[1] "1. Computation time for mapping (in second)."
   ユーザ   システム       経過  
      8.21      12.31   32695.23 
[1] "2. Options used for mapping."
[1] "-m 1 --best --strata"
[1] "3. Alignment statistics."
                 seqlength   mapped unmapped
Pro_rep1:genome 3137161264 22357449  9893785
Pro_rep2:genome 3137161264 22521660  9596908
Pro_rep3:genome 3137161264 19830555  8547177
Ras_rep1:genome 3137161264 13422491  6365829
Ras_rep2:genome 3137161264 19949830  8609042
Ras_rep3:genome 3137161264 17597793  9516886
[1] "4. Gene annotation info."
TranscriptDb object:
| Db type: TranscriptDb
| Supporting package: GenomicFeatures
| Data source: UCSC
| Genome: hg19
| Organism: Homo sapiens
| UCSC Table: ensGene
| Resource URL: http://genome.ucsc.edu/
| Type of Gene ID: Ensembl gene ID
| Full dataset: yes
| miRBase build ID: NA
| transcript_nrow: 203288
| exon_nrow: 582164
| cds_nrow: 279718
| Db created by: GenomicFeatures package from Bioconductor
| Creation time: 2013-10-18 18:03:25 +0900 (Fri, 18 Oct 2013)
| GenomicFeatures version at creation time: 1.12.4
| RSQLite version at creation time: 0.11.4
| DBSCHEMAVERSION: 1.0
[1] "5. Session info."
R version 3.0.2 (2013-09-25)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=Japanese_Japan.932  LC_CTYPE=Japanese_Japan.932   
[3] LC_MONETARY=Japanese_Japan.932 LC_NUMERIC=C                  
[5] LC_TIME=Japanese_Japan.932    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
[1] GenomicFeatures_1.12.4 AnnotationDbi_1.22.6   Biobase_2.20.1        
[4] QuasR_1.0.9            Rbowtie_1.0.3          GenomicRanges_1.12.5  
[7] IRanges_1.18.4         BiocGenerics_0.6.0    

loaded via a namespace (and not attached):
 [1] BiocInstaller_1.10.4 biomaRt_2.16.0       Biostrings_2.28.0   
 [4] bitops_1.0-6         BSgenome_1.28.0      DBI_0.2-7           
 [7] grid_3.0.2           hwriter_1.3          lattice_0.20-24     
[10] RCurl_1.95-4.1       Rsamtools_1.12.4     RSQLite_0.11.4      
[13] rtracklayer_1.20.4   ShortRead_1.18.0     stats4_3.0.2        
[16] tools_3.0.2          XML_3.98-1.1         zlibbioc_1.6.0