1. Computation time for mapping (in second).
   ユーザ   システム       経過  
      7.25      10.30   23216.55 


2. Options used for mapping.
[1] "-m 1 --best --strata -v 2"


3. Alignment statistics.
                 seqlength   mapped unmapped
Pro_rep1:genome 3137161264 23333855  8916950
Pro_rep2:genome 3137161264 23512357  8605608
Pro_rep3:genome 3137161264 20701023  7676045
Ras_rep1:genome 3137161264 13977369  5810387
Ras_rep2:genome 3137161264 20851165  7707632
Ras_rep3:genome 3137161264 18817036  8297576


4. Gene annotation info.
TranscriptDb object:
| Db type: TranscriptDb
| Supporting package: GenomicFeatures
| Data source: UCSC
| Genome: hg19
| Organism: Homo sapiens
| UCSC Table: ensGene
| Resource URL: http://genome.ucsc.edu/
| Type of Gene ID: Ensembl gene ID
| Full dataset: yes
| miRBase build ID: NA
| transcript_nrow: 204940
| exon_nrow: 584914
| cds_nrow: 280284
| Db created by: GenomicFeatures package from Bioconductor
| Creation time: 2014-03-28 10:06:36 +0900 (Fri, 28 Mar 2014)
| GenomicFeatures version at creation time: 1.14.0
| RSQLite version at creation time: 0.11.4
| DBSCHEMAVERSION: 1.0


5. Session info.
R version 3.0.2 (2013-09-25)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Japanese_Japan.932  LC_CTYPE=Japanese_Japan.932   
[3] LC_MONETARY=Japanese_Japan.932 LC_NUMERIC=C                  
[5] LC_TIME=Japanese_Japan.932    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] BSgenome.Hsapiens.UCSC.hg19_1.3.19 BSgenome_1.30.0                   
 [3] Biostrings_2.30.0                  GenomicFeatures_1.14.0            
 [5] AnnotationDbi_1.24.0               Biobase_2.22.0                    
 [7] QuasR_1.2.0                        Rbowtie_1.2.0                     
 [9] GenomicRanges_1.14.1               XVector_0.2.0                     
[11] IRanges_1.20.0                     BiocGenerics_0.8.0                

loaded via a namespace (and not attached):
 [1] BiocInstaller_1.12.0 biomaRt_2.18.0       bitops_1.0-6        
 [4] DBI_0.2-7            grid_3.0.2           hwriter_1.3         
 [7] lattice_0.20-24      latticeExtra_0.6-26  RColorBrewer_1.0-5  
[10] RCurl_1.95-4.1       Rsamtools_1.14.1     RSQLite_0.11.4      
[13] rtracklayer_1.22.0   ShortRead_1.20.0     stats4_3.0.2        
[16] tools_3.0.2          XML_3.98-1.1         zlibbioc_1.8.0