FastQCFastQC Report
Thu 15 Aug 2019
SRR6322567_1.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6322567_1.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1795874
Sequences flagged as poor quality0
Sequence length251
%GC47

[WARN]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC168290.9370924686253045TruSeq Adapter, Index 6 (100% over 50bp)
GCCGTTTTCTTCCCGGATCGTTGAAACCCGCTGCTAGCTATGTGGGCCCA98870.5505397371975985No Hit
GTTCGCGCTTCCTTAACTATCAGTTGACCGAACAGTATCGAGACCTTGGG82470.45921929934950895No Hit
GCGGGCAGAACCGTTTTAACCGACGCACGGCATAGCTAACCGGTGGCGCA81010.4510895530532765No Hit
CAATGATATTGCTACTTTAGATGAAAAACAATGAAACAAGTCAAGGAAGA71280.39690980547633076No Hit
CTGCTACATGCGGCTCTACACCCATAGCCGATTTATTTAAAATTCGCTGC58480.325635317399773No Hit
GCCCAATGATATTGCTACTTTAGATGAAAAACAATGAAACAAGTCAAGGA56420.314164579474952No Hit
CTCGACATTGCTTTTCGCGCATGCGGTGCACCTCGGAGGCTCGGCTCCGT55970.31165883575351055No Hit
CCTGCATGTAGATCCCTATAAGCCATGTTTTGTTCCAGAACCTGTTCAGG52050.28983102378006476No Hit
CGCTTCCTTAACTATCAGTTGACCGAACAGTATCGAGACCTTGGGACCGG47980.2671679638994718No Hit
CGGGCAGAACCGTTTTAACCGACGCACGGCATAGCTAACCGGTGGCGCAT44310.24673223177127127No Hit
TCTCGACATTGCTTTTCGCGCATGCGGTGCACCTCGGAGGCTCGGCTCCG36200.20157316159151475No Hit
CCGTTTTCTTCCCGGATCGTTGAAACCCGCTGCTAGCTATGTGGGCCCAG33770.18804214549573076No Hit
CGCGCTTCCTTAACTATCAGTTGACCGAACAGTATCGAGACCTTGGGACC32190.17924420087378068No Hit
CTTCTAACTCACACCAAAAAGAGGCGAGATCACATGGCATCATTGAGCAA27140.15112418799982627No Hit
CCCTGCTACATGCGGCTCTACACCCATAGCCGATTTATTTAAAATTCGCT24290.1352544777640302No Hit
CCCAATGATATTGCTACTTTAGATGAAAAACAATGAAACAAGTCAAGGAA24200.1347533290197419No Hit
CGCCCAATGATATTGCTACTTTAGATGAAAAACAATGAAACAAGTCAAGG23890.13302715001163778No Hit
TCGCGCTTCCTTAACTATCAGTTGACCGAACAGTATCGAGACCTTGGGAC22520.12539855245969372No Hit
CGATAAGCGGGCAGAACCGTTTTAACCGACGCACGGCATAGCTAACCGGT20250.11275846746486669No Hit
TTCTAACTCACACCAAAAAGAGGCGAGATCACATGGCATCATTGAGCAAA18020.10034111524527889No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)