1. Computation time for mapping (in second).
   ユーザ   システム       経過  
     16.84      12.06   21846.98 


2. Options used for mapping.
[1] "-m 1 --best --strata -v 2"


3. Alignment statistics.
                     seqlength   mapped unmapped
DEX_bio1tec1:genome  119667750 33888683  6533383
DEX_bio1tec2:genome  119667750 26972011  5153357
DEX_bio2tec1:genome  119667750 24521191  4882645
DEX_bio2tec2:genome  119667750 22590344  4511482
mock_bio1tec1:genome 119667750 33320200  6420915
mock_bio1tec2:genome 119667750 30194779  5924646
mock_bio2tec1:genome 119667750 32174231  6089521
mock_bio2tec2:genome 119667750 30632706  6050664


4. Gene annotation info.
TranscriptDb object:
| Db type: TranscriptDb
| Supporting package: GenomicFeatures
| Data source: TAIR10_GFF3_genes.gff
| Organism: NA
| miRBase build ID: NA
| transcript_nrow: 35386
| exon_nrow: 159647
| cds_nrow: 147494
| Db created by: GenomicFeatures package from Bioconductor
| Creation time: 2014-05-03 05:43:47 +0900 (Sat, 03 May 2014)
| GenomicFeatures version at creation time: 1.16.0
| RSQLite version at creation time: 0.11.4
| DBSCHEMAVERSION: 1.0


5. Session info.
R version 3.1.0 (2014-04-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Japanese_Japan.932  LC_CTYPE=Japanese_Japan.932   
[3] LC_MONETARY=Japanese_Japan.932 LC_NUMERIC=C                  
[5] LC_TIME=Japanese_Japan.932    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] GenomicFeatures_1.16.0 AnnotationDbi_1.26.0   Biobase_2.24.0        
 [4] QuasR_1.4.0            Rbowtie_1.4.0          GenomicRanges_1.16.1  
 [7] GenomeInfoDb_1.0.2     Biostrings_2.32.0      XVector_0.4.0         
[10] IRanges_1.22.3         BiocGenerics_0.10.0   

loaded via a namespace (and not attached):
 [1] BatchJobs_1.2           BBmisc_1.5             
 [3] BiocInstaller_1.14.1    BiocParallel_0.6.0     
 [5] biomaRt_2.20.0          bitops_1.0-6           
 [7] brew_1.0-6              BSgenome_1.32.0        
 [9] codetools_0.2-8         DBI_0.2-7              
[11] digest_0.6.4            fail_1.2               
[13] foreach_1.4.2           GenomicAlignments_1.0.0
[15] grid_3.1.0              hwriter_1.3            
[17] iterators_1.0.7         lattice_0.20-29        
[19] latticeExtra_0.6-26     plyr_1.8.1             
[21] RColorBrewer_1.0-5      Rcpp_0.11.1            
[23] RCurl_1.95-4.1          Rsamtools_1.16.0       
[25] RSQLite_0.11.4          rtracklayer_1.24.0     
[27] sendmailR_1.1-2         ShortRead_1.22.0       
[29] stats4_3.1.0            stringr_0.6.2          
[31] tools_3.1.0             XML_3.98-1.1           
[33] zlibbioc_1.10.0