                
 [5] GenomicFeatures_1.14.5              
 [6] AnnotationDbi_1.24.0                
 [7] Biobase_2.22.0                      
 [8] QuasR_1.2.2                         
 [9] Rbowtie_1.2.0                       
[10] GenomicRanges_1.14.4                
[11] XVector_0.2.0                       
[12] IRanges_1.20.7                      
[13] BiocGenerics_0.8.0                  

loaded via a namespace (and not attached):
 [1] biomaRt_2.18.0      bitops_1.0-6        DBI_0.2-7          
 [4] grid_3.0.3          hwriter_1.3         lattice_0.20-27    
 [7] latticeExtra_0.6-26 RColorBrewer_1.0-5  RCurl_1.95-4.1     
[10] Rsamtools_1.14.3    RSQLite_0.11.4      rtracklayer_1.22.7 
[13] ShortRead_1.20.0    stats4_3.0.3        tools_3.0.3        
[16] XML_3.98-1.1        zlibbioc_1.8.0