BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit [Mycoplasma pneumoniae M129] (380 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072661.1| DNA polymerase III, subunit beta (dnaN) [Mycopl... 516 e-148 >ref|NP_072661.1| DNA polymerase III, subunit beta (dnaN) [Mycoplasma genitalium G-37] Length = 364 Score = 516 bits (1328), Expect = e-148, Method: Compositional matrix adjust. Identities = 253/358 (70%), Positives = 309/358 (86%) Query: 23 SNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAENIDVLEEGEVIVKGKIFSELIN 82 SNNK+KP+HSY LIEA EKEINFYANNEYFS KC L +NID+LE+G +IVKGKIF++LIN Sbjct: 7 SNNKIKPHHSYFLIEAKEKEINFYANNEYFSVKCNLNKNIDILEQGSLIVKGKIFNDLIN 66 Query: 83 GIKEDIITIQEKDQTLLVKTKKTNINLNTIDKKEFPRIRFNQNVDLKEFDELKIQHSLLT 142 GIKE+IITIQEKDQTLLVKTKKT+INLNTI+ EFPRIRFN+ DL EF++ KI +SLL Sbjct: 67 GIKEEIITIQEKDQTLLVKTKKTSINLNTINVNEFPRIRFNEKNDLSEFNQFKINYSLLV 126 Query: 143 KGLKKIAHAVSTFRESTRKFNGVNFNGSNGKQIFLEASDSYKLSVYEIKQKTDPFNFIVE 202 KG+KKI H+VS RE + KFNGVNFNGSNGK+IFLEASD+YKLSV+EIKQ+T+PF+FI+E Sbjct: 127 KGIKKIFHSVSNNREISSKFNGVNFNGSNGKEIFLEASDTYKLSVFEIKQETEPFDFILE 186 Query: 203 TNLLSFINSFNPEGGDLISIFFRKEHKDDLSTELLIKLDNFLINYTSINESFPRVMQLFD 262 +NLLSFINSFNPE I ++RK++KD STE+LI +DNF+I+YTS+NE FP V F+ Sbjct: 187 SNLLSFINSFNPEEDKSIVFYYRKDNKDSFSTEMLISMDNFMISYTSVNEKFPEVNYFFE 246 Query: 263 FEPETKVTIQKNELKDALQRILTLAQNERFFLCDMQVTNSHLKINSNVQNIGASLEEVTC 322 FEPETK+ +QKNELKDALQRI TLAQNER FLCDMQ+ +S LKI + V NIG SLEE++C Sbjct: 247 FEPETKIVVQKNELKDALQRIQTLAQNERTFLCDMQINSSELKIRAIVNNIGNSLEEISC 306 Query: 323 LKFEGHKLNIAVNALSLLEHIDSFDTDEIELYFQGSNKYFLISSNNEPELKEILVPSK 380 LKFEG+KLNI+ N SLL+HI+SF+++EI FQG++KYFLI+S +EPELK+ILVPS+ Sbjct: 307 LKFEGYKLNISFNPSSLLDHIESFESNEINFDFQGNSKYFLITSKSEPELKQILVPSR 364 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507741|ref|NP_109690.1| similar to j-domain of DnaJ [Mycoplasma pneumoniae M129] (309 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072662.1| dnaJ-like protein [Mycoplasma genitalium G-37] 437 e-125 >ref|NP_072662.1| dnaJ-like protein [Mycoplasma genitalium G-37] Length = 310 Score = 437 bits (1124), Expect = e-125, Method: Compositional matrix adjust. Identities = 206/309 (66%), Positives = 257/309 (83%), Gaps = 1/309 (0%) Query: 1 MTLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEY 60 M LYDLLELP TA+++EIK AYKRLAKRYHPD+NK G+ TFV+INNAY++LSD QK +Y Sbjct: 1 MNLYDLLELPTTASIKEIKIAYKRLAKRYHPDVNKLGSQTFVEINNAYSILSDPNQKEKY 60 Query: 61 DAMLRFSEFEDRVKRLDFSIKWHEQFMEELQFHHNWDFDFIRNREYTQPTP-TNNKYSSF 119 D+ML+ ++F++R+K LD S++WHE FMEEL+ W+FDF + E +P T NKY+SF Sbjct: 61 DSMLKVNDFQNRIKNLDISVRWHENFMEELELRKTWEFDFFSSDEDFFYSPFTKNKYASF 120 Query: 120 LDKDVSLAFYQLYSKGKLDFDLEDTLLRRHSIKQAFLKGKKLNDVLKEQYNYLGWLEAKR 179 LDKDVSLAF+QLYSKGK+D LE +LL+R +K+A + K +V+KEQYNY GW+EAKR Sbjct: 121 LDKDVSLAFFQLYSKGKIDHQLEKSLLKRRDVKEACQQNKNFIEVIKEQYNYFGWIEAKR 180 Query: 180 YFNIDVEIELTPKEVREGGVVNLPLKIKVISNNYPGQMWYELNKNYSFRLLWDIKNGEVA 239 YFNI+VE+ELT +E+R+ VVNLPLKIKVI+N++P Q+WYE+ KNYSFRL WDIKNGE+A Sbjct: 181 YFNINVELELTQREIRDRDVVNLPLKIKVINNDFPNQLWYEIYKNYSFRLSWDIKNGEIA 240 Query: 240 EFFGKGNRALGWRGDLIVRMRIVDKIKKRLRIFSSHFEQDKTKLWFLVPQDKQDNPNKWV 299 EFF KGNRALGW+GDLIVRM++V+K+ KRLRIFSS FE DK+KLWFLVP DKQ NPNK V Sbjct: 241 EFFNKGNRALGWKGDLIVRMKVVNKVNKRLRIFSSFFENDKSKLWFLVPNDKQSNPNKGV 300 Query: 300 FDYKTHEFI 308 F+YKT FI Sbjct: 301 FNYKTQHFI 309 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507742|ref|NP_109691.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129] (650 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072663.1| DNA gyrase subunit B (gyrB) [Mycoplasma genital... 1184 0.0 ref|NP_072865.1| topoisomerase IV subunit B (parE) [Mycoplasma g... 516 e-148 >ref|NP_072663.1| DNA gyrase subunit B (gyrB) [Mycoplasma genitalium G-37] Length = 650 Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 565/650 (86%), Positives = 605/650 (93%) Query: 1 MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFA 60 ME+NNK YDSSSIK+LEGLEAVRKRPGMYIGSTGEEGLHHMIWEI+DNSIDEAMGGFA Sbjct: 1 MEENNKANIYDSSSIKVLEGLEAVRKRPGMYIGSTGEEGLHHMIWEIVDNSIDEAMGGFA 60 Query: 61 STVKLTLKDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLH 120 S VKLTL+DNFVT VEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLH Sbjct: 61 SFVKLTLEDNFVTRVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLH 120 Query: 121 GVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPDFT 180 GVGASVVNALSSSFKVWV R++++YFL+F +GG+VIGDLV EG +KEHGT VEFVPDF+ Sbjct: 121 GVGASVVNALSSSFKVWVFRQNKKYFLSFSDGGKVIGDLVQEGNSEKEHGTIVEFVPDFS 180 Query: 181 VMEKSDYKQTVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNNEK 240 VMEKSDYKQTVI SRLQQLAFLNKGI+IDFVD R+QNPQSFSWKYDGGLV+YIHHLNNEK Sbjct: 181 VMEKSDYKQTVIVSRLQQLAFLNKGIRIDFVDNRKQNPQSFSWKYDGGLVEYIHHLNNEK 240 Query: 241 EPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVE 300 EPLF ++I EKT+TVK+V+RDE+YT+KVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVE Sbjct: 241 EPLFNEVIADEKTETVKAVNRDENYTVKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVE 300 Query: 301 GFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLGNT 360 GFRNALVKIINRFAVENKFLK++DEKI RDD+CEGLTAIISIKHPNPQYEGQTKKKLGNT Sbjct: 301 GFRNALVKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNPQYEGQTKKKLGNT 360 Query: 361 EVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLXXXXXXXXXXXXXLTRRKSPFDSGSL 420 EVRPLVNS+VSEIFERFMLENPQEANAIIRKTLL LTRRKSPFDSGSL Sbjct: 361 EVRPLVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSL 420 Query: 421 PGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQIFN 480 PGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKS+FEQIFN Sbjct: 421 PGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSNFEQIFN 480 Query: 481 NVEISALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIXXXXXXXXXXXMYPLVEQ 540 N EISALVMA+GCGIKPDFELEKLRY+KI+IMTDADVDGAHI MYPLVEQ Sbjct: 481 NAEISALVMAIGCGIKPDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFRFMYPLVEQ 540 Query: 541 GNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLWETT 600 GNI+IAQPPLYKVSYS+KDLYM TDVQLE+WK Q+PN+K+ LQRYKGLGEMDA+QLWETT Sbjct: 541 GNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQNPNVKFGLQRYKGLGEMDALQLWETT 600 Query: 601 MDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEQNARNVKNIDI 650 MDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIE+NAR+VKNIDI Sbjct: 601 MDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEKNARSVKNIDI 650 >ref|NP_072865.1| topoisomerase IV subunit B (parE) [Mycoplasma genitalium G-37] Length = 633 Score = 516 bits (1329), Expect = e-148, Method: Compositional matrix adjust. Identities = 286/638 (44%), Positives = 397/638 (62%), Gaps = 22/638 (3%) Query: 10 YDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFASTVKLTLKD 69 Y +++IKIL+GL+AV+KRPGMYIGST +GLHHM+WEI+ NS+DE + G+A+ + +TL Sbjct: 5 YSATNIKILKGLDAVKKRPGMYIGSTDSKGLHHMLWEILANSVDEVLAGYATNITVTLDL 64 Query: 70 NFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLHGVGASVVNA 129 N V DDGRGIP +IH +N ST++TVFT LHAGGKFD+ SYK++GGLHGVGASVVNA Sbjct: 65 NNTITVSDDGRGIPYEIHQDSNISTIDTVFTFLHAGGKFDDQSYKLAGGLHGVGASVVNA 124 Query: 130 LSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPDFTVMEKSDYKQ 189 LS +V V R Q Y + GG++I G HGT V F D V +K+ + Sbjct: 125 LSDHLEVTVKRNGQIYQSVYQAGGKIIQKAKKIGDTT-SHGTTVSFHADPKVFKKAQFDS 183 Query: 190 TVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNNEKEPLFEDIIF 249 +I SRL++L+FL +++ F D++ F GLVQ++ +NN E L Sbjct: 184 NIIKSRLKELSFLFAKLKLTFTDQKTNKTTVFF--STSGLVQFLDEINNTVETL------ 235 Query: 250 GEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKI 309 G+KT + + E I+VEV FQ+N++ ++I SF N+I T EGG+H GF A+ + Sbjct: 236 GQKT-----LIKGEKDGIEVEVVFQFNQSDQETILSFANSIKTFEGGSHENGFCLAISDV 290 Query: 310 INRFAVENKFLKETDEKITRDDICEGLTAIISIKHP--NPQYEGQTKKKLGNTEVRPLVN 367 IN + + LKE D+ +I +GL AII + P N +EGQTK KL + EV+ +V Sbjct: 291 INSYCRKYNLLKEKDKNFQLSEIRQGLNAIIKVNLPEKNIAFEGQTKSKLFSKEVKNVVY 350 Query: 368 SIVSEIFERFMLENPQEANAIIRKTLLXXXXXXXXXXXXXLTRR-KSPFDSGSLPGKLAD 426 +V + + +F+ N +A II K L L + SP L GKLA Sbjct: 351 ELVQQHYFQFLERNNNDAKLIIDKLLNARKIKEQIKQQRELKKSLSSPQKEKILFGKLAP 410 Query: 427 CTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK-SHFEQIFNNVEIS 485 C T+ S EL+IVEGDSAGGTAK GRDR FQAILPLRGK+LNVEK ++ ++ N EI Sbjct: 411 CQTKKTSEKELFIVEGDSAGGTAKMGRDRIFQAILPLRGKVLNVEKINNKKEAITNEEIL 470 Query: 486 ALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIXXXXXXXXXXXMYPLVEQGNIYI 545 L+ +G GI +F ++ L+Y KIIIMTDAD DGAHI M PL+E G++Y+ Sbjct: 471 TLIFCIGTGILTNFNIKDLKYGKIIIMTDADNDGAHIQILLLTFFYRYMQPLIELGHVYL 530 Query: 546 AQPPLYKVSYSNKDL--YMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLWETTMDP 603 A PPLYK+ ++ Y+ +D++LE K + N + LQRYKGLGEM+A QLW+TTM+P Sbjct: 531 ALPPLYKLETKDRKTVKYLWSDLELESVKLKLNN--FTLQRYKGLGEMNADQLWDTTMNP 588 Query: 604 KVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEQN 641 R L++V ++D A+K ++ MG++ R+ +IE N Sbjct: 589 TTRKLVQVKLDDLINAEKQINIFMGEKSDLRKHWIEAN 626 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129] (839 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072664.1| DNA gyrase subunit A (gyrA) [Mycoplasma genital... 1330 0.0 ref|NP_072866.1| topoisomerase IV, subunit A (parC) [Mycoplasma ... 366 e-103 >ref|NP_072664.1| DNA gyrase subunit A (gyrA) [Mycoplasma genitalium G-37] Length = 836 Score = 1330 bits (3442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 664/839 (79%), Positives = 712/839 (84%), Gaps = 3/839 (0%) Query: 1 MAKQQDQIDKIRQELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRV 60 MAKQQDQ+DKIR+ L S +K+ISL++ELERSFMEYAMSVIVARALPDARDGLKPVHRRV Sbjct: 1 MAKQQDQVDKIRENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRV 60 Query: 61 LYGAYTGGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGN 120 LYGAY GGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGN Sbjct: 61 LYGAYIGGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGN 120 Query: 121 FGSIDGDRPAAQRYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLA 180 FGSIDGDRPAAQRYTEARLSKLA ELL+DIDKDTVDF+ANYDGEE+EPTVLPAAFPNLLA Sbjct: 121 FGSIDGDRPAAQRYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLA 180 Query: 181 NGSSGIAVGMSTSIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKG 240 NGSSGIAVGMSTSIPSHNLSELI GLI+LIDNP CT +LL VIKGPDFPTGANIIYTKG Sbjct: 181 NGSSGIAVGMSTSIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKG 240 Query: 241 IESYFETGKGNVVIRSKVSIEQLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIA 300 IESYFETGKGNVVIRSKV IEQL TR+ALVVTEIPYMVNKT+LIEKIVELVKAEEI+GIA Sbjct: 241 IESYFETGKGNVVIRSKVEIEQLQTRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIA 300 Query: 301 DIRDESSREGIRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQA 360 DIRDESSREGIRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAP LLNMKQA Sbjct: 301 DIRDESSREGIRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQA 360 Query: 361 LTVYLEHQLDVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEAL 420 L VYL+HQ+DVL+RKT+F L K QER+HILSGLLIAALNIDEV+AIIKKSANNQ A+ L Sbjct: 361 LEVYLDHQIDVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTL 420 Query: 421 HERFGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADXXXXXXXXXX 480 + +F LDEIQA+AVLDMRLRSLSVLEVNKLQTEQ+ELK IEFC++VLAD Sbjct: 421 NTKFKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKE 480 Query: 481 XXXXINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGYLKRIGVDAYNLQHRG 540 IN+QFGD RRSEILY ISE+IDDE LI ENVVITMSTNGYLKRIGVDAYNLQHRG Sbjct: 481 ELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGYLKRIGVDAYNLQHRG 540 Query: 541 GVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLI 600 GVGVKGLTTY DDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP GFRTNKGIPAVNLI Sbjct: 541 GVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLI 600 Query: 601 KIDKDEKICALISVNDYQNGYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFS 660 KI+KDE+IC+L+SVN+Y +GYFFFCTKNG +KRTSL+EF NILS GKRAI F +ND L+S Sbjct: 601 KIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKRAISFDDNDTLYS 660 Query: 661 VIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQCEFVXXXXXXXXXXXX 720 VI+T G D+IFIGST GFVVRFHE+ +R LSR A GV GI+LN+ EFV Sbjct: 661 VIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGVFGISLNKGEFVNGLSTSSNGSLL 720 Query: 721 XXXXXXXIGKLTSIDKYRLTKRNAKGVKTLRXXXXXXXXXXXXXXFGNEDLLMISSAGKI 780 IGKLTSIDKYRLTKRNAKGVKTLR FGNEDLLMISSAGKI Sbjct: 721 LSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRTGPVVTTTTVFGNEDLLMISSAGKI 780 Query: 781 VRISLEQLSEQRKNTSGVXXXXXXXXXXXXTVXXXXXXXXXXXXXXXXXDDVGSKQITQ 839 VR SL++LSEQ KNTSGV V +DVGSKQITQ Sbjct: 781 VRTSLQELSEQGKNTSGVKLIRLKDNERLERV---TIFKEELEDKEMQLEDVGSKQITQ 836 >ref|NP_072866.1| topoisomerase IV, subunit A (parC) [Mycoplasma genitalium G-37] Length = 781 Score = 366 bits (940), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/712 (32%), Positives = 378/712 (53%), Gaps = 32/712 (4%) Query: 8 IDKIRQELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTG 67 +D+ L Q AI+ + SF +YA +I RALPD RDGLKPV RR+LYG + Sbjct: 1 MDQKNNNLFQKAIEEV-----FAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQM 55 Query: 68 GMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGD 127 G+ P+KKSAR VG++M K+HPHGD +IYD + RM+Q + + + HGN GS+DGD Sbjct: 56 GLKPTTPYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGD 115 Query: 128 RPAAQRYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIA 187 AA RYTE RLS ELL+DIDK V F+ N+D E+EPTVLP PNL NG+SGIA Sbjct: 116 NAAAMRYTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIA 175 Query: 188 VGMSTSIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFET 247 G +T+I HN +EL+ L L ID P+C + +L ++KGPDFPTG N+ + K + ++ Sbjct: 176 AGYATNIAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQA 235 Query: 248 GKGNVVIRSKVSIEQLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESS 307 GKG +I++K + + + +T+IPY K +++++I E++ +++ I + D S Sbjct: 236 GKGKFIIQAKYEVNK--NLNQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSD 293 Query: 308 REGIRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEH 367 R GIR++I+ K E ++ LFK T+LQV F +N + P + + L +L+ Sbjct: 294 RNGIRIIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKF 353 Query: 368 QLDVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLD 427 +++I K ++ L+ +R I+ GL+ A ID++I +I+ + + A E L + F Sbjct: 354 CHELIINKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFT 413 Query: 428 EIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADXXXXXXXXXXXXXXINE 487 QA A++ +RL L+ ++ +L EQ EL+ + +Q++A + Sbjct: 414 FNQAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKK 473 Query: 488 QFGDPRRSEILYGISE-DIDDEDLITQEN--VVITMSTNGYLKRIGVDAYNLQHRGGVGV 544 QF RRS+I I++ +++ +LI + V+IT + N + + + Sbjct: 474 QFHQQRRSQICGFINQKKVEESELIENKTYGVLITKAGNYH-----------KFESNQLL 522 Query: 545 KGLTTYTDDSISQLLVCS-THSDLLFF-TDKGKVYRIRAHQIPPGFRTNKGIPAVNLIK- 601 K T + +S + + + ++D +F T G + I +++ F + + ++ K Sbjct: 523 KSTTDFKSESDTIIFAQTIANTDQIFIVTSLGNIINIPVYKL--AFNSKNKLASLVSKKP 580 Query: 602 -IDKDEKICALISVNDYQNGYFFFCTKNGTIKRTSLSEFANILSI-GKRAILFKENDVLF 659 + + E I + ++N +K G +KR L++ NI + I ++ D L Sbjct: 581 ILLEYETIVFVGTMNSVNQPILVLTSKLGMVKRIDLTKL-NIKPLKATLCISLRDKDHLV 639 Query: 660 SVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINL---NQCEFV 708 S I + S + FH + + +S MGV G+ L +Q +FV Sbjct: 640 SAFLQQDDKLICLVSDHNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFV 691 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase [Mycoplasma pneumoniae M129] (420 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072665.1| seryl-tRNA synthetase (serS) [Mycoplasma genita... 669 0.0 >ref|NP_072665.1| seryl-tRNA synthetase (serS) [Mycoplasma genitalium G-37] Length = 417 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/416 (76%), Positives = 357/416 (85%) Query: 1 MLDRNKLRNNLDFFKKKLVERGVSESQFEAYVQADKAMRKLLHQIELANQKQTLLAQQVA 60 MLD NKLRNN DFFKKKL+ER V+E ++Q DK MRK L Q+ELANQKQ+LLA+QVA Sbjct: 1 MLDPNKLRNNYDFFKKKLLERNVNEQLLNQFIQTDKLMRKNLQQLELANQKQSLLAKQVA 60 Query: 61 KKKGDPXXXXXXXXXXXXXXXXNIAFKEAETLSQELLLNLPNIADESVPVGRDETANLEL 120 K+K + N A+K+++ +SQ+LLLN PNIA ESVPVG++E+ANLEL Sbjct: 61 KQKDNKKLLAESKELKQKIENLNNAYKDSQNISQDLLLNFPNIAHESVPVGKNESANLEL 120 Query: 121 LKEGRKPVFDFTPLPHWELCERLQLVAFDKATKLTGARFVAYTDKAAKLLRAIASLMIDL 180 LKEGRKPVFDF PLPH ELCE+L LVAFDKATK++G RFVAYTDKAAKLLRAI +LMIDL Sbjct: 121 LKEGRKPVFDFKPLPHRELCEKLNLVAFDKATKISGTRFVAYTDKAAKLLRAITNLMIDL 180 Query: 181 NKNKYQEWNVPVIVNETSLTGTGQLPKFKDDVFKLENTRYYLSPTLEVQLANLHANEIFT 240 NK+KYQEWN+PV++NE SL TGQLPKFKDDVFKLENTRYYLSPTLEVQL NLHANEIF Sbjct: 181 NKSKYQEWNLPVVINELSLRSTGQLPKFKDDVFKLENTRYYLSPTLEVQLINLHANEIFN 240 Query: 241 EGELPKYYTATGVNFRQEAGSAGKQTKGTIRLHQFQKVELVKFCKPSEAIHELEEMTRDA 300 E +LPKYYTATG+NFRQEAGSAGKQTKGTIRLHQFQK ELVKFCKP AI+ELE M RDA Sbjct: 241 EEDLPKYYTATGINFRQEAGSAGKQTKGTIRLHQFQKTELVKFCKPENAINELEAMVRDA 300 Query: 301 EQILLELKIPFRRLLLCSGDMGFSAQKTYDLEVWMAGCNEYREVSSCSSCGDFQARRAMI 360 EQIL LK+PFRRLLLC+GDMGFSA+KTYDLEVWMA NEYREVSSCSSCGDFQARRAMI Sbjct: 301 EQILKALKLPFRRLLLCTGDMGFSAEKTYDLEVWMAASNEYREVSSCSSCGDFQARRAMI 360 Query: 361 RYKDLTTGKNTYVATLNGTALAIDRIFAAILEHYQTKAGEVMIPQALLKYLDFDKI 416 RYKD+ GKN+YVATLNGTAL+IDRIFAAILE++QTK G+++IPQAL KYLDFD I Sbjct: 361 RYKDINNGKNSYVATLNGTALSIDRIFAAILENFQTKDGKILIPQALKKYLDFDTI 416 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507745|ref|NP_109694.1| thymidylate kinase [Mycoplasma pneumoniae M129] (210 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072666.1| thymidylate kinase (tmk) [Mycoplasma genitalium... 280 1e-077 >ref|NP_072666.1| thymidylate kinase (tmk) [Mycoplasma genitalium G-37] Length = 210 Score = 280 bits (715), Expect = 1e-077, Method: Compositional matrix adjust. Identities = 129/208 (62%), Positives = 168/208 (80%) Query: 1 MKQGVFVAIEGVDGAGKTVLLEAFKQRFPQSFLGFKTLFSREPGGTPLAEKIRALLLHEA 60 M +GVFV IEGVDGAGKT L+E FK+ +P FL ++ ++REPGGT LAEKIR LLL+E Sbjct: 1 MNKGVFVVIEGVDGAGKTALIEGFKKLYPTKFLNYQLTYTREPGGTLLAEKIRQLLLNET 60 Query: 61 MEPLTEAYLFAASRTEHVRQLIQPALQQKQLVIVDRFVWSSYAYQGLIKKVGLDVVKKLN 120 MEPLTEAYLFAA+RTEH+ +LI+PA++++QLVI DRFV+SS+AYQGL KK+G+D VK++N Sbjct: 61 MEPLTEAYLFAAARTEHISKLIKPAIEKEQLVISDRFVFSSFAYQGLSKKIGIDTVKQIN 120 Query: 121 ADAVGDSMPDFTFIVDCDFETALNRMAKRGQDNLLDNTVKKQADFNTMRQYYHSLVDNKR 180 A+ + MP+FTFI+DC+F+ AL RM KRG DNLLD +K + DF+T+R YY SLVD K Sbjct: 121 HHALRNMMPNFTFILDCNFKEALQRMQKRGNDNLLDEFIKGKNDFDTVRSYYLSLVDKKN 180 Query: 181 VFLLDGQNQTGCLEQFIEQLSQCLTQPT 208 FL++G N+ LE+FIE L++CL QPT Sbjct: 181 CFLINGDNKQEHLEKFIELLTRCLQQPT 208 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507746|ref|NP_109695.1| similar to DNA-polymerase subunits [Mycoplasma pneumoniae M129] (253 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072667.1| hypothetical protein MG007 [Mycoplasma genitali... 281 4e-078 >ref|NP_072667.1| hypothetical protein MG007 [Mycoplasma genitalium G-37] Length = 254 Score = 281 bits (720), Expect = 4e-078, Method: Compositional matrix adjust. Identities = 127/254 (50%), Positives = 184/254 (72%), Gaps = 1/254 (0%) Query: 1 MFNPTHALLIIQRRGSYLQPVLTEYLTRVVCEQQTGCQTCPSCLEILHGTYNNFYSFDQA 60 M THALLIIQR+GS+L+P L YLT +VCE + GC+ C +CLEIL+ YN+ Y FDQ Sbjct: 1 MLTTTHALLIIQRKGSFLKPFLDNYLTSIVCENKNGCKKCINCLEILNNKYNSLYWFDQI 60 Query: 61 NPFKREHALHLSEVLNRQSES-NQKQLYLIKNLETLTATAMNSLLRLIEEHPVNTYGVFT 119 NPFKRE+AL L+ + NR+ S N K +YLI+ +E L++ ++NSLLRL+E+ P+N+YG+FT Sbjct: 61 NPFKRENALQLARIFNRERTSVNNKNIYLIEEIEKLSSNSINSLLRLVEDSPINSYGIFT 120 Query: 120 TKNENMILPTILSRVQKVVLKKATQLPFQVDSKDQAILKSFFSVDEQLQALDNGSFTRXX 179 TKNE++IL T LSRVQKVVLKKA+++PF+V DQ I+ SFF+VDEQ++A++NGSF R Sbjct: 121 TKNESLILSTFLSRVQKVVLKKASKVPFKVSKNDQEIITSFFTVDEQIEAIENGSFNRFK 180 Query: 180 XXXXXXXXXXXXASTVHEAWVLFKQLNQTETAQVLNFMVDYTKDLTKKDRLLNMVQNLVF 239 ++ AW +F+ + +E AQ++ +++ T+++ KK L N ++ L + Sbjct: 181 IILDACLNKKTGTEQIYHAWQIFRDFSNSEIAQLITLIINKTENIDKKSILFNCLKVLPY 240 Query: 240 NPPKAALFANLINW 253 NPPK+ LFANL++W Sbjct: 241 NPPKSTLFANLVSW 254 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507747|ref|NP_109696.1| thiophene and furan oxidation protein [Mycoplasma pneumoniae M129] (442 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072668.1| thiophene and furan oxidation protein (tdhF) [M... 573 e-166 ref|NP_072998.1| conserved hypothetical GTP-binding protein [Myc... 66 6e-013 >ref|NP_072668.1| thiophene and furan oxidation protein (tdhF) [Mycoplasma genitalium G-37] Length = 442 Score = 573 bits (1478), Expect = e-166, Method: Compositional matrix adjust. Identities = 282/442 (63%), Positives = 357/442 (80%) Query: 1 MDTKQTMFALATAPFNSAIHIIRLSGPDVYRIINQITNKEVKPLGMRIQRVWLIDHNQKK 60 M ++ +FALATAPFNSA+HIIR SGPDVY I+N+ITNK++ GM+IQR W++D N K+ Sbjct: 1 MKSEINIFALATAPFNSALHIIRFSGPDVYEILNKITNKKITRKGMQIQRTWIVDENNKR 60 Query: 61 VDDVLLFKFVAPNSYTGEDLIEISCHGSMVIVNEIIGLLLKHGAVQAQPGEFTQRGYLNG 120 +DDVLLFKFV+PNSYTGEDLIEISCHG+M+IVNEI LLLK G V A+PGEFTQR +LNG Sbjct: 61 IDDVLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGVYAKPGEFTQRSFLNG 120 Query: 121 KMSLNQAASVNNLVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQMEVNLDYPEY 180 KMSL QA++VN L+LSPN +KD+ LN LAG++D +LE + +++ QLVMQMEVN+DYPEY Sbjct: 121 KMSLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNIDYPEY 180 Query: 181 TDEQRELVTMNQAVVQITQILNQIVVGQDQLQRLKDPFKIAIIGNTNVGKSSLLNALLDQ 240 DEQ EL T+N V I + L +I+ QL++L DPFKIAIIG TNVGKSSLLNALL+Q Sbjct: 181 LDEQVELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNALLNQ 240 Query: 241 DKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQSALEKAGIQKTFGAIKTANLV 300 DKAIVS IKGSTRD+VEGDF LNG+ +KILDTAGIR+H+S LEKAGI+K+F +IK ANLV Sbjct: 241 DKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESIKQANLV 300 Query: 301 IYLLDARQPEPDPKIIARLKKLKKDFFLVHNKADLVQQSFQVSISAKQKQIQPLVDLLTQ 360 IYLLDA P+ D ++I+ KK KKDFF+ +NK DL+ F+ SISAKQK I+ LVDLLT+ Sbjct: 301 IYLLDATHPKKDLELISFFKKNKKDFFVFYNKKDLITNKFENSISAKQKDIKELVDLLTK 360 Query: 361 YLHQFYSVEQNQLYLISDWQTILLQKAIAELEHFLIKQQNCLFFDILVVHLRAAHEYILQ 420 Y+++FY ++YLI +WQ IL++K +LE FL +Q+ LFFD+LV HLR A + IL+ Sbjct: 361 YINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLVTHLREAQQDILK 420 Query: 421 VLGKNTNYDLINEIFKHFCLGK 442 +LGK+ +DL+NEIF +FCLGK Sbjct: 421 LLGKDVGFDLVNEIFNNFCLGK 442 >ref|NP_072998.1| conserved hypothetical GTP-binding protein [Mycoplasma genitalium G-37] Length = 448 Score = 66.2 bits (160), Expect = 6e-013, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 219 KIAIIGNTNVGKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQH 278 + +IG NVGKSSL+N L+ Q++ +VS G+TRD ++ +NG ++DTAGI++ Sbjct: 180 RFCVIGKPNVGKSSLINQLVKQNRVLVSNESGTTRDAIDVPLKVNGEKFLLIDTAGIKRK 239 Query: 279 ---QSALEKAGIQKTFGAIKTANLVIYLLDARQP 309 +E A KT AI +N+++ ++D +P Sbjct: 240 GKINMGIETASYIKTKLAIARSNVILLMVDGSKP 273 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507748|ref|NP_109697.1| hydrolase [Mycoplasma pneumoniae M129] (261 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072669.1| hypothetical protein MG009 [Mycoplasma genitali... 365 e-103 >ref|NP_072669.1| hypothetical protein MG009 [Mycoplasma genitalium G-37] Length = 262 Score = 365 bits (938), Expect = e-103, Method: Compositional matrix adjust. Identities = 168/261 (64%), Positives = 207/261 (79%) Query: 1 MEYFDAHCHLNCEPLLEQHEKSLANFRLIGLKANVVGTNLTNSQIAVNLAKQHPDLLKAG 60 MEYFDAHCHLNCEPLL + EKS+ANF+LI LKANVVGT+L NS+IAV LAK++PDLLKA Sbjct: 1 MEYFDAHCHLNCEPLLSEIEKSIANFKLINLKANVVGTDLDNSKIAVELAKKYPDLLKAT 60 Query: 61 VGIHPNDVQLFDLKAAQATLKKLVSTHRSFISCIGEYGFDYHYTKDYITXXXXXXXXXXX 120 +GIHPNDV L D K + L +L+ +R+FISCIGEYGFDYHYT ++I Sbjct: 61 IGIHPNDVHLVDFKKTKKQLNELLINNRNFISCIGEYGFDYHYTTEFIELQNKFFEMQFE 120 Query: 121 XXXXYQLVHMLHVRDVHERIYEVLKRLKPKQPVVFHCFSEDTNTALKLLTLREVGLKVYF 180 +LVHMLH+RD HE+IYE+L RLKP QPV+FHCFS+D N A KLL+L+++ + ++F Sbjct: 121 IAETNKLVHMLHIRDAHEKIYEILTRLKPTQPVIFHCFSQDINIAKKLLSLKDLNIDIFF 180 Query: 181 SIPGIVTFKNAKNLQAALSVIPTELLLSETDSPYLAPVPFRGKTNWPECVVHTVQTIADI 240 SIPGIVTFKNA+ L AL +IP+ELLLSETDSP+L P PFRGK NWPE VVHTV T+A+I Sbjct: 181 SIPGIVTFKNAQALHEALKIIPSELLLSETDSPWLTPSPFRGKVNWPEYVVHTVSTVAEI 240 Query: 241 KQVPLAEIKQAIVHNAKKLFW 261 K++ +AE+K+ IV NAKKLFW Sbjct: 241 KKIEIAEMKRIIVKNAKKLFW 261 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] (131 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507750|ref|NP_109699.1| hypothetical protein MPN011 [Mycoplasma pneumoniae M129] (231 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507751|ref|NP_109700.1| hypothetical protein MPN012 [Mycoplasma pneumoniae M129] (235 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] (257 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] (212 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072670.1| hypothetical protein MG010 [Mycoplasma genitali... 230 9e-063 >ref|NP_072670.1| hypothetical protein MG010 [Mycoplasma genitalium G-37] Length = 218 Score = 230 bits (586), Expect = 9e-063, Method: Compositional matrix adjust. Identities = 115/216 (53%), Positives = 152/216 (70%), Gaps = 6/216 (2%) Query: 1 MELRNTKLEQLFYIYHRNLK------YRCPMQYLTKRGFNLQDLLSVGGGLAYLGEKQWL 54 M++R +L +LF++YH+NLK Y + YL +RGFNLQD L VGGG+ YL K+WL Sbjct: 1 MDVRTERLNELFFVYHKNLKNQSKSKYSRAVNYLKRRGFNLQDFLKVGGGVGYLQNKEWL 60 Query: 55 NLSLYNFNNQLVGFLSRKVGFEKKFLYLPINKPPSKSESFLGLKHLPTETNTIYLVEGDF 114 NL LY+F+ L+GFL+RKV ++K+FLY P NKPPSKSE+F+GL+ L + N+IYLVEGDF Sbjct: 61 NLPLYSFDGNLIGFLNRKVSYKKEFLYTPFNKPPSKSEAFVGLRELVIKDNSIYLVEGDF 120 Query: 115 DWLAFRKGGILNCLPLCGLTLSDKQMKFFQQSKIEKVVLCLDNDFAGKVAAANLERILKN 174 DWLAFRK GILN LPLCGLT+S++Q+++ +Q KI+K+ +C DND AGK A NL+ L Sbjct: 121 DWLAFRKAGILNSLPLCGLTISNQQVQWLKQKKIKKIFICFDNDLAGKNGAKNLKEYLTK 180 Query: 175 AGFXXXXXXXXXXXXDWNELLLLYPKNWAKALRDHL 210 GF DWN+L LL NW+ L + L Sbjct: 181 QGFITKVIEIKAAAKDWNDLFLLNNSNWSAVLTNQL 216 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] (285 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072671.1| hypothetical protein MG011 [Mycoplasma genitali... 325 3e-091 >ref|NP_072671.1| hypothetical protein MG011 [Mycoplasma genitalium G-37] Length = 287 Score = 325 bits (833), Expect = 3e-091, Method: Compositional matrix adjust. Identities = 164/264 (62%), Positives = 219/264 (82%), Gaps = 2/264 (0%) Query: 1 MAKIKLKNRKALVVY-NKTDFDKNKHFAQALVDELNKKKLVGHILLLDDETADHK-HIKN 58 M KIKLKNRKALVVY NK DF+KN+ FA +L+ EL KKKL +LLL+++ + + I Sbjct: 1 MGKIKLKNRKALVVYDNKDDFEKNQTFALSLIKELQKKKLNAEVLLLENKDINFEAKINE 60 Query: 59 VELIINRSRRIDFLTKHNFLNSFLINPQNIVLVANDKYETYRWLKQHKFLTVDTTIFDPK 118 ELI+NRSR++DFL +N +N+FL+NP N+V +ANDKYETY+WLKQ++FLTV++++ + Sbjct: 61 AELILNRSRKVDFLKTNNQINTFLVNPFNVVFIANDKYETYKWLKQNRFLTVNSSLLSKE 120 Query: 119 KIKTFPIVIKKRDSYGGEDVHLIQNAEEIKQLPIQNPNEWIVQPFLSIGKVEYRAYILFG 178 IK+FP+++KKR+S+GG+DVHL+ +A+EIK L I+N EWIVQPFLSIG VEYRAYILFG Sbjct: 121 TIKSFPVIVKKRNSHGGKDVHLVNSADEIKHLNIENATEWIVQPFLSIGTVEYRAYILFG 180 Query: 179 KVLKTIRRTASGDDFRANYSQNAAVDLFKLKWYIKHKIKRIAKKLGHGYYAIDFFLNKYN 238 K++K I++ ++ + F+AN+SQ A V LFKLKW+ K KIK+IAK+L GYYAIDFFLN+YN Sbjct: 181 KIIKVIKKISNANQFKANFSQGAEVSLFKLKWFTKRKIKKIAKRLREGYYAIDFFLNRYN 240 Query: 239 RIVVNEIEDAAGARALTKMCPDLN 262 R++VNEIEDAAGARAL ++CPDLN Sbjct: 241 RVIVNEIEDAAGARALVQLCPDLN 264 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507755|ref|NP_109704.1| similar to ribosomal S6 modification protein [Mycoplasma pneumoniae M129] (288 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072672.1| hypothetical protein MG012 [Mycoplasma genitali... 368 e-104 >ref|NP_072672.1| hypothetical protein MG012 [Mycoplasma genitalium G-37] Length = 287 Score = 368 bits (944), Expect = e-104, Method: Compositional matrix adjust. Identities = 180/287 (62%), Positives = 213/287 (74%) Query: 1 MKHISAVYNPAFTNIASKLNQTELLKDAAQSLNIQLDFFTCFDINTNQDKTKLPFKSNTI 60 MK I+ VYNPAF I+SKLNQT+LLK+A++ L+I+L FFT FDINT + K LPF SN I Sbjct: 1 MKKINVVYNPAFNPISSKLNQTQLLKNASEELDIELKFFTSFDINTTKAKANLPFISNKI 60 Query: 61 LFLDKNIALAQWLESVGLRVXXXXXXXXXXDNKALSHAVLAQHPTIKQIPTLIGPQNFRL 120 LF+DKNIALA+WLES G V DNK LSHA++AQ+P IKQI TL+GPQNF Sbjct: 61 LFMDKNIALARWLESNGFEVINSSIGINNADNKGLSHAIIAQYPFIKQIKTLLGPQNFDR 120 Query: 121 AWYPEKLEQFIEQIKRCFQFPVIVKSIYGSFGDYVFLCKDEQKLRQTLSGLTEQIIVQQY 180 W P L+ FI QIK+ +FPVIVKS++GSFGDYVFLC DEQKLR+TL +Q IVQ+Y Sbjct: 121 EWNPVMLDVFINQIKQSMEFPVIVKSVFGSFGDYVFLCLDEQKLRKTLMSFNQQAIVQKY 180 Query: 181 IATSNSEAXXXXXXXXXXXGALHTQNEGDFRSNLNKGAVGEPYQLSQEETKLAITISQAM 240 I S E+ GALHT N DFRSNLNKGA E + L++E+ LA+ IS+ M Sbjct: 181 ITCSKGESVRVIVVNNKVIGALHTTNNSDFRSNLNKGAKAERFFLNKEQENLAVKISKVM 240 Query: 241 QLFYCGIDFLFDQDRSLIFCEVNSNVQLTKSSMYLKTNLAIQLLASI 287 QLFYCGIDFLFDQDRSLIFCEVN NVQLT+SSMYL TNLAI+LL +I Sbjct: 241 QLFYCGIDFLFDQDRSLIFCEVNPNVQLTRSSMYLNTNLAIELLKAI 287 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase [Mycoplasma pneumoniae M129] (269 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072673.1| methylenetetrahydrofolate dehydrogenase/methyle... 343 8e-097 >ref|NP_072673.1| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (folD) [Mycoplasma genitalium G-37] Length = 306 Score = 343 bits (881), Expect = 8e-097, Method: Compositional matrix adjust. Identities = 165/267 (61%), Positives = 205/267 (76%) Query: 1 MSFDGKQLAHEILLTYKNRDWSQVKLVILQTNNDVSSDAFIRQKMNACNTLGAQSELIKY 60 MSFDGK A IL TYKN DWS+ KLVI+Q N+D SSD+FI+QK+ ACNT+GA+SELIK Sbjct: 34 MSFDGKLKAQSILETYKNFDWSKCKLVIIQANDDDSSDSFIKQKLIACNTVGAKSELIKL 93 Query: 61 HESVTEKELLEKIQQLNTDPEVTGIILQLPVYPHLKQNKLLKAIDPYKDVDYLTGNCPLP 120 +T+ EL+EKI LN D VTGIILQLPVYPHL +N LL+AI+P KDVD LT N Sbjct: 94 SNQITQAELIEKIISLNHDVNVTGIILQLPVYPHLDKNSLLEAINPLKDVDGLTTNHLAE 153 Query: 121 IRSCVVEAVLILKEHFHHDFTNKQIXXXXXXXXXXXPIFHYLKETGHQVVGCDKHTPNTM 180 I+ C+VEA++ LKE F+ +F N++I PI+ +LK +G++V CDK TPNT Sbjct: 154 IKPCIVEAIITLKELFNLEFNNQKIVVVGLGITGGKPIYEFLKTSGYKVQACDKDTPNTF 213 Query: 181 ELIKTADVVITAIGKPHFFKTTNFKPGVILYDVGVSRNVLNKLCGDIDPNGIEKVAKWWS 240 ELIK+AD+V TAIGK HFF+ NFK GVIL+D+GVSRN NKLCGDI+P GIEK A+WW+ Sbjct: 214 ELIKSADIVFTAIGKSHFFQAKNFKKGVILFDIGVSRNKQNKLCGDINPEGIEKKARWWT 273 Query: 241 PTPGGVGPFTVLAIMKNLWVLYEAHQR 267 TPGGVGPFTVLAI+KNLW+L+E ++R Sbjct: 274 KTPGGVGPFTVLAIIKNLWILHEKNKR 300 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507757|ref|NP_109706.1| transport ATP-binding protein [Mycoplasma pneumoniae M129] (623 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasm... 877 0.0 ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasm... 126 6e-031 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 78 2e-016 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 62 2e-011 ref|NP_072781.1| galactoside ABC transporter, ATP-binding protei... 60 8e-011 >ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 623 Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/622 (70%), Positives = 505/622 (81%) Query: 1 MGLVLKQFNRKIRTALILAPLFTFAQIIIDLIIPSFLASAIAVVFSIVTLKQKEASGEGV 60 MGLVLK+FN KIRTALILAP FTFAQI+IDLIIPSFLASAI+VVFSI LKQ E+ G+ + Sbjct: 1 MGLVLKEFNNKIRTALILAPFFTFAQIVIDLIIPSFLASAISVVFSIDKLKQDESGGKTI 60 Query: 61 AVDFIAESKLSFQSVQEAQIVLATSVILLALFGLVFGLISIFCASIVAGNTSYFLRRKIF 120 +VDFI + ++F +V+EAQIVLAT+VILLAL GL FGLISI+CAS V+ NTS+ LR+KIF Sbjct: 61 SVDFIGGANINFANVREAQIVLATTVILLALCGLFFGLISIYCASYVSANTSFLLRKKIF 120 Query: 121 RKIMHITAPSHDQYGSSTLLVRLTNDVYLMEIMTFDFLRLIVRAPFLFIGGLAFAIATNS 180 K+M IT PSHD YGSSTLLVRLTNDVYLME++ FDFLRLI+RAP LFIGGL FA+ TN Sbjct: 121 AKLMRITTPSHDHYGSSTLLVRLTNDVYLMEVIAFDFLRLIIRAPLLFIGGLVFAVTTNQ 180 Query: 181 DMSISLAITFPLTFLVIGILNKKSTPLFKNNQKSVDQINERVEEDVSGYKVVQSFNLKDT 240 DMSISL ITFPL LVIGILN+KS PLFK NQKSVD+INERVEEDVSGYKV+QSFNL Sbjct: 181 DMSISLLITFPLILLVIGILNRKSIPLFKENQKSVDKINERVEEDVSGYKVIQSFNLHSF 240 Query: 241 ECLKFKAANARWTKSSTNSLFVNTLNXXXXXXXXXXXXXXALLLVFQLDNSVRVDPLPDN 300 KFK AN W K+ST+SLF+N+LN ALLLVFQLD+SV VDPLP + Sbjct: 241 TNNKFKIANEGWKKNSTSSLFINSLNIPFTFFLSSLTIIIALLLVFQLDSSVSVDPLPQD 300 Query: 301 AAIRPSIFAFFQYNFYIVLGLILTSLTMVNFTRSRVALGRIKDVLNKPEIQQHVVPDQTV 360 AAIRP+IFAFFQYNFYIVLG ILTSLTMVNF RSRVALGRIKD+L++PEI+ DQ Sbjct: 301 AAIRPNIFAFFQYNFYIVLGFILTSLTMVNFNRSRVALGRIKDILSQPEIKTITNKDQKE 360 Query: 361 LAPSLEFKNVAFGLGNKENRDFLQDLNFKFEAGKTYGIVGPTGSGKSLIANIIGGLYEPN 420 L P+LEF+N++FGLGNK N +FLQ+L+FKFEA KTYGIVGPTGSGKSLIANIIGGLYEPN Sbjct: 361 LLPTLEFRNISFGLGNKNNNNFLQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPN 420 Query: 421 QGEIFVGGQSIKTIDSDYLAKMIGIVFQQNILFKGTIASNIKIGLETREDWKHEPXXXXX 480 +GEI +GG+ I++IDS YL++MIGIVFQQNILFKGTI+SNIKIG+ETR DWK++ Sbjct: 421 EGEILIGGEKIQSIDSLYLSEMIGIVFQQNILFKGTISSNIKIGIETRSDWKNQSDLQKN 480 Query: 481 XXXXXXXXXXXXXTFIEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKPQILVLDDS 540 TFIEKFSD+YDH VEQLGKNLSGGQKQRVAIART+ITKP+ILV DDS Sbjct: 481 EAMKNAAKIACADTFIEKFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDS 540 Query: 541 MSALDALTEKKVRENIANELPGXXXXXXXXXXXXXXYAHKIMVIDNGRIAGFDSDAKLMQ 600 MSALDALTEKKVRENI N+L +A KI+VIDNGRI GFDSD KLM+ Sbjct: 541 MSALDALTEKKVRENIENDLKLTTKIIISQNINSIKHADKILVIDNGRIVGFDSDQKLMK 600 Query: 601 SCDIYVKMKQAQKDQGGDFDAV 622 +C +Y KMK++QKD GGDFDAV Sbjct: 601 NCSLYQKMKESQKDLGGDFDAV 622 >ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 589 Score = 126 bits (316), Expect = 6e-031, Method: Compositional matrix adjust. Identities = 150/619 (24%), Positives = 261/619 (42%), Gaps = 70/619 (11%) Query: 21 LFTFAQIIIDLII----PSFLASAIAVVFSIVTLKQKEASGEGVAVDFIAE--SKLSFQS 74 L+ F I++ ++ P LA + +F I S G AVD I + Sbjct: 10 LYVFLCIVLGILYGIANPILLAQGLGFIFPI-------TSSNGRAVDSIYSLIYPTNLNV 62 Query: 75 VQEAQIVLATSVILLALFGLVFGLISIFCASIVAGNTSYFLRRKIFRKIMHITAPSHDQY 134 IV T + AL VF + + + T LR K + K+ ++ D Sbjct: 63 FIRLTIVSVTVFVAYALI-FVFNVAQNYVGIKLYQQTCATLRWKAYLKMQSMSTSFFDTQ 121 Query: 135 GSSTLLVRLTNDVYLMEIM--------TFDFLRLIVRAPFLFIGGLAFAIATNSDMSISL 186 + L+ RLTND+Y ++ + ++ + +F+ L+ IA S ++ Sbjct: 122 NNGDLMSRLTNDMYNIDNLFTQAGGQAIQSLFNILTTSVLIFL--LSPVIALISLSILAT 179 Query: 187 AITFPLTFLVIGILNKKSTPLFKNNQKSVDQINERVEEDVSGYKVVQSFNLKDTECLKFK 246 ITF FL KKS + Q ++ ++ +EE ++ +KVV L++ F Sbjct: 180 LITFSFAFL------KKSKTSYSQVQNNLGDMSGYIEEVLTNHKVVHVLKLQEIMIKDFD 233 Query: 247 AANARWTKSS----TNSLFVNTLNXXXXXXXXXXXXXXALLLVFQLDNSVRVDPLPDNAA 302 N K + T S+F+ + L+ + + V+ +P + Sbjct: 234 QYNKSMIKPTVRGNTYSIFLFSW--------FGFISNITYLVSISIATAFSVNSIP---S 282 Query: 303 IRPSIFAF-FQYNFYIVLGLILTSLTMVNFTRSRVALG-----RIKDVLN----KPEIQQ 352 S+ + F ++ L I +L + + V LG R+ VL+ K Sbjct: 283 FGISVINYSFMLSYIASLRQITLALDQIFTLWNLVQLGVVSAERVFKVLDLNVEKDTATI 342 Query: 353 HVVPDQTVLAPSLEFKNVAFGLGNKENRDFLQDLNFKFEAGKTYGIVGPTGSGKSLIANI 412 +PD + ++ F+NVAFG +++ L +NF + G IVGPTG+GKS I N+ Sbjct: 343 DKLPD---IKGNIRFENVAFGYN--KDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINL 397 Query: 413 IGGLYEPNQGEIFVGGQSIKTIDSDYLAKMIGIVFQQNILFKGTIASNIKIGLETREDWK 472 + Y+P +G+I++ I + + I IV Q + LF GTI NI++G R+D Sbjct: 398 LMKFYKPFEGKIYMDNFEISDVTKKAWREKISIVLQDSFLFSGTIKENIRLG---RQDAT 454 Query: 473 HEPXXXXXXXXXXXXXXXXXXTFIEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKP 532 + FI + YD + LS G++Q + IAR VI Sbjct: 455 DDE-------IIAACKTANAHDFIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNA 507 Query: 533 QILVLDDSMSALDALTEKKVRENIANELPGXXXXXXXXXXXXXXYAHKIMVIDNGRIAGF 592 +L+LD++ S++D +EK ++E+I + A IMVI++G++ Sbjct: 508 PVLLLDEATSSVDVHSEKLIQESIGRLMKNKTSFIISHRLSIIRDATLIMVINDGKVLEM 567 Query: 593 DSDAKLMQSCDIYVKMKQA 611 + +LM+ Y ++KQ+ Sbjct: 568 GNHDQLMKQNGFYARLKQS 586 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 78.2 bits (191), Expect = 2e-016, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 21/179 (11%) Query: 383 LQDLNFKFEAGKTYGIVGPTGSGKSLIANIIGGLYEPNQGEIFV-----GGQSIKTIDSD 437 + D ++ F+ + Y I+G +GSGKS + N GL +PNQG+I+V G + K + Sbjct: 37 IDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIYIGAKQRKIKNFK 96 Query: 438 YLAKMIGIVFQ--QNILFKGTIASNIKIGLETREDWKHEPXXXXXXXXXXXXXXXXXXTF 495 L K I IVFQ + LFK T+ +I G K++ + Sbjct: 97 KLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQSKYD-------------ARQKAAYY 143 Query: 496 IEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKPQILVLDDSMSALDALTEKKVRE 554 +E Y +E+ LSGGQK+RVAIA + +P+IL+ D+ + LD E+++ + Sbjct: 144 LEMMGLKYPF-LERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQ 201 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 61.6 bits (148), Expect = 2e-011, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 25/192 (13%) Query: 367 FKNVAFGLGNKENRDFL-QDLNFKFEAGKTYGIVGPTGSGKSLIANIIGGLYEPNQGEIF 425 FK V + N N + +N K G+ I+G +GSGK+ + ++I L P G+ F Sbjct: 55 FKEVCKAVTNGINNQLICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSF 114 Query: 426 VGG-QSIKTIDSDYLA---KMIGIVFQQNILFKG-TIASNIKIGLETREDWKHEPXXXXX 480 V G +I D+ A K +G +FQQ L + + NIK+ L ++ + Sbjct: 115 VCGTNTICCSDAKLTALRNKNVGYIFQQYGLLRDLDVDDNIKLALPLKKRF--------- 165 Query: 481 XXXXXXXXXXXXXTFIEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKPQILVLDDS 540 + + + +H +++ K LSGGQ+QRVAIAR +I +P+IL D+ Sbjct: 166 ---------NNNLEELLERLELKEHRHKKVHK-LSGGQQQRVAIARALIKEPKILFGDEP 215 Query: 541 MSALDALTEKKV 552 A++ KK+ Sbjct: 216 TGAVNIDISKKI 227 >ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length = 564 Score = 59.7 bits (143), Expect = 8e-011, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 12/165 (7%) Query: 396 YGIVGPTGSGKSLIANIIGGLYEPNQGEIFVGGQSIKTIDS-DYLAKMIGIVFQQNILFK 454 + I+G G+GKS + +I+ GLY+P+ G+IF+G + + S D + IG+V Q L + Sbjct: 36 HTILGENGAGKSTLTSILFGLYKPDSGKIFIGEKQVNFKSSKDAVKHKIGMVHQHFKLIE 95 Query: 455 G-TIASNIKIGLETREDWKHEPXXXXXXXXXXXXXXXXXXTFIEKFSDTYDHTVEQLGKN 513 T+ NI +G E+R + T +EK+ D ++Q N Sbjct: 96 NYTVLDNIILGNESRFGF--------LPLINRKVSEAKIKTIMEKYGIFVD--LKQKVSN 145 Query: 514 LSGGQKQRVAIARTVITKPQILVLDDSMSALDALTEKKVRENIAN 558 L+ GQ+QRV I + + IL+ D+ + L L + + IAN Sbjct: 146 LTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIAN 190 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507758|ref|NP_109707.1| transport ATP-binding protein [Mycoplasma pneumoniae M129] (634 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasm... 938 0.0 ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasm... 125 2e-030 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 90 5e-020 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 78 3e-016 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 76 8e-016 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 65 2e-012 ref|NP_072781.1| galactoside ABC transporter, ATP-binding protei... 64 5e-012 >ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 589 Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/589 (74%), Positives = 516/589 (87%) Query: 46 VQGRTSSKVLYVMVCAIFGILTGVTNSILLAQGLGFIFPTTNTETDGIQSVYLLVFAHNL 105 ++G S K+LYV +C + GIL G+ N ILLAQGLGFIFP T++ + S+Y L++ NL Sbjct: 1 MEGSWSYKLLYVFLCIVLGILYGIANPILLAQGLGFIFPITSSNGRAVDSIYSLIYPTNL 60 Query: 106 PVMERLTIVCVTVVVAYILIFSFNVAQNYLGLKLYQEICALLRWKAYLKIQSMSTSFFDT 165 V RLTIV VTV VAY LIF FNVAQNY+G+KLYQ+ CA LRWKAYLK+QSMSTSFFDT Sbjct: 61 NVFIRLTIVSVTVFVAYALIFVFNVAQNYVGIKLYQQTCATLRWKAYLKMQSMSTSFFDT 120 Query: 166 QNNGDLMSRLTNDVYNINNLYAQVGGQTIQSLFILMTTATILFVLSPVIALISLTVXXXX 225 QNNGDLMSRLTND+YNI+NL+ Q GGQ IQSLF ++TT+ ++F+LSPVIALISL++ Sbjct: 121 QNNGDLMSRLTNDMYNIDNLFTQAGGQAIQSLFNILTTSVLIFLLSPVIALISLSILATL 180 Query: 226 XXXXXXXXXXARAAYAKVQNNLGDMSGYIEEVLSNHKVVHVLKLQEVMIDNFDKYNRPMV 285 ++ +Y++VQNNLGDMSGYIEEVL+NHKVVHVLKLQE+MI +FD+YN+ M+ Sbjct: 181 ITFSFAFLKKSKTSYSQVQNNLGDMSGYIEEVLTNHKVVHVLKLQEIMIKDFDQYNKSMI 240 Query: 286 NPTIKANTYAVFIYSWFGFISNITYLASISIATAFSVNNIPSFGVSAINYSFMLSYIAAL 345 PT++ NTY++F++SWFGFISNITYL SISIATAFSVN+IPSFG+S INYSFMLSYIA+L Sbjct: 241 KPTVRGNTYSIFLFSWFGFISNITYLVSISIATAFSVNSIPSFGISVINYSFMLSYIASL 300 Query: 346 RQTALPLNQIFSLWNLIQLGIVSGERVFKILDLESPQKQATITKLPNIKGNIRFEKVVFG 405 RQ L L+QIF+LWNL+QLG+VS ERVFK+LDL + ATI KLP+IKGNIRFE V FG Sbjct: 301 RQITLALDQIFTLWNLVQLGVVSAERVFKVLDLNVEKDTATIDKLPDIKGNIRFENVAFG 360 Query: 406 YSADKPILTGIDFSVKHGDIVAIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFEISEVS 465 Y+ DKP LTGI+FSVKHGD+VAIVGPTGAGKSTIINLLMKFYKPF GKIYMDNFEIS+V+ Sbjct: 361 YNKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDNFEISDVT 420 Query: 466 ETAWREKISIVLQDPFLFSGTIKENIRMGRQDATDEEIIEACKVANAHDFIMRLPQGYNT 525 + AWREKISIVLQD FLFSGTIKENIR+GRQDATD+EII ACK ANAHDFIMRLP+GY+T Sbjct: 421 KKAWREKISIVLQDSFLFSGTIKENIRLGRQDATDDEIIAACKTANAHDFIMRLPKGYDT 480 Query: 526 FISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMKDKTS 585 +ISNK DYLSVGERQLLTIARAVIRNAPVLLLDEATSS+DVHSEKLIQ+SIGRLMK+KTS Sbjct: 481 YISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDVHSEKLIQESIGRLMKNKTS 540 Query: 586 FIISHRLSIIRNATLIIVINDGKVLEMGNHEQLMRQNGFYARLKRSAVK 634 FIISHRLSIIR+ATLI+VINDGKVLEMGNH+QLM+QNGFYARLK+S+V+ Sbjct: 541 FIISHRLSIIRDATLIMVINDGKVLEMGNHDQLMKQNGFYARLKQSSVR 589 >ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 623 Score = 125 bits (313), Expect = 2e-030, Method: Compositional matrix adjust. Identities = 141/568 (24%), Positives = 256/568 (45%), Gaps = 74/568 (13%) Query: 107 VMERLTIVCVTVVVAYILIFSFNVAQNYLGLKLYQEICALLRWKAYLKIQSMSTSFFDTQ 166 V E ++ TV++ + F + Y + LLR K + K+ ++T D Sbjct: 75 VREAQIVLATTVILLALCGLFFGLISIYCASYVSANTSFLLRKKIFAKLMRITTPSHDHY 134 Query: 167 NNGDLMSRLTNDVYNINNLYAQVGGQTIQSLFI-LMTTATILFVLSPVIAL-----ISLT 220 + L+ RLTNDVY + + I F+ L+ A +LF+ V A+ +S++ Sbjct: 135 GSSTLLVRLTNDVYLM---------EVIAFDFLRLIIRAPLLFIGGLVFAVTTNQDMSIS 185 Query: 221 VXXXXXXXXXXXXXXARAA---YAKVQNNLGDMSGYIEEVLSNHKVVHVLKLQEVMIDNF 277 + R + + + Q ++ ++ +EE +S +KV+ L + F Sbjct: 186 LLITFPLILLVIGILNRKSIPLFKENQKSVDKINERVEEDVSGYKVIQSFNLHSFTNNKF 245 Query: 278 DKYNRPMVNPTIKANTYAVFIYS----WFGFISNITYLASI----SIATAFSVNNIPS-- 327 N K +T ++FI S + F+S++T + ++ + ++ SV+ +P Sbjct: 246 KIANEGWK----KNSTSSLFINSLNIPFTFFLSSLTIIIALLLVFQLDSSVSVDPLPQDA 301 Query: 328 ------FGVSAINYSFMLSYIAALRQTALPLNQIFSLWNLIQLGIVSGERVFKILDLESP 381 F N+ +L +I T + N+ + + LG +I D+ S Sbjct: 302 AIRPNIFAFFQYNFYIVLGFILT-SLTMVNFNR-----SRVALG--------RIKDILSQ 347 Query: 382 QKQATITK------LPNIKGNIRFEKVVFGYSADKP--ILTGIDFSVKHGDIVAIVGPTG 433 + TIT LP ++ F + FG L + F + IVGPTG Sbjct: 348 PEIKTITNKDQKELLPTLE----FRNISFGLGNKNNNNFLQNLSFKFEAYKTYGIVGPTG 403 Query: 434 AGKSTIINLLMKFYKPFAGKIYMDNFEISEVSETAWREKISIVLQDPFLFSGTIKENIRM 493 +GKS I N++ Y+P G+I + +I + E I IV Q LF GTI NI++ Sbjct: 404 SGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSEMIGIVFQQNILFKGTISSNIKI 463 Query: 494 GRQDATD----------EEIIEACKVANAHDFIMRLPQGYNTFISNKTDYLSVGERQLLT 543 G + +D E + A K+A A FI + Y+ + LS G++Q + Sbjct: 464 GIETRSDWKNQSDLQKNEAMKNAAKIACADTFIEKFSDSYDHNVEQLGKNLSGGQKQRVA 523 Query: 544 IARAVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMKDKTSFIISHRLSIIRNATLIIV 603 IAR +I +L+ D++ S++D +EK ++++I +K T IIS ++ I++A I+V Sbjct: 524 IARTLITKPRILVFDDSMSALDALTEKKVRENIENDLKLTTKIIISQNINSIKHADKILV 583 Query: 604 INDGKVLEMGNHEQLMRQNGFYARLKRS 631 I++G+++ + ++LM+ Y ++K S Sbjct: 584 IDNGRIVGFDSDQKLMKNCSLYQKMKES 611 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 90.1 bits (222), Expect = 5e-020, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 13/229 (5%) Query: 390 LPNIKGNIRFEKVVFGYSADKPILTGIDFSVKHGDIVAIVGPTGAGKSTIINLLMKFYKP 449 LP + F V F Y+ + P++ + FSV G+ V IVG G+GKSTI LL KP Sbjct: 2 LPTKQAACSFINVAFSYN-ELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKP 60 Query: 450 FAG--KIYMDNFEISEVSETAWREKISIVLQDPF-LFSG-TIKENIRMGRQDATDEEIIE 505 AG KI+ + VS R I I+ Q+P F G T++++I G ++ + Sbjct: 61 QAGEIKIFGKTVDFDNVS--YLRNNIGIIFQNPDNQFIGITVEDDIAFGLEN----KCFS 114 Query: 506 ACKVANAHDFIMRLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSID 565 K+ D + L + FI + LS G++Q + IA + N +++ DE+T+ +D Sbjct: 115 RQKIKAIIDEVT-LQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLD 173 Query: 566 VHSEKLIQQSIGRLMKDKTSFI-ISHRLSIIRNATLIIVINDGKVLEMG 613 ++K I+Q + +L K I I+H + + A ++V+N+GK+++ G Sbjct: 174 PKAKKTIKQFMVKLAKQGKCVISITHDMEEVTKADKVLVMNEGKLIKQG 222 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 77.8 bits (190), Expect = 3e-016, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 28/233 (12%) Query: 404 FGYSADKPILTGIDFSVKHGDIVAIVGPTGAGKSTIINLLMKFYK-----PFAGKIYM-- 456 F Y+ +K +L I+ +K I A++G +G GKST I L K + G IY Sbjct: 90 FWYNKNKQVLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLG 149 Query: 457 DNFEISEVSETAWREKISIVLQD--PFLFSGTIKENIRMG-------RQDATDEEIIEAC 507 N +++ R + +V Q PF FS I ENI G ++A +E + +A Sbjct: 150 KNINSGIINDLTLRTSVGMVFQKLTPFNFS--IFENIAYGIRAHGIHNKNAINEIVRQAL 207 Query: 508 KVANAHDFIM-RLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDV 566 A D + L + NT LS G++Q L IARA+ VLL+DE TS++D Sbjct: 208 ISAALWDEVKDNLHRNANT--------LSGGQQQRLCIARAIALQPDVLLMDEPTSALDS 259 Query: 567 HSEKLIQQSIGRLMKDKTSFIISHRLS-IIRNATLIIVINDGKVLEMGNHEQL 618 + I+ I +L + T I++H ++ IR I DG+V+E G +Q+ Sbjct: 260 IATNSIELLIQQLKEKFTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQI 312 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 76.3 bits (186), Expect = 8e-016, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 133/263 (50%), Gaps = 34/263 (12%) Query: 368 SGERVF------KILDLESPQKQATITKLPNIKGNIRFEKVVFGYSAD----KPILTGID 417 S ER+F K+ L SP+++ ++ + NI K V+ Y + +L G+D Sbjct: 199 SNERLFLKNEVKKVNWLNSPRQKQQAAQIDD--QNIIELKNVYKYITNGITTNAVLKGVD 256 Query: 418 FSVKHGDIVAIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFE---ISEVSETAWREK-I 473 ++K D + I+GP+G+GK+T++N++ + +G + ++ + +++ T +R+K + Sbjct: 257 LAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTKFRQKYV 316 Query: 474 SIVLQDPFLFSG-TIKENIRMG---RQDATDEEIIEACKVANAHDFIM-RLPQGYNTFIS 528 + Q L T++ENI +G + D + I+A A D + +LP Sbjct: 317 GYIFQQYGLLPNLTVRENIEIGANLQPDPSKRISIDALLEAVGMDSLQKKLP-------- 368 Query: 529 NKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMK--DKTSF 586 + LS G++Q ++IARA +N ++ DE T ++D+ +++ + + K T Sbjct: 369 ---NELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMI 425 Query: 587 IISHRLSIIRNATLIIVINDGKV 609 I++H I A L+I + DGK+ Sbjct: 426 IVTHNNLIANLADLVIYVADGKI 448 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 65.5 bits (158), Expect = 2e-012, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 16/231 (6%) Query: 403 VFGYSADKPILTGIDFS--VKHGDIVAIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFE 460 VF + PI DFS + I I+G +G+GKST++N KP G I++ + Sbjct: 25 VFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIY 84 Query: 461 ISEVSE-----TAWREKISIVLQDPF--LFSGTIKENIRMGRQDATDEEIIEACKVANAH 513 I R+ ISIV Q P LF T++++I G A + +A + A + Sbjct: 85 IGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPV-ALGQSKYDARQKAAYY 143 Query: 514 DFIMRLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDVHSEKLIQ 573 +M L F+ LS G+++ + IA + +L+ DE T+ +D E+ + Sbjct: 144 LEMMGL---KYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMM 200 Query: 574 QSIGRL-MKDKTSFIISHRL-SIIRNATLIIVINDGKVLEMGN-HEQLMRQ 621 Q I + +T F+I+H++ +++ A +++V+ GK+++ + +E M Q Sbjct: 201 QLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMDQ 251 >ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length = 564 Score = 63.9 bits (154), Expect = 5e-012, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 103/191 (53%), Gaps = 12/191 (6%) Query: 428 IVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFEIS-EVSETAWREKISIVLQDPFLFSG- 485 I+G GAGKST+ ++L YKP +GKI++ +++ + S+ A + KI +V Q L Sbjct: 38 ILGENGAGKSTLTSILFGLYKPDSGKIFIGEKQVNFKSSKDAVKHKIGMVHQHFKLIENY 97 Query: 486 TIKENIRMGRQDATDEEIIEACKVANAHDFIMRLPQGYNTFIS--NKTDYLSVGERQLLT 543 T+ +NI +G + + KV+ A I + + Y F+ K L+VG++Q + Sbjct: 98 TVLDNIILGNESRFGFLPLINRKVSEAK--IKTIMEKYGIFVDLKQKVSNLTVGQQQRVE 155 Query: 544 IARAVIRNAPVLLLDEAT---SSIDVHSEKLIQQSIGRLMKDKTSFIISHRLSIIRN-AT 599 I + + R++ +L+ DE T S +++ + I + +L KT +ISH+L+ I+ A Sbjct: 156 ILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIANFKKL--GKTIVLISHKLNEIKQVAD 213 Query: 600 LIIVINDGKVL 610 V+ GKV+ Sbjct: 214 TATVLRLGKVV 224 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507759|ref|NP_109708.1| similar to helicases [Mycoplasma pneumoniae M129] (1030 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072678.1| ATP-dependent RNA helicase, putative [Mycoplasm... 820 0.0 ref|NP_072677.1| ATP-dependent RNA helicase, putative [Mycoplasm... 221 3e-059 ref|NP_072676.1| ATP-dependent RNA helicase, putative [Mycoplasm... 151 3e-038 >ref|NP_072678.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length = 600 Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/600 (66%), Positives = 490/600 (81%), Gaps = 2/600 (0%) Query: 433 VSLSDNLLHQKPLHFALSDLEAVAVDDKQIKLSFAPSAVELKLIKRILSAYHKGNVVCID 492 + L+ NLL+ K LHF++SD++A+ ++D+Q+K+ F ++LKLIK +LS Y+KGN +CI Sbjct: 1 MKLTSNLLNYKQLHFSISDIKALKIEDRQLKIEFKAGGIDLKLIKSVLSNYYKGNAICIG 60 Query: 493 QESWYDLKQPAAKELIQFWNQFDLRNATSDGNH-IYLPKYYLFEVAKIFSQYLDIKNLFD 551 ++ WYDL AK LI FW+Q DLRNAT D N+ + L KY+LFEV S+Y D+ NL D Sbjct: 61 EDGWYDLNDENAKALISFWSQIDLRNATCDANNNLLLAKYHLFEVVDTISKYTDVTNLLD 120 Query: 552 VPTIKKIEDQNNNVFDLSLEHKKITSLRNYQQEGVKWIRGLEENKFGGILADEMGLGKTV 611 T +++ + N F LSL++ +I +LR YQ+EGVKWIR LE+N+FGGILADEMGLGKT Sbjct: 121 EKTALQLKIASENQFHLSLDNNQINNLRKYQKEGVKWIRALEDNQFGGILADEMGLGKTA 180 Query: 612 QVIFALLDSYLKNHVNLPSLIIVPASLLLNWKSEFEKFAPQIKVKVANIPSKERGELYEK 671 QVIFA+LDSY LPSLIIVPASLLLNWKSEF+KFAP +K+ AN KER ++YE Sbjct: 181 QVIFAMLDSYQSTKSLLPSLIIVPASLLLNWKSEFQKFAPHVKIVTANGNFKERSQVYES 240 Query: 672 LTNEILIVSFNVLRSDVKLITKQRFHYVVIDEAQGIKNDSSSITKAAKKVKGNFCLALTG 731 L N+IL++SFNVLRSD+K I++++FHYVVIDEAQGIKN++S++TKAAKK+KGNFCLALTG Sbjct: 241 LKNQILLMSFNVLRSDIKWISQKKFHYVVIDEAQGIKNENSTVTKAAKKIKGNFCLALTG 300 Query: 732 TPIENRLLDLWSCFDFVLPSFLGNKKQFTDQFEKEKTDQSFHLLMQRTSPFILRRTKSKV 791 TPIENRLLDLWSCFDFVLP+FLGNKKQF+DQFEKEK D+SF LM++TSPFILRRTK+KV Sbjct: 301 TPIENRLLDLWSCFDFVLPNFLGNKKQFSDQFEKEKNDESFQKLMKKTSPFILRRTKNKV 360 Query: 792 LKELPNKITTDIYVELNPMHQKLYEEERDRGLEEIKQIQDKSSFNILTLILKLRHLCSLP 851 LKELP KI TDIYVEL+ HQKLY++++ GL+EIK+ K++ NIL+LILKLRH+CSL Sbjct: 361 LKELPKKIITDIYVELSEEHQKLYDKQKTDGLKEIKESDAKNALNILSLILKLRHICSLV 420 Query: 852 K-NSQGILENSXXXXXXXXXXXXXXXNQRKIILFTQFIDVIDHFKDTFKEQGIEYFIFDG 910 K N E++ N+RK+ILFTQF+DVID FK T K Q I++ +FDG Sbjct: 421 KDNDVNDFEDNSKANAALNIIYEALENKRKVILFTQFLDVIDCFKQTLKNQKIDHLVFDG 480 Query: 911 RKSPKSRHSIIEKFNNAKNPCVLLASLKAGGVGINLTAAEVVIHFDVWWNTAVENQATDR 970 RK+ K+R++II+KFN+AK PCV+LASLKAGGVGINLTAAEVVIHFDVWWN+AVENQATDR Sbjct: 481 RKTVKNRNTIIQKFNSAKEPCVMLASLKAGGVGINLTAAEVVIHFDVWWNSAVENQATDR 540 Query: 971 AHRIGQKKTVQVYRIIAKNTIEERVCQVQAEKQELVSKTLVEDVNFFESLTNEELLRLFE 1030 AHRIGQ KTVQVYRIIAKNTIEERVCQVQ +KQELV KTLVEDVNFF+SL++EELL+LFE Sbjct: 541 AHRIGQSKTVQVYRIIAKNTIEERVCQVQNQKQELVKKTLVEDVNFFKSLSHEELLKLFE 600 >ref|NP_072677.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length = 176 Score = 221 bits (563), Expect = 3e-059, Method: Compositional matrix adjust. Identities = 109/173 (63%), Positives = 134/173 (77%) Query: 195 YDRNSLLFPLAGFLKELQANTEPTIFVFNDDKIDNILFLRISKKHHGLNHVCGFSGKKVF 254 Y+ NSLLF L FL ++ +P++F+ N+DK DNILFLR K +GL+HVCGF KVF Sbjct: 3 YENNSLLFNLDQFLSLVKEVKKPSLFLLNEDKTDNILFLRSQHKINGLSHVCGFLNNKVF 62 Query: 255 DFVTYKQKEKQIVLRSAYLSKFTDFKFPYTINIYKLQFGEPLFFYFLIQLKRDGFKNFYF 314 DFV+Y +K KQIVLR AYL+KFTDFKFPY INIYKL FGE LFF+FLI LK +GFKN +F Sbjct: 63 DFVSYNEKTKQIVLRLAYLNKFTDFKFPYNINIYKLAFGETLFFHFLIHLKMNGFKNIFF 122 Query: 315 QSEDSIVKEKEYLPKLYFKVEYDPVKNKFVSDAFFKYKNHFNKGTTTVYPHRY 367 QS+ IVKE EYLPK++ +E++ KNKF++DAFFKYKN + TTVYPHRY Sbjct: 123 QSDVVIVKESEYLPKMFLTIEFNTQKNKFITDAFFKYKNKNSNTLTTVYPHRY 175 >ref|NP_072676.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length = 168 Score = 151 bits (381), Expect = 3e-038, Method: Compositional matrix adjust. Identities = 75/163 (46%), Positives = 103/163 (63%), Gaps = 1/163 (0%) Query: 1 MTIAEIRKFAQTTQKFVEAENLFEHGNVVLPKKYLNKARGMAEVLYNSQVIKVSFTAKDG 60 MT+AEI+K A Q F EA+ L E GNV+ PKK+L + + + EVL + +V KV K Sbjct: 1 MTVAEIKKLALNNQVFNEAKALLEKGNVIFPKKFLKRKKIIIEVL-DGKVFKVQINLKTA 59 Query: 61 ELTCKCSCLANVDNCVHIVAVLLKYHQMLVESKRSFNLAEAFHLDCDQAEMLIENLSLEI 120 CSC + NCVHI+A LLKY+ + + + F+L +A L+C + E+LIEN+SL I Sbjct: 60 AAHLDCSCSNDKQNCVHIIAALLKYNDLKNQDNKEFDLNKADKLECKEVEILIENVSLAI 119 Query: 121 IAGGWNFKLGFTINLDKHNPQPSVLRFYCCDATFVYFLHLEND 163 + G W K+GF IN+DK + LRFYCCD VYFLH E++ Sbjct: 120 VNGSWKLKIGFVINIDKVQTNTTALRFYCCDNKDVYFLHTEDE 162 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507760|ref|NP_109709.1| heat shock protein DnaJ [Mycoplasma pneumoniae M129] (390 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072679.1| heat shock protein (dnaJ) [Mycoplasma genitaliu... 581 e-168 ref|NP_072862.1| dnaJ-like protein [Mycoplasma genitalium G-37] 87 3e-019 >ref|NP_072679.1| heat shock protein (dnaJ) [Mycoplasma genitalium G-37] Length = 389 Score = 581 bits (1498), Expect = e-168, Method: Compositional matrix adjust. Identities = 276/390 (70%), Positives = 322/390 (82%), Gaps = 1/390 (0%) Query: 1 MAAGKRDYYEVLGVSRSATAQDIKRAFRKLAMQYHPDRHKGEGETVQKQNEEKFKEVNEA 60 MAAGKRDYYEVLG+S++A++QDIKRAFRKLAMQYHPDRHK E ET QKQNEEKFKEVNEA Sbjct: 1 MAAGKRDYYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEA 60 Query: 61 YEVLSDTEKRGMYDRFGHEGLNASGFHETGFNPFDIFNSVFGEGFSFDMDGGSPFDFIFS 120 YEVLSD EKR +YD+FGHEGLNASGFHE GFNPFDIFNSVFGEGFSF MDG SPFDFIF+ Sbjct: 61 YEVLSDEEKRKLYDQFGHEGLNASGFHEAGFNPFDIFNSVFGEGFSFGMDGDSPFDFIFN 120 Query: 121 RGKKSRQNRVVLPYDLEIAVGVDISFFEMTNGCTRTIEYTKRVTCSACDGFGAEGGETGM 180 R KK RQ ++V+PY+L+IA+ ++I+FFEMTNGC +TI+Y ++V+C +C+GFGAEGGE+G+ Sbjct: 121 RSKK-RQQQIVVPYNLDIALVIEINFFEMTNGCNKTIKYERKVSCHSCNGFGAEGGESGL 179 Query: 181 VSCNSCEGNGFILKNQRSIFGTVQSQMLCQSCGGQGKQAXXXXXXXXXXXXXXVPTTKEI 240 C C GNGF++KNQRSIFGT+QSQ+LC +C GQGKQ KEI Sbjct: 180 DLCKDCNGNGFVIKNQRSIFGTIQSQVLCSTCNGQGKQIKVKCKTCRSNKYTVTNQIKEI 239 Query: 241 QIPAGIYHGDALVDDHGGNEFXXXXXXXXXXXXXXPSKIFKRVDHNVVANVLVDPMIAIT 300 IPAG+Y G+ALVD+ GGNEF SKIFKR D+NV+ANVLVDPM+AI Sbjct: 240 NIPAGMYSGEALVDESGGNEFKGHYGKLIIQVNVLASKIFKRSDNNVIANVLVDPMVAIV 299 Query: 301 GGKIELPTLEGIKEFNLRAGTKSGEQIVIPGGGIKFTKNFRKKAGDLIIIISYARPSEYS 360 GG IELPTLEGIKEFN+R GTKSGEQIVIP GGIKF+K+F++KAGDLIIIISYARP EY+ Sbjct: 300 GGVIELPTLEGIKEFNIRPGTKSGEQIVIPNGGIKFSKSFKRKAGDLIIIISYARPCEYT 359 Query: 361 APELRKLKEFIKPNQEVKQYLNALKNEYKS 390 EL+KL+EFIKPNQEVKQYLN LKNEYK+ Sbjct: 360 NLELKKLREFIKPNQEVKQYLNTLKNEYKT 389 >ref|NP_072862.1| dnaJ-like protein [Mycoplasma genitalium G-37] Length = 601 Score = 86.7 bits (213), Expect = 3e-019, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 11/104 (10%) Query: 1 MAAGKRDYYEVLGVSRSATAQDIKRAFRKLAMQYHPDRHKGEGETVQKQNEEKFKEVNEA 60 MA KRDYYEVLG++ A +IK+AFRKLA +YHPDR+ + F E+NEA Sbjct: 1 MAEQKRDYYEVLGITPDADQSEIKKAFRKLAKKYHPDRNNAPDAA------KIFAEINEA 54 Query: 61 YEVLSDTEKRGMYDRFGHEGLNASGFHETGFN-PFDIFNSVFGE 103 +VLS+ +KR YD++G +G++ E FN D+F S F E Sbjct: 55 NDVLSNPKKRANYDKYGFDGVDG----EPAFNFQADVFQSFFEE 94 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507761|ref|NP_109710.1| proline iminopeptidase [Mycoplasma pneumoniae M129] (309 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072680.1| proline iminopeptidase (pip) [Mycoplasma genita... 412 e-117 >ref|NP_072680.1| proline iminopeptidase (pip) [Mycoplasma genitalium G-37] Length = 308 Score = 412 bits (1060), Expect = e-117, Method: Compositional matrix adjust. Identities = 193/309 (62%), Positives = 233/309 (75%), Gaps = 1/309 (0%) Query: 1 MNTSPKQSGYLKVGNGHEVYFWTAGNPQGKSALYVHGGPGSGTDAGCLKYFDLDTTYVIL 60 MNT GYL VG+ H++Y+WT GNP GK LY+HGGPGSGTD GCLKYFDL+TT++IL Sbjct: 1 MNTKLNVKGYLNVGDNHQLYYWTQGNPNGKPVLYIHGGPGSGTDEGCLKYFDLETTWIIL 60 Query: 61 LDQRGCGQSKAVNPLLHNTTQDLVGDLEALRQHLKLERWTLFGGSWGSTLALVYAITHPQ 120 LDQRGCG+SK + N T LV D E LRQ L ++ WTLFGGSWGS LALVYAI HPQ Sbjct: 61 LDQRGCGKSKTNDIFYENNTDKLVSDFEILRQKLNIKNWTLFGGSWGSALALVYAIKHPQ 120 Query: 121 VVEQVFLRALFLGREQDWAEMLLGLGKLFYPYEHQTLLKAIPQACRTDFTKFTNYFYEVL 180 VV+++FLRALFL RE+DW+E L+GLGK+FYPYEHQ + +IP+A + + + NY Y+ Sbjct: 121 VVDKIFLRALFLAREKDWSEALMGLGKMFYPYEHQRFMDSIPKAYQNSYEQIVNYCYDQF 180 Query: 181 QGNDSALKTQLANAWVKWENTLLSPISYVKDEKAEDANFTFKLALLECHYAKHHSFLKPN 240 Q D + K +LA AWV WE+TLLSPI+ + A D KLALLECHYA + SFL N Sbjct: 181 QNGDESTKEKLAKAWVDWESTLLSPINKIH-STATDFKLVEKLALLECHYAVNKSFLDEN 239 Query: 241 FILENVAVLKDKPVHLIHGRFDLVCPLSQALELKRALPTLNLYVTNNAGHSGSDPNNLTT 300 FIL+N++VLK+K ++L HGRFDL+CPL Q L LK+A P L LYVTNNAGHSGSD NNL T Sbjct: 240 FILDNISVLKNKSIYLAHGRFDLICPLYQPLALKQAFPELQLYVTNNAGHSGSDANNLAT 299 Query: 301 IKHLLKTQL 309 IKHLLKT L Sbjct: 300 IKHLLKTYL 308 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507762|ref|NP_109711.1| methionyl-tRNA synthetase [Mycoplasma pneumoniae M129] (512 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072681.1| methionyl-tRNA synthetase (metS) [Mycoplasma ge... 773 0.0 >ref|NP_072681.1| methionyl-tRNA synthetase (metS) [Mycoplasma genitalium G-37] Length = 512 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/512 (70%), Positives = 428/512 (83%) Query: 1 MKRCYITTPIYYASGKPHIGHAFTTILADVIKRYKQQNGYEAYFLTGTDEHGNKIESKAK 60 MKRCYITTPIYYASGKPHIGHAFTTILADVIKR+K QNGYEA+ L G+DEHGNKIESKAK Sbjct: 1 MKRCYITTPIYYASGKPHIGHAFTTILADVIKRFKIQNGYEAFLLVGSDEHGNKIESKAK 60 Query: 61 SLGLDPQTFVDQNVAYFQQMWKQLDINFDHFIRTTDLSHKAQVQHAFQLLYDKGLIYQSN 120 SL LDP+TFVD N F+ MWK L+I+FDHFIRTTD HK QVQ FQ LYDK LIYQS Sbjct: 61 SLNLDPKTFVDINAQAFKLMWKTLNISFDHFIRTTDEIHKQQVQKTFQDLYDKKLIYQSE 120 Query: 121 WEGAYCVECEQNYFTYDKQTMLCEIGHQLTLVQEPSLFIAFKDSKDWIGEMIATNKLNIT 180 W+GAYCVECEQNYFT++KQTMLCEIGH L+LVQEP FI+F +K+WI I N+LNI Sbjct: 121 WKGAYCVECEQNYFTFNKQTMLCEIGHNLSLVQEPCWFISFSSTKNWIETTIGKNQLNII 180 Query: 181 PESRAAELKNNFLDGGLNDLALTRQNVTWGIPVPFDNKQTIYVWFDALFNYITNLGFAHN 240 P+SRA+ELKNNF++ GLNDLALTR+NVTWGI VPFD QTIYVWFDALF+YITNLGF + Sbjct: 181 PKSRASELKNNFINNGLNDLALTRKNVTWGIKVPFDPNQTIYVWFDALFSYITNLGFRNG 240 Query: 241 DPKFNKWWNNNDEEHEVIHLISREITRFHCIYWPIFLHQLGFKLPTQFLSHGWIVDGNGH 300 DP F KWWNN+++E EVIHLISREITRFHCIYWPIFLH L KLPTQFLSHGWIVDG G Sbjct: 241 DPNFIKWWNNDNKEREVIHLISREITRFHCIYWPIFLHLLDIKLPTQFLSHGWIVDGEGR 300 Query: 301 KMSKSLGNVISPEELLAQFGVDGTRYCLLKEMRLDKDNRCSMAIFKDIYNADLANSFGNH 360 KMSKSL NVISPE+L+ QFGVDGTRYCLLKEMRLDKDNRCS++I K+IYNADLANSFGNH Sbjct: 301 KMSKSLNNVISPEQLIDQFGVDGTRYCLLKEMRLDKDNRCSVSILKEIYNADLANSFGNH 360 Query: 361 ASRTFGMIKKYLGGQLDFIEVQDPQVKQLMDQANQAMVQFDTAWNNFQFYKGINGLLQLV 420 SRTFGMIKKYL G+L++ + D ++++M ++++VQFD +N+++FY+ IN LL++V Sbjct: 361 VSRTFGMIKKYLNGKLEYQIITDNALQKIMILIDESIVQFDHYFNSYEFYRAINLLLKIV 420 Query: 421 FQASKLIDQLKPWELVKQTDYTLLKQLLFACVRCTQVCFVLLAPILVHTSTQIFDLFNFS 480 F+ SKLID KPWEL K +++LLKQLLF CVRC QVC+VLL PILV+T++++F LFNF+ Sbjct: 421 FELSKLIDDFKPWELFKNQEFSLLKQLLFTCVRCVQVCYVLLTPILVNTASKVFHLFNFA 480 Query: 481 AQARSKTHLADPQQLQKISLAPVIQPLFKRLD 512 A K L D L+KI ++ ++ LFKR+D Sbjct: 481 DDACRKDQLRDATLLKKIIISNSMEVLFKRVD 512 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507763|ref|NP_109712.1| DNA-directed RNA polymerase delta subunit [Mycoplasma pneumoniae M129] (146 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072682.1| DNA-directed RNA polymerase, subunit delta (rpo... 231 2e-063 >ref|NP_072682.1| DNA-directed RNA polymerase, subunit delta (rpoE) [Mycoplasma genitalium G-37] Length = 145 Score = 231 bits (590), Expect = 2e-063, Method: Compositional matrix adjust. Identities = 116/145 (80%), Positives = 124/145 (85%), Gaps = 1/145 (0%) Query: 3 MQVEYLDLISQAKEIAETQFKAEPFSFDAIWKEVVKHFKISKQDEPNLISRFYQDFLEDP 62 MQ+EYL+LISQAK IAE QFKA PFSF+ IWKEVVKHFKISKQDEP+LI RFYQDFLEDP Sbjct: 1 MQLEYLNLISQAKVIAEKQFKANPFSFETIWKEVVKHFKISKQDEPSLIGRFYQDFLEDP 60 Query: 63 NFVYLGERNWKLRDFMKFDEWNKISQAMFVTKEIFEEGYEDLSXXXXXXXXXXXDFIMGN 122 NFVYLG+R WKLRDFMKFDEWNKISQ+MFVTKEIFEEGYEDLS DFIMGN Sbjct: 61 NFVYLGDRKWKLRDFMKFDEWNKISQSMFVTKEIFEEGYEDLSNKKVEPEEGVGDFIMGN 120 Query: 123 DGDDNSTGDEIVQGLIND-FRDDNQ 146 DGDDN TG EIVQGLIND F ++NQ Sbjct: 121 DGDDNETGSEIVQGLINDSFSEENQ 145 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507764|ref|NP_109713.1| fructose-bisphosphate aldolase [Mycoplasma pneumoniae M129] (288 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072683.1| fructose-bisphosphate aldolase (fba) [Mycoplasm... 441 e-126 >ref|NP_072683.1| fructose-bisphosphate aldolase (fba) [Mycoplasma genitalium G-37] Length = 288 Score = 441 bits (1135), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/288 (73%), Positives = 240/288 (83%) Query: 1 MLVNIKQMLQHAKQHHYAVPHININNYEWAKAVLTAAQQAKSPIIVSTSEGALKYISGHQ 60 MLVN K MLQ AK YA+PHININNYEWAKAVLTAA QA SPIIVS SEGALKY+SG+ Sbjct: 1 MLVNFKLMLQKAKLGKYAIPHININNYEWAKAVLTAANQANSPIIVSVSEGALKYMSGYS 60 Query: 61 VVVPMVKGLVDALKITVPVALHLDHGSYEGCKAALQAGFSSIMFDGSHLPFQENFTKSKE 120 VV+P+VKGL+++L + VPV LHLDHGSY+ C ALQAGFSS+MFDGSHLPF+ENF KSK+ Sbjct: 61 VVIPLVKGLIESLSVKVPVTLHLDHGSYDACIQALQAGFSSVMFDGSHLPFEENFNKSKK 120 Query: 121 LIELAKQTNASXXXXXXXXXXXXXXIVGQGELANIEECKQIATLKPDALAAGIGNIHGLY 180 LIE+A++TNAS ++GQGELAN++ECKQIA+LKPDALAAGIGNIHG+Y Sbjct: 121 LIEIAQKTNASVELEVGTIGGEEDGVIGQGELANVDECKQIASLKPDALAAGIGNIHGIY 180 Query: 181 PDNWKGLNYELIEAIAKATNLPLVLHGGSGIPEADVKKAIGLGISKLNINTECQLAFAKA 240 P NWKGLN+ LIE I+K TNLPLVLHGGSGI E DVKKAI LGI KLNINTECQLAFA Sbjct: 181 PKNWKGLNFPLIETISKITNLPLVLHGGSGILENDVKKAISLGICKLNINTECQLAFAHE 240 Query: 241 IREYVEAKKDLDTHNKGYDPRKLLKSPTQAIVDCCLEKMQLCGSTNKA 288 IR+Y+E+ KDLD + KGYDPRKLLK PTQAIVD CLEK+ LCGS NKA Sbjct: 241 IRKYIESNKDLDLNKKGYDPRKLLKEPTQAIVDTCLEKIDLCGSRNKA 288 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507765|ref|NP_109714.1| similar to GTPases [Mycoplasma pneumoniae M129] (362 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072684.1| GTP-binding protein, putative [Mycoplasma genit... 543 e-157 ref|NP_073056.1| GTP-binding protein (obg) [Mycoplasma genitaliu... 73 3e-015 >ref|NP_072684.1| GTP-binding protein, putative [Mycoplasma genitalium G-37] Length = 367 Score = 543 bits (1400), Expect = e-157, Method: Compositional matrix adjust. Identities = 262/350 (74%), Positives = 302/350 (86%) Query: 1 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNAGIVNVIDERLDKLASLIKPD 60 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPN GIVNV DERLDKLASLI P+ Sbjct: 1 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNTGIVNVSDERLDKLASLINPE 60 Query: 61 KVTHTTFRFVDIAGLVKGASKGEGLGNQFLANIREVDLICHVVRCYEDKKIVHVNNQVDP 120 K+ +TTFRFVDIAGLVKGAS+G+GLGNQFLANIREVDLICHVVRC++DKKIVHVNN +DP Sbjct: 61 KIVYTTFRFVDIAGLVKGASQGQGLGNQFLANIREVDLICHVVRCFQDKKIVHVNNTIDP 120 Query: 121 VFDFEIIVNELIQADIEVVNTRIGKIKRKAESGDKQSKEEYQLLAPVLQGLQQNQMVLHL 180 VFDFEIIVNELIQAD E++ RIGK+KRKAESGDK +KEE+ LL VL GL+Q QM + Sbjct: 121 VFDFEIIVNELIQADFELITNRIGKLKRKAESGDKIAKEEFVLLEIVLNGLKQGQMPIQT 180 Query: 181 VNEVDLKKLKSLNLLTAKPILVVANVSEADLSNLDHNPHLTQLNQFLKQHNLPHAIPVCA 240 ++E +LK +KSLNLLTAKPIL+VANVSE DL NLD+N L +LN FL Q +P AI VC+ Sbjct: 181 LSESELKTIKSLNLLTAKPILIVANVSENDLLNLDNNEALKKLNAFLDQKKIPKAITVCS 240 Query: 241 LLENELSSLDANGRQDWLKELGLSDYQGLNQLIKTAYDAIGLWSFFTFGKQEVRAWAFKK 300 L+E ELS L RQ +L ELGL +Y GLN++I+ AY + LWSFFTFGK+EVRAW FKK Sbjct: 241 LIEKELSGLKLEQRQYFLDELGLKNYSGLNRVIQAAYQTLNLWSFFTFGKKEVRAWTFKK 300 Query: 301 GWLAPQCAGEIHTDFERGFIKVEVISWNQLYELKSLQEAKKQGLVRLRGQ 350 GW APQCAG+IH+DFE+GFIKVEVISW+QL+ +KSLQEAKKQGL+RL G+ Sbjct: 301 GWNAPQCAGQIHSDFEKGFIKVEVISWDQLFAMKSLQEAKKQGLIRLEGK 350 >ref|NP_073056.1| GTP-binding protein (obg) [Mycoplasma genitalium G-37] Length = 433 Score = 73.2 bits (178), Expect = 3e-015, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 17/103 (16%) Query: 1 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNAGIVNVIDERLDKLASLIKPD 60 + + GIVG PN GKSTL S ++N + +IANY F T+ P G+V Sbjct: 159 LANVGIVGFPNSGKSTLISKLSNAKPKIANYRFTTLIPVLGVV----------------- 201 Query: 61 KVTHTTFRFVDIAGLVKGASKGEGLGNQFLANIREVDLICHVV 103 K + + F DI GL++ AS+G GLG+ FL +I +++ H++ Sbjct: 202 KYQNNSLVFADIPGLIENASEGSGLGHDFLRHIERCEILIHLI 244 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507766|ref|NP_109715.1| hypothetical protein MPN027 [Mycoplasma pneumoniae M129] (274 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507767|ref|NP_109716.1| sugar transferase [Mycoplasma pneumoniae M129] (299 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072685.1| hypothetical protein MG025 [Mycoplasma genitali... 475 e-136 ref|NP_072722.1| hypothetical protein MG060 [Mycoplasma genitali... 154 1e-039 >ref|NP_072685.1| hypothetical protein MG025 [Mycoplasma genitalium G-37] Length = 298 Score = 475 bits (1222), Expect = e-136, Method: Compositional matrix adjust. Identities = 219/298 (73%), Positives = 262/298 (87%) Query: 1 MQFKYLFTVIIPTYNCGQYIPKALDSLLLQGEYFTKTQVLIVNDGSTDNTKQIVEPYTQQ 60 M KYLFTVIIPTYNC QYI KALDSLLLQ EYF KTQVLIVNDGS DNTK++V Y + Sbjct: 1 MPSKYLFTVIIPTYNCCQYIKKALDSLLLQNEYFLKTQVLIVNDGSLDNTKEVVSDYLIK 60 Query: 61 YSNIEYLEKPNGNWGSVVNFVKQNQLAKGQYITVLDSDDYFLANAFQRVAAHFGHDMIVS 120 YSNI Y EK NGNWGSV+N+VK+N+LA GQYITVLDSDDYFL ++F++VA FGHDMI+ Sbjct: 61 YSNISYFEKTNGNWGSVINYVKKNKLALGQYITVLDSDDYFLKDSFKKVARFFGHDMIIG 120 Query: 121 AFYCYISPKRRRFLKPYFGKTGVIEQKTKLRTPHSQPLAKFYRHEIFHLLDPLKEKLFYQ 180 AFYCYI+ + RFLKPYFGKTGVI++ TKLRTPHSQP+AKFY +++F+ L LKEKLF+Q Sbjct: 121 AFYCYINENKTRFLKPYFGKTGVIKEHTKLRTPHSQPIAKFYSNKLFYELHDLKEKLFFQ 180 Query: 181 DCLLYHNAINKVQSVFYICEPLAVWYATRPGNSTTMPWNNADKFQAWCDLLKQMNLYGAG 240 DCL+YH+AIN+V+SVFY+ EPLAVW++TRPGNSTT W N +KF AWC++L++MNLYGAG Sbjct: 181 DCLMYHDAINRVESVFYLREPLAVWFSTRPGNSTTTSWENPNKFNAWCEILQKMNLYGAG 240 Query: 241 IVIYIYTMLPGFLKELKRQQLVLDLAKKPAYTWLPQPLAFLFGGLMALRTRKYIRYPK 298 IVIYIYTMLPGFLK+LK++QL+L+L KPAYTWLP+PLAF+FGGLMA +TRKYI+YPK Sbjct: 241 IVIYIYTMLPGFLKQLKKKQLILNLNHKPAYTWLPKPLAFIFGGLMAFKTRKYIKYPK 298 >ref|NP_072722.1| hypothetical protein MG060 [Mycoplasma genitalium G-37] Length = 297 Score = 154 bits (388), Expect = 1e-039, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 138/225 (61%), Gaps = 18/225 (8%) Query: 8 TVIIPTYNCGQYIPKALDSLLLQGEYFTKTQVLIVNDGSTDNTKQIVEPYTQQYSNI--E 65 +VIIPTYNC +I KA++S++ + +VLI++DGS DNT ++++ Q +N+ + Sbjct: 4 SVIIPTYNCASFIEKAINSIVKNRPNDLEIEVLIIDDGSIDNTNKVIKKIQDQINNLTLQ 63 Query: 66 YLEKPNGNWGSVVNFVKQNQLAKGQYITVLDSDDYF---LANAFQRVAAHFGHDMIVSAF 122 Y K NGNWGSV+N+V+ N+LAKG+++TVLDSDD F + FQ+ A +D I+ + Sbjct: 64 YFYKSNGNWGSVINYVRNNKLAKGEWVTVLDSDDIFSKKTISIFQKYAQKQRYDAIIFDY 123 Query: 123 Y-CYIS-----PKRRRFLKPYFGKTGVIEQKTKLRTPHSQPLAKFYRHEIFHLLDPLKEK 176 Y C+ P RF K I+ + K +TP PLAKF+++E+F+ L L+E Sbjct: 124 YKCWKKFLWKIPTYARFRKE-------IKGELKKQTPFCIPLAKFFKNEVFYQLPKLREN 176 Query: 177 LFYQDCLLYHNAINKVQSVFYICEPLAVWYATRPGNSTTMPWNNA 221 + +QD + +A+ +VF++ + ++ R GNS ++PW+++ Sbjct: 177 VGFQDAIYTMHALQIANNVFHVSKAGGYYFFKRVGNSMSIPWHSS 221 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507768|ref|NP_109717.1| elongation factor P [Mycoplasma pneumoniae M129] (190 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072686.1| elongation factor P (efp) [Mycoplasma genitaliu... 347 4e-098 >ref|NP_072686.1| elongation factor P (efp) [Mycoplasma genitalium G-37] Length = 190 Score = 347 bits (890), Expect = 4e-098, Method: Compositional matrix adjust. Identities = 165/190 (86%), Positives = 184/190 (96%) Query: 1 MADMIEAKSLRSGQTIFGPNKEILLVLENTFNKTAMRQGIVKTKVKNLRTGAIVWIEFTG 60 MA+MIEAK+LR+GQTIFGPNKEILLVLENTFNKTAMRQGIVKTKVKNLRTGAIVW+EFTG Sbjct: 1 MAEMIEAKNLRNGQTIFGPNKEILLVLENTFNKTAMRQGIVKTKVKNLRTGAIVWLEFTG 60 Query: 61 DKLEQVIIDKKKMTFLYKDGANYVFMDQQDYSQIEIPEKQLEWEKNFITEDSEVTIISYQ 120 DKLEQVIIDKKKM FLYKDG N+VFMDQ+DYSQIEI EK+LEWEKNFITE+ EVT+I+YQ Sbjct: 61 DKLEQVIIDKKKMNFLYKDGNNFVFMDQKDYSQIEINEKKLEWEKNFITEEIEVTVITYQ 120 Query: 121 SEILGVNLPELVPIEVEFAEEAVQGNTANMARKRARLVSGYELDVPQFIRTGDKIVISTI 180 EILGVNLP+LVPIEVEFAE+A+QGNTANMARK+ARLV+GYELDVPQFI TGDKIVI+T+ Sbjct: 121 DEILGVNLPDLVPIEVEFAEDAIQGNTANMARKKARLVTGYELDVPQFINTGDKIVIATV 180 Query: 181 DGSYRERYNK 190 DG+YRER+NK Sbjct: 181 DGNYRERFNK 190 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507769|ref|NP_109718.1| hypothetical protein MPN030 [Mycoplasma pneumoniae M129] (168 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072687.1| hypothetical protein MG027 [Mycoplasma genitali... 219 2e-059 >ref|NP_072687.1| hypothetical protein MG027 [Mycoplasma genitalium G-37] Length = 151 Score = 219 bits (557), Expect = 2e-059, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 121/147 (82%) Query: 22 VNGTTSKLTRTQRRIAIVEFIFATLFFLPKTADQIQAAFLDYDVPERPLNDWQKEIVKVF 81 V G T+KLTRTQRRIA+VEFIF+ LFFLPK A+ IQA FL+YD ER LN+WQK IVK F Sbjct: 5 VKGLTNKLTRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEYDTKERQLNEWQKLIVKAF 64 Query: 82 SERCVEFIELIENQQQRNQAEVQSKYNKVSGKKVDLLTKAVILCALSEQHAQATDKPLLI 141 SE F + IE QQ +NQ E+Q+KYNK+SGKK+DLLT AV+LCALSEQ A TDKPLLI Sbjct: 65 SENIFSFQKKIEEQQLKNQLEIQTKYNKISGKKIDLLTTAVVLCALSEQKAHNTDKPLLI 124 Query: 142 SEALLIMDHYSQVPEKKQTHALLDKLL 168 SEALLIMDHYSQ EKKQTHALLDKLL Sbjct: 125 SEALLIMDHYSQGAEKKQTHALLDKLL 151 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507770|ref|NP_109719.1| hypothetical protein MPN031 [Mycoplasma pneumoniae M129] (203 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072688.1| hypothetical protein MG028 [Mycoplasma genitali... 231 4e-063 >ref|NP_072688.1| hypothetical protein MG028 [Mycoplasma genitalium G-37] Length = 201 Score = 231 bits (589), Expect = 4e-063, Method: Compositional matrix adjust. Identities = 112/203 (55%), Positives = 135/203 (66%), Gaps = 2/203 (0%) Query: 1 MRRNWREHYNVFVANLALVLGFMLNIVVARYTLTGATPQARFLFLTPFLGIVAASIFYFF 60 M+RNWR+HYNVF+ANL LV GF LNI+VA+ +L TPQ RFLF+TPFLG+V ++ YFF Sbjct: 1 MKRNWRQHYNVFLANLVLVFGFALNILVAKQSLNNTTPQFRFLFVTPFLGVVIGAVLYFF 60 Query: 61 DVKWFLADYPYKKFHFQKKWTWTYLSGVFVFFXXXXXXXXXXXXXXXQMTNQILSEKYTG 120 DVKWFL DYPYKKFHFQKKW YLSGV VFF +TNQIL +Y Sbjct: 61 DVKWFLIDYPYKKFHFQKKWAIVYLSGVIVFFLNVLIGVVLLVVMVNYITNQILEREYER 120 Query: 121 LLDNAYPLLWSAVGVXXXXXXXXXXXXKTAHFKIDVEMLKAKKGEPTAADKTDSRPVVVD 180 L N+ P LWS G KTAHF ID+E+LKAKKGEPT +KTD+R VV++ Sbjct: 121 LFTNSLPYLWSTTGTSIVLSLISIGMSKTAHFFIDIEILKAKKGEPTDPNKTDNRAVVIN 180 Query: 181 LDQTKSKKDGDNPPQASGDMTSL 203 LD+ K + +PP S +MTSL Sbjct: 181 LDENKKNEKEQSPP--SAEMTSL 201 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507771|ref|NP_109720.1| hydrolase [Mycoplasma pneumoniae M129] (108 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072689.1| hypothetical protein MG029 [Mycoplasma genitali... 149 5e-039 >ref|NP_072689.1| hypothetical protein MG029 [Mycoplasma genitalium G-37] Length = 186 Score = 149 bits (377), Expect = 5e-039, Method: Compositional matrix adjust. Identities = 70/108 (64%), Positives = 85/108 (78%) Query: 1 MKKLLVIVYPDMNDVEYTNTMVVFGFVKELQTVIYHPNLSTVKGSNGVTLVNQITSKVNL 60 MKK+LVIVYP+MNDVEYTN MVVF F+K +QT YH +L + SNGV VN I + +NL Sbjct: 1 MKKILVIVYPEMNDVEYTNVMVVFSFIKTIQTTCYHHSLKKITASNGVVEVNNIVNTINL 60 Query: 61 EEFDGVFIPGGMGATKVLDHDQQLLDTIRYFKDHDKYVFAICDTPNVL 108 EFD V+IPGG+GATK LD D++LL TI YFK ++ Y+FAICDTPNVL Sbjct: 61 SEFDAVYIPGGIGATKHLDKDEKLLKTINYFKVNNLYLFAICDTPNVL 108 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507772|ref|NP_109721.1| uracil phosphoribosyltransferase [Mycoplasma pneumoniae M129] (206 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072690.1| uracil phosphoribosyltransferase (upp) [Mycopla... 337 5e-095 >ref|NP_072690.1| uracil phosphoribosyltransferase (upp) [Mycoplasma genitalium G-37] Length = 206 Score = 337 bits (865), Expect = 5e-095, Method: Compositional matrix adjust. Identities = 164/206 (79%), Positives = 184/206 (89%) Query: 1 MIKKVHHALIENELTKLRDKSSSSSQFRMALSQITSLLFFEVTKESPLEEIVVKTPFTKT 60 MIKKV HALI NELTKLRDK++++SQFRMAL+QITSLLFFE TK+ PL + V+TPF KT Sbjct: 1 MIKKVQHALILNELTKLRDKNTTTSQFRMALNQITSLLFFEATKQLPLATVEVETPFAKT 60 Query: 61 KGYKLKNEIVLVPIMRAGLGMVDPIVRYSEKIRVGHLGIYREHEGTNVISYYKKMPENIG 120 KGYKLKN+IVLVPIMRAGLGM+D IVRYS+KIRVGHLGIYR+ + T+VISYYKKMPENI Sbjct: 61 KGYKLKNDIVLVPIMRAGLGMIDAIVRYSDKIRVGHLGIYRQTQTTSVISYYKKMPENIS 120 Query: 121 NSHVIILDPMLATGTTLATAISSIKKNHPIKISVVAIVAAPEGIKAVEAAHPDVDIYLAA 180 +SHVIILDPMLATGTTL TAI SIK++ PIKISV+AIVAAPEGI VE HP VDI+LAA Sbjct: 121 DSHVIILDPMLATGTTLLTAIKSIKEDKPIKISVIAIVAAPEGINKVEKMHPHVDIFLAA 180 Query: 181 IDEKLNKDNYIIPGLGDAGDRLFGTK 206 IDEKLN + YIIPGLGDAGDRLFGTK Sbjct: 181 IDEKLNDNRYIIPGLGDAGDRLFGTK 206 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507773|ref|NP_109722.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129] (1443 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072691.1| DNA polymerase III, subunit alpha (polC-1) [Myc... 2220 0.0 >ref|NP_072691.1| DNA polymerase III, subunit alpha (polC-1) [Mycoplasma genitalium G-37] Length = 1451 Score = 2220 bits (5752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1053/1449 (72%), Positives = 1218/1449 (84%), Gaps = 10/1449 (0%) Query: 1 MVFDTETEKGKRIWALSQFLVKKNILDHNELHQLNNRIELVYLENDRENALFLVALTLKK 60 MVF+ E EK K++ ALS FL+ NILDHNEL+ L RIE +Y E +FL A+T+ + Sbjct: 1 MVFNLENEKDKKVLALSNFLIDNNILDHNELNSLIERIESIYFNKYIEEKVFLFAITISR 60 Query: 61 PLTIDIWNALYEGFQ--------DAEGAELRITFQEDATFFKDGSTKSSVTLAIIKDYFK 112 PLTIDIWNALYEGF D E +L ITF+E+ FFK ++ SSVT+AIIKDYF Sbjct: 61 PLTIDIWNALYEGFNELNEGFKADNESFKLTITFKENEPFFKSKNSFSSVTIAIIKDYFH 120 Query: 113 SFFGKDKKYRILLEQELTHPNFLSYSNHELKANCQSQELDQWLIEQRQAFIKWMHQAGFT 172 SFF KDKKY+IL+EQEL++PNFLSY N ELKA CQ++EL +WL+++ ++FI WM+ AGF Sbjct: 121 SFFSKDKKYKILIEQELSNPNFLSYENDELKAQCQTKELTEWLVQKSKSFIFWMNNAGFK 180 Query: 173 HFGFVSLFN-PPAEKQLKVKSMKVSKYDKQFETEVFSTEFVPIHKINQQMDEIKLMGQIF 231 +F F++L+ E +LKVK++ VS+YDKQFET+VF+TEF+PIHKINQQ+D++K++GQIF Sbjct: 181 NFNFIALYPIDKNESKLKVKAVTVSQYDKQFETKVFATEFIPIHKINQQIDDVKIIGQIF 240 Query: 232 ELKDFPGYNNLRNTLNIYVTDFQLGGSLILKWFYKDPKTIEGIKIGTWVKATVKVERDAK 291 ELK + TLNIYVTDFQLGGSLILKW Y D K IEGI IG W+KA ++VERD Sbjct: 241 ELKTHESLTG-KKTLNIYVTDFQLGGSLILKWSYTDEKKIEGITIGNWIKAHIQVERDPN 299 Query: 292 TQLLQGIIKEISPIETPAYYRRPDQDKQKRVELVFHTKMSAFDGINSVQEYAQFAKERDW 351 TQ+L GI++EI+P+E P Y+R D KQKRVELVFHTKM+AFDGIN ++EYAQFAKER W Sbjct: 300 TQILYGIVREINPVEIPNNYKRLDLSKQKRVELVFHTKMTAFDGINDIEEYAQFAKERGW 359 Query: 352 KTIAVTDKDNIHIYPTLYEVAKKYGLKAIYGLECNLIDDHIKIVSNPDKTKLKDATFVIF 411 K I VTDKDNIHIYP YEVAKKY LKAIYGLE NL DDHIKIV NPD TKL DATFVIF Sbjct: 360 KAITVTDKDNIHIYPKFYEVAKKYDLKAIYGLEFNLTDDHIKIVHNPDNTKLSDATFVIF 419 Query: 412 DIETTGLHGRYDSVIEFAGIKVKHNREVERMQFFLKIDGPLPAAVTEITKITQAQLEDGM 471 DIETTGLHGRYD VIEF+ K+K+N E++ QFFLKID P+P +TEITKIT LE G+ Sbjct: 420 DIETTGLHGRYDDVIEFSARKIKNNSEIDHQQFFLKIDKPIPKTITEITKITDEMLEGGI 479 Query: 472 EQQAGLEKLRAWLDGCVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDTLALSWALNPG 531 +QQ GLEK+R +LD CVMVAHNG++FDLPFLQTQFEKYNI PLTNPLIDTL LSWALNP Sbjct: 480 DQQQGLEKIRNYLDDCVMVAHNGINFDLPFLQTQFEKYNIKPLTNPLIDTLCLSWALNPL 539 Query: 532 FASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVELMGITXXXXXXXXXXX 591 F+SHTLSNIC+KLK +FDDERLHRA+YDT+ALKKVF YFK+Q++ MGI Sbjct: 540 FSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVFFYFKKQLKEMGINTLTEIDQNLNK 599 Query: 592 XCHFELLKRTFTNTGIIYIKSQSGFAKLYELLSIALTDNNATRPLVLTSTLQKFAKSFVI 651 C +L+KR FTNT I+Y+K+Q GF LYE+LSIALTD+NA RPLVL S+L KF KSF++ Sbjct: 600 KCQIDLMKRVFTNTAIVYVKNQRGFQNLYEMLSIALTDHNANRPLVLASSLAKFRKSFLL 659 Query: 652 TDNPVQGDIFKAALTKPLKELEAAIKRVDFVLIAPPGAYAGYTIREGLKKEAIPNAIKLV 711 T+NPVQGDIFKAALTKP+ ELE AI++VDFVLI+ P AY GYT+REGLKKE I +AIKLV Sbjct: 660 TENPVQGDIFKAALTKPINELEKAIEKVDFVLISQPNAYLGYTLREGLKKELINDAIKLV 719 Query: 712 VDTAQRLNKLVAVASDAYFIHPWENEYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVR 771 + TA +L KLVAVASDAYFIHPWENEYYKAIVCAKGLGG+WHRHFN KE+EQ VP VF+ Sbjct: 720 IKTATKLKKLVAVASDAYFIHPWENEYYKAIVCAKGLGGKWHRHFNNKEKEQTVPEVFLH 779 Query: 772 TTGEMLNEMSFLGEQLAYELVVENTNKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKT 831 TT EML MSFLGE +AY+LVVENTNK+ K L ++LVP + KL PPV++ SN+ L KT Sbjct: 780 TTDEMLKRMSFLGEDIAYKLVVENTNKIVKLLDLNELVPTKNKLYPPVMQDSNQKLIDKT 839 Query: 832 WSQAKAIYGDPLPKLIEQRIQEELKAIIDNGFGIIYWISHLLVKQSVQDGYFVGPRGSIG 891 W QA+ YG LPKLI++RI++EL AII NGFGI++WISHLLV+QSV+DGYFVGPRGSIG Sbjct: 840 WKQAEKRYGKNLPKLIKERIEKELNAIISNGFGIVFWISHLLVEQSVKDGYFVGPRGSIG 899 Query: 892 SSLVANLIGISEINPLVPHYLCESCQYFEVNEEVDDGYDLMVRDCPKCGAKAAFKGDGHN 951 SSL+ANLIGISEINPL HYLCE C YFEV++ VDDGYDLM+RDCPKC KA+FKGDGHN Sbjct: 900 SSLIANLIGISEINPLAAHYLCEQCHYFEVSDSVDDGYDLMIRDCPKCHEKASFKGDGHN 959 Query: 952 IPFATFMGFAGDKIPDIDLNFSSEYQAKAHAYVRELFGEQYTFRAGTIATVAEKTAYGYA 1011 IPFATFMGF+GDKIPDIDLNFSSEYQAKAH YVR+LFG TFRAGTIATVAEKTAYGYA Sbjct: 960 IPFATFMGFSGDKIPDIDLNFSSEYQAKAHDYVRKLFGVNNTFRAGTIATVAEKTAYGYA 1019 Query: 1012 RNYFEIIKQTELATAPEIERFKQKLVGIKRTTGQHPGGIMIFPNHKSVYEFTPCGYPADD 1071 RNYFEIIK+ +LAT EIERFKQKL+GIKRTTGQHPGGIMIFP+ SVYEFTPCG+PADD Sbjct: 1020 RNYFEIIKRVDLATTAEIERFKQKLIGIKRTTGQHPGGIMIFPSDHSVYEFTPCGFPADD 1079 Query: 1072 TSSDWKTTHFEYDALGNTILKLDILGQDDPTMLKHLGDLTHVNPQNIPRFDKKLTEMFWS 1131 S+WKTTHFEYDALG+ ILKLDILGQDDPTMLKHL DLT +NPQNIP FDK L MF S Sbjct: 1080 VESEWKTTHFEYDALGDAILKLDILGQDDPTMLKHLADLTKINPQNIPHFDKNLISMFSS 1139 Query: 1132 VNPLKLKPHYLDEPTGAIGIPEFGTKFVRKILEQTKPKGFGDLIRVSGLSHGKNVWADNA 1191 PL LKP +DE TGA+GIPEFGTKFVRKILEQTKPK F DLIRVSGLSHGKNVWADNA Sbjct: 1140 NKPLNLKPGIVDEVTGAVGIPEFGTKFVRKILEQTKPKDFADLIRVSGLSHGKNVWADNA 1199 Query: 1192 QKILKDQNLSLKDVIACRDDIMLYLIHKGMQAKDAFEIMEKVRKGIALNAKEVQLMQSNG 1251 QK++K L+L+DVIACRDDIMLYLI+KGMQAKDAFEIMEKVRKGI +NAKEV LMQ+ G Sbjct: 1200 QKLIKSNRLTLRDVIACRDDIMLYLINKGMQAKDAFEIMEKVRKGIKVNAKEVSLMQNCG 1259 Query: 1252 VEQHWINSCLKISYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHDVSGFK 1311 VEQ+WIN+CLKI+YLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHD++GF+ Sbjct: 1260 VEQYWINACLKINYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHDINGFE 1319 Query: 1312 SGVSFVKQKLEELNTLYRIKRIKPKEAELLTSYEVYLEMMARGIKLEQISLTHSHATRFV 1371 G F+K +L+ELN LYRIK+IKPKEAELLTSYEVYLEMMAR IKL+QIS+ +S+A FV Sbjct: 1320 KGYEFIKNRLDELNKLYRIKKIKPKEAELLTSYEVYLEMMARNIKLQQISIQNSNARMFV 1379 Query: 1372 EHNGMLIAPFITIPGMGEAVANSIIEARNEKPFSSLDDFKKRTKITKKHIEAFTQMQLLD 1431 EHNG+LIAPFITIPGMGEAVA+SI+EARNEKPF+SL+DFKKRTKITKKH+E Q+QL D Sbjct: 1380 EHNGVLIAPFITIPGMGEAVASSIVEARNEKPFASLNDFKKRTKITKKHVETMEQLQLFD 1439 Query: 1432 EFREQDNQK 1440 EF QD+ K Sbjct: 1440 EFEHQDDHK 1448 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507774|ref|NP_109723.1| hypothetical protein MPN035 [Mycoplasma pneumoniae M129] (666 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 597 e-172 ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 160 3e-041 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 158 2e-040 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 597 bits (1538), Expect = e-172, Method: Compositional matrix adjust. Identities = 305/614 (49%), Positives = 425/614 (69%), Gaps = 12/614 (1%) Query: 50 DGIFHTVKLLEPIQQSNADPAASFALFQQKFPNLKRVANSTLNTFDVYNLLSGWKSSLTA 109 D + + K+ EP+ F F+ K+ ++ + NS + DVY+LL G+K SLT Sbjct: 55 DNLMNEAKVDEPLSFE-----KRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTT 109 Query: 110 YLNQVLALQQRIKAADQIFPNQKETLPKDENPNIFEVLGAYGGKGFFPTLGSNGLHLPPQ 169 + ++V+A QQ+IK AD+IFP+ K+ PK+ENPN+ + L Y G GFFP+LG NG +LP Sbjct: 110 FFDEVIAQQQKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEA 169 Query: 170 LFQFFRDFQLSSFTIKDFEVALVSEPDIVQHDKVRYAXXXXXXXXXXXXINRNPVLFDFN 229 +FQ F DF+++ + IK+F V LVSE DI++HDKVRYA IN++ V FDF+ Sbjct: 170 VFQNFTDFRINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFD 229 Query: 230 LQLKTNNFANQTSFDELFNEKTNPLNWQFFSKLKVNHLVYEGNDITQLANTLLQSQFNVL 289 LKT+NF++ +F+E+FN K L ++F++K+ V+ L + G+D T +AN LLQ QFN+L Sbjct: 230 FILKTDNFSDIENFNEIFNRKP-ALQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLL 288 Query: 290 QLDLNKSIYRLNLNAMAQRFEHDWVQPLYAKRTQAKIAYEAEQARIAAENKRKELERQKL 349 ++DLNKSIY L+L +RF+ ++VQPLY KR +AK+A+E EQ RIA E +R+E ER ++ Sbjct: 289 EIDLNKSIYALDLENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARI 348 Query: 350 LAELKAKAEHYQKIKQARENMLKGLKSITDFVKFWKSP-DRLLVGFNKQD-DITTRAGVY 407 L ELK KAE +++K+A+ N+ K L ++ F F+ S DR+L+GF+ ++ TR G++ Sbjct: 349 LKELKEKAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLF 408 Query: 408 KALQIAYANYPQWTFYLTLQGWKNGSELLLKRPSWTNLLSDIHFQKAFNLKNTVSEQTLG 467 KALQI+Y+N+ WTFY++L GWK GS LLK+P W L D FQ AF L SEQ LG Sbjct: 409 KALQISYSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQYAFGLGPNTSEQQLG 468 Query: 468 AATLPGYGYYGLRMSDWLRWALGYYSYIHMGVPQNVQTKFTGTPDNEQQVWIANEPFEWN 527 TLPGYGY G+RMSDWLRWALGYY+ + P+NV+ G ++++ +WI+ F+ N Sbjct: 469 RVTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLN 528 Query: 528 KHYGVGPKYKDKAYRFNMEISFELEGWIAVKWWAWAFKGSIPGNWKGKLKVTHLFDGMVP 587 + YG G ++K KAYRF + ISFELEG + WW AF+GSIPG+W GKL+VTH FDG VP Sbjct: 529 REYGDGERFKGKAYRFKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVP 588 Query: 588 VWELGPVNTHLPQYSFTDQQQLLFVPHSIQKIEAIGADKGINDLLKTQNLHNLERLSYES 647 + L +T PQY TD +LLFVPHSIQ++ A+G ++ IN LL++QNLHNLER SYE+ Sbjct: 589 YYRL---HTTPPQYRLTDDMKLLFVPHSIQRVTAVG-NESINGLLRSQNLHNLERQSYEA 644 Query: 648 TNPIDLISYLLYAI 661 T PIDLISY+LYAI Sbjct: 645 TAPIDLISYMLYAI 658 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 160 bits (405), Expect = 3e-041, Method: Compositional matrix adjust. Identities = 155/533 (29%), Positives = 242/533 (45%), Gaps = 64/533 (12%) Query: 141 PNIFEVLGAYGGKGFFPTLGSNGLHLPPQLFQFFRDFQLSSFTIKDFEVALVSEPDIVQH 200 P + + + + FFP L GL++ + + F + L +KDF + LV + DIV Sbjct: 2 PKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVIK 61 Query: 201 DKVRYAXXXXXXXXXXXXINRNPVLFDFNLQLKTNNFANQTSFDELFNEKTNPLNWQFFS 260 DK+RY+ N V F+L+ +T+NF N FN N LN Q F Sbjct: 62 DKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLFW 119 Query: 261 KLKVNHLVYEG-NDITQLANTLLQSQFNVLQLDLNKSIYRLN--LNAMAQRFEHDWVQPL 317 K +N LV + ND+T +A T + + ++ S+ +++ L+ +FE + ++P Sbjct: 120 KPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPF 179 Query: 318 YAKRTQAKIAYEAEQARIAAENKRKELERQKLLAELKAKAEHYQKIKQARENMLKGLKSI 377 +R +AK YE EQ RI AE ER+K ELK K E +++K+ +E K ++ Sbjct: 180 KKEREKAKADYE-EQQRILAE------ERRKQEEELKRKEEEAKRLKEQQEQFNKSFENA 232 Query: 378 TDFVKFWKSPDRLLVGFNKQDDITTRAGVYKALQIAYANYPQWTFYLTLQGWKNGSELLL 437 +F +WK N++ D+T + + AL+ ++A TF L + Sbjct: 233 KEFKDYWK---------NQKKDVTDKTQLIDALKTSFAADKNKTFSLLIN---------- 273 Query: 438 KRPSWTNLLSDIH----FQKAFNLKNTVSEQTLGAATLPGYGYYGLRMSDWLRWALGYYS 493 S+T SD + ++ N K SE+ + P G GL MSDWLR L Y+ Sbjct: 274 ---SFTKATSDYYKNNKKDESENAKKAFSEKGI---QFPRQGLEGLYMSDWLRGKLTSYT 327 Query: 494 YIHMGVPQNVQTKFTGTPDNEQQVWIANEPFEWNKHYGVGPKYKDKAYRFNMEISFELEG 553 I + + K +N W N E+ +HY Y+F EI + +G Sbjct: 328 DIKLNL---TSIKIENKENNPTIDW-KNNGIEFRQHY---------PYKFKFEIDIKYQG 374 Query: 554 WIAVKW---WAWAFKGSIPGNWKGKLKVTHLFDGMVPVWELGPVNTHLPQYSFTDQQQLL 610 + W F G IP +W G++ V + DG + + + + F D QLL Sbjct: 375 GYKLTGLFSWFAPFSG-IPSSWNGEMDVKFIVDGDLDYNLVQNTDYPGSLFQFKD-NQLL 432 Query: 611 FVPHSIQKIEAIGADKGINDLLKTQNLHNLERLSYESTNP--IDLISYLLYAI 661 F H ++I+ D DLLK QNLHNL+ L +T P +DL SYL Y + Sbjct: 433 FTLHVKEQIKV--QDGKFMDLLKQQNLHNLD-LRNGATKPPVVDLASYLHYLV 482 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 158 bits (399), Expect = 2e-040, Method: Compositional matrix adjust. Identities = 164/617 (26%), Positives = 271/617 (43%), Gaps = 65/617 (10%) Query: 64 QSNADPAASFALFQQKFPNLKRVANSTLNTFDVYNLLSGWKSSLTAYLNQVLALQQRIKA 123 + D +F F +KF + +++ N+ L D+YNL SG+ S+ + ++ + LQ++++A Sbjct: 75 EKETDYDQNFKSFTEKFKD-EKITNNQLGIVDIYNLFSGFHKSVKSTVDLMNQLQKQVEA 133 Query: 124 ADQIFPNQKETLPKDENPN-IFEVLGAYGGKGFFPTLGSNGLHLPPQLFQFFRDFQLSSF 182 A+ IFP + + P +F+++ FP L GL++ + F + L S Sbjct: 134 ANAIFPVDDAFVKLPKVPTELFKLVD----DNVFPKLNPKGLNISDNIAALFERYNLKSI 189 Query: 183 TIKDFEVALVSEPDIVQHDKVRYAXXXXXXXXXXXXINRNPVL-FDFNLQLKTNNFANQT 241 +K+F++A + + D++ DKVRY N V+ DF L+ +T NFAN Sbjct: 190 ELKNFDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQ 249 Query: 242 SFDELFNEKTNPLNWQFFSKLKVNHLV-YEGNDITQLANTLLQSQFNVLQLDLNKSI--Y 298 F + N L+ Q F VN L GND+T +A T++ F ++L KS+ Y Sbjct: 250 DLQNTFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEY 309 Query: 299 RLNLNAMAQRFEHDWVQPLYAKRTQAKIAY----EAEQARIAAENKRKELERQKLLAELK 354 + Q FE + P +R AK AY + + + + + + Sbjct: 310 DKVQPLVKQAFEERVLTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAEEKRKAE 369 Query: 355 AKAEHYQKIKQARENMLKGLKSITDFVKFWKSPDRLLVGFNKQDDITTRAGVYKALQIAY 414 + +K ++ RE K S DF +W K D+T +A + AL+ A Sbjct: 370 EAKRNQEKARREREAYEKSFNSFKDFKFYW---------LTKGKDVTKKADLIDALKTAI 420 Query: 415 AN--YPQWTFYLTLQGWKNGSELLLKRPSWTNLLSDIHF-QKAFNLKNTVSEQTLGAATL 471 A Y TF L ++G+ +G E L + F +K + Sbjct: 421 ATPAYRNRTFSLLIKGFASGVERYFNANKNDKELKKLAFGEKGIQFPRADA--------- 471 Query: 472 PGYGYYGLRMSDWLRWALGYYSYIHMGVPQNVQTKFTGTPDNEQQVWIANEPFEWNKHYG 531 G GL MS++LR L + + + K T ++ Q W K G Sbjct: 472 ---GVNGLYMSNFLRHELTSKAKFSLNLK---DIKVENTVEDTQLYW---------KDNG 516 Query: 532 VGPKYKDKAYRFNMEISFELEGWIAVKWWAW--AFKGSIPGNWKGKLKVTHLFDGMVPVW 589 + K + Y+FN+ I + GW V WW W A IP +W G++ +T + +G + Sbjct: 517 IHLKQAN-PYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDWSGEMNLTFVVNG--DLS 573 Query: 590 ELGPVNTH-LPQ--YSFTDQQQLLFVPHSIQKIEAIGADKG-INDLLKTQNLHNLERLSY 645 E+ V+ H P + FTD+ +LLF ++ E I D LLK+QNLHNL+ S Sbjct: 574 EI--VDKHDYPGTFFQFTDKNELLF---TLAVREQIKVDNNHFMGLLKSQNLHNLQLASG 628 Query: 646 ESTNP-IDLISYLLYAI 661 + P +DL SY + + Sbjct: 629 ATKPPVVDLASYFHFVL 645 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507775|ref|NP_109724.1| hypothetical protein MPN036 [Mycoplasma pneumoniae M129] (673 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 612 e-177 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 144 2e-036 ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 133 6e-033 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 612 bits (1578), Expect = e-177, Method: Compositional matrix adjust. Identities = 316/648 (48%), Positives = 435/648 (67%), Gaps = 10/648 (1%) Query: 25 VTKTDAESPVAALHKSKSFSKNLDSFRALFVGEDIEEQLAKVQQQTPEVSFASFQQKFPD 84 + T+ + + KS S +KN + + +++ + + + E F +F+ K+ D Sbjct: 23 IVVTNTDQSIKFTSKSNSINKNNQNKELALLRDNLMNEAKVDEPLSFEKRFENFKNKYSD 82 Query: 85 KASLRNG-FQPIDVYNFLSGWKGALENFLAKVVELQKKIKAADDIFXXXXXXXXXXXXXX 143 SL N F DVY+ L G+K +L F +V+ Q+KIK AD IF Sbjct: 83 IHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVIAQQQKIKDADKIFPSTKDNPPKEENPN 142 Query: 144 VLEVLGEYGGDGFFPTLGNNGLNIPDQVFQSFNNFQIENYKISDFKVDIASERDIVQHDK 203 VL+ L Y G GFFP+LG NG N+P+ VFQ+F +F+I +YKI +F VD+ SE DI++HDK Sbjct: 143 VLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDFRINDYKIKNFNVDLVSENDIIKHDK 202 Query: 204 FRFSYVVNIGLELALLVNKRPVYFNFSLDLRTNNFSNQAGFNEIFNAPGNAATNWQFFSK 263 R+++ V + L L +NK V F+F L+T+NFS+ FNEIFN A ++F++K Sbjct: 203 VRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNFSDIENFNEIFNR--KPALQFRFYTK 260 Query: 264 VKVKQLNYDGNDSTHLANTLLQDQFNTLNLNLQKSIYELPLTEMETKFQQEYVXXXXXXX 323 + V +L+++G+DST++AN LLQDQFN L ++L KSIY L L + +F +E+V Sbjct: 261 INVHKLSFNGSDSTYIANILLQDQFNLLEIDLNKSIYALDLENAKERFDKEFVQPLYQKR 320 Query: 324 XXXXXXWDEEQKRIEAERKQKEAELARIQRELKEKAEKDAAVKQAQTNLKTALSSVEGFV 383 W+EEQ+RI E++++E E ARI +ELKEKAEKD VK+AQ NL+ AL +++ F Sbjct: 321 REAKLAWEEEQRRIAEEQRRQEEERARILKELKEKAEKDKRVKEAQNNLQKALGNLDTFF 380 Query: 384 KFWTEGEDRIKLGFTKED-NLYTRAGLVKALKISFANYRAWTFYITLLGWKAGSEKLLRK 442 F++ G+DR+ LGF N+ TR GL KAL+IS++N++ WTFYI+LLGWK GS KLL+K Sbjct: 381 NFFSSGQDRVLLGFDPNKYNVQTREGLFKALQISYSNFKTWTFYISLLGWKEGSVKLLKK 440 Query: 443 TSWTNLLSDVNFQNAFGLKNTASEEQVGKTSLPGYGYYGIRMSNWLRWALGYYANTHVGS 502 W L D FQ AFGL SE+Q+G+ +LPGYGY GIRMS+WLRWALGYY + + Sbjct: 441 PIWNALRDDKAFQYAFGLGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWALGYYTSFTLSP 500 Query: 503 PQNVKATIDGNPSDTTKVWIAPEDFKQGVHIGVGEHFKGKAYKFKFEVSFELEGSIAAHW 562 P+NV+A + G+ +D +WI+P FK G GE FKGKAY+FK +SFELEG + AHW Sbjct: 501 PKNVEANLIGDANDKKHIWISPHTFKLNREYGDGERFKGKAYRFKLSISFELEGHLTAHW 560 Query: 563 WTLALRGNIPGYWKGKLQVTHTFDGDVPSWYYGSVHTHAPEYRFTEDNKLLFVPHSIQKI 622 WT+A RG+IPG W GKL+VTH FDGDVP Y +HT P+YR T+D KLLFVPHSIQ++ Sbjct: 561 WTIAFRGSIPGSWSGKLRVTHEFDGDVP---YYRLHTTPPQYRLTDDMKLLFVPHSIQRV 617 Query: 623 TAVGGDSNGVNGLLKSQNLHNLERQSYEVTAPIDLVSYLMFAIA-KEP 669 TAVG +S +NGLL+SQNLHNLERQSYE TAPIDL+SY+++AI+ K+P Sbjct: 618 TAVGNES--INGLLRSQNLHNLERQSYEATAPIDLISYMLYAISDKKP 663 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 144 bits (364), Expect = 2e-036, Method: Compositional matrix adjust. Identities = 160/621 (25%), Positives = 268/621 (43%), Gaps = 77/621 (12%) Query: 74 SFASFQQKFPDKASLRNGFQPIDVYNFLSGWKGALENFLAKVVELQKKIKAADDIFXXXX 133 +F SF +KF D+ N +D+YN SG+ ++++ + + +LQK+++AA+ IF Sbjct: 83 NFKSFTEKFKDEKITNNQLGIVDIYNLFSGFHKSVKSTVDLMNQLQKQVEAANAIFPVDD 142 Query: 134 XXXXXXXXXXVLEVLGEYGGDGFFPTLGNNGLNIPDQVFQSFNNFQIENYKISDFKVDIA 193 L L + D FP L GLNI D + F + +++ ++ +F + Sbjct: 143 AFVKLPKVPTELFKLVD---DNVFPKLNPKGLNISDNIAALFERYNLKSIELKNFDLAFL 199 Query: 194 SERDIVQHDKFRFSYVVNIGLELALLVNKRPVY-FNFSLDLRTNNFSNQAGFNEIFNAPG 252 + D++ DK R+++ + + + + V +F+L +T NF+N F G Sbjct: 200 RKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVG 259 Query: 253 NAATNWQFFSKVKVKQLNYDGNDSTHLANTLLQDQFNTLNLNLQKSIYEL----PLTE-- 306 N + F+ K + GND TH+A T++ + F N+NL KS+ E PL + Sbjct: 260 NDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQA 319 Query: 307 ----METKF--QQEYVXXXXXXXXXXXXXWDEEQKRIEAERKQKEAELARIQRELKEKAE 360 + T F ++E + Q R+ +E A + +EKA Sbjct: 320 FEERVLTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAEEKRKAEEAKRNQEKAR 379 Query: 361 KDAAVKQAQTNLKTALSSVEGFVKFW-TEGEDRIKLGFTKEDNLYTRAGLVKALKISFAN 419 ++ + N S + F +W T+G+D K +A L+ ALK + A Sbjct: 380 REREAYEKSFN------SFKDFKFYWLTKGKDVTK-----------KADLIDALKTAIAT 422 Query: 420 --YRAWTFYITLLGWKAGSEKLLRKTSWTNLLSDVNFQNAFGLKNTASEEQVGKTSLPGY 477 YR TF + + G+ +G E+ +N LK A E+ + Sbjct: 423 PAYRNRTFSLLIKGFASGVERYFNAN-----------KNDKELKKLAFGEKGIQFPRADA 471 Query: 478 GYYGIRMSNWLRWALGYYANTHVGSPQNVKATIDGNPSDTTKVWIAPEDFKQGVHIGVGE 537 G G+ MSN+LR L A + + +++K ++ DT W G+H+ Sbjct: 472 GVNGLYMSNFLRHELTSKAKFSL-NLKDIK--VENTVEDTQLYWK-----DNGIHLK--- 520 Query: 538 HFKGKAYKFKFEVSFELEGSIAAHWWT--LALRGNIPGYWKGKLQVTHTFDGDVPSW--- 592 + YKF + + G HWW A IP W G++ +T +GD+ Sbjct: 521 --QANPYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDWSGEMNLTFVVNGDLSEIVDK 578 Query: 593 --YYGSVHTHAPEYRFTEDNKLLFVPHSIQKITAVGGDSNGVNGLLKSQNLHNLERQSYE 650 Y G+ ++FT+ N+LLF ++I D+N GLLKSQNLHNL+ S Sbjct: 579 HDYPGTF------FQFTDKNELLFTLAVREQIKV---DNNHFMGLLKSQNLHNLQLASGA 629 Query: 651 VTAP-IDLVSYLMFAIAKEPT 670 P +DL SY F + E + Sbjct: 630 TKPPVVDLASYFHFVLLTEKS 650 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 133 bits (334), Expect = 6e-033, Method: Compositional matrix adjust. Identities = 137/527 (25%), Positives = 229/527 (43%), Gaps = 65/527 (12%) Query: 150 EYGGDGFFPTLGNNGLNIPDQVFQSFNNFQIENYKISDFKVDIASERDIVQHDKFRFSYV 209 ++ + FFP L GLNI + + + FN + ++ ++ DF +++ + DIV DK R+S+ Sbjct: 10 KFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVIKDKIRYSFE 69 Query: 210 VNIGLELALLVNKRPVYFNFSLDLRTNNFSNQAGFNEIFNAPGNAATNWQFFSKVKVKQL 269 + + E+ V F L +T+NF N FN GN F+ + K + Sbjct: 70 IKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLFWKPLINKLV 127 Query: 270 NYDGNDSTHLANTLLQDQFNTLNLNLQKSIYELP--LTEMETKFQQEYVXXXXXXXXXXX 327 + + ND T +A T + D N N+ S+ ++ L +TKF++E + Sbjct: 128 DKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPFKKEREKAK 187 Query: 328 XXWDEEQKRIEAERKQKEAELARIQRELKEKAEKDAAVKQAQTNLKTALSSVEGFVKFWT 387 + EEQ+RI AE ++K+ E + + E ++ +K+ Q + + + F +W Sbjct: 188 ADY-EEQQRILAEERRKQEEELKRKEEEAKR------LKEQQEQFNKSFENAKEFKDYWK 240 Query: 388 EGEDRIKLGFTKEDNLYTRAGLVKALKISFANYRAWTFYITLLGWKAGSEKLLRKTSWTN 447 ++ ++ + L+ ALK SFA + TF + + S+T Sbjct: 241 ----------NQKKDVTDKTQLIDALKTSFAADKNKTFSLLI-------------NSFTK 277 Query: 448 LLSDVNFQN----AFGLKNTASEEQVGKTSLPGYGYYGIRMSNWLRWALGYYANTHVGSP 503 SD N + K SE+ + P G G+ MS+WLR L Y + + Sbjct: 278 ATSDYYKNNKKDESENAKKAFSEKGI---QFPRQGLEGLYMSDWLRGKLTSYTDIKLNL- 333 Query: 504 QNVKATIDGNPSDTTKVWIAPEDFKQGVHIGVGEHFKGKAYKFKFEVSFELEGS---IAA 560 I+ ++ T W + I +H+ YKFKFE+ + +G Sbjct: 334 --TSIKIENKENNPTIDW-------KNNGIEFRQHY---PYKFKFEIDIKYQGGYKLTGL 381 Query: 561 HWWTLALRGNIPGYWKGKLQVTHTFDGDVPSWYYGSVHTHAPEYRFT-EDNKLLFVPHSI 619 W G IP W G++ V DGD+ Y +T P F +DN+LLF H Sbjct: 382 FSWFAPFSG-IPSSWNGEMDVKFIVDGDLD--YNLVQNTDYPGSLFQFKDNQLLFTLHVK 438 Query: 620 QKITAVGGDSNGVNGLLKSQNLHNLERQSYEVTAP-IDLVSYLMFAI 665 ++I G LLK QNLHNL+ ++ P +DL SYL + + Sbjct: 439 EQIKVQDG---KFMDLLKQQNLHNLDLRNGATKPPVVDLASYLHYLV 482 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507776|ref|NP_109725.1| hypothetical protein MPN037 [Mycoplasma pneumoniae M129] (147 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507777|ref|NP_109726.1| hypothetical protein MPN038 [Mycoplasma pneumoniae M129] (116 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507778|ref|NP_109727.1| hypothetical protein MPN039 [Mycoplasma pneumoniae M129] (338 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 255 3e-070 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 94 3e-021 ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 79 7e-017 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 255 bits (652), Expect = 3e-070, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 216/338 (63%), Gaps = 8/338 (2%) Query: 1 MTKLPKLLLGLTFSVSLIPFSSLLITSTDVNKQPVPTALQRTGASAIHEGSFQTITLGQS 60 M + KL LGL +L P +++T+TD Q + + + ++ + L + Sbjct: 1 MKTIHKLFLGLCLPATLGPLLGIVVTNTD---QSIKFTSKSNSINKNNQNK-ELALLRDN 56 Query: 61 LMEQIEQLQQFTPAQRFTQFKKKFPNQKLLSQSELSPVDVYNFLSGWQDALVSFLDRVIK 120 LM + + + + +RF FK K+ + L+ S S DVY+ L G++ +L +F D VI Sbjct: 57 LMNEAKVDEPLSFEKRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVIA 116 Query: 121 LQGKVKEANEIFNPNVGDQIVLPKKENPNVLEVLGEYNGFGFFPTLGKNGLNLPQQIFEN 180 Q K+K+A++IF P+ D PK+ENPNVL+ L Y G GFFP+LGKNG NLP+ +F+N Sbjct: 117 QQQKIKDADKIF-PSTKDNP--PKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQN 173 Query: 181 FTDFKVESYQINDFKVSLVGERDIIKNDKVRFSYAVQIPLNLELLVNNQKVTFNITVDLR 240 FTDF++ Y+I +F V LV E DIIK+DKVR+++ V+ + L L +N V F+ L+ Sbjct: 174 FTDFRINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILK 233 Query: 241 TNNFSTQETFNDLFNNGTAPTNWQFFSRIKVNKLHYDQTDATHLANTLLQDQFNALNLDL 300 T+NFS E FN++FN A ++F+++I V+KL ++ +D+T++AN LLQDQFN L +DL Sbjct: 234 TDNFSDIENFNEIFNRKPA-LQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDL 292 Query: 301 QKSIYDLNLDDLEERFEEEYAKPLREKRTQQKKEWEEE 338 KSIY L+L++ +ERF++E+ +PL +KR + K WEEE Sbjct: 293 NKSIYALDLENAKERFDKEFVQPLYQKRREAKLAWEEE 330 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 93.6 bits (231), Expect = 3e-021, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 140/266 (52%), Gaps = 13/266 (4%) Query: 75 QRFTQFKKKFPNQKLLSQSELSPVDVYNFLSGWQDALVSFLDRVIKLQGKVKEANEIFNP 134 Q F F +KF ++K+ + ++L VD+YN SG+ ++ S +D + +LQ +V+ AN IF P Sbjct: 82 QNFKSFTEKFKDEKI-TNNQLGIVDIYNLFSGFHKSVKSTVDLMNQLQKQVEAANAIF-P 139 Query: 135 NVGDQIV-LPKKENPNVLEVLGEYNGFGFFPTLGKNGLNLPQQIFENFTDFKVESYQIND 193 V D V LPK P L L + N FP L GLN+ I F + ++S ++ + Sbjct: 140 -VDDAFVKLPKV--PTELFKLVDDN---VFPKLNPKGLNISDNIAALFERYNLKSIELKN 193 Query: 194 FKVSLVGERDIIKNDKVRFSYAVQIPL-NLELLVNNQKVTFNITVDLRTNNFSTQETFND 252 F ++ + + D+I DKVR+++ +Q+ + + N + + T+ +T NF+ + + Sbjct: 194 FDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQN 253 Query: 253 LFNNGTAPTNWQFFSRIKVNKLHYDQ-TDATHLANTLLQDQFNALNLDLQKSI--YDLNL 309 F + Q F VNKL + D TH+A T++ + F N++L KS+ YD Sbjct: 254 TFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQ 313 Query: 310 DDLEERFEEEYAKPLREKRTQQKKEW 335 +++ FEE P +++R KK + Sbjct: 314 PLVKQAFEERVLTPFKKEREAAKKAY 339 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 79.0 bits (193), Expect = 7e-017, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 5/180 (2%) Query: 162 FFPTLGKNGLNLPQQIFENFTDFKVESYQINDFKVSLVGERDIIKNDKVRFSYAVQIPLN 221 FFP L GLN+ + I E F + ++ Q+ DF + LV + DI+ DK+R+S+ +++ Sbjct: 16 FFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVIKDKIRYSFEIKMDFE 75 Query: 222 LELLVNNQKVTFNITVDLRTNNFSTQETFNDLFNNGTAPTNWQFFSRIKVNKL-HYDQTD 280 ++ N V + +T+NF + + FN T Q F + +NKL +Q D Sbjct: 76 VDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFNGNDLNT--QLFWKPLINKLVDKNQND 133 Query: 281 ATHLANTLLQDQFNALNLDLQKSIY--DLNLDDLEERFEEEYAKPLREKRTQQKKEWEEE 338 T +A T + D N ++ S+ D LD + +FE+E +P +++R + K ++EE+ Sbjct: 134 LTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPFKKEREKAKADYEEQ 193 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507779|ref|NP_109728.1| hypothetical protein MPN040 [Mycoplasma pneumoniae M129] (103 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507780|ref|NP_109729.1| hypothetical protein MPN041 [Mycoplasma pneumoniae M129] (186 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 152 2e-039 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 152 bits (385), Expect = 2e-039, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 112/184 (60%), Gaps = 8/184 (4%) Query: 1 MRDAIDKYATYSVSRLNNVTTYLPGKVDGSGKDQIWISPNNFQVNREWGNGAHFKDKAYR 60 +R A+ Y ++++S NV L G D + K IWISP+ F++NRE+G+G FK KAYR Sbjct: 486 LRWALGYYTSFTLSPPKNVEANLIG--DANDKKHIWISPHTFKLNREYGDGERFKGKAYR 543 Query: 61 FNFDVKVEYDVEVKAAWWTALFRGSIPGYWKGKFKVTYSFNGEVPSWNYGDKQVRPPQYS 120 F + E + + A WWT FRGSIPG W GK +VT+ F+G+VP Y PPQY Sbjct: 544 FKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVP---YYRLHTTPPQYR 600 Query: 121 FKEQEKQLLFVPRHVQKIEAEGKHLEIINPFLKDQHLDFFEHYHPDLTQPLDMVSYLMYA 180 + K LLFVP +Q++ A G E IN L+ Q+L E + T P+D++SY++YA Sbjct: 601 LTDDMK-LLFVPHSIQRVTAVGN--ESINGLLRSQNLHNLERQSYEATAPIDLISYMLYA 657 Query: 181 IADK 184 I+DK Sbjct: 658 ISDK 661 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507781|ref|NP_109730.1| hypothetical protein MPN042 [Mycoplasma pneumoniae M129] (672 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 512 e-147 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 111 2e-026 ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 108 1e-025 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 512 bits (1319), Expect = e-147, Method: Compositional matrix adjust. Identities = 274/673 (40%), Positives = 414/673 (61%), Gaps = 14/673 (2%) Query: 1 MKKLHKIXXXXXXXXXXXXXXXFISTDADNSQFSLKKSSTEIKGTQSIHLLNLGESLTEE 60 MK +HK+ + T+ D S KS++ K Q+ L L ++L E Sbjct: 1 MKTIHKLFLGLCLPATLGPLLGIVVTNTDQSIKFTSKSNSINKNNQNKELALLRDNLMNE 60 Query: 61 IKEAQKRTPETSFASFKQKFPNKESFVKG-FQPIDVYNLLSGWKDAISSFLDKVVELQKK 119 K + + E F +FK K+ + S F DVY+LL G+K ++++F D+V+ Q+K Sbjct: 61 AKVDEPLSFEKRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVIAQQQK 120 Query: 120 IEEANKIFNTNIGNQIDLPEDENPNVLNVLGSYGGEGFFPTLGKNGLNLPQQIFENFTDF 179 I++A+KIF + N P++ENPNVL+ L +Y G GFFP+LGKNG NLP+ +F+NFTDF Sbjct: 121 IKDADKIFPSTKDNP---PKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDF 177 Query: 180 KVVSHKIHDFQVSLVGERDIIKNDKVRFSYAVQIPLNLELLVNNQKVTFNITVDLRTNNF 239 ++ +KI +F V LV E DIIK+DKVR+++ V+ + L L +N V F+ L+T+NF Sbjct: 178 RINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNF 237 Query: 240 STQETFNELFNKCIGPVNWQFFSRVKVDKLHYDQTDATHLANTLLQDQFNALNLDLEKSI 299 S E FNE+FN+ + ++F++++ V KL ++ +D+T++AN LLQDQFN L +DL KSI Sbjct: 238 SDIENFNEIFNRKPA-LQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDLNKSI 296 Query: 300 YDLELPRLEAEFQQKYVDPLIEKKQRQKAXXXXXXXXXXXXXXXXXXXXXXXXXIQAEKA 359 Y L+L + F +++V PL +K++ K EKA Sbjct: 297 YALDLENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKEKA 356 Query: 360 KNDEQLQKPQTELKKALGGIDSFVEFFTNNDLRLKLGYTKED-NVRTRAGLFRALEVSFG 418 + D+++++ Q L+KALG +D+F FF++ R+ LG+ NV+TR GLF+AL++S+ Sbjct: 357 EKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQISYS 416 Query: 419 NYRAWTFYITLLGWKDTTEKIFKKAKWQDIRDDEKFRKAFGLSPKATEKDVGKVTNPGYG 478 N++ WTFYI+LLGWK+ + K+ KK W +RDD+ F+ AFGL P +E+ +G+VT PGYG Sbjct: 417 NFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQYAFGLGPNTSEQQLGRVTLPGYG 476 Query: 479 YQGIYIKDSLRDGIAKYSDSTVSEPKNVKVSLPGTVGDNEEGKIWIASHNFRQNHEWGAG 538 Y+GI + D LR + Y+ T+S PKNV+ +L G D + IWI+ H F+ N E+G G Sbjct: 477 YEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKH--IWISPHTFKLNREYGDG 534 Query: 539 EKFKYSAYRFKFDVTVDYDVEVSAKWWTWAFRGSIPGYWRGKFKVTYSFDGVVPSWKYGH 598 E+FK AYRFK ++ + + ++A WWT AFRGSIPG W GK +VT+ FDG VP Y Sbjct: 535 ERFKGKAYRFKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVP---YYR 591 Query: 599 IQVRTPQYSFNKQEQKILFVPHAIQKIAAEGSNLDLINPFLKDQKLDEFEHYHPDLTKPL 658 + PQY + K+LFVPH+IQ++ A G+ + IN L+ Q L E + T P+ Sbjct: 592 LHTTPPQYRLT-DDMKLLFVPHSIQRVTAVGN--ESINGLLRSQNLHNLERQSYEATAPI 648 Query: 659 DLVAYLLYAITTR 671 DL++Y+LYAI+ + Sbjct: 649 DLISYMLYAISDK 661 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 111 bits (278), Expect = 2e-026, Method: Compositional matrix adjust. Identities = 133/575 (23%), Positives = 246/575 (42%), Gaps = 68/575 (11%) Query: 35 LKKSSTEIKGTQSIHLLNLGESLT-EEIKEAQKRTP-ETSFASFKQKFPNKESFVKGFQP 92 L K+S + G+ L + + ++ +K T + +F SF +KF +++ Sbjct: 44 LSKNSADFLGSSKRSLAGFDTPFSPDNLQYLEKETDYDQNFKSFTEKFKDEKITNNQLGI 103 Query: 93 IDVYNLLSGWKDAISSFLDKVVELQKKIEEANKIFNTNIGNQIDLPEDENPNVLNVLGSY 152 +D+YNL SG+ ++ S +D + +LQK++E AN IF +D + P V L Sbjct: 104 VDIYNLFSGFHKSVKSTVDLMNQLQKQVEAANAIF------PVDDAFVKLPKVPTELFKL 157 Query: 153 GGEGFFPTLGKNGLNLPQQIFENFTDFKVVSHKIHDFQVSLVGERDIIKNDKVRFSYAVQ 212 + FP L GLN+ I F + + S ++ +F ++ + + D+I DKVR+++ +Q Sbjct: 158 VDDNVFPKLNPKGLNISDNIAALFERYNLKSIELKNFDLAFLRKADVIIKDKVRYNFEMQ 217 Query: 213 IPL-NLELLVNNQKVTFNITVDLRTNNFSTQETFNELFNKCIGPVNWQFFSRVKVDKLHY 271 + + + N + + T+ +T NF+ + F K ++ Q F V+KL Sbjct: 218 MQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTD 277 Query: 272 DQ-TDATHLANTLLQDQFNALNLDLEKSI--YDLELPRLEAEFQQKYVDPLIEKKQRQKA 328 + D TH+A T++ + F N++L KS+ YD P ++ F+++ + P KK+R+ A Sbjct: 278 NAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQAFEERVLTPF--KKEREAA 335 Query: 329 XXX------XXXXXXXXXXXXXXXXXXXXXXIQAEKAKNDEQLQKPQTELKKALGGIDSF 382 E +N E+ ++ + +K+ F Sbjct: 336 KKAYEEEQRRLEEERKRQLEELRRREAEEKRKAEEAKRNQEKARREREAYEKSFNSFKDF 395 Query: 383 VEFFTNNDLRLKLGYTKEDNVRTRAGLFRALEVSFGN--YRAWTFYITLLGWKDTTEKIF 440 ++ TK +V +A L AL+ + YR TF + + G+ E+ F Sbjct: 396 KFYW----------LTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGVERYF 445 Query: 441 KKAKWQDIRDDEKFRKAFGLSPKATEKDVGKVTNPGYGYQGIYIKDSLRDGIAKYSDSTV 500 K D E + AFG EK + + G G+Y+ + LR + + ++ Sbjct: 446 NANK----NDKELKKLAFG------EKGI-QFPRADAGVNGLYMSNFLRHELTSKAKFSL 494 Query: 501 SEPKNVKVSLPGTVGDNE----EGKIWIASHNFRQNHEWGAGEKFKYSAYRFKFDVTVDY 556 + K++KV TV D + + I + N Y+F ++ + Y Sbjct: 495 N-LKDIKVE--NTVEDTQLYWKDNGIHLKQAN----------------PYKFNLNIKIKY 535 Query: 557 DVEVSAKWWTW--AFRGSIPGYWRGKFKVTYSFDG 589 + + WW W A IP W G+ +T+ +G Sbjct: 536 NGWYNVHWWNWLPAKILGIPTDWSGEMNLTFVVNG 570 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 108 bits (270), Expect = 1e-025, Method: Compositional matrix adjust. Identities = 131/540 (24%), Positives = 233/540 (43%), Gaps = 73/540 (13%) Query: 143 PNVLNVLGSYGGEGFFPTLGKNGLNLPQQIFENFTDFKVVSHKIHDFQVSLVGERDIIKN 202 P V + E FFP L GLN+ + I E F + + ++ DF + LV + DI+ Sbjct: 2 PKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVIK 61 Query: 203 DKVRFSYAVQIPLNLELLVNNQKVTFNITVDLRTNNFSTQETFNELFNKCIGPVNWQFFS 262 DK+R+S+ +++ ++ N V + +T+NF + FN +N Q F Sbjct: 62 DKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFNG--NDLNTQLFW 119 Query: 263 RVKVDKL-HYDQTDATHLANTLLQDQFNALNLDLEKSIY--DLELPRLEAEFQQKYVDPL 319 + ++KL +Q D T +A T + D N ++ S+ D +L + +F+++ ++P Sbjct: 120 KPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPF 179 Query: 320 IEKKQRQKAXXXXXXXXXXXXXXXXXXXXXXXXXIQAEKAKNDEQLQKPQTELKKALGGI 379 KK+R+KA K + ++L++ Q + K+ Sbjct: 180 --KKEREKAKADYEEQQRILAEERRKQEEE-----LKRKEEEAKRLKEQQEQFNKSFENA 232 Query: 380 DSFVEFFTNNDLRLKLGYTKEDNVRTRAGLFRALEVSFGNYRAWTFYITLLGWKDTTEKI 439 F +++ N ++ +V + L AL+ SF + TF + + + T Sbjct: 233 KEFKDYWKN----------QKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDY 282 Query: 440 FKKAKWQDIRDDEKFRKAFGLSPKATEKDVGKVTNPGYGYQGIYIKDSLRDGIAKYSDST 499 +K K + E +KAF +EK + P G +G+Y+ D LR + Y+D Sbjct: 283 YKNNKKD---ESENAKKAF------SEKG---IQFPRQGLEGLYMSDWLRGKLTSYTD-- 328 Query: 500 VSEPKNVKVSLPGTVGDNEEGKIWIASHN----FRQNHEWGAGEKFKYSAYRFKFDVTVD 555 +K++L +N+E I N FRQ++ Y+FKF++ + Sbjct: 329 ------IKLNLTSIKIENKENNPTIDWKNNGIEFRQHY-----------PYKFKFEIDIK 371 Query: 556 YD--VEVSAKW-WTWAFRGSIPGYWRGKFKVTYSFDGVVPSWKYGHIQ-VRTPQYSFNKQ 611 Y +++ + W F G IP W G+ V + DG + Y +Q P F + Sbjct: 372 YQGGYKLTGLFSWFAPFSG-IPSSWNGEMDVKFIVDGDLD---YNLVQNTDYPGSLFQFK 427 Query: 612 EQKILFVPHAIQKIAAE-GSNLDLINPFLKDQKLDEFEHYHPDLTKP--LDLVAYLLYAI 668 + ++LF H ++I + G +DL LK Q L + TKP +DL +YL Y + Sbjct: 428 DNQLLFTLHVKEQIKVQDGKFMDL----LKQQNLHNLD-LRNGATKPPVVDLASYLHYLV 482 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507782|ref|NP_109731.1| glycerol uptake facilitator [Mycoplasma pneumoniae M129] (264 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072693.1| glycerol uptake facilitator (glpF) [Mycoplasma ... 262 3e-072 >ref|NP_072693.1| glycerol uptake facilitator (glpF) [Mycoplasma genitalium G-37] Length = 258 Score = 262 bits (669), Expect = 3e-072, Method: Compositional matrix adjust. Identities = 132/254 (51%), Positives = 176/254 (69%), Gaps = 9/254 (3%) Query: 8 SELPRWIGAEFLGTFFLILSGNGAGSQLTLNKMFAKESKAKLLTAAFAWGIAVLVGVLIA 67 ++L W AE +GTF LI+ GNGA +Q+ L KM E+KAK LT A WGI VL GVL A Sbjct: 7 TQLGWWFLAELIGTFILIIFGNGAVAQVNLKKMATSETKAKFLTVALTWGIGVLFGVLTA 66 Query: 68 NSLFEGAGNINPAVSLFYAVSGTIQKALYPLHVNFSIPXXXXXXXXXXXXQFAGAMLAQA 127 N++F+G+G++NPA+SLFYA++G+I+ + F I QF GAM+AQ Sbjct: 67 NAIFKGSGHLNPAISLFYAINGSIKSPTALIWPGFVI---------GILAQFLGAMIAQT 117 Query: 128 LLNFLFWKHIEQTDPQSVLVTHCTNPAIFNIPRNFATEFVATSVLIASLLVAGSFGANRF 187 LNFLFWK + TDPQ+VL HCT+P++FNI RNF TEF+AT +LI ++ A F N Sbjct: 118 TLNFLFWKQLSSTDPQTVLAMHCTSPSVFNITRNFLTEFIATLILIGGVVAASHFLHNNP 177 Query: 188 DQSPRGVVPMLVVTGLIMSFGAATGTAINPARDLGPRIVYWLSPIKNKDPNLKYSWIPVA 247 + P G + + +V G+I++FG ATG+AINPARDLG RIV+ L+PIKNKD N KYSWIPV Sbjct: 178 NSVPPGFMGLWLVAGIIIAFGGATGSAINPARDLGTRIVFQLTPIKNKDANWKYSWIPVI 237 Query: 248 APLSASVILGVLVA 261 APLSA ++L +++ Sbjct: 238 APLSAGLVLSIIIG 251 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507783|ref|NP_109732.1| thymidine kinase [Mycoplasma pneumoniae M129] (191 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072694.1| thymidine kinase (tdk) [Mycoplasma genitalium G... 277 5e-077 >ref|NP_072694.1| thymidine kinase (tdk) [Mycoplasma genitalium G-37] Length = 213 Score = 277 bits (709), Expect = 5e-077, Method: Compositional matrix adjust. Identities = 130/181 (71%), Positives = 153/181 (84%), Gaps = 2/181 (1%) Query: 9 QSPRGWIEVICGPMFSGKTEELLRKIKRWKLAKIPVIIFKPKIDTRQQHLVKSRNGHSDE 68 Q+ +GW EVICGPMFSGKTE+LL KIKRWK+AKI V+IFKP IDTRQ ++VKSRNG D+ Sbjct: 9 QTKKGWTEVICGPMFSGKTEKLLHKIKRWKIAKISVVIFKPIIDTRQTNIVKSRNGEYDQ 68 Query: 69 AIEINSPLEIYDYLTKDRFDVVAIDEAQFFSSEIVEVVKSLNDLGINVIVSGLDTDFRAE 128 AI INSP EIYD+L + +VAIDEAQFFS+EI+EVV +LN++G NVI+SGLDTDFRAE Sbjct: 69 AITINSPFEIYDHLVDKNYQIVAIDEAQFFSNEIIEVVTTLNEIGTNVIISGLDTDFRAE 128 Query: 129 PFGSIPQLLAIADKICKLDAVCNVCGQLAQRTQRIVSK--SNETVLIGDIEAYEPRCKLH 186 PFG IPQLLAIAD + KLDA+CNVCG LAQRTQR+V+K ++ VLIGD EAYE RCKLH Sbjct: 129 PFGCIPQLLAIADVVNKLDAICNVCGSLAQRTQRLVNKNTNDNLVLIGDAEAYEARCKLH 188 Query: 187 Q 187 Sbjct: 189 H 189 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507784|ref|NP_109733.1| histidyl-tRNA synthetase [Mycoplasma pneumoniae M129] (414 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072695.1| histidyl-tRNA synthetase [Mycoplasma genitalium... 528 e-152 >ref|NP_072695.1| histidyl-tRNA synthetase [Mycoplasma genitalium G-37] Length = 414 Score = 528 bits (1360), Expect = e-152, Method: Compositional matrix adjust. Identities = 247/414 (59%), Positives = 312/414 (75%) Query: 1 MSVLQKPRGVKDWYGEELIYFNWTVHQITNLAWKWGFSEVKTPLLEYAEAFKRTNANADI 60 M+ LQKPRGVKDW+G+EL+YFNW V +I +LA+ WGFSEVKTPL E A+ F+R+NANADI Sbjct: 1 MNFLQKPRGVKDWFGDELVYFNWIVKKIRSLAFNWGFSEVKTPLFENAQLFQRSNANADI 60 Query: 61 VKKELYEFHDKSNRLLALRPEATAGIVRLVCENKLLQPQNYPLRLFTIGTMYRYERPQSN 120 V+KELY+F DKS R LALRPEAT IVRL CENKL+Q N+PL+LF IG+MYRYERPQ+N Sbjct: 61 VQKELYQFFDKSQRELALRPEATTPIVRLACENKLMQEANFPLKLFCIGSMYRYERPQNN 120 Query: 121 RYREHYQFSCEVIGDTNPTVLLDTLLLGHAIIQQLGIEGVILKLNNLGNSATIQQWNQAL 180 R+REH+QFSCEV G +N + LDTLL +++++ LGI G +LK+NNL N T+ +WN+AL Sbjct: 121 RFREHWQFSCEVFGFSNLFIFLDTLLFANSLLEALGITGYVLKINNLANFETLSKWNKAL 180 Query: 181 QAYLTQFKAQLTELSQSRLSTNPLRILDDKVDGQLPFISDAPQIEQFLDAEXXXXXXXXX 240 + YLT +K +LTELSQ RL NPLRILDDK+D + F+ +AP+I FLDA Sbjct: 181 KDYLTPYKLELTELSQKRLEKNPLRILDDKIDQKKSFVKNAPKITDFLDASAKQDSELLK 240 Query: 241 XXXXXXXVPFEWNPTLVRGLDYYTGVVFEFVKDDTTVLAGGVYDNLVEELGGTPTKALGF 300 + FEW LVRGLDYYTG VFE+VK+ T+LAGGVYDNLVEEL PT ALGF Sbjct: 241 TQLKKHNISFEWTDNLVRGLDYYTGFVFEYVKNQDTILAGGVYDNLVEELSSNPTPALGF 300 Query: 301 ACGIERSINCLSAVKKQAILANQPPRLLVIGLTEAALEKLLQLSLGWRAYHPVTIYPKVI 360 ACGIER INCL KK IL +P ++LVI L E ALE+L+ L+ WR Y+ VTIYPKVI Sbjct: 301 ACGIERLINCLEIDKKAFILNTKPKQMLVICLFEEALEELVWLAKLWREYNQVTIYPKVI 360 Query: 361 RIINGIRAAQRLGYRFLGVIGGNNLEQQTITVKDLATEQQTTYTWDEFRQRQVL 414 ++ NGIR A RLGY F+G++G + +++ IT+K+L ++QQT YTW+E +R V Sbjct: 361 KVDNGIRLANRLGYTFIGIVGKTDFDKKAITIKNLVSKQQTIYTWNELGERNVF 414 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507785|ref|NP_109734.1| aspartyl-tRNA synthetase [Mycoplasma pneumoniae M129] (557 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072696.1| aspartyl-tRNA synthetase (aspS) [Mycoplasma gen... 796 0.0 ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycoplasma genita... 60 6e-011 >ref|NP_072696.1| aspartyl-tRNA synthetase (aspS) [Mycoplasma genitalium G-37] Length = 550 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/550 (67%), Positives = 450/550 (81%), Gaps = 1/550 (0%) Query: 8 CFKQRVFIGNLTSEHLNKTVTIAGWVKRIKKLGELNFVIVGDKTNTIQVTCKNKEQVKYL 67 CF QR+ IG++++E LNKT+ I GW+KRIKKLGE+NF+IVGDK+ TIQVTCK+KEQ++ L Sbjct: 2 CFNQRILIGSISTEQLNKTIVIIGWIKRIKKLGEINFIIVGDKSGTIQVTCKDKEQIQQL 61 Query: 68 TREDLVIVKGKLKRLDSVRFEITNPTITLFAKSKTPPLIIEDKTDALEEVXXXXXXXXXX 127 TRED+VIVK KL+RLDSVRFE+ NPTI LF+KSKTPPLIIED+TDALEEV Sbjct: 62 TREDIVIVKAKLQRLDSVRFELINPTIKLFSKSKTPPLIIEDETDALEEVRLKYRYLDLR 121 Query: 128 XPVMQKRLALRHKVTLAVRNWLDQMGFIEVETPTLTKSTPEGARDFLVPARIREHSFYAL 187 +MQKRL LRH+ LA+RNW +Q GFIE+ETPTL+KSTPEGA+DFLVPARIR+ FYAL Sbjct: 122 RRLMQKRLLLRHQFILAIRNWFNQQGFIEIETPTLSKSTPEGAQDFLVPARIRKDCFYAL 181 Query: 188 PQSPQIYKQLLMVGGTEKYFQIAHVYRDEDSRKDRQPEHTQIDLEVAFYTKEMVMDLIQR 247 QSPQIYKQLLM+ G EKYFQIA VYRDEDSRKDRQPEHTQID E++F ++M+M+L+++ Sbjct: 182 VQSPQIYKQLLMIAGVEKYFQIARVYRDEDSRKDRQPEHTQIDFEISFCNQKMIMNLVEK 241 Query: 248 LFVDVFRQVLNIKLKKPFPVLKFAEAFNRFGSDKPDLRYGFELEDCTDLFQDSPNQFTNL 307 LF VF V IK+KK FPV KF+E F RFGSDKPDLRYGFE++D T LFQD NQFT L Sbjct: 242 LFFSVFLDVFQIKIKKTFPVFKFSELFERFGSDKPDLRYGFEIKDFTSLFQDHQNQFTKL 301 Query: 308 INAGGIVGGIQLPNLYLDEVSFKALRKLAKDNGVSLEFYSDKASSLKQPLDLPLAGTILL 367 I A GI+GGI+L N+ L KALRK+AKD+ VSLE ++ S+LK + T+LL Sbjct: 302 IEAKGIIGGIELTNIELSTDKIKALRKIAKDHDVSLEVHNKNNSTLKTSIKCDEKNTLLL 361 Query: 368 VAHKSKTQAWTALGAIRNELKYHLNLVKPNQYSFCWIVDFPLYEFDEKEQKWVSAHNMFS 427 VA+KSK +AWTALGAIRNELKYHL++VKPNQYSFCW+VDFPLY+FDEK +W+S HN+FS Sbjct: 362 VANKSKKKAWTALGAIRNELKYHLDIVKPNQYSFCWVVDFPLYDFDEKTNQWISNHNIFS 421 Query: 428 NPQPQWLVNFENHKAEALSEQYDLVLNGFELGSGSIRIHDPEVQTRLMQSLGVDPQQFGF 487 P+ +W+ NFE++K EALSEQ+DLVLNGFE+GSGSIRI+DP VQ RLM SL +DP +F F Sbjct: 422 KPKQEWIDNFESNKNEALSEQFDLVLNGFEIGSGSIRINDPIVQKRLMNSLNIDPNKFAF 481 Query: 488 VMEAYQYGAPVHAGMGLGLDRLMMIINNVDNIREVMAFPKNAQGIEMHTNAPDQVDIKDI 547 ++EAYQYGAPVH GMGLG+DRLMMI+N DNIREV+AFPKN GIE+HTNAPD++D K+ Sbjct: 482 LLEAYQYGAPVHGGMGLGIDRLMMILNQTDNIREVIAFPKNNHGIEVHTNAPDKID-KEE 540 Query: 548 TTIWSKHPVK 557 W K VK Sbjct: 541 VKWWIKELVK 550 >ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycoplasma genitalium G-37] Length = 490 Score = 59.7 bits (143), Expect = 6e-011, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 33/291 (11%) Query: 19 TSEHLNK--TVTIAGWVKRIKKLGELNFVIVGDKTNTIQVTCKNKEQVK-------YLTR 69 + E L K TV++AG + I++ F+I+ D +Q+ K K ++ Sbjct: 49 SEEELKKKATVSLAGRIIAIRQ----TFLIIQDFDGQVQLYINKKIHPKLFDYFNEFVDI 104 Query: 70 EDLVIVKGKLKRLDSVRFEITNPTITLFAKSK-TPPLIIEDKTDALEEVXXXXXXXXXXX 128 D ++V GK + + + + AK PP TD +E Sbjct: 105 GDQIVVSGKPMLTKTKVLTLAVEEMKIIAKCLLVPPEKWHGLTD-IETRARKRFLDLTYN 163 Query: 129 PVMQKRLALRHKVTLAVRNWLDQMGFIEVETPTLTKST-PEGARDFLVPARIREHSFYAL 187 M+ R K+ ++R++LDQ GFIEVETPTL A+ F + FY L Sbjct: 164 LAMRDVFLKRTKIIKSIRSFLDQNGFIEVETPTLQAVLGGANAKPFKTHYNALKADFY-L 222 Query: 188 PQSPQIYKQLLMVGGTEKYFQIAHVYRDEDSRKDRQPEHTQIDLEVAFYTKEMVMDLIQR 247 + +I + L++GG K +++ ++R+E PE T I++ A+ E+++ L+++ Sbjct: 223 RIANEIALKKLIIGGFNKVYEMGKMFRNEGVDTTHNPEFTSIEIYQAYADFEVMLVLVEK 282 Query: 248 LFVDVFRQVLN----------IKLKKPFPVLKFAEAFNR-----FGSDKPD 283 L + + LN I LK PF + E + F S K D Sbjct: 283 L-IQSLCESLNQFSFNWNNKTINLKTPFHKITMVELIKKVTGIDFNSVKDD 332 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507786|ref|NP_109735.1| similar to nicotinate phosphoribosyl transferase [Mycoplasma pneumoniae M129] (451 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072697.1| hypothetical protein MG037 [Mycoplasma genitali... 634 0.0 >ref|NP_072697.1| hypothetical protein MG037 [Mycoplasma genitalium G-37] Length = 450 Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust. Identities = 300/450 (66%), Positives = 363/450 (80%), Gaps = 1/450 (0%) Query: 1 MVQTPSEINTHLKHLLACDAYKLSHRLMYPNDTTNLYSCLTARGGRGGFPNFVWNHEFAK 60 M + SEI HLK+LLACDAYKLSHRLMYP DT NLYS LTARG G F FVWNH+FAK Sbjct: 2 MDKRTSEIEFHLKNLLACDAYKLSHRLMYPQDTQNLYSMLTARGVYGDFKEFVWNHDFAK 61 Query: 61 KIILEVFGNFCDSVLAVQNDPGLAQALTDKVTTVFGDPQFGLEFTQHICYLANFLKQHHQ 120 +I+L VF F +SV+ V+ + LA ALTDK+ +VF D + EFTQHIC+LA+FL+++ + Sbjct: 62 EILLNVFNGFVNSVIEVKKNKLLAAALTDKLVSVFNDHELANEFTQHICHLASFLEKNKK 121 Query: 121 LPLTVKIHQSSEGLAFRTPLVTITGSDQMVPELVWLVNYFETVLLENIWLYQTTLTVAQS 180 +PL KIH+S + L FRTPL+TI G + + VWLVNYFETVLLENIWL+QT TVA+ Sbjct: 122 MPLVAKIHESDQSLPFRTPLITIEGVENIPNNFVWLVNYFETVLLENIWLFQTASTVAKR 181 Query: 181 LKLLLERYANETADNTEFTHFQCHDFSMRGMSSLQSALYVANAHLQYFSGSDTILGGVAA 240 +K LLE+YA ETAD T F +FQCHDFSMRGMSSLQSALYVA AHLQYF+GSDTILGG + Sbjct: 182 IKSLLEKYAKETADETSFINFQCHDFSMRGMSSLQSALYVARAHLQYFTGSDTILGGDNS 241 Query: 241 KSILASEHSVMCADGQEGELNTFKRLLEQFPNKNLSLVIDSYDMWHVLDNILPQLKDLVL 300 +SILASEHSVMCADG + EL TF+RLLE+F +K LSLVIDSYDMW+VLDNI+P+LK+L+L Sbjct: 242 RSILASEHSVMCADGSKHELKTFQRLLEKFKDKKLSLVIDSYDMWNVLDNIIPRLKNLIL 301 Query: 301 QRQEKLYLRPDSGNFETLICQGKRFNPEDKTTWGVIDYLDYHFGSTVNQKGYKVLNQKLG 360 R LYLR DSGN++TLIC + +DK+TW +IDYLD+HF ST+N+KGYKVLN+K+G Sbjct: 302 MRGATLYLRADSGNYQTLIC-NPNYKKQDKSTWAMIDYLDHHFSSTINKKGYKVLNKKIG 360 Query: 361 IVYGDGITYERIEYILEQLKQRGFCSSNIVFGVGSTTYQNLNRDTLGFVYKLTAIKKGNT 420 I+YGDGITY++IE+IL LK G+CSSNI+FGVGS+TYQNLNRDTLGFVYKLTAIK+ N Sbjct: 361 IIYGDGITYQKIEWILNCLKNHGYCSSNIIFGVGSSTYQNLNRDTLGFVYKLTAIKRNNR 420 Query: 421 WHDVTKSPITDPTKQSIGGRFDNPNLIQVY 450 W V K+PITD +K S GGR+ LI VY Sbjct: 421 WIGVKKTPITDLSKSSKGGRYKTKRLITVY 450 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507787|ref|NP_109736.1| membrane export protein family [Mycoplasma pneumoniae M129] (518 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 414 e-118 ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 407 e-115 ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 104 2e-024 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 414 bits (1065), Expect = e-118, Method: Compositional matrix adjust. Identities = 237/542 (43%), Positives = 331/542 (61%), Gaps = 40/542 (7%) Query: 1 MNELQTKVNEANNIFPVE-AF-KVPKVPEKLFGFVNQGFFPKLNPKGLNIADNVASLFEQ 58 MN+LQ +V AN IFPV+ AF K+PKVP +LF V+ FPKLNPKGLNI+DN+A+LFE+ Sbjct: 124 MNQLQKQVEAANAIFPVDDAFVKLPKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFER 183 Query: 59 YSLKQASLKDFDILLEKKNDIVLEHKVRYNFALQFHFETTYVGTGGE-INLQFALQASTT 117 Y+LK LK+FD+ +K D++++ KVRYNF +Q F+T YVG G INL F L+A T Sbjct: 184 YNLKSIELKNFDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTV 243 Query: 118 NFSSLEELQASFSKTGDNLTAQLFWKPTVTKLV-SGENDLTHIAQTAIGESLFDSRVDLS 176 NF++L++LQ +F K G++L+ QLFW PTV KL + NDLTHIA+T IGES F + V+L+ Sbjct: 244 NFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLA 303 Query: 177 ASIINSEATLKTAEATFTTQVLNPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---- 232 S+I + + F +VL PF Sbjct: 304 KSVIEYDKVQPLVKQAFEERVLTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAE 363 Query: 233 -----------XXXXXXDKEALQKSLWNFQEFISYWTGQGKDVKQKEQFIQALEAAFST- 280 ++EA +KS +F++F YW +GKDV +K I AL+ A +T Sbjct: 364 EKRKAEEAKRNQEKARREREAYEKSFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIATP 423 Query: 281 -NWNEVFNLLIAGFRSAIQTYYKDGKADQSQNAKIAFGEKGIQFPKSGPGLDGIFMSDFL 339 N F+LLI GF S ++ Y+ K D+ + K+AFGEKGIQFP++ G++G++MS+FL Sbjct: 424 AYRNRTFSLLIKGFASGVERYFNANKNDK-ELKKLAFGEKGIQFPRADAGVNGLYMSNFL 482 Query: 340 RGNLTGNAHFDLKLKKVEVKNTQGKDAQGNDKKASINWQAKQNNFPFRQVNPWDFSFEVE 399 R LT A F L LK ++V+NT +D Q + W K N +Q NP+ F+ ++ Sbjct: 483 RHELTSKAKFSLNLKDIKVENTV-EDTQ-------LYW--KDNGIHLKQANPYKFNLNIK 532 Query: 400 LKYEGSYGLYPGARFLNLFGS--LGIPNDWKGEMSVKFVLDGKTPQWIADKPDYPGSLFK 457 +KY G Y ++ + N + LGIP DW GEM++ FV++G + I DK DYPG+ F+ Sbjct: 533 IKYNGWYNVH----WWNWLPAKILGIPTDWSGEMNLTFVVNGDLSE-IVDKHDYPGTFFQ 587 Query: 458 F-EKNQLKFTPHVKEHVHVENKQFMEKLKSQNLHNLELATGATKPPVVDLASYLHYLILN 516 F +KN+L FT V+E + V+N FM LKSQNLHNL+LA+GATKPPVVDLASY H+++L Sbjct: 588 FTDKNELLFTLAVREQIKVDNNHFMGLLKSQNLHNLQLASGATKPPVVDLASYFHFVLLT 647 Query: 517 HK 518 K Sbjct: 648 EK 649 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 407 bits (1045), Expect = e-115, Method: Compositional matrix adjust. Identities = 219/500 (43%), Positives = 303/500 (60%), Gaps = 21/500 (4%) Query: 22 VPKVPEKLFGFVNQGFFPKLNPKGLNIADNVASLFEQYSLKQASLKDFDILLEKKNDIVL 81 +PKVP+ F F+N+ FFP+L+PKGLNI +++ +F QY+LK+ LKDF++ L KKNDIV+ Sbjct: 1 MPKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVI 60 Query: 82 EHKVRYNFALQFHFETTYVGTGGEINLQFALQASTTNFSSLEELQASFSKTGDNLTAQLF 141 + K+RY+F ++ FE Y G +NLQF L+A T+NF +L+ELQ SF+ G++L QLF Sbjct: 61 KDKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLF 118 Query: 142 WKPTVTKLVS-GENDLTHIAQTAIGESLFDSRVDLSASIINSEATLKTAEATFTTQVLNP 200 WKP + KLV +NDLT IA+TA+ +SLF S ++ S++ + L A+ F +++ P Sbjct: 119 WKPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEP 178 Query: 201 FXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXDKEALQKSLWNFQEFISY 256 F +E KS N +EF Y Sbjct: 179 FKKEREKAKADYEEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKDY 238 Query: 257 WTGQGKDVKQKEQFIQALEAAFSTNWNEVFNLLIAGFRSAIQTYYKDGKADQSQNAKIAF 316 W Q KDV K Q I AL+ +F+ + N+ F+LLI F A YYK+ K D+S+NAK AF Sbjct: 239 WKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKAF 298 Query: 317 GEKGIQFPKSGPGLDGIFMSDFLRGNLTGNAHFDLKLKKVEVKNTQGKDAQGNDKKASIN 376 EKGIQFP+ G L+G++MSD+LRG LT L L ++++N + +I+ Sbjct: 299 SEKGIQFPRQG--LEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENN--------PTID 348 Query: 377 WQAKQNNFPFRQVNPWDFSFEVELKYEGSYGLYPGARFLNLFGSLGIPNDWKGEMSVKFV 436 W K N FRQ P+ F FE+++KY+G Y L + F GIP+ W GEM VKF+ Sbjct: 349 W--KNNGIEFRQHYPYKFKFEIDIKYQGGYKLTGLFSWFAPFS--GIPSSWNGEMDVKFI 404 Query: 437 LDGKTPQWIADKPDYPGSLFKFEKNQLKFTPHVKEHVHVENKQFMEKLKSQNLHNLELAT 496 +DG + DYPGSLF+F+ NQL FT HVKE + V++ +FM+ LK QNLHNL+L Sbjct: 405 VDGDLDYNLVQNTDYPGSLFQFKDNQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRN 464 Query: 497 GATKPPVVDLASYLHYLILN 516 GATKPPVVDLASYLHYL+LN Sbjct: 465 GATKPPVVDLASYLHYLVLN 484 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 104 bits (260), Expect = 2e-024, Method: Compositional matrix adjust. Identities = 141/567 (24%), Positives = 221/567 (38%), Gaps = 75/567 (13%) Query: 5 QTKVNEANNIFPVEAFKVPK-----VPEKLFGFVNQGFFPKLNPKGLNIADNVASLFEQY 59 Q K+ +A+ IFP PK V + L + GFFP L G N+ + V F + Sbjct: 118 QQKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDF 177 Query: 60 SLKQASLKDFDILLEKKNDIVLEHKVRYNFALQFHFETTYVGTGGEINLQFALQASTTNF 119 + +K+F++ L +NDI+ KVRY F ++F+ ++ F T NF Sbjct: 178 RINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNF 237 Query: 120 SSLEELQASFSKTGDNLTAQLFWKPTVTKLVSGENDLTHIAQTAIGESLFDSRVDLSASI 179 S +E F++ L + + K V KL +D T+IA + + +DL+ SI Sbjct: 238 SDIENFNEIFNRKP-ALQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDLNKSI 296 Query: 180 INSEATLKTAEATFTTQVLNPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 239 + L+ A+ F + + P + Sbjct: 297 YALD--LENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKE 354 Query: 240 --------KEA---LQKSLWNFQEFISYW-TGQGK----------DVKQKEQFIQALEAA 277 KEA LQK+L N F +++ +GQ + +V+ +E +AL+ + Sbjct: 355 KAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQIS 414 Query: 278 FST--NWNEVFNLL------IAGFRSAIQTYYKDGKADQSQNAKIAFG-------EKGIQ 322 +S W +LL + + I +D KA Q AFG ++ + Sbjct: 415 YSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQ-----YAFGLGPNTSEQQLGR 469 Query: 323 FPKSGPGLDGIFMSDFLRGNLTGNAHFDLKLKKVEVKNTQGKDAQGNDKKASINWQAKQN 382 G G +GI MSD+LR L F L K N G NDKK W + Sbjct: 470 VTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIG---DANDKKHI--WISPHT 524 Query: 383 NFPFRQV--------NPWDFSFEVELKYEGSYGLYPGARFLNLFGSLGIPNDWKGEMSVK 434 R+ + F + + EG + A + + IP W G++ V Sbjct: 525 FKLNREYGDGERFKGKAYRFKLSISFELEG----HLTAHWWTIAFRGSIPGSWSGKLRVT 580 Query: 435 FVLDGKTPQWI--ADKPDYPGSLFKFEKNQLKFTPHVKEHV-HVENKQFMEKLKSQNLHN 491 DG P + P Y + + +L F PH + V V N+ L+SQNLHN Sbjct: 581 HEFDGDVPYYRLHTTPPQYRLT----DDMKLLFVPHSIQRVTAVGNESINGLLRSQNLHN 636 Query: 492 LELATGATKPPVVDLASYLHYLILNHK 518 LE + P +DL SY+ Y I + K Sbjct: 637 LERQSYEATAP-IDLISYMLYAISDKK 662 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507788|ref|NP_109737.1| membrane export protein family [Mycoplasma pneumoniae M129] (632 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 456 e-130 ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 422 e-120 ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 134 4e-033 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 456 bits (1172), Expect = e-130, Method: Compositional matrix adjust. Identities = 262/634 (41%), Positives = 372/634 (58%), Gaps = 33/634 (5%) Query: 22 FIIPTLSQHGSSTDPSFVALRNNSSLSCDGKSRLLEFGNDLGFSKEETDVLAKQKNWEQN 81 F +P + +GS TD + L + +S G S+ G D FS + L K+ +++QN Sbjct: 27 FALPIFANNGSKTD---LGLLSKNSADFLGSSKRSLAGFDTPFSPDNLQYLEKETDYDQN 83 Query: 82 YTNFKKQFEHKLLDPKSFSLTDVYNLFSGFQQSVADTVKLMNELQTQVNKANDIYPVES- 140 + +F ++F+ + + + D+YNLFSGF +SV TV LMN+LQ QV AN I+PV+ Sbjct: 84 FKSFTEKFKDEKITNNQLGIVDIYNLFSGFHKSVKSTVDLMNQLQKQVEAANAIFPVDDA 143 Query: 141 -FQVPKVPQKLFGFVDQGFFPKLNPKGLNIADNVASLFEKYSLKQATLKDFDIVLEKKND 199 ++PKVP +LF VD FPKLNPKGLNI+DN+A+LFE+Y+LK LK+FD+ +K D Sbjct: 144 FVKLPKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFERYNLKSIELKNFDLAFLRKAD 203 Query: 200 IVLEHKVRYNFALQFHFETTYIGSGGE-INLQFALQASTTNFSSLEELQASFSKVGNNLT 258 ++++ KVRYNF +Q F+T Y+G G INL F L+A T NF++L++LQ +F KVGN+L+ Sbjct: 204 VIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLS 263 Query: 259 AQLFWKPVVNKLT-SGENDLTHIAQTAVGESLFDSRVDLTSSIINNEAAIKTTQQQFETE 317 QLFW P VNKLT + NDLTHIA+T +GES F + V+L S+I + +Q FE Sbjct: 264 TQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQAFEER 323 Query: 318 VLALFKAEREKALAEYKAEQERIAXXXXXXXXXXXX---------------XXXXXXXXX 362 VL FK ERE A Y+ EQ R+ Sbjct: 324 VLTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAEEKRKAEEAKRNQEKARRERE 383 Query: 363 XXVESLYNVANFVSYWEKRGKDVTDKKQLIQALKSAFATNW--NEVFQLLTAGMREGIKE 420 +S + +F YW +GKDVT K LI ALK+A AT N F LL G G++ Sbjct: 384 AYEKSFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGVER 443 Query: 421 YYKHNKPDQSANAKKAFGQNGLAFPRT--GFDGIYMSDWLRGELRNKGNINLHLKQNETT 478 Y+ NK D+ K AFG+ G+ FPR G +G+YMS++LR EL +K +L+LK + Sbjct: 444 YFNANKNDKEL-KKLAFGEKGIQFPRADAGVNGLYMSNFLRHELTSKAKFSLNLK--DIK 500 Query: 479 VKKIRDDISIEWNESKGGIEFHQTYPYWFEFEVNFKYIGGYSLNWWDAIWAKVAGIPGSW 538 V+ +D + W ++ GI Q PY F + KY G Y+++WW+ + AK+ GIP W Sbjct: 501 VENTVEDTQLYWKDN--GIHLKQANPYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDW 558 Query: 539 KGEMNLKLVIDGEIHKWMVTKPDYPRTFFQFDDQFDKLWFTLHVSQEISVRDESFMNXXX 598 GEMNL V++G++ + +V K DYP TFFQF D+ ++L FTL V ++I V + FM Sbjct: 559 SGEMNLTFVVNGDLSE-IVDKHDYPGTFFQFTDK-NELLFTLAVREQIKVDNNHFMGLLK 616 Query: 599 XXXXXXXXXRTGSTKPPVVDLASYLHYLILADKS 632 +G+TKPPVVDLASY H+++L +KS Sbjct: 617 SQNLHNLQLASGATKPPVVDLASYFHFVLLTEKS 650 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 422 bits (1085), Expect = e-120, Method: Compositional matrix adjust. Identities = 218/491 (44%), Positives = 312/491 (63%), Gaps = 13/491 (2%) Query: 143 VPKVPQKLFGFVDQGFFPKLNPKGLNIADNVASLFEKYSLKQATLKDFDIVLEKKNDIVL 202 +PKVPQ F F+++ FFP+L+PKGLNI +++ +F +Y+LK+ LKDF++ L KKNDIV+ Sbjct: 1 MPKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVI 60 Query: 203 EHKVRYNFALQFHFETTYIGSGGEINLQFALQASTTNFSSLEELQASFSKVGNNLTAQLF 262 + K+RY+F ++ FE Y G +NLQF L+A T+NF +L+ELQ SF+ GN+L QLF Sbjct: 61 KDKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLF 118 Query: 263 WKPVVNKLTS-GENDLTHIAQTAVGESLFDSRVDLTSSIINNEAAIKTTQQQFETEVLAL 321 WKP++NKL +NDLT IA+TAV +SLF S ++ +S++ + + + +FE E++ Sbjct: 119 WKPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEP 178 Query: 322 FKAEREKALAEYKAEQERIAXXXXXXXXXXXXXXXXXXXXXXXVE----SLYNVANFVSY 377 FK EREKA A+Y+ +Q +A E S N F Y Sbjct: 179 FKKEREKAKADYEEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKDY 238 Query: 378 WEKRGKDVTDKKQLIQALKSAFATNWNEVFQLLTAGMREGIKEYYKHNKPDQSANAKKAF 437 W+ + KDVTDK QLI ALK++FA + N+ F LL + +YYK+NK D+S NAKKAF Sbjct: 239 WKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKAF 298 Query: 438 GQNGLAFPRTGFDGIYMSDWLRGELRNKGNINLHLKQNETTVKKIRDDISIEWNESKGGI 497 + G+ FPR G +G+YMSDWLRG+L + +I L+L ++ ++ +I+W GI Sbjct: 299 SEKGIQFPRQGLEGLYMSDWLRGKLTSYTDIKLNL--TSIKIENKENNPTIDW--KNNGI 354 Query: 498 EFHQTYPYWFEFEVNFKYIGGYSLNWWDAIWAKVAGIPGSWKGEMNLKLVIDGEIHKWMV 557 EF Q YPY F+FE++ KY GGY L + +A +GIP SW GEM++K ++DG++ +V Sbjct: 355 EFRQHYPYKFKFEIDIKYQGGYKLTGLFSWFAPFSGIPSSWNGEMDVKFIVDGDLDYNLV 414 Query: 558 TKPDYPRTFFQFDDQFDKLWFTLHVSQEISVRDESFMNXXXXXXXXXXXXRTGSTKPPVV 617 DYP + FQF D ++L FTLHV ++I V+D FM+ R G+TKPPVV Sbjct: 415 QNTDYPGSLFQFKD--NQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNGATKPPVV 472 Query: 618 DLASYLHYLIL 628 DLASYLHYL+L Sbjct: 473 DLASYLHYLVL 483 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 134 bits (336), Expect = 4e-033, Method: Compositional matrix adjust. Identities = 156/656 (23%), Positives = 271/656 (41%), Gaps = 69/656 (10%) Query: 25 PTLSQHGSSTDPSFVALRNNSSLSCDGKSRLLEFGNDLGFSKEETDVLAKQKNWEQNYTN 84 P L ++TD S ++S++ + +++ L D ++ + D + ++E+ + N Sbjct: 19 PLLGIVVTNTDQSIKFTSKSNSINKNNQNKELALLRDNLMNEAKVD---EPLSFEKRFEN 75 Query: 85 FKKQFEH-KLLDPKSFSLTDVYNLFSGFQQSVADTVKLMNELQTQVNKANDIYPVESFQV 143 FK ++ L+ FSL DVY+L GF+QS+ + Q ++ A+ I+P Sbjct: 76 FKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVIAQQQKIKDADKIFPSTKDNP 135 Query: 144 PK-----VPQKLFGFVDQGFFPKLNPKGLNIADNVASLFEKYSLKQATLKDFDIVLEKKN 198 PK V L + GFFP L G N+ + V F + + +K+F++ L +N Sbjct: 136 PKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDFRINDYKIKNFNVDLVSEN 195 Query: 199 DIVLEHKVRYNFALQFHFETTYIGSGGEINLQFALQASTTNFSSLEELQASFSKVGNNLT 258 DI+ KVRY F ++F+ + ++ F T NFS +E F++ L Sbjct: 196 DIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNFSDIENFNEIFNR-KPALQ 254 Query: 259 AQLFWKPVVNKLTSGENDLTHIAQTAVGESLFDSRVDLTSSIINNEAAIKTTQQQFETE- 317 + + K V+KL+ +D T+IA + + +DL SI ++ +++F+ E Sbjct: 255 FRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDLNKSIY--ALDLENAKERFDKEF 312 Query: 318 VLALFKAEREKALAEYKAEQERIAXXX-----------XXXXXXXXXXXXXXXXXXXXVE 366 V L++ RE LA ++ EQ RIA + Sbjct: 313 VQPLYQKRREAKLA-WEEEQRRIAEEQRRQEEERARILKELKEKAEKDKRVKEAQNNLQK 371 Query: 367 SLYNVANFVSYWEKRGKD------------VTDKKQLIQALKSAFATNWNEVFQLLTAGM 414 +L N+ F +++ G+D V ++ L +AL+ +++ F + G Sbjct: 372 ALGNLDTFFNFFSS-GQDRVLLGFDPNKYNVQTREGLFKALQISYSNFKTWTFYISLLGW 430 Query: 415 REGI-----KEYYKHNKPDQSANAKKAFGQNG-------LAFPRTGFDGIYMSDWLRGEL 462 +EG K + + D++ G N + P G++GI MSDWLR L Sbjct: 431 KEGSVKLLKKPIWNALRDDKAFQYAFGLGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWAL 490 Query: 463 RNKGNINLHLKQN-ETTVKKIRDDISIEW--------NESKGGIEFHQTYPYWFEFEVNF 513 + L +N E + +D W N G E + Y F+ ++F Sbjct: 491 GYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNREYGDGERFKGKAYRFKLSISF 550 Query: 514 KYIGGYSLNWWDAIWAKVAGIPGSWKGEMNLKLVIDGEI--HKWMVTKPDYPRTFFQFDD 571 + G + +WW + IPGSW G++ + DG++ ++ T P Y T DD Sbjct: 551 ELEGHLTAHWWTIAFR--GSIPGSWSGKLRVTHEFDGDVPYYRLHTTPPQYRLT----DD 604 Query: 572 QFDKLWFTLHVSQEISVRDESFMNXXXXXXXXXXXXRTGSTKPPVVDLASYLHYLI 627 KL F H Q ++ +N R +DL SY+ Y I Sbjct: 605 M--KLLFVPHSIQRVTAVGNESINGLLRSQNLHNLERQSYEATAPIDLISYMLYAI 658 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507789|ref|NP_109738.1| glycerol kinase [Mycoplasma pneumoniae M129] (508 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072698.1| glycerol kinase (glpK) [Mycoplasma genitalium G... 797 0.0 >ref|NP_072698.1| glycerol kinase (glpK) [Mycoplasma genitalium G-37] Length = 508 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/508 (74%), Positives = 437/508 (86%) Query: 1 MDLKQQYILALDEGTSSCRTIVFDKDLNQVAIAQNEFNQFFPKSGWVEQDPLEIWSVQLA 60 MDLK+QYI+ALDEGTSSCR+IVFD +LNQ+AIAQNEFN FFP SGWVEQDPLEIWS QLA Sbjct: 1 MDLKKQYIIALDEGTSSCRSIVFDHNLNQIAIAQNEFNTFFPNSGWVEQDPLEIWSAQLA 60 Query: 61 TMQSAKNKAQIKSNNIAAVGITNQRETIVLWNKENGLPVYNAIVWQDQRTASLCDKLNQD 120 TMQSAKNKAQIKS+ + AVGITNQRETIVLWNKENGLPVYNAIVWQDQRTA+LC K N+D Sbjct: 61 TMQSAKNKAQIKSHEVIAVGITNQRETIVLWNKENGLPVYNAIVWQDQRTAALCQKFNED 120 Query: 121 TKIKEFVKKHTGLPINPYFSATKIAWILENVPLAQKMLKEDKLLAGTIDTWLIWKLTGGK 180 I+ VK+ TGLPINPYFSATKIAWIL+NVPLA+K++++ KLL GTID+WLIWKLT GK Sbjct: 121 KLIQTKVKQKTGLPINPYFSATKIAWILKNVPLAKKLMEQKKLLFGTIDSWLIWKLTNGK 180 Query: 181 MHVTDVSNASRTLLFDITTMTWSQELGDIFKVPLSILPKVMPSNAHFGDIVPSHWSTSAT 240 MHVTDVSNASRTLLFDI M WS+EL D+F+VP+SILPKV+ SNA+FGDI +HWS++A Sbjct: 181 MHVTDVSNASRTLLFDIVKMEWSKELCDLFEVPVSILPKVLSSNAYFGDIETNHWSSNAK 240 Query: 241 GMVPIRGVAGDQQAALFGQLCVEPAMVKNTYGTGCFMLMNIGNELKYSQHNLLTTVAWQL 300 G+VPIR V GDQQAALFGQLC EP MVKNTYGTGCF+LMNIG++ S+HNLLTTVAWQL Sbjct: 241 GIVPIRAVLGDQQAALFGQLCTEPGMVKNTYGTGCFVLMNIGDKPTLSKHNLLTTVAWQL 300 Query: 301 ENQKPVYALEGSVFVAGAALKWLRDSLKVMYSAAESDFYAKLAQKEEQEVVFVPAFTGLG 360 EN PVYALEGSVFVAGAA+KWLRD+LK++YS ESDFYA+LA++ EQ +VFVPAF+GLG Sbjct: 301 ENHPPVYALEGSVFVAGAAIKWLRDALKIIYSEKESDFYAELAKENEQNLVFVPAFSGLG 360 Query: 361 APYWDASARGAIFGIEANTKREHLVKATLEAIAFQANDLIKAMASDLNSSIKKIKADGGA 420 AP+WDASARG I GIEA+TKREH+VKA+LE+IAFQ NDL+ AMASDL I IKADGG Sbjct: 361 APWWDASARGIILGIEASTKREHIVKASLESIAFQTNDLLNAMASDLGYKITSIKADGGI 420 Query: 421 CNSNYLMQFQADIANLEVIIPKNVETTTMGAAFLAGLAVNYWKDTKQLEKLTGIAKQFKS 480 SNYLMQFQADIA++ V IPKN ETT +G FLAGLA +WKD QLEKLT + K+FKS Sbjct: 421 VKSNYLMQFQADIADVIVSIPKNKETTAVGVCFLAGLACGFWKDIHQLEKLTTLDKKFKS 480 Query: 481 QMNQTVREKKSKRWNEAVKRTLKWASLD 508 M+ +R+ K W++AV+R LKW +D Sbjct: 481 TMDPNIRKTKINSWHKAVERALKWKEID 508 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507790|ref|NP_109739.1| glycerol-3-phospate dehydrogenase [Mycoplasma pneumoniae M129] (384 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072699.1| hypothetical protein MG039 [Mycoplasma genitali... 493 e-141 >ref|NP_072699.1| hypothetical protein MG039 [Mycoplasma genitalium G-37] Length = 384 Score = 493 bits (1270), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/384 (62%), Positives = 304/384 (79%) Query: 1 METRDVLIVGGGVIGCATAYELSQYKLKVTLVEKHHYLAQETSHANSGVIHTGIDPNPHK 60 M+T DVLIVGGGVIG + AYELSQYKLKV L+EK+ +L ETS ANSGVIH+GIDPNP+K Sbjct: 1 MQTIDVLIVGGGVIGTSCAYELSQYKLKVALLEKNAFLGCETSQANSGVIHSGIDPNPNK 60 Query: 61 LTAKYNILGKKLWLNTYFKRLGFPRQKIRTLIVAFNEMEREQLEVLKQRGIANQINLEDI 120 LTAKYNILG+K+W+ +FK+L FPR+KI TLIVAFN E+ QL +LK+RGI N I +E+I Sbjct: 61 LTAKYNILGRKIWIEDWFKKLIFPRKKIATLIVAFNNEEKLQLNLLKERGIKNSIPVENI 120 Query: 121 QMLSKEETLKLEPYVNPEIVAGLKIEGSWAIDPVLASKCLALAAQQNKVQICTNTEVTNI 180 Q+L +++TL EP++NP +VA LK+EGSW IDP++A+KCLALA+ QN V I +N +VT I Sbjct: 121 QILDQQQTLLQEPFINPNVVASLKVEGSWLIDPLIATKCLALASLQNNVAIYSNKKVTKI 180 Query: 181 SKQVDGTYLVWTNNETTPSFKVKKIIDAAGHYADYLAHLAKADDFEQTTRRGQYVVVTNQ 240 D +LV+ NNETTP FK KK+IDAAGHYAD+LA + D+F+QTTR+GQY+V+ NQ Sbjct: 181 EIDSDDDFLVFINNETTPQFKTKKLIDAAGHYADWLAETTQVDNFKQTTRKGQYLVLKNQ 240 Query: 241 GELHLNSMVFMVPTIHGKGVIVSPMLDGNFLVGPTALDGVDKEATRYITKDAPCMLTKIG 300 L +N+++FMVPTIHGKGV+V+ MLDGN LVGP A++G++K TR I D+ + IG Sbjct: 241 NNLKINTIIFMVPTIHGKGVVVAEMLDGNILVGPNAVEGIEKNKTRSIDLDSINQIKTIG 300 Query: 301 KHMVPSLNINNALISFAGSRPIDKATNDFIIRVAHNDPDFVILGGMKSPGLTAAPAIVRE 360 K MVPSL N++ SFAGSR ID TNDF+IR A ++P+F+ILGGMKSPGLT++PAI + Sbjct: 301 KKMVPSLQFENSIYSFAGSRAIDIETNDFVIRTAKSNPNFIILGGMKSPGLTSSPAIAKR 360 Query: 361 AVRLLNWKLTKKPNWNGKYNLPWI 384 AV LLN KL KK NWN YNL WI Sbjct: 361 AVELLNLKLKKKINWNPNYNLSWI 384 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507791|ref|NP_109740.1| putative lipoprotein, MG040 homolog, from M. genitalium [Mycoplasma pneumoniae M129] (657 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072700.1| lipoprotein, putative [Mycoplasma genitalium G-37] 657 0.0 >ref|NP_072700.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 591 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/508 (66%), Positives = 404/508 (79%), Gaps = 16/508 (3%) Query: 1 MFGKGLVKKSLLFFSGVSTMAVFLVSCGATRIWESSIQLLVSNDEATLADKSFSEMSYEG 60 +FGK + KKSL SG+S++AVFL +CGAT+I++SS+QLLVS++ +TLADKSFS+MSYEG Sbjct: 5 LFGKLVFKKSLFLLSGMSSLAVFLTACGATKIFDSSVQLLVSDNFSTLADKSFSQMSYEG 64 Query: 61 IRRYFRSQKHIELPSPNSSLLQDGNGLWKRPGRTLSDRIATFKNIKNDGSDVIVATGFNQ 120 IR +F+ K ++LP +SS LQ+GNGLWKRPG TLSDRIATF NIKNDGSDVIVATGFNQ Sbjct: 65 IRSFFKKSKGVDLPEADSSQLQEGNGLWKRPGFTLSDRIATFNNIKNDGSDVIVATGFNQ 124 Query: 121 QEALQAISSDDRRYLADKNDLAKVGFIFVDGQIEKEYNVINKTPQFRSTPLNISSVAFRS 180 QE+LQAI+SDD R+ +DK LAK GFIFVDG IEKE+N N PQF+STP NISSVAFRS Sbjct: 125 QESLQAITSDDIRFQSDKESLAKTGFIFVDGAIEKEFNKRNGVPQFKSTPTNISSVAFRS 184 Query: 181 DDGSFLTGVATAVYLNLNQDYFLKKNGATNNSS--QDLTVSGFVGVPIPSTLSFLNGFRL 238 DDGSFLTGVATAVYLNLNQ+YFL K+G + NSS +LTVSGFVG+ +PSTLSFLNGFRL Sbjct: 185 DDGSFLTGVATAVYLNLNQEYFLDKSGWSTNSSNNNELTVSGFVGIALPSTLSFLNGFRL 244 Query: 239 GIAYFNEVIYTHLSDAETTXXXXXXXXXXXXXVLVQLKQMQGNDXXXXXXXWISPKQGSD 298 GIAYFNEVIY HLSDA+ + VL QL Q+ + WISPKQGSD Sbjct: 245 GIAYFNEVIYKHLSDAQDS---SAQVTTSKQTVLKQL-QVANGEKRIKKIKWISPKQGSD 300 Query: 299 NNSNLSIDDHKSGSFSSTEPRATTIINNLLDKGVSAIIPVAGPQVNLAVNEVARRKAHTA 358 + ++I DH+SGSFS TEPRA TI NNL+DKGV+AIIP+AGPQ NL V ++ARR+AHTA Sbjct: 301 GET-INIQDHQSGSFSDTEPRAITIANNLIDKGVNAIIPIAGPQTNLVVTQIARRQAHTA 359 Query: 359 IIGVDSAQELLDINQDAPDKDQLIKGNKKIIPFSSIKALDVAIENMLIAIQKGSDNNGYK 418 +IGVDSAQELLDIN DAP+KD+L GNKKIIPFSSIKALDVA+E++L ++KGS NGY+ Sbjct: 360 VIGVDSAQELLDINIDAPNKDKLKMGNKKIIPFSSIKALDVAVESILSTLEKGSSQNGYQ 419 Query: 419 GFGYNNIGTVGTSSVGISEAGYEFLIDPVFWKTTQS-QGKSMATNMTNLKRLSSDDTNTK 477 GFGYNNIGTV +SVG+SEAGYEFLIDPVFWK T S Q S++ +LK ++ ++ K Sbjct: 420 GFGYNNIGTVKNNSVGVSEAGYEFLIDPVFWKNTSSMQAMSLS---ASLKANAASSSDNK 476 Query: 478 KALKEVSTHK--NGSDKDG---IIGKYS 500 K L EV+T K NGS K+G II KY+ Sbjct: 477 KKLSEVATKKNENGSTKNGSNDIIDKYA 504 Score = 80.9 bits (198), Expect = 4e-017, Method: Compositional matrix adjust. Identities = 48/97 (49%), Positives = 64/97 (65%), Gaps = 2/97 (2%) Query: 562 TNDIISKYSKLLTMTTMNNKVMSSKKQSSDDNSFKKTSENGDWVIKGDELTKKKSTELPA 621 +NDII KY+KLLT ++ + + + S+ N FK T +GDW I GDEL K KS+ELP Sbjct: 496 SNDIIDKYAKLLTKSSSSTSMRNGSSDSNQQN-FKTTDNDGDWTIVGDELGKYKSSELPI 554 Query: 622 FAKGADYPTFPTEAVSVIN-GSTALDGKGFKWSFKQI 657 F + YPTF TEA +V++ G+ +GFKWSFKQI Sbjct: 555 FTGSSSYPTFQTEAQNVLDGGANVASTQGFKWSFKQI 591 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507792|ref|NP_109741.1| phosphocarrier protein HPr [Mycoplasma pneumoniae M129] (88 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072701.1| phosphocarrier protein HPr (ptsH) [Mycoplasma g... 145 7e-038 >ref|NP_072701.1| phosphocarrier protein HPr (ptsH) [Mycoplasma genitalium G-37] Length = 88 Score = 145 bits (366), Expect = 7e-038, Method: Compositional matrix adjust. Identities = 72/88 (81%), Positives = 81/88 (92%) Query: 1 MKKIQVVVKDPVGIHARPASIIAGEANKFKSELKLVSPSGVEGNIKSIINLMSLGIKQND 60 MKK Q V+KDPVGIHARPASI+A EA+KFKSELKLV+PSGVEGNIKSIINLMSLGI+ ND Sbjct: 1 MKKFQAVIKDPVGIHARPASILASEASKFKSELKLVAPSGVEGNIKSIINLMSLGIRHND 60 Query: 61 HITIKAEGTDEEEALNAIKAVLEKHQVI 88 +ITIKA+G DEEEAL AIKA LEK++VI Sbjct: 61 NITIKADGADEEEALAAIKACLEKNKVI 88 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507793|ref|NP_109742.1| hypothetical protein MPN054 [Mycoplasma pneumoniae M129] (123 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507794|ref|NP_109743.1| spermidine/putrescine transport ATP-binding prot [Mycoplasma pneumoniae M129] (560 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 785 0.0 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 113 5e-027 ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding prote... 87 6e-019 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 82 2e-017 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 77 6e-016 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 75 2e-015 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 75 2e-015 ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding prote... 72 2e-014 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 67 3e-013 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 62 1e-011 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/560 (70%), Positives = 445/560 (79%), Gaps = 1/560 (0%) Query: 1 MNERFLIEIEGLNKTFDDGFVSVRDINLKIKKGEFITILGPSGCGKTTTLRLLAGFEDPT 60 MNE LIEIEGLNKTFDDG+VS+RDI+L IKKGEFITILGPSGCGKTT LRLLAGFEDPT Sbjct: 1 MNEHSLIEIEGLNKTFDDGYVSIRDISLNIKKGEFITILGPSGCGKTTLLRLLAGFEDPT 60 Query: 61 YGKIKVNGLDIKDLPIHKRPFATVFQDYALFSHLTVYKNIAYGLKAMYTKLDPIDKLVEQ 120 YGKIKVNG+DIKD+ IHKRPFATVFQDYALFSHLTVYKNIAYGLK M+TKLD I KLV Sbjct: 61 YGKIKVNGIDIKDMAIHKRPFATVFQDYALFSHLTVYKNIAYGLKVMWTKLDEIPKLVSD 120 Query: 121 YHQSLLDKQHRLHKRIERLEKSNANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXNARRDA 180 Y + L K +L ++IE+L+K+N+N RR+ Sbjct: 121 YQKQLALKHLKLERKIEQLQKNNSNAQRIKKLKEKLQKLLEINKQKVIEFENKEKLRRED 180 Query: 181 IQQRLVQLTKEWXXXXXXXXXXXXXXXXXXXXXFEQTERKYQKDAWMATHSEMRLKQFKQ 240 I + L QLTKEW FE+ E KY+KD W HSE+RLKQ+++ Sbjct: 181 IYKNLEQLTKEWDLLSQKKLKEVEQQKQAIDKSFEKVENKYKKDPWFFQHSEIRLKQYQK 240 Query: 241 EVLALKQLIKTKFKQNEPVDXXXXXXXXXXXXYAAKRQIDKEYDKLVLAYNKKDYWTSYW 300 + LK IK K E + YA K+ IDKEYDKLV+AYNKKDYWTSYW Sbjct: 241 KKTELKADIKAT-KNKEQIQKLTKELQTLKQKYANKKAIDKEYDKLVVAYNKKDYWTSYW 299 Query: 301 ETYSLQQQEAFEKRYLSRKLTKQEQHQKVCAVIELVGLKGNEDKLPEELSGGMKQRVALA 360 ETY+LQQ+EAFEKRYLSRKLTK EQ++KV VIE+VGLKG ED+LP+ELSGGMKQRVALA Sbjct: 300 ETYTLQQKEAFEKRYLSRKLTKAEQNKKVSDVIEMVGLKGKEDRLPDELSGGMKQRVALA 359 Query: 361 RSLVIEPDILLLDEPLSALDAKVRKNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIV 420 RSLV+EP+ILLLDEPLSALDAKVRKNLQKELQ+IH++SGLTFILVTHDQEEALVLS+RIV Sbjct: 360 RSLVVEPEILLLDEPLSALDAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIV 419 Query: 421 VMNEGNILQVGSPADIYDSPKTEWIANFIGQANIFKGTYLGDLKIKLHSGEVIKTDVDNN 480 VMNEGNILQVG+P DIYDSPKTEWIANFIGQANIFKGTYLG+ KI+L SGE+I+TDVDNN Sbjct: 420 VMNEGNILQVGNPVDIYDSPKTEWIANFIGQANIFKGTYLGEKKIQLQSGEIIQTDVDNN 479 Query: 481 YVVGKEYKILIRPEDFDIVPKNKGFFNVRVIDKTYKGLLWKITTKLVDDTIVDLESVNDI 540 YVVGK+YKILIRPEDFD+VP+NKGFFNVRVIDK YKGLLWKITT+L D+TIVDLESVN++ Sbjct: 480 YVVGKQYKILIRPEDFDLVPENKGFFNVRVIDKNYKGLLWKITTQLKDNTIVDLESVNEV 539 Query: 541 EVDKTFGVTFDPIDVHLMEV 560 +V+KTFGV FDPIDVHLMEV Sbjct: 540 DVNKTFGVLFDPIDVHLMEV 559 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 113 bits (282), Expect = 5e-027, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 14/223 (6%) Query: 344 KLPEELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVRKNLQKELQKIHQQSGLTFI 403 K P+++SGG +QRVA+AR++V P +LL+DEPLS LDAK+R ++ +++ Q+ +T + Sbjct: 363 KRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQITTV 422 Query: 404 LVTHDQEEALVLSNRIVVMNEGNILQVGSPADIYDSPKTEWIANFIG--QANIFKGTYLG 461 VTHDQEEA+ +S+ IV M+ G + Q+G+P+++Y P E++A F+G + NI + + Sbjct: 423 FVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPANEFVARFLGTPEMNIIECSVKN 482 Query: 462 DLKI---KLHSGEVIKTDVDNNYVVGKEYKILIRPEDFDIVPKNKGFFNVRVIDKTYKGL 518 + L E K +V+ +VG Y+ L +V NK ++I+ G Sbjct: 483 NQLFWNNHLLVTESFKLNVE-KLLVGFRYEQL-------VVTTNKSSLQAKLINIENLGK 534 Query: 519 LWKITTKLVDDTI-VDLESVNDIEVDKTFGVTFDPIDVHLMEV 560 T L D T+ + LE + ++V + ++H ++ Sbjct: 535 HLVATISLFDTTLSMRLELNSHLKVGDSLNFIIKANNLHFFDI 577 Score = 96.3 bits (238), Expect = 6e-022, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 68/103 (66%), Gaps = 1/103 (0%) Query: 2 NERFLIEIEGLNKTFDDGFVSVRDINLKIKKGEFITILGPSGCGKTTTLRLLAGFEDPTY 61 N + IE++ + F + V++ +INL ++K + +++LGPSGCGKTTTL ++AG PT Sbjct: 3 NNKSAIELKNIVVDFGES-VAIDNINLSVEKHQLVSLLGPSGCGKTTTLAVIAGLIKPTS 61 Query: 62 GKIKVNGLDIKDLPIHKRPFATVFQDYALFSHLTVYKNIAYGL 104 G++ NG D+ P +R VFQ+YAL+ H+ V++NI + L Sbjct: 62 GQVLFNGYDVTKKPPQERKLGLVFQNYALYPHMNVFENIVFPL 104 >ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length = 848 Score = 86.7 bits (213), Expect = 6e-019, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 76/129 (58%), Gaps = 1/129 (0%) Query: 313 KRYLSRKLTKQEQHQKVCAVIELVGLKGNED-KLPEELSGGMKQRVALARSLVIEPDILL 371 K +L LTK KV ++ VGLK + P E SGG +QR+A+AR+L+ +P +++ Sbjct: 648 KPFLFFNLTKIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLII 707 Query: 372 LDEPLSALDAKVRKNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQVG 431 DE +SALD ++ + L+ + ++ LT + + HD + NR+++M+ G I++ G Sbjct: 708 ADELISALDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERG 767 Query: 432 SPADIYDSP 440 S +I+ +P Sbjct: 768 SVDEIFSNP 776 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 81.6 bits (200), Expect = 2e-017, Method: Compositional matrix adjust. Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 6/118 (5%) Query: 326 HQKVCAVIELVGLKGNEDKL----PEELSGGMKQRVALARSLVIEPDILLLDEPLSALDA 381 QK+ A+I+ V L+ D P LSGG KQRVA+A L + P I++ DE + LD Sbjct: 115 RQKIKAIIDEVTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDP 174 Query: 382 KVRKNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQVGSPADIYDS 439 K +K +++ + K+ +Q G I +THD EE + +++++VMNEG +++ G P +++ S Sbjct: 175 KAKKTIKQFMVKLAKQ-GKCVISITHDMEE-VTKADKVLVMNEGKLIKQGKPVEVFTS 230 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 76.6 bits (187), Expect = 6e-016, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Query: 321 TKQEQHQKVCAVIELVGLK-GNEDKLPEELSGGMKQRVALARSLVIEPDILLLDEPLSAL 379 +K + QK +E++GLK ++ P ELSGG K+RVA+A L IEP+IL+ DEP + L Sbjct: 132 SKYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGL 191 Query: 380 DAKVRKNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQVGSPADIY 437 D + + + + ++ QQ F ++TH E L +++ ++V+ +G +++ SP +++ Sbjct: 192 DPEGEREMMQLIKTAKQQQRTVF-MITHQMENVLEVADVVLVLAKGKLVKAASPYEVF 248 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 75.1 bits (183), Expect = 2e-015, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%) Query: 274 AAKRQIDKEYDKLVLAYNKKDYWTSYWETYSLQQQEAFEKRYLSRKLTKQEQHQ-KVCAV 332 A ++K + +L Y K + Y ++ A++ +S+ L + Q + + + Sbjct: 148 VANCPLEKCTSEQLLTYRKNNLGYVYQRYNLIELLSAYDNIAISQNLIPKYQRRLDIEEL 207 Query: 333 IELVGLKGNEDKLPEELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVRKNLQKELQ 392 E + +K K P E+SGG KQRVA+AR+++ EP +LL DEP ALD+ +N+ LQ Sbjct: 208 AEKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQ 267 Query: 393 KIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQ 429 I++ T ++VTHD + +NRI+ +++G I+ Sbjct: 268 TINKTYKQTILMVTHDVSLTRI-ANRIIKISDGKIVS 303 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 75.1 bits (183), Expect = 2e-015, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 70/116 (60%), Gaps = 2/116 (1%) Query: 338 LKGNEDKLPEELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVRKNLQKELQKIHQQ 397 +K N + LSGG +QR+ +AR++ ++PD+LL+DEP SALD+ +++ +Q++ ++ Sbjct: 216 VKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKEK 275 Query: 398 SGLTFILVTHDQEEALVLSNRIVVMNEGNILQVGSPADIYDSPKTEWIANFIGQAN 453 T ++VTH + + +++ + +G +++ G+ I+ PK + ++I N Sbjct: 276 --FTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQIFTKPKQKATNSYISGKN 329 >ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length = 402 Score = 71.6 bits (174), Expect = 2e-014, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 92/176 (52%), Gaps = 14/176 (7%) Query: 279 IDKEYDKLVLAYNKKDYWTSYWE-TYSLQQQEAFEKRYLSR-KLTKQEQHQKV------- 329 I K+ + + +K+ Y+ + + ++L +E +K Y S+ K KQ QK+ Sbjct: 125 IGKQVKEAIYVASKRRYFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPINVEK 184 Query: 330 --CAVIELVGLKGNEDKL---PEELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVR 384 +++ +G+ + +L P E SGGM+QR+ +A ++ EPD+++ DEP +ALD ++ Sbjct: 185 KTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQ 244 Query: 385 KNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQVGSPADIYDSP 440 + ++++ +T I ++H+ + + VM G I++ G +I+ +P Sbjct: 245 AKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNP 300 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 67.4 bits (163), Expect = 3e-013, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 11/125 (8%) Query: 6 LIEIEGLNKTFDDGFVS---VRDINLKIKKGEFITILGPSGCGKTTTLRLLAGFEDPTYG 62 +IE++ + K +G + ++ ++L IK +FI ILGPSG GKTT L +++G + + G Sbjct: 232 IIELKNVYKYITNGITTNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSG 291 Query: 63 KIKVNGLDI------KDLPIHKRPFATVFQDYALFSHLTVYKNIAYG--LKAMYTKLDPI 114 + VNG ++ K ++ +FQ Y L +LTV +NI G L+ +K I Sbjct: 292 SVIVNGYNMICLNDRKLTKFRQKYVGYIFQQYGLLPNLTVRENIEIGANLQPDPSKRISI 351 Query: 115 DKLVE 119 D L+E Sbjct: 352 DALLE 356 Score = 64.3 bits (155), Expect = 3e-012, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (61%), Gaps = 1/99 (1%) Query: 329 VCAVIELVGLKGNEDKLPEELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVRKNLQ 388 + A++E VG+ + KLP ELSGG +QRV++AR+ P ++ DEP ALD ++ + + Sbjct: 351 IDALLEAVGMDSLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVL 410 Query: 389 KELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNI 427 K+ I ++ T I+VTH+ A L++ ++ + +G I Sbjct: 411 KQFLAIKKRYQTTMIIVTHNNLIA-NLADLVIYVADGKI 448 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 62.4 bits (150), Expect = 1e-011, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query: 347 EELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVRKNLQKELQKIHQQSGLTFILVT 406 +LSGG +QRVA+AR+L+ EP IL DEP A++ + K + + + ++ G T ++VT Sbjct: 187 HKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIVT 246 Query: 407 HDQEEALVLSNRIVVMNEGNIL 428 H+ E+ + L+ R++ +++G I+ Sbjct: 247 HN-EKIVELAKRVIKIHDGKII 267 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507795|ref|NP_109744.1| spermidine/putrescine transport system permease [Mycoplasma pneumoniae M129] (286 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072703.1| spermidine/putrescine ABC transporter, permease... 360 e-101 >ref|NP_072703.1| spermidine/putrescine ABC transporter, permease protein (potB) [Mycoplasma genitalium G-37] Length = 285 Score = 360 bits (924), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/283 (62%), Positives = 207/283 (73%) Query: 1 MKLSKKYLLAVPFFVLMVIFFVVPMAWIIVSGLQNENGASITEKYQPLVGGYSFFQSFWT 60 M + KKY L +PFF+LM IFF++PMAWIIVSGLQ+E+GASI++KY+PLV G FF SFWT Sbjct: 1 MHIKKKYWLLLPFFLLMTIFFIIPMAWIIVSGLQSEDGASISQKYEPLVSGLGFFNSFWT 60 Query: 61 SLWXXXXXXXXXXXXXFPFCYFLSQSKNKVFRSFVIALATAPIWSSFXXXXXXXXXXXXX 120 SLW FPFCYFLSQSKNK+F++FVI++AT PIWSSF Sbjct: 61 SLWISIVTVIVALLFSFPFCYFLSQSKNKIFKAFVISIATVPIWSSFLIKLIGLKTLLDL 120 Query: 121 XXXXXXNRVGDNNLTFGSGYTLIGMIYLFTPFMFLPLYNNFCILPKNLILASQDLGYNWI 180 NRVGDNNLTFGSGYTL+G IYLFTPFMFLPLYN+FC+LPKNL+LASQDLGYNWI Sbjct: 121 LIGLSLNRVGDNNLTFGSGYTLLGTIYLFTPFMFLPLYNHFCVLPKNLLLASQDLGYNWI 180 Query: 181 TSFIKVVIPFSKTAILSGIALTFFPSLTSVAIAQFLDNSNQNNTLGNYVFTLGNNGYDSX 240 SF+KVVIPFSKTA+LSGIALTFFP+LTSVAIAQFLDNSNQ TLGNY+FTLGNNGYDS Sbjct: 181 YSFVKVVIPFSKTAMLSGIALTFFPALTSVAIAQFLDNSNQAETLGNYIFTLGNNGYDSA 240 Query: 241 XXXXXXXXXXXXXXXXXXXXXXVVIFAPRIVRLIQTKCLKYRR 283 V+F P+IVR++ K ++ + Sbjct: 241 IERGRAAGAIIIAALITFAIYFTVVFLPKIVRIVHNKWKQHEK 283 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507796|ref|NP_109745.1| spermidine/putrescine transport system permease [Mycoplasma pneumoniae M129] (286 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072704.1| spermidine/putrescine ABC transporter, permease... 386 e-109 >ref|NP_072704.1| spermidine/putrescine ABC transporter, permease protein (potC) [Mycoplasma genitalium G-37] Length = 284 Score = 386 bits (991), Expect = e-109, Method: Compositional matrix adjust. Identities = 191/282 (67%), Positives = 219/282 (77%) Query: 5 KSCKLWLRGSFFXXXXXXXXXXXXXXXXXSFNGSSTRGNIVLDFGNVLNPNPDAKSAYLR 64 K K ++ S+F S NGSS+RGNIVLDFGNVLNPNPD+KSAYLR Sbjct: 3 KHFKNLIKNSYFFLLITLIYLPLLIVVLVSLNGSSSRGNIVLDFGNVLNPNPDSKSAYLR 62 Query: 65 LGEADFAIPLLNSVIIGLITVIVSIPIAIMTAFALLRSRQWLNKTVFGIANFSLATPDII 124 LGE DFA PL+NS+IIG+ITV+VS+PIA+++AFALLR+R L KT+FGI NFSLATPDII Sbjct: 63 LGETDFATPLINSIIIGVITVLVSVPIAVISAFALLRTRNALKKTIFGITNFSLATPDII 122 Query: 125 TGISLVLLFANTWLSFNQQLGXXXXXXXXXXXXVPYALVLIYPKMQKLNRNLILASQDLG 184 T ISLVLLFANTWLSFNQQLG VPYAL+LIYPK+QKLN NLILASQDLG Sbjct: 123 TAISLVLLFANTWLSFNQQLGFFTIITSHISFSVPYALILIYPKIQKLNPNLILASQDLG 182 Query: 185 YSPIATFFHITLPYLLPSILSAILVVFATSFDDYVITSLVQGSVKTVASELYSFRKGIKA 244 YSP+ TFFHITLPYL+PSI SA+LVVFATSFDDYVITSLVQGSVKT+A+ELYSFRKGIKA Sbjct: 183 YSPLKTFFHITLPYLMPSIFSAVLVVFATSFDDYVITSLVQGSVKTIATELYSFRKGIKA 242 Query: 245 WAIAFGTXXXXXXXXXXXXXXXHKYLRFKHKEMLRVKQWKNS 286 WAIAFG+ KYLR K KE+++++QWKNS Sbjct: 243 WAIAFGSILILISVLGVCLITLQKYLREKRKEIIKIRQWKNS 284 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507797|ref|NP_109746.1| hypothetical protein MPN058 [Mycoplasma pneumoniae M129] (485 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072705.1| lipoprotein, putative [Mycoplasma genitalium G-37] 574 e-166 >ref|NP_072705.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 483 Score = 574 bits (1479), Expect = e-166, Method: Compositional matrix adjust. Identities = 292/496 (58%), Positives = 361/496 (72%), Gaps = 24/496 (4%) Query: 1 MKKQLKYWFSLMGLTMSVGLTACSSNQFVFANFESYVSPLLLERAEAKQPMTFLTYPTNE 60 MKKQLKY F + +++S L++C S FV ANFESY+SPLLLER + K P+TFLTYP+NE Sbjct: 1 MKKQLKYCFFSLFVSLSSILSSCGSTTFVLANFESYISPLLLERVQEKHPLTFLTYPSNE 60 Query: 61 KLINGFANNTYTVAVASSYAVSELQQQGHLLPIDWAKFNLKKTQNGSNQATIQNKEDAKE 120 KLINGFANNTY+VAVAS+YAVSEL ++ L PIDW++FNLKK+ + S++ + N DAK+ Sbjct: 61 KLINGFANNTYSVAVASTYAVSELIERDLLSPIDWSQFNLKKSSSSSDK--VNNASDAKD 118 Query: 121 LFTKEIGDIS--------GELLNWGVPYFLQDLVFVYRGEKIQELEGQDVTWSTIIKAIV 172 LF I +IS ELL+W VPYFLQ+LVFVYRGEKI ELE ++V+W+ +IKAIV Sbjct: 119 LFIDSIKEISQQTKDSKNNELLHWAVPYFLQNLVFVYRGEKISELEQENVSWTDVIKAIV 178 Query: 173 NHKDRFNNNRLALIDDARTIFSLANVVHHEVKNTTVDVNPTGSTLNYFGNVYESFANLGL 232 HKDRFN+NRL IDDARTIFSLAN+V+ N + DVNP + YF NVYESF LGL Sbjct: 179 KHKDRFNDNRLVFIDDARTIFSLANIVN--TNNNSADVNPKEDGIGYFTNVYESFQRLGL 236 Query: 233 KRDNLNTLFVNSDSNIIINELANGRRQGGIVYNGDAVYAALGGDLRDEINENNLPNGDNF 292 + NL+++FVNSDSNI+INELA+GRRQGGIVYNGDAVYAALGGDLRDE++E +P+G+NF Sbjct: 237 TKSNLDSIFVNSDSNIVINELASGRRQGGIVYNGDAVYAALGGDLRDELSEEQIPDGNNF 296 Query: 293 HIVQPKHSPVALDFLIINQQQTHFRDAAHQLIYQLALEGADQTAEELLKTDEEKGTSDED 352 HIVQPK SPVALD L+IN+QQ++F+ AH++I+ LAL+GADQT E+L+KTDEE GT DED Sbjct: 297 HIVQPKISPVALDLLVINKQQSNFQKEAHEIIFDLALDGADQTKEQLIKTDEELGTDDED 356 Query: 353 YYTYGAMQNFSYVNYVSPLKNISDETTGIVFKENKQADXXXXXXXXXXXXXXXXXXXXXX 412 +Y GAMQNFSYVNYVSPLK ISD +TGIV + A+ Sbjct: 357 FYLKGAMQNFSYVNYVSPLKVISDPSTGIVSSKKNNAEMKSKQMSTDQMTSEKEF----- 411 Query: 413 XXXDDFYTATXXXXXXXXXXXXX---XXXXVDTIKKTYKIKKADNINWANLIEKPITPLQ 469 D+YT T V+TIKK Y I+K +I W L+EKPI+PLQ Sbjct: 412 ----DYYTETLKALLEKEDSAELNENEKKLVETIKKAYTIEKDSSIRWNQLVEKPISPLQ 467 Query: 470 RSNLTLSWLDFKQRFW 485 RSNL+LSWLDFK +W Sbjct: 468 RSNLSLSWLDFKLHWW 483 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507798|ref|NP_109747.1| o-sialoglycoprotein endopeptidase [Mycoplasma pneumoniae M129] (319 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072706.1| O-sialoglycoprotein endopeptidase [Mycoplasma g... 495 e-142 >ref|NP_072706.1| O-sialoglycoprotein endopeptidase [Mycoplasma genitalium G-37] Length = 315 Score = 495 bits (1275), Expect = e-142, Method: Compositional matrix adjust. Identities = 230/319 (72%), Positives = 271/319 (84%), Gaps = 4/319 (1%) Query: 1 MEQPLCILGIETTCDDTSIGVITESKVQAHIVLSSAKLHAQTGGVVPEVAARSHEQNLLK 60 MEQPLC+LGIETTCDDT + ++ + K++++IV+SSA LH +TGGVVPE+AAR HEQNL K Sbjct: 1 MEQPLCVLGIETTCDDTGLSIVIDQKIKSNIVISSANLHVKTGGVVPEIAARCHEQNLFK 60 Query: 61 ALQQSGVVLEQITHIAYAANPGLPGCLHVGATFARSLSFLLDKPLLPINHLYAHIFSALI 120 A++ + ++HIAYA NPGL GCLHVGATFARSLSFLLDKPLLPINHLYAHIFS LI Sbjct: 61 AIRDLNFEIRDLSHIAYACNPGLAGCLHVGATFARSLSFLLDKPLLPINHLYAHIFSCLI 120 Query: 121 DQDINQLKLPALGLVVSGGHTAIYLIKSLFDLELIAETSDDAIGEVYDKVGRAMGFPYPA 180 DQD+N+L+LPALGLV+SGGHTAIYL+KS ++LELIAETSDDAIGEVYDK+GRAMGF YPA Sbjct: 121 DQDLNKLQLPALGLVISGGHTAIYLVKSFYELELIAETSDDAIGEVYDKIGRAMGFDYPA 180 Query: 181 GPQLDSLFQPELVKSHYFFRPSTKWTKFSYSGLKSQCFTKIKQLRERKGFNPQTHDWNEF 240 G ++DSLF ELVK HYFF+PSTKWTKFSYSGLKSQC KIKQ+ N DW+E Sbjct: 181 GSKIDSLFNKELVKPHYFFKPSTKWTKFSYSGLKSQCLNKIKQISA----NKTRIDWSEL 236 Query: 241 ASNFQATIIDHYINHVKDAIQQHQPQMLLLGGGVSANKYLREQVTQLQLPYLIAPLKYTS 300 ASNFQATIIDHYI+HVK+AI++ P+MLL+GGGVSAN YL +++ L LP+LIA KYTS Sbjct: 237 ASNFQATIIDHYIDHVKNAIKKFAPKMLLVGGGVSANSYLSNRISTLNLPFLIADSKYTS 296 Query: 301 DNGAMIGFYANLLINGKNN 319 DNGAMIGFYA+LLING N Sbjct: 297 DNGAMIGFYASLLINGDKN 315 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507799|ref|NP_109748.1| S-adenosylmethionine synthetase 2 [Mycoplasma pneumoniae M129] (383 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072707.1| S-adenosylmethionine synthetase (metX) [Mycopla... 585 e-169 >ref|NP_072707.1| S-adenosylmethionine synthetase (metX) [Mycoplasma genitalium G-37] Length = 383 Score = 585 bits (1507), Expect = e-169, Method: Compositional matrix adjust. Identities = 274/383 (71%), Positives = 323/383 (84%) Query: 1 MAKTIKHPRWGRYVAEAVGRGHPDKICDQIADSILDECIKQSPTSHVACEVFASKNLIMV 60 MA IK R GR+V+E+VG GHPDKICDQIADSILD+C+ QS TSHVACEVFASKNLI++ Sbjct: 1 MAIRIKSTRVGRFVSESVGLGHPDKICDQIADSILDQCLLQSKTSHVACEVFASKNLILI 60 Query: 61 GGEILTTGYVDVVQTGWKVLNRLGYTENDFSFLSCINSQSSEINQAVQSNDEIGAGDQGI 120 GGEI T+GYVDVVQT W++L LGY E DFSFLSCIN+QS EINQAV N+EI AGDQGI Sbjct: 61 GGEISTSGYVDVVQTAWRILRNLGYNETDFSFLSCINNQSLEINQAVLKNNEINAGDQGI 120 Query: 121 TVGYACSETEQLMPLGSIVAQALVQRAARIIDQYPFIKHDMKSQVVLNYTGNKVQCESVL 180 TVGYA +ET+QLMPLG ++A + +++A ++ Q+ F+K+DMKSQVVLNY+ N+V+CE VL Sbjct: 121 TVGYAVNETKQLMPLGVLLAHSFLKQAEKLTKQFDFLKNDMKSQVVLNYSLNQVECEEVL 180 Query: 181 MSVQHTQDVSLDQLRQTIINQVILPVLTEYGLNDPKIKHLVNPGGSFVVGGPMADTGLTG 240 +S+QHT +SL +LR+ I N VILPVL +YG D K LVNPGGSFV+GGPMADTGLTG Sbjct: 181 LSIQHTNAISLTELRKVIENNVILPVLNQYGFQDKKPTCLVNPGGSFVLGGPMADTGLTG 240 Query: 241 RKIIVDTYGPYANHGGGSFSGKDPTKVDRTGAYFARFIAKHIVSLGWAEECEVSISWVFS 300 RKIIVDTYGPYA+HGGGSFSGKDP+KVDRTGAYFARFIAKHIVSLGWA ECEVSISWVFS Sbjct: 241 RKIIVDTYGPYAHHGGGSFSGKDPSKVDRTGAYFARFIAKHIVSLGWASECEVSISWVFS 300 Query: 301 QPLPQSIQVKCFNINKEFSEQLINQVISQYFNWSVAKIIAKLKLLDQVEYFRYAVYGHFG 360 +P PQSI VKCFN N ++ E LIN+V++ YFNWS+ KII KLKLLD V+Y YAVYGHFG Sbjct: 301 KPNPQSITVKCFNTNIQYDEVLINRVVNNYFNWSITKIIDKLKLLDFVKYSDYAVYGHFG 360 Query: 361 HQTAPWEQLSERDSLQCLIKNFQ 383 + +PWEQ +E D L+CLIKNF Sbjct: 361 NDLSPWEQPTELDKLECLIKNFH 383 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507800|ref|NP_109749.1| signal recognition particle protein [Mycoplasma pneumoniae M129] (450 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072708.1| signal recognition particle protein (ffh) [Myco... 704 0.0 ref|NP_072964.1| cell division protein (ftsY) [Mycoplasma genita... 107 3e-025 >ref|NP_072708.1| signal recognition particle protein (ffh) [Mycoplasma genitalium G-37] Length = 446 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/439 (76%), Positives = 389/439 (88%) Query: 1 MFKSMISSIVMRSMQKKINAQTISETDVQAVLKEIRIXXXXXXXXXXXXKNFIKAIREQT 60 MFK+M+SSIVMR+MQKKINAQTI+E DV+ VLKEIRI KNFIKAIR++T Sbjct: 1 MFKAMLSSIVMRTMQKKINAQTITEKDVELVLKEIRIALLDADVNLLVVKNFIKAIRDKT 60 Query: 61 VGQTVEPGQDLQKWLLKVIKQELINILSQPNQEITSKRPLKVMVVGLQGSGKTTTCGKLA 120 VGQT+EPGQDLQK LLK IK ELINILSQPNQE+ KRPLK+M+VGLQGSGKTTTCGKLA Sbjct: 61 VGQTIEPGQDLQKSLLKTIKTELINILSQPNQELNEKRPLKIMMVGLQGSGKTTTCGKLA 120 Query: 121 VWLKKQFQQKAMLVALDIYRPAAIDQLATLAEQTESVFFAKGTQAPDQTTKEAVKTFKES 180 WL+K+++QK MLV LDIYRPAAI+QL TL++QT SVFFA+GTQ +TTK A+ FK + Sbjct: 121 YWLEKKYKQKTMLVGLDIYRPAAIEQLETLSQQTNSVFFAQGTQPVAKTTKAALSAFKTA 180 Query: 181 GCQAIICDTAGRLQTNQELMDELVAIKNELHPDEILMVVDGLSGQEIINVAKEFHNRLKL 240 CQ IICDTAGRLQTN+ LMDELV++KNEL+PDEI+MVVDGLSGQEIINVA+ FH RLKL Sbjct: 181 KCQTIICDTAGRLQTNETLMDELVSVKNELNPDEIIMVVDGLSGQEIINVAQTFHKRLKL 240 Query: 241 TGFIITKLDSDARAGAALSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGDVMT 300 TGFII+KLDSDARAGAALSL SLL+VPIKL+G SEKL GLEQFHPERIA+RILGLGDVM+ Sbjct: 241 TGFIISKLDSDARAGAALSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGDVMS 300 Query: 301 LVEKAEEVFDKQSLTKTVSKMFLGKMDLEDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDD 360 LVEKAE+VFDK+ LTKT+SKMFLGKMDLEDLL+YM+QM++MGSVSS++KMLP N +VS++ Sbjct: 301 LVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEE 360 Query: 361 HVESIEAKVKLWKVLINSMTREERRHPKLINRDPSRKQRIIKGSGRKMDELNKLMKEWSK 420 + E IE K++LWKVLINSMTREERRHPKLINRDP+RKQRIIKGSGRKMDELNKLMKEW+K Sbjct: 361 NAELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNK 420 Query: 421 LQTKTAEMGRMLKGGKNPF 439 +Q K EMG++LK G NPF Sbjct: 421 MQLKATEMGKLLKTGSNPF 439 >ref|NP_072964.1| cell division protein (ftsY) [Mycoplasma genitalium G-37] Length = 346 Score = 107 bits (267), Expect = 3e-025, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 32/204 (15%) Query: 103 MVVGLQGSGKTTTCGKLAVWLKKQFQQKAMLVALDIYRPAAIDQLATLA----------- 151 + VG+ G GKTTT K+A + KQ ++ +LVA D +R AI+QL A Sbjct: 140 LFVGVNGVGKTTTLAKIADFFIKQ-NKRVLLVAGDTFRAGAIEQLNQWAKLLNCDIVLPN 198 Query: 152 --EQTESVFFAKGTQAPDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELMDELVAIKNE 209 EQT +V F VK + ++CDT+GRLQ LM+EL I Sbjct: 199 PKEQTPAVIF------------RGVKKGIDDKYDFVLCDTSGRLQNKLNLMNELQKIYQI 246 Query: 210 LH------PDEILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAALSLTSL 263 + P E L+V+DG GQ ++ AK F+ KLTG ++TK+D A+ G L++ + Sbjct: 247 IQKVSGSEPSETLLVLDGTVGQTGLSQAKVFNEFSKLTGIVLTKMDGSAKGGIILAIKDM 306 Query: 264 LEVPIKLMGTSEKLTGLEQFHPER 287 +P+KL+G EK + L F E+ Sbjct: 307 FNLPVKLIGFGEKTSDLAIFDLEK 330 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507801|ref|NP_109750.1| purine-nucleoside phosphorylase [Mycoplasma pneumoniae M129] (238 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072709.1| purine-nucleoside phosphorylase (deoD) [Mycopla... 370 e-105 >ref|NP_072709.1| purine-nucleoside phosphorylase (deoD) [Mycoplasma genitalium G-37] Length = 320 Score = 370 bits (950), Expect = e-105, Method: Compositional matrix adjust. Identities = 180/238 (75%), Positives = 211/238 (88%) Query: 1 MTPHINAKKDDIAKVVLMPGDPLRAKWIAEQFMEKPRLVNEVRGMLAFTGQYKGKTITIM 60 MTPHI+AKKDDI+KVVLMPGDPLRAKWIAEQF+++ +LVNEVRGM A+TGQYK KT+T+M Sbjct: 83 MTPHISAKKDDISKVVLMPGDPLRAKWIAEQFLDQAKLVNEVRGMFAYTGQYKSKTVTVM 142 Query: 61 GHGMGIPSIGIYSYELMKFYEVNTIIRIGSCGALQGSLNLQDLIIAAKAWSESIYANDMG 120 GHGMGIPSIGIYSYELM FYEV TIIRIGSCGAL L L+DL+IA+KAWSESIYA DMG Sbjct: 143 GHGMGIPSIGIYSYELMNFYEVETIIRIGSCGALAPQLKLKDLVIASKAWSESIYAKDMG 202 Query: 121 VEVPADKILMASPQLVELAKKTANQLQLAFHEGLVFCEDAFHQIRKDVLKLAQEKHALAV 180 VE+P DKIL A+ LVELAK+TA + +L FHEGLVFCEDAF+Q RKDV+ LA+EK++LAV Sbjct: 203 VEIPEDKILFATSSLVELAKETAIKNKLDFHEGLVFCEDAFYQTRKDVISLAKEKNSLAV 262 Query: 181 EMEAHALYANAMLLNKQALTMLTVSDSLVTHAALPAEQRQATFKNMAILSLEMASQLV 238 EMEAHALYANA+LL K+ALT+LTVSDSLVTH AL +E RQ +FK MA+L+LEM +L+ Sbjct: 263 EMEAHALYANAILLKKKALTLLTVSDSLVTHEALSSELRQKSFKQMALLALEMTQKLI 320 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507802|ref|NP_109751.1| deoxyribose-phosphate aldolase [Mycoplasma pneumoniae M129] (224 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072710.1| deoxyribose-phosphate aldolase [Mycoplasma geni... 390 e-111 >ref|NP_072710.1| deoxyribose-phosphate aldolase [Mycoplasma genitalium G-37] Length = 223 Score = 390 bits (1001), Expect = e-111, Method: Compositional matrix adjust. Identities = 185/223 (82%), Positives = 201/223 (90%) Query: 1 MKLEYNRIIDSTLLKADTLPHEIDALCADAHKYQFYAVCVNPSYVRYAKNILKGTGVKLC 60 MKLEYNRIIDSTL+KADTLPHEID LCADAHKYQF+AVCVNPSYV YAKNILK T V+LC Sbjct: 1 MKLEYNRIIDSTLVKADTLPHEIDTLCADAHKYQFFAVCVNPSYVSYAKNILKNTAVQLC 60 Query: 61 TVVGFPLGQTTQRQKVYETKIAIKEGADEIDMVMNIAEFKKRCACVISEIRAVKKVCGKR 120 VVGFPLGQTTQ+QKVYE KIAIKEGADEIDMVMNIAEFKKRCACVI+EIRAVKKVCGKR Sbjct: 61 CVVGFPLGQTTQKQKVYEAKIAIKEGADEIDMVMNIAEFKKRCACVITEIRAVKKVCGKR 120 Query: 121 TLKVIIETALLNQDEIRDAVNVCIDGNADFVKTSTGFSMRGASLEDITIMREASGNLIKI 180 LKVIIETALL DEI+DAVNVCIDGNAD+VKTSTGFS RGASLED+ IM A+ NLIKI Sbjct: 121 KLKVIIETALLTNDEIKDAVNVCIDGNADYVKTSTGFSFRGASLEDVQIMNNAAANLIKI 180 Query: 181 KASGGVQTAQQFLDFFNAGVSRIGTSNAVKIMEELHKLESHEH 223 KASGG++TA+QF+D F AG SRIGTSNAV+IM+EL K+ H Sbjct: 181 KASGGIKTAKQFIDLFQAGASRIGTSNAVQIMQELKKMNHEYH 223 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507803|ref|NP_109752.1| thymidine phosphorylase [Mycoplasma pneumoniae M129] (421 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072711.1| thymidine phosphorylase (deoA) [Mycoplasma geni... 588 e-170 >ref|NP_072711.1| thymidine phosphorylase (deoA) [Mycoplasma genitalium G-37] Length = 421 Score = 588 bits (1515), Expect = e-170, Method: Compositional matrix adjust. Identities = 284/421 (67%), Positives = 338/421 (80%) Query: 1 MNIVNLISKKQRGKALTETEINWFVHSVNNKSLADYQVSAFLMAVWFQGMNSKELFCLTK 60 MNI+NLI+KKQRGKAL EINWFV++V NK++ADYQ++AFLMA+WF+GMN ELF LTK Sbjct: 1 MNIINLINKKQRGKALNLAEINWFVNAVLNKTIADYQITAFLMAIWFKGMNPNELFLLTK 60 Query: 61 AMVKSGESLHFNHHSKLSVDKHSTGGIGDKVSIALIPILTALDYSVAKLSGRGLGYTGGT 120 AMV +GE + FNHH K+SVDKHSTGGIGDKVS+AL+PILT+L +SVAKLSGRGLGYTGGT Sbjct: 61 AMVDTGEIIKFNHHGKISVDKHSTGGIGDKVSLALVPILTSLGFSVAKLSGRGLGYTGGT 120 Query: 121 IDKLEAVGVKTDFTPTEAQNLLDQNDCFIIGQSEGIAPVDKVLYALRDTTATVDSLPLIA 180 IDKLEAVGVKT+ T +AQ LD+NDCFIIGQS+ IAPVDKVLY LRD T TVDSLPLIA Sbjct: 121 IDKLEAVGVKTELTDQQAQACLDKNDCFIIGQSKDIAPVDKVLYGLRDITGTVDSLPLIA 180 Query: 181 SSVMSKKLAINNDYIFIDLKYGKGAFCKTKTMAKELAQYMYSIAKQFKRKLYIKLSDMNQ 240 SS+MSKKLA+ N+YIFIDLKYGKGAFCKTK +A ELA+ M SIAK FKRKL +KLSDMNQ Sbjct: 181 SSIMSKKLAVMNEYIFIDLKYGKGAFCKTKKIANELAKLMQSIAKSFKRKLSVKLSDMNQ 240 Query: 241 VLGKTIGNALEVLEVVHFLKRNWTEVGADFIQLMEQIVTEILIETKRAPNKRAAVALYHA 300 VLGK +GN +EV E V+FLK++ +VG DFI LM+ IV IL+ETK+A K+ A+ LY Sbjct: 241 VLGKAVGNVIEVNEAVNFLKQDLDQVGQDFIDLMQTIVINILLETKQAKTKQKAIELYQD 300 Query: 301 TLEGEKPWQRFLKFIELQGSSWERFLDLKELFNPQYKAPVLASQSGTLSYTSPVDLAMVS 360 L +K W RFL FIE QG + E F + F P+YKA + A +SG L +T P+DLA + Sbjct: 301 VLTSKKAWNRFLSFIESQGGNVELFTQKEGFFKPKYKASIKAEKSGILHFTDPIDLAKIG 360 Query: 361 ISLGAGRMVKTDLIDPMAGIKLVKQANEVVKAGDTVLELYSSKPITPAHIEAAQHTIIIK 420 I+LGAGRM KTD IDPMAG+ L+K+ NE V GDTVL LYSS PI+ +I AAQ TIII Sbjct: 361 INLGAGRMKKTDQIDPMAGLFLMKKDNESVAVGDTVLNLYSSSPISNEYISAAQKTIIIN 420 Query: 421 Q 421 + Sbjct: 421 K 421 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507804|ref|NP_109753.1| cytidine deaminase [Mycoplasma pneumoniae M129] (133 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072712.1| cytidine deaminase (cdd) [Mycoplasma genitalium... 192 1e-051 >ref|NP_072712.1| cytidine deaminase (cdd) [Mycoplasma genitalium G-37] Length = 130 Score = 192 bits (488), Expect = 1e-051, Method: Compositional matrix adjust. Identities = 87/129 (67%), Positives = 108/129 (83%), Gaps = 1/129 (0%) Query: 1 MKVDLDWVHHKLQEVVNHAYTPFSKFKVACMLVANNQAFYGVNIENASYPVTLCAERSAI 60 MKV+L+W+ +LQ +V AYTPFS FKVACM++ANNQ F+GVNIEN+S+PVTLCAERSAI Sbjct: 1 MKVNLEWIIKQLQMIVKRAYTPFSNFKVACMIIANNQTFFGVNIENSSFPVTLCAERSAI 60 Query: 61 ANMVTSIGKATIDYVFVYFDTKTPTNSPCGMCRQNIFEFATDKTQLFCIEKDKSFKQFTI 120 A+MVTS G IDYVFVYF+TK +NSPCGMCRQN+ EF+ KT+LFCI+ D S+KQF+I Sbjct: 61 ASMVTS-GHRKIDYVFVYFNTKNKSNSPCGMCRQNLLEFSHQKTKLFCIDNDSSYKQFSI 119 Query: 121 PEILKGGFR 129 E+L GF+ Sbjct: 120 DELLMNGFK 128 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507805|ref|NP_109754.1| two functions are possible, as both enzymes are homologous to each other: phosphomannomutase or phosphoglucomutase [Mycoplasma pneumoniae M129] (554 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072713.1| phosphomannomutase (manB) [Mycoplasma genitaliu... 691 0.0 >ref|NP_072713.1| phosphomannomutase (manB) [Mycoplasma genitalium G-37] Length = 550 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/550 (61%), Positives = 425/550 (77%), Gaps = 7/550 (1%) Query: 7 LEAQRWLSHPRVKPNLKEVITAMSAEEIEHFFSLKKPSFGTAGVRGKMAPGYHGMNVFSY 66 LE +RWL+HP V LK+ I ++ EI+ FSL+KP FGTAGVR KMAPGYHGMNVFSY Sbjct: 6 LEVERWLNHPNVNWELKQQIKELNESEIQELFSLEKPLFGTAGVRNKMAPGYHGMNVFSY 65 Query: 67 AYLTQGYVNYIQSLNPTKKPLRFLVARDTRKHGALFNGIVCDVITSMGHVVYMFDNNEPT 126 AYLTQGYV YI+S+N K+ LRFLVARDTRK+G LF VCDVITSMGH+ Y+FD+N+P Sbjct: 66 AYLTQGYVKYIESINEPKRQLRFLVARDTRKNGGLFLETVCDVITSMGHLAYVFDDNQPV 125 Query: 127 PTPLVSYVIKKYHFDGGVNVTASHNPKTDNGFKIYDGHGAQLLDFQTDQLIAMLPPVVTM 186 TPLVS+VI KY F GG+N+TASHNPK DNGFK+YD GAQLLD QT+QL++ LP V +M Sbjct: 126 STPLVSHVIFKYGFSGGINITASHNPKDDNGFKVYDHTGAQLLDTQTNQLLSDLPCVTSM 185 Query: 187 LDFEPRGNNELLHFLDNEVVYKNYFDDLKESLVVDNDSFKNLPVVFTGLHGTSVKLLPRF 246 LD E + N + +H LDNE VYKNYF +LK+ LV++N++FK++ VVF+GL+GTSV L+ RF Sbjct: 186 LDLELQPNPKFVHTLDNEKVYKNYFRELKKVLVINNNNFKDIKVVFSGLNGTSVCLMQRF 245 Query: 247 LTYLGYSNIISVQPQNVFDANFANADHLNPESKDTWELARQYASNTKAKLMMAIDPDADR 306 L YLGYSNIISV+ QN FD NF NA +LNPE KDTW LA++YA AKL++ DPDADR Sbjct: 246 LKYLGYSNIISVEEQNWFDENFENAPNLNPEYKDTWILAQKYAKKNNAKLIIMADPDADR 305 Query: 307 FAIAEWNPQTQDWHYFSGNESGVMVAYYKLKHKQFKRQPYIVTTVVSTDLVDKIAKKYGA 366 FAIAE N WHYFSGNE+G + AYYKL HK FK PYIV+T VST LV+KIAK+YGA Sbjct: 306 FAIAELN--NNQWHYFSGNETGAITAYYKLNHKVFK-SPYIVSTFVSTYLVNKIAKRYGA 362 Query: 367 FVKRTNVGFKFIGQAVNHFSKDNELVVAFEEAIGMMASDGLNREKDSFQAAAIMLEIARY 426 FV RTNVGFK+IGQA+N S+ NELVV FEEAIG++ SD LNREKD++QAAA++LEIAR+ Sbjct: 363 FVHRTNVGFKYIGQAINELSQTNELVVGFEEAIGLITSDKLNREKDAYQAAALLLEIARH 422 Query: 427 CHNKGISLLEFYRGEIFGEFGDYYNWTVPHTIH--GVNWKEKMEQVLHQLTTATIKEVVG 484 C + I+LL+FY+ I EFG+Y+N T+ H +WKE+++ + +QL A + EV G Sbjct: 423 CKEQNITLLDFYK-RILSEFGEYFNLTISHPFKATATDWKEEIKALFNQLINANLTEVAG 481 Query: 485 HKITKIKNYVDINLVEYVLENGNWIKFRISGTEPKLKLYFNLSNGYLAALKHEAKKMHEF 544 K+ K+ N++E+ ENG W+KFR SGTEPKLK YF+L+NG AL+ +AKK+++F Sbjct: 482 FKVVKVHLDKQTNILEFGFENG-WVKFRFSGTEPKLKFYFDLTNGTREALEKQAKKIYKF 540 Query: 545 LVRLLNLDKA 554 V LL L+KA Sbjct: 541 FVNLLKLNKA 550 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507806|ref|NP_109755.1| transcription antitermination factor [Mycoplasma pneumoniae M129] (320 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072714.1| hypothetical protein MG054 [Mycoplasma genitali... 486 e-139 >ref|NP_072714.1| hypothetical protein MG054 [Mycoplasma genitalium G-37] Length = 316 Score = 486 bits (1250), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/320 (73%), Positives = 276/320 (86%), Gaps = 7/320 (2%) Query: 1 MEQVELIPQWYVAPVSVKDEAVVRNLKAKVKALGFDNEILDVRVLKEREVIEEVFSLKSG 60 M+ EL P+WYVAPVS+KDEAVV+NLKAK++ALGF++EI+DV+VLKEREV EEV+SLKSG Sbjct: 1 MQASELTPKWYVAPVSIKDEAVVKNLKAKIQALGFNHEIVDVKVLKEREVHEEVYSLKSG 60 Query: 61 KLPRSLKNTAFTKWFVLDEDRYLKVKISEKNLLGRYIYIKMIYSEDAWRIIRNFPGITGI 120 KLPRSLKNT F KWFVLD+ RYL+VKISEKNLLGRYIYIKMIYSEDAWRI+RNFPGITGI Sbjct: 61 KLPRSLKNTTFNKWFVLDDYRYLRVKISEKNLLGRYIYIKMIYSEDAWRIVRNFPGITGI 120 Query: 121 VGSSGRGALPTPLDQADADNLEQMLKGISVNPKKRVLVTNTAIVEMDADKFDEKCQYILK 180 VGSSGRGALP PLD+ DA+NLEQMLKGIS+NP KR+++TNTAI+EMD+DKFDEK QYILK Sbjct: 121 VGSSGRGALPIPLDEKDANNLEQMLKGISINPSKRIMLTNTAIIEMDSDKFDEKFQYILK 180 Query: 181 HKQV--KPEAIAQVNESGEIIDTNQFAQALME-ANKAEQDEWNEDVAIVKSEANKVDPSV 237 KQ KP+ +E EI+D + +A + N EQDEW E I++SE K+DPSV Sbjct: 181 QKQAIQKPKE----DEDSEIVDAEKLKEAFKKLQNSQEQDEWKEKATIIQSEQTKLDPSV 236 Query: 238 LIPYLGKYEIVEGDTKVDQLQQFSVGNLVEVHLTGAIHIQGQIKALYQGTINKAVVEVEL 297 L+P+LGKYEI++ D KV+QL +FSVGNLVEVHLT IH+QGQIKALYQGT+NKAVVE+EL Sbjct: 237 LVPFLGKYEILDTDNKVEQLFEFSVGNLVEVHLTDTIHVQGQIKALYQGTVNKAVVEIEL 296 Query: 298 TTKTQLINLPLENLSFIEVE 317 T+KTQLINLPLENLSF+E E Sbjct: 297 TSKTQLINLPLENLSFVEFE 316 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507807|ref|NP_109756.1| Preprotein translocase subunit SecE [Mycoplasma pneumoniae M129] (125 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072715.1| hypothetical protein MG055 [Mycoplasma genitali... 103 6e-025 >ref|NP_072715.1| hypothetical protein MG055 [Mycoplasma genitalium G-37] Length = 123 Score = 103 bits (257), Expect = 6e-025, Method: Compositional matrix adjust. Identities = 60/120 (50%), Positives = 72/120 (60%) Query: 4 KKLPFGLKNKEKLTAYNDEKIHELHRQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 63 KKLPF K KEKLTAY+D IHELH+QL Sbjct: 3 KKLPFSFKKKEKLTAYDDASIHELHKQLKLRTEAKKSKDKERTKEKEKHESLAKEKKPKL 62 Query: 64 XFTKKFSNLWFGIDKEVNKIVWVTSKKLITIFLLIVLVSAIMIGIYFGINHLFIALGVFK 123 F K+ NLWFG+DKE+NKIVWV ++LI IFLLI+LVS +M+GI+FGIN L I LG+FK Sbjct: 63 PFKKRIVNLWFGVDKEINKIVWVKGRQLIIIFLLILLVSGLMVGIFFGINQLLITLGIFK 122 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507808|ref|NP_109757.1| ribosomal protein L33 type2 [Mycoplasma pneumoniae M129] (48 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072716.1| ribosomal protein L33, putative [Mycoplasma gen... 88 2e-020 >ref|NP_072716.1| ribosomal protein L33, putative [Mycoplasma genitalium G-37] Length = 48 Score = 87.8 bits (216), Expect = 2e-020, Method: Compositional matrix adjust. Identities = 42/48 (87%), Positives = 43/48 (89%) Query: 1 MRKKIIFVCQDCLSRNYVMSWSKQVLNRLIINKYCKHCNQKTKHLDSF 48 MRKKIIFVCQDCLSRNYV W+KQ L RLIINKYCK CNQKTKHLDSF Sbjct: 1 MRKKIIFVCQDCLSRNYVKRWTKQPLQRLIINKYCKQCNQKTKHLDSF 48 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507809|ref|NP_109758.1| hypothetical protein MPN070 [Mycoplasma pneumoniae M129] (127 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072717.1| hypothetical protein MG055.2 [Mycoplasma genita... 139 9e-036 >ref|NP_072717.1| hypothetical protein MG055.2 [Mycoplasma genitalium G-37] Length = 127 Score = 139 bits (350), Expect = 9e-036, Method: Compositional matrix adjust. Identities = 72/127 (56%), Positives = 83/127 (65%) Query: 1 MKVIKKLNLLNELTMLVCIFFFVCTISLIGIGIMYDLINRTSLSAPRRDPIFRNLNTXXX 60 MKV KKL+ LNE+ +L+ IFF VC ISL+GIGI++DLI + SLSA R DPIF NL Sbjct: 1 MKVFKKLHNLNEILLLISIFFLVCIISLVGIGIIFDLIRKASLSAIRSDPIFFNLRAVLI 60 Query: 61 XXXXXXXXXXXAQLVMSNMAANIINEVAENVEQKFAKALKWSRFLPFGLLQLYCYHKIKL 120 QLV+S M IN EN+E KF K L WS FLPFGLLQLYCY KIKL Sbjct: 61 VLGVFAICFMIIQLVISIMIWKTINTACENIEPKFKKILHWSCFLPFGLLQLYCYQKIKL 120 Query: 121 VTQTDNI 127 V Q DN+ Sbjct: 121 VKQADNL 127 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507810|ref|NP_109759.1| hypothetical protein (yabC) homolog; similar to Swiss-Prot Accession Number P37544, from B. subtilis [Mycoplasma pneumoniae M129] (276 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072718.1| hypothetical protein MG056 [Mycoplasma genitali... 360 e-101 >ref|NP_072718.1| hypothetical protein MG056 [Mycoplasma genitalium G-37] Length = 277 Score = 360 bits (923), Expect = e-101, Method: Compositional matrix adjust. Identities = 172/276 (62%), Positives = 212/276 (76%), Gaps = 1/276 (0%) Query: 1 MPALKVIATPIGNIEEVSPRVKAALTKCEVLFCEDTRVTKKLLGLLGIDFSNKQFIINNE 60 M LKV+ATPIGNI+E+S R K AL CEVLFCED+RVT+K+L LL ID K+F+INN Sbjct: 1 MKTLKVVATPIGNIQEISERAKKALQDCEVLFCEDSRVTRKMLDLLNIDCKQKKFVINNS 60 Query: 61 FKEKQNLSKVANLIHQYHCGLVSDAGYPSVSDPGHILVEYVRTQLPQIAIEVINGPSALV 120 FKEKQNL+ I + C LVSDAGYPS+SDPG+ ++ ++ ++ +I IEVINGPSAL+ Sbjct: 61 FKEKQNLTFAEEFITNFKCCLVSDAGYPSLSDPGNEMINWIISKNKEIRIEVINGPSALM 120 Query: 121 CGLVTSGFPESPLLFLGFLDHKPTQVTQTLKHYQNFQGTIVLFEAVHRLQQTLEVIQTVF 180 CGL+TSGF +PLLFLGFL HK Q+ L YQN + TIV FEAVHRL+ TLE ++ VF Sbjct: 121 CGLITSGFKTTPLLFLGFLSHKQNQLKNYLSTYQNQKSTIVFFEAVHRLENTLETVKNVF 180 Query: 181 SNTEVFVGRELTKLHESHYWFNTSA-PLPDITLKGEFVIVINNHHTQPVGQYSDQLLKQE 239 N +VF+GRELTKLHESHYWFNTS LPDITLKGEFVIVI+N + S+Q L E Sbjct: 181 KNNDVFIGRELTKLHESHYWFNTSENTLPDITLKGEFVIVIDNQNINHQTLSSNQYLVYE 240 Query: 240 ITQLVQMGVKVKDACHYLAKRLQLKSNKLYTLFHES 275 I +L+ +GVK+KDAC+YLAK++ LKS+ LYTLFHES Sbjct: 241 IKKLMDIGVKLKDACNYLAKKMHLKSSMLYTLFHES 276 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507811|ref|NP_109760.1| similar to nucelotidyl transferase/polynicleotide cleavage [Mycoplasma pneumoniae M129] (178 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072719.1| hypothetical protein MG057 [Mycoplasma genitali... 182 1e-048 >ref|NP_072719.1| hypothetical protein MG057 [Mycoplasma genitalium G-37] Length = 178 Score = 182 bits (463), Expect = 1e-048, Method: Compositional matrix adjust. Identities = 107/178 (60%), Positives = 130/178 (73%) Query: 1 MDKKTRLKLDGVIVCEGKTDQARLQQLFDVSVITTNGSALNQRTINLIKAVAKKQPVILF 60 MD+K R+K+DGVIVCEGKTDQA+LQQ+FDV VITTNGSAL + TINLIK +++KQ VIL Sbjct: 1 MDQKARIKIDGVIVCEGKTDQAKLQQIFDVDVITTNGSALKKETINLIKKISEKQTVILL 60 Query: 61 LDPDVAGQKIRRQLEQHLDKYESCFIARKDMKPNSTKIGVAEATDAALIQALQQRQVFTK 120 LDPD G+KIR +LEQHL Y +C++ N+ K G+AE +ALI AL R TK Sbjct: 61 LDPDQQGKKIRSKLEQHLTNYYNCYVDMNARLKNAKKAGIAEMETSALIAALNNRVAITK 120 Query: 121 TTQPTLSWEQYLELNLNSKSKRLALCNKLHLSYFNHKQLFRKLNLLQLTFDQVCQLLK 178 ++ W+QYL L LN K KRL LCN L+L YFNHKQLF+KLNLL LTF V + LK Sbjct: 121 NANQSILWDQYLSLKLNDKKKRLLLCNNLNLPYFNHKQLFKKLNLLNLTFQDVWKHLK 178 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507812|ref|NP_109761.1| phosphoribosylpyrophosphate synthetase [Mycoplasma pneumoniae M129] (388 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072720.1| ribose-phosphate pyrophosphokinase (prs) [Mycop... 512 e-147 >ref|NP_072720.1| ribose-phosphate pyrophosphokinase (prs) [Mycoplasma genitalium G-37] Length = 297 Score = 512 bits (1319), Expect = e-147, Method: Compositional matrix adjust. Identities = 241/292 (82%), Positives = 268/292 (91%) Query: 97 FADGETYIRFEESVRNKDVFIFQSTCAPVNDSLMELLIAIDALKRGSAKSITAILPYYGY 156 FADGETYIRF+ESVRNKD++IFQSTC VNDSLMELLIAIDALKRGSAKSITAILPYYGY Sbjct: 6 FADGETYIRFDESVRNKDIYIFQSTCPNVNDSLMELLIAIDALKRGSAKSITAILPYYGY 65 Query: 157 ARQDRKTMGREPITSKLVADLLTTAGVSRVALTDIHSDQTQGFFNIPVDTLRTYHVFLTR 216 ARQDRKT GREPITSKL+AD+LT AG +RV LTDIHSDQTQGFF+IPVD+LRTYH+FL R Sbjct: 66 ARQDRKTKGREPITSKLIADMLTKAGANRVVLTDIHSDQTQGFFDIPVDSLRTYHIFLFR 125 Query: 217 TVELLGKKDLVVVSPDYGGVKRARLIATSLELPLAIIDKRRPAHNVAESINVLGEVANKN 276 +ELLGKKDLVVVSPDYGGVKRARLIA +LELPLAIIDKRRP+HNVAESINVLGEV NKN Sbjct: 126 VIELLGKKDLVVVSPDYGGVKRARLIANTLELPLAIIDKRRPSHNVAESINVLGEVKNKN 185 Query: 277 CLIVDDMIDTGGTVIAAAKLLREHHAKKVCVMATHGLFNGEAPQRFQKAFNEGLVDYLFV 336 CLIVDDMIDTGGTVIAAAKLL++ AKKVCVMATHGLFN +A Q+F +AF++ L+D+LFV Sbjct: 186 CLIVDDMIDTGGTVIAAAKLLQKEQAKKVCVMATHGLFNNDAEQKFMEAFDQKLIDFLFV 245 Query: 337 SNSIPQTKFDQCPQFQVIDLAPLFEEVLLCYANNSSISAIYTRHIEWIKKHV 388 SNSIPQ KF QF+V+DLA L+EEV+LCYAN+ S+SAIY RHIEWIKKHV Sbjct: 246 SNSIPQYKFKAVKQFEVVDLASLYEEVVLCYANSLSVSAIYERHIEWIKKHV 297 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507813|ref|NP_109762.1| hypothetical protein (A43259) homolog; similar to GenBank Accession Number A43259, from E. hirae [Mycoplasma pneumoniae M129] (147 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072721.1| small protein (smpB) [Mycoplasma genitalium G-37] 209 2e-056 >ref|NP_072721.1| small protein (smpB) [Mycoplasma genitalium G-37] Length = 145 Score = 209 bits (531), Expect = 2e-056, Method: Compositional matrix adjust. Identities = 95/144 (65%), Positives = 124/144 (86%) Query: 1 MRVLVNNPRAQYDYYLLTGYCAGLVLKGSEVKSLALGQGSLKEAYVFIDKHEVYIKDFSI 60 M +LVNNP+A+YDY+L+ YCAG+VLKGSEVK+L+LGQGSLKEAYVF+ +E++++ F+I Sbjct: 1 MLILVNNPKAKYDYHLMESYCAGIVLKGSEVKALSLGQGSLKEAYVFVKNNELFLEQFTI 60 Query: 61 SPYAFSGEFNHPFKRVKKLLLNRNEIKQITARQKQEGLSIIPLKVFFKNGKIKMEIWLAK 120 PY+F+G NH R+KKLLLN++EIKQI +++Q+ LS+IP KVFF+NGKIK+EIWLAK Sbjct: 61 PPYSFAGPLNHASDRIKKLLLNKHEIKQIINKKQQQSLSVIPSKVFFRNGKIKVEIWLAK 120 Query: 121 PKKKFDKREAIKSKTIQRELRQQY 144 PKKKFDKRE IK KTI+REL +Y Sbjct: 121 PKKKFDKRETIKKKTIRRELEAEY 144 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507814|ref|NP_109763.1| Glycosyl Transferase [Mycoplasma pneumoniae M129] (299 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072722.1| hypothetical protein MG060 [Mycoplasma genitali... 352 3e-099 ref|NP_072685.1| hypothetical protein MG025 [Mycoplasma genitali... 142 4e-036 >ref|NP_072722.1| hypothetical protein MG060 [Mycoplasma genitalium G-37] Length = 297 Score = 352 bits (902), Expect = 3e-099, Method: Compositional matrix adjust. Identities = 170/293 (58%), Positives = 215/293 (73%), Gaps = 1/293 (0%) Query: 1 MKISVIISTYNCGALIVKALCSLVSNQTPACELEVLVIDDGSIDNTRQIIKKFQAKVS-F 59 MK+SVII TYNC + I KA+ S+V N+ E+EVL+IDDGSIDNT ++IKK Q +++ Sbjct: 1 MKLSVIIPTYNCASFIEKAINSIVKNRPNDLEIEVLIIDDGSIDNTNKVIKKIQDQINNL 60 Query: 60 TLKYFYKKNGNWGSVINYVKENRLANGDWITVLDSDDTLKPNTLNKLANLVEKADYDLVV 119 TL+YFYK NGNWGSVINYV+ N+LA G+W+TVLDSDD T++ +K YD ++ Sbjct: 61 TLQYFYKSNGNWGSVINYVRNNKLAKGEWVTVLDSDDIFSKKTISIFQKYAQKQRYDAII 120 Query: 120 FDYTKCWKKIKLKIHTYPTWWKNMTRELQKQTPFCIPLGKFLKRNLFYKLPKLKEKVSFQ 179 FDY KCWKK KI TY + K + EL+KQTPFCIPL KF K +FY+LPKL+E V FQ Sbjct: 121 FDYYKCWKKFLWKIPTYARFRKEIKGELKKQTPFCIPLAKFFKNEVFYQLPKLRENVGFQ 180 Query: 180 DALYTASSLKLAKKVRHVNQSGGNYHFKRAGNSMSIPWNIKRFSAELDICKDLIRLNAQE 239 DA+YT +L++A V HV+++GG Y FKR GNSMSIPW+ RF E+ ICKDLI NAQE Sbjct: 181 DAIYTMHALQIANNVFHVSKAGGYYFFKRVGNSMSIPWHSSRFDIEVQICKDLIENNAQE 240 Query: 240 IALVHLLRQQFRVQLKEKQIQLAVTRDFNFSGFSWYTRCFLWMVYQTMLKRYF 292 IALVHLLR +FR + +K+I+ V RDF FSGFSWY+R L ++Y LKRYF Sbjct: 241 IALVHLLRLKFRNLVDDKKIKFTVKRDFCFSGFSWYSRLILSLMYNFWLKRYF 293 >ref|NP_072685.1| hypothetical protein MG025 [Mycoplasma genitalium G-37] Length = 298 Score = 142 bits (358), Expect = 4e-036, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 145/261 (55%), Gaps = 8/261 (3%) Query: 4 SVIISTYNCGALIVKALCSLVSNQTPACELEVLVIDDGSIDNTRQIIKKFQAKVSFTLKY 63 +VII TYNC I KAL SL+ + +VL+++DGS+DNT++++ + K S + Y Sbjct: 8 TVIIPTYNCCQYIKKALDSLLLQNEYFLKTQVLIVNDGSLDNTKEVVSDYLIKYS-NISY 66 Query: 64 FYKKNGNWGSVINYVKENRLANGDWITVLDSDDTLKPNTLNKLANLVEKADYDLVVFDYT 123 F K NGNWGSVINYVK+N+LA G +ITVLDSDD ++ K+A +D+++ + Sbjct: 67 FEKTNGNWGSVINYVKKNKLALGQYITVLDSDDYFLKDSFKKVARFF---GHDMIIGAFY 123 Query: 124 KCWKKIKLKIHTYPTWWK-NMTRELQK-QTPFCIPLGKFLKRNLFYKLPKLKEKVSFQDA 181 C+ P + K + +E K +TP P+ KF LFY+L LKEK+ FQD Sbjct: 124 -CYINENKTRFLKPYFGKTGVIKEHTKLRTPHSQPIAKFYSNKLFYELHDLKEKLFFQDC 182 Query: 182 LYTASSLKLAKKVRHVNQSGGNYHFKRAGNSMSIPW-NIKRFSAELDICKDLIRLNAQEI 240 L ++ + V ++ + + R GNS + W N +F+A +I + + A + Sbjct: 183 LMYHDAINRVESVFYLREPLAVWFSTRPGNSTTTSWENPNKFNAWCEILQKMNLYGAGIV 242 Query: 241 ALVHLLRQQFRVQLKEKQIQL 261 ++ + F QLK+KQ+ L Sbjct: 243 IYIYTMLPGFLKQLKKKQLIL 263 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507815|ref|NP_109764.1| hypothetical protein MPN076 [Mycoplasma pneumoniae M129] (564 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072723.1| hypothetical protein MG061 [Mycoplasma genitali... 585 e-169 >ref|NP_072723.1| hypothetical protein MG061 [Mycoplasma genitalium G-37] Length = 461 Score = 585 bits (1507), Expect = e-169, Method: Compositional matrix adjust. Identities = 278/473 (58%), Positives = 359/473 (75%), Gaps = 12/473 (2%) Query: 92 MMGLMCLCFPFLIIGDPLGGNNQLTLLRPLSKEVMGKLSSLSSQLHEGQLLGPVMAEGKT 151 MMG+MC+CFPFLIIGDPL G+NQLTLLRPLS V +LSSLSS L GQLLGPVM GKT Sbjct: 1 MMGIMCVCFPFLIIGDPLNGHNQLTLLRPLSDSVKTQLSSLSSNLQVGQLLGPVMINGKT 60 Query: 152 MLADGQTIDLVQGLDKNLIGTSSSIAGYALFIIFRSTIAIGGTTLVTYSQPLIASLSTQR 211 MLADG +++L++GLD N IGT++SI GYALFIIFRSTIAIGGTTLV Y+QP IA+LS+ R Sbjct: 61 MLADGTSVELIKGLDGNSIGTAASITGYALFIIFRSTIAIGGTTLVVYTQPAIANLSSNR 120 Query: 212 RKSVLSNANLWGFNSGIVVAFVPFLFQSVQQAGTKYWVFILTALILIGFGILCVFAWFEK 271 +KS+LSNANLWGFN GI V F PFLF+ VQQ ++YWV+I+T +IL+ F LC+F WFE Sbjct: 121 KKSILSNANLWGFNIGIAVVFTPFLFEQVQQVASQYWVYIMTVMILVVFANLCLFLWFES 180 Query: 272 QMDPFMPQKQTKEQMQLGNQPSAGDILKRKATWKMIGMYGICLVVLVNPLTGGWWNILQA 331 ++D PQKQTKE M L QP + DILK K TWK+IG+YGI L+++VNPLT W++ILQ Sbjct: 181 KIDHIFPQKQTKENMSLTTQPKSIDILKNKTTWKLIGVYGIVLILIVNPLTPAWFSILQT 240 Query: 332 VSPASSFNVKDGVKTLKPLEGAGGYFAGLPTLAILWVLGYGMGYMVFSPFNKTVYDRKRW 391 VSP+ S L G Y GL TLAI WV+GY +G++VFSPFNKT+YD+KRW Sbjct: 241 VSPSGS----------NGLISTGVYTTGLATLAIFWVIGYALGFVVFSPFNKTIYDKKRW 290 Query: 392 LSFMFFMNALMVIVIVLFAATLGVGTAVGFAFVAIATFIGGSFAWSMQSTILILPHEFKE 451 + F+ N +++++I++FAATLG+G+A GFA ++I +FIGG+FAWS+ S+ LILP+EFK+ Sbjct: 291 MHFLLTANIVVLLIIIMFAATLGIGSAAGFALISIFSFIGGAFAWSLSSSNLILPYEFKD 350 Query: 452 YKRSEVSVLFGYIWGFGYVIYTAFDITNSMFLEAPKLANPGMKGVSILPXXXXXXXXXXX 511 YK++E+ +LFG+ WGFGY+ YT FDIT S+FL+AP L KG SILP Sbjct: 351 YKKNELPILFGFCWGFGYIAYTLFDITQSVFLQAPVLIQG--KGTSILPGVIVSIVFFLG 408 Query: 512 XXXXXXXXXXTLPSSYLKNGDELVSEMTKKWKLNQWQFLVASKEKNRYADLLK 564 P+ ++K+GD+LV EMT+KWKLN+WQF++A+K+KNRY++LLK Sbjct: 409 LIALANLIVKFFPACWIKDGDQLVQEMTRKWKLNEWQFVIANKQKNRYSELLK 461 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507816|ref|NP_109765.1| hypothetical protein MPN077 [Mycoplasma pneumoniae M129] (546 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072723.1| hypothetical protein MG061 [Mycoplasma genitali... 514 e-147 >ref|NP_072723.1| hypothetical protein MG061 [Mycoplasma genitalium G-37] Length = 461 Score = 514 bits (1323), Expect = e-147, Method: Compositional matrix adjust. Identities = 248/462 (53%), Positives = 326/462 (70%), Gaps = 7/462 (1%) Query: 91 MMGLMCVCFPFLIIGSPLGGHNELTLLRPASSEVISKLTKIXXXXXXXXXXXXXXXXXXT 150 MMG+MCVCFPFLIIG PL GHN+LTLLRP S V ++L+ + T Sbjct: 1 MMGIMCVCFPFLIIGDPLNGHNQLTLLRPLSDSVKTQLSSLSSNLQVGQLLGPVMINGKT 60 Query: 151 MLADGTPVSLIKGINGNEIGTSASMTGYAFFIIFRSTIAIGGTTLIAYAQPIIASLSSNR 210 MLADGT V LIKG++GN IGT+AS+TGYA FIIFRSTIAIGGTTL+ Y QP IA+LSSNR Sbjct: 61 MLADGTSVELIKGLDGNSIGTAASITGYALFIIFRSTIAIGGTTLVVYTQPAIANLSSNR 120 Query: 211 KKSILSNANFWGFNVGLVIVAAPFLIPGVGRFATANWVWVVTFMILLVFAMLLVFAWFEK 270 KKSILSNAN WGFN+G+ +V PFL V + A+ WV+++T MIL+VFA L +F WFE Sbjct: 121 KKSILSNANLWGFNIGIAVVFTPFLFEQVQQVASQYWVYIMTVMILVVFANLCLFLWFES 180 Query: 271 KVDHMLPQKQSKTNQSLSVRPSALSILKRKTTWKLLAIAGVGTILLINPLTQTWFNSLLA 330 K+DH+ PQKQ+K N SL+ +P ++ ILK KTTWKL+ + G+ IL++NPLT WF+ L Sbjct: 181 KIDHIFPQKQTKENMSLTTQPKSIDILKNKTTWKLIGVYGIVLILIVNPLTPAWFSILQT 240 Query: 331 ISGA------KKAIIPTARPILLILWVMGYLLGYFLLSPFNKTIYDKKRWLHFIFTANAV 384 +S + + T L I WV+GY LG+ + SPFNKTIYDKKRW+HF+ TAN V Sbjct: 241 VSPSGSNGLISTGVYTTGLATLAIFWVIGYALGFVVFSPFNKTIYDKKRWMHFLLTANIV 300 Query: 385 LVLLIVIFAATLGLNXXXXXXXXXXXXXXXXXXXWSLGSSILILPYEYKEYKRNEVSIIF 444 ++L+I++FAATLG+ WSL SS LILPYE+K+YK+NE+ I+F Sbjct: 301 VLLIIIMFAATLGIGSAAGFALISIFSFIGGAFAWSLSSSNLILPYEFKDYKKNELPILF 360 Query: 445 GYVWGFAYVFYSIFDIITSVFLDAPRIATGNTSANILPGAIAAIVLFVSLLLVINWVIIY 504 G+ WGF Y+ Y++FDI SVFL AP + G ++ ILPG I +IV F+ L+ + N ++ + Sbjct: 361 GFCWGFGYIAYTLFDITQSVFLQAPVLIQGKGTS-ILPGVIVSIVFFLGLIALANLIVKF 419 Query: 505 LPSSWIKNGDECVSEMTKKWRITQWQFLIANKAKNRYADLLK 546 P+ WIK+GD+ V EMT+KW++ +WQF+IANK KNRY++LLK Sbjct: 420 FPACWIKDGDQLVQEMTRKWKLNEWQFVIANKQKNRYSELLK 461 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507817|ref|NP_109766.1| fructose-permease IIBC component [Mycoplasma pneumoniae M129] (694 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072724.1| PTS system, fructose-specific IIABC component (... 921 0.0 >ref|NP_072724.1| PTS system, fructose-specific IIABC component (fruA) [Mycoplasma genitalium G-37] Length = 680 Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/692 (66%), Positives = 540/692 (78%), Gaps = 12/692 (1%) Query: 1 MFKPLLSAELFFNWTAKDFKDKTSFLKQACRVLQDKNCIKEEQIALTALKEREAQITTGI 60 MFK LL LFFNW+ K FK+K SFLKQA LQ + I + +A ALK+RE +ITTGI Sbjct: 1 MFKNLLRPSLFFNWSQKTFKNKFSFLKQAANALQKQAVINDNNVAFEALKKREEEITTGI 60 Query: 61 MSKLALPHMQSATVLKPFVAVFKVNNVDWQSLDNQPVKLIFLIGVPKDQGNLHLEFISQF 120 ++ LALPH+QS +V++PFVAVFKV N+DWQSLD +PVKLIFLIGV D+ NLHL+FIS F Sbjct: 61 ITSLALPHLQSQSVIEPFVAVFKVKNLDWQSLDQKPVKLIFLIGVLVDKTNLHLDFISNF 120 Query: 121 SKLMLQDEFANKVPNIRSFNGLINLIDSFQQTAVASQPVVNEAAAQTEEPKDTNTQYDFV 180 SKLML + FA+KV N+ S+NGLI LID F Q V QP V +T +YDFV Sbjct: 121 SKLMLNETFASKVLNVTSYNGLIKLIDLFNQQKVQDQPAV-----------ETKKEYDFV 169 Query: 181 AVTACPTGIAHTFMAKEALEKFARDHNLKVKVETQGTDGIQNQLTESDLNNTKGIILACD 240 AVTACPTGIAHTFMAKEALE FA+ HNL VKVETQGTDGIQNQLT D+NN KG+ILACD Sbjct: 170 AVTACPTGIAHTFMAKEALEAFAKKHNLYVKVETQGTDGIQNQLTSDDINNAKGVILACD 229 Query: 241 RLIDLTRFYGHANVVEVSTTKAIKTPQTVYDQVVKKEGKLLGNKSSDSASQTELKETTEQ 300 RLID +RFY + NV+EVSTTKAIK P VY+ + ++GK L N S+ +QT+L E+ + Sbjct: 230 RLIDFSRFYANKNVIEVSTTKAIKKPDEVYELIKNQKGKQLAN-SAKPTNQTQLAESEGE 288 Query: 301 LSFKDFHKRIYRAILSGVSYMLPFVVFGGILIAIAFLIDINNAGNAGKQFGSKDPIANWF 360 +F +FHKRIYRAILSGVSYMLPFVVFGGILIA++FLIDINNA NAG FG+ +P+ANW Sbjct: 289 FNFNNFHKRIYRAILSGVSYMLPFVVFGGILIALSFLIDINNANNAGGNFGTINPVANWL 348 Query: 361 KTLGGLSFGLIVPILSAYIAFALVGRQGLLPGFIVGLISAGKFLLNIDIVTGKIDWATES 420 LGG+SF LIVPILSAYIA+ALV RQGLLPGF+VGLIS+G+FLLNI + G I+W S Sbjct: 349 NKLGGISFSLIVPILSAYIAYALVSRQGLLPGFVVGLISSGQFLLNIVLTNGTIEWLAPS 408 Query: 421 KVSSGXXXXXXXXXXXXXXXXVQQRYIYRKLPQALQGIKNILFIPLLGTLVTAALFWVIN 480 +VSSG VQQ YIY+KLPQ+LQGIKNILFIPL GTL TA LFWVIN Sbjct: 409 QVSSGFFGAIFGGLLSACLIIVQQNYIYKKLPQSLQGIKNILFIPLFGTLFTAGLFWVIN 468 Query: 481 IPLIYLNYGLSKFLQIMDKPYLAPLLGLVIGLMMCFDLGGPVNKAAYVFGVVSLESQNSG 540 IPLIYLNYGLS FL IM+ P LAPLLG VIGLMMCFDLGGP+NKAAYVFGVVSL++QN+G Sbjct: 469 IPLIYLNYGLSLFLNIMNSPILAPLLGFVIGLMMCFDLGGPINKAAYVFGVVSLQNQNAG 528 Query: 541 TVAMASAILSGMVPPLGIAIAATIRKQCFDKEELPAAYACYVMGLSFISEGAIPFVAKRP 600 T++MA+A+LSGMVPPL IA+AA+IRK CFDK+ELPAAYACY+MGLSFISEGAIPFV K+P Sbjct: 529 TISMAAAMLSGMVPPLSIALAASIRKSCFDKQELPAAYACYLMGLSFISEGAIPFVVKKP 588 Query: 601 KIMLAANLIGGAVCGVLTGAFALTIRAPHGGVFVFALLKTNLEGIAGNTLQXXXXXXXXX 660 K+ML ANLI GA+CG LTGAFAL+IRAPHGGVFVFALLKT L+GI G TLQ Sbjct: 589 KVMLTANLIAGAICGALTGAFALSIRAPHGGVFVFALLKTTLQGIEGATLQTGVGIGLAL 648 Query: 661 XXXXXSSFISAGIIIGHNLLVVRKKTKQLVNT 692 S + + IIIG++L+ + KQ +N+ Sbjct: 649 VCLIISMIVGSSIIIGYDLIAKHNQRKQNLNS 680 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507818|ref|NP_109767.1| 1-phosphofructokinase [Mycoplasma pneumoniae M129] (300 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072725.1| 1-phosphofructokinase (fruK) [Mycoplasma genita... 267 9e-074 >ref|NP_072725.1| 1-phosphofructokinase (fruK) [Mycoplasma genitalium G-37] Length = 255 Score = 267 bits (683), Expect = 9e-074, Method: Compositional matrix adjust. Identities = 140/257 (54%), Positives = 183/257 (71%), Gaps = 2/257 (0%) Query: 44 MALFGIKPTVLTFLGQPTKDLFLQLLKPYQLDLVSFPATTQTRINVKLLDGAQTTEINDV 103 M G PTV+TFLGQPTK+LFL+L+KPY L++VSF + T+TRIN+KLL +TTEIND+ Sbjct: 1 MKSLGFDPTVITFLGQPTKNLFLELVKPYDLNIVSFISETKTRINLKLLKDEKTTEINDL 60 Query: 104 TPLIEEQAVHEMIAYLKANVKPNDLLVLNGRFLQRDLVKLLDVAFSLTKYVVLDVDEPXX 163 +PLI + + E++ +LKANVK NDL+++NGRF L K+L++ F+LT+ VV+DVDE Sbjct: 61 SPLITDANLTELLTFLKANVKNNDLVIINGRFKFEALEKVLNLVFTLTENVVIDVDESKM 120 Query: 164 XXXXXXXXPWLMKPNRDEFVAMVNANNSNVDQQELVQLIKQFQTTQNLLMSDGAQGAYFF 223 P +MKPN DEF M+N DQQ L+ IK+F + LL+SDG +GAY F Sbjct: 121 LTLLNQSKPLVMKPNIDEFQTMINTFFH--DQQSLIAAIKKFHYCKLLLLSDGDKGAYLF 178 Query: 224 DQQQLLFMEAIPPQQLVSTTGAGDTLLGVFLANLLLDKDPVGSLKVAVNYASATISKLAV 283 DQ +LLF+ +I P+Q+VSTTGAGDTLL VFLANL+L D +L A NYASATISKL V Sbjct: 179 DQNKLLFVSSITPKQVVSTTGAGDTLLAVFLANLILKVDLKTALIKATNYASATISKLGV 238 Query: 284 VNSNDQIVLKATNYYYL 300 V+S D+I + YYL Sbjct: 239 VDSKDKISVITPKSYYL 255 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507819|ref|NP_109768.1| Probably ABC transporter membrane protein subunit [Mycoplasma pneumoniae M129] (1386 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072726.1| hypothetical protein MG064 [Mycoplasma genitali... 1674 0.0 ref|NP_073138.1| hypothetical protein MG468 [Mycoplasma genitali... 118 4e-028 >ref|NP_072726.1| hypothetical protein MG064 [Mycoplasma genitalium G-37] Length = 1331 Score = 1674 bits (4336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 876/1392 (62%), Positives = 1038/1392 (74%), Gaps = 67/1392 (4%) Query: 1 MRNLIKNVFRSFRTAKIALIALTFLIFVAVGSXXXXXXXXXXXXASFQHVTEQGQLSNAI 60 M NLIKNV RS ++AKIALIALTFLIFVAVG A+F +VT G+LSNAI Sbjct: 1 MLNLIKNVIRSLKSAKIALIALTFLIFVAVGGFVLLNNTVNNFNAAFNYVTHTGKLSNAI 60 Query: 61 INERYDFGKLEFQKTSNDATSSAQPSVSTRSTLTAQKANGANSSFTLTLTPDSRTSFINN 120 INERYDFGKLEFQ+ +N++ +S+ SFTLTLT DSRTSFINN Sbjct: 61 INERYDFGKLEFQEQTNNSQNSSD-------------------SFTLTLTNDSRTSFINN 101 Query: 121 ALQLKPDVYNSLVTVTFSYGSESDQTKKTQIEEQSKLIAANNLSRALQTDKELLVTGQLE 180 AL+ P +Y LVT TFSY ++++ T+KT I QSK+IAANNL+ AL DK+LLV+GQLE Sbjct: 102 ALRTNPSLYEGLVTQTFSYQNKTEMTEKTNIVNQSKIIAANNLNNALSKDKQLLVSGQLE 161 Query: 181 QLKATFRTYKAINITDQGVFKKLIASEPTDQVNRLVLFDGHQLARSRQVEFNELFSQFTQ 240 +L A FR YKAINITD+ VFKKLI SEP D VN LV+FDG L+ S+Q +FN +QF + Sbjct: 162 KLNAVFREYKAINITDKSVFKKLIVSEPNDLVNSLVIFDGQNLSSSKQSDFNNFLNQFNE 221 Query: 241 VQAKGKDQLSTTLKNGNYEQLLQAIANNFGSSETELLKEIQDALKXXXXXXXXXXXXXXX 300 +++KGKD LSTTLK G Y+ LQ + + +SET L ++Q + Sbjct: 222 IKSKGKDNLSTTLKTGQYQAFLQTLFDYAQASETTLKDQLQKLISNPDSSETN------- 274 Query: 301 XXXKLKNLFDSGSTFTNIAGKLTLQWMEGTNKKQLVIFDPSSYETVVAPGNWSYEQQQGK 360 ++KNLFD+ ST TNI G+LTLQW E + KQ+VIFDPSSYET+VAPGNW+Y+QQ GK Sbjct: 275 ---QVKNLFDTPSTLTNIGGQLTLQWTENSLTKQIVIFDPSSYETIVAPGNWTYQQQLGK 331 Query: 361 AVYQDINHWNRIKRLPFNEFEREFQKIDKRYKMLVDKIEYLILGVGITPDFVYPVFSESL 420 VY DIN+W IK+LP +FE EF KID++YK+ +D I+YL++GVGI+PDFVYPVFS SL Sbjct: 332 EVYPDINNWESIKKLPLEQFESEFLKIDQKYKISIDNIDYLVIGVGISPDFVYPVFSASL 391 Query: 421 LIPNTANEQLYYVNQTGYERTASSFLTNPTETGIVARLPNLNHDLDVINQWAVKNMSWPP 480 ++PN NEQLYYVNQTGYERT SSFLTNP ET IVARL NL DL+ INQWAV+NMSWP Sbjct: 392 IVPNIENEQLYYVNQTGYERTFSSFLTNPVETAIVARLINLESDLNTINQWAVENMSWPT 451 Query: 481 NLKAAYSNTDTTNILNLLAARTVFIPNLINTISLVSSFLTIAILLVAIFVTILILVSYLK 540 N+KAAYS++DTTNILNLLAARTVFIPNLINTI+LV+ FLTIAIL VAI V+ILIL+SYLK Sbjct: 452 NIKAAYSSSDTTNILNLLAARTVFIPNLINTINLVALFLTIAILTVAIIVSILILISYLK 511 Query: 541 KNTEQIGILKANGVSGRKINLSLLIFSLIPGIVGSFIGYTLGISMQNVAINLFSNYWFIP 600 KNTEQIGILKANG+SG+KINLSLLIF LIP IVG+ GY+ GI Q+VAI+LFSNYWFIP Sbjct: 512 KNTEQIGILKANGLSGKKINLSLLIFGLIPAIVGAISGYSFGIGFQDVAIHLFSNYWFIP 571 Query: 601 TQTXXXXXXXXXXXXXXXXXMMSGISLFVGWLILRQDVVKILKHDSEFKVSHLGLWAKWL 660 T T +MS ISL VG +IL++DVVKILKHDSEFKVS LGL +K L Sbjct: 572 TATSSFSVVGLLFFSLFVILIMSSISLLVGSIILKKDVVKILKHDSEFKVSRLGLSSKKL 631 Query: 661 FAKFGIMTRFRVALAFNAPWKLVFLTLMSALTMMILNLSFATKDAFQVAQTKTTLTQSNH 720 FA+FGIMTRFRVALAFNAPWKLVFLTLMS+ TMMILNLSFATKD+F+ AQ+KT LT NH Sbjct: 632 FARFGIMTRFRVALAFNAPWKLVFLTLMSSFTMMILNLSFATKDSFENAQSKTNLTNQNH 691 Query: 721 QYEFELASPTEQSGLLKWQLFAELGATDDRTTDAVKLANRRMEIQSVDESKKWKNQQVIN 780 QYEFELAS T QSGLLKWQLFAELG TD R+ +VKLAN+RM+I +VD SK WKNQQVIN Sbjct: 692 QYEFELASATTQSGLLKWQLFAELGTTDKRSESSVKLANKRMDISNVDASKDWKNQQVIN 751 Query: 781 FVTDATGFSNDINYLENIVQSKIGLDYSLGFGNVSSNPWKLSETLMPANQASASNTAFQN 840 F++DA+GFSND+NYLENIVQSKIGLDYSLGF N+ SNPW+LSETLMP NQASASNTAFQN Sbjct: 752 FLSDASGFSNDLNYLENIVQSKIGLDYSLGFNNIVSNPWRLSETLMPTNQASASNTAFQN 811 Query: 841 FLKAIIVIDPNEGGKYIKQTKDEVTVRFLYEIDSSKALKNGNTKSVNKIQKSTAAPQAQQ 900 FLKAII I+P++G ++IKQT+D +T RF+Y IDS KALKN N Q Sbjct: 812 FLKAIITINPSQGSQFIKQTQDPLTKRFIYAIDSDKALKNNN---------------EQN 856 Query: 901 GQSNQLMLDNDFAKFLYKQFNLIKEGGKADPVDLNNFDFANQNQIKRFYSKYNALPPVDY 960 G N L L++DFAKFLY QF LIK+ G A DLN DF N I+ FY+KYNALPP+DY Sbjct: 857 GSQNHLTLNDDFAKFLYSQFELIKKSGNASNEDLNAIDFENPQTIRDFYNKYNALPPLDY 916 Query: 961 KLAFNVIGLPKETIANQKDAPLFGFLTLQAQLGNDAIKIKGIKDWKLDNTNLGPVLRTNE 1020 KL+FNVIGLPKETIA Q D P +GFLTL + N IKIKGIKDWK NLGPVL Sbjct: 917 KLSFNVIGLPKETIAGQIDTPKYGFLTLHGEYQNTPIKIKGIKDWKDKVDNLGPVLSDQN 976 Query: 1021 DEIINQRLFSKP--NGIIINSSAAKKYRLKEGSQLHVKIHNGYKRVNAKLVNQDPTLTAT 1078 + IINQ LF + +I+N+SAAKKY+L GS++++ ++N +KR++ K++NQDP + AT Sbjct: 977 NHIINQELFKNYSFDPLIVNNSAAKKYQLAIGSEINIAVNNSFKRIDNKIINQDPLVNAT 1036 Query: 1079 FNIVGINNSVHEPEFYTSYKTAATLLQYPNEWIEKQLPFNSFYANSILPFTQSTSLFSES 1138 F +VGINNS H+PEF+TSY TA +L+YPNEW K+LPFNSFYANS+L F QSTSLFSES Sbjct: 1037 FRVVGINNSAHDPEFFTSYSTAFKVLEYPNEWFVKKLPFNSFYANSLLSFVQSTSLFSES 1096 Query: 1139 GLFPGTSSFAANNTVLTEVIKKTIEGGKTNSKTDVQKRAAQATANGKYNSSQNN----KM 1194 G+FP TSSF+ NNTVL E+IKKTI NG+ N + +N K Sbjct: 1097 GIFPATSSFSTNNTVLVELIKKTIN-----------------YKNGQMNQTSSNDSSKKE 1139 Query: 1195 NYERLQKALGITSDLDSSKAGEYATILERVYDGLPYNSTISFISNVQANDALFANXXXXX 1254 NY++LQKALGI++DL+ SK EY IL RVY+GLPYNSTISFISNV AN+ALF N Sbjct: 1140 NYQKLQKALGISTDLEISKVNEYVAILARVYNGLPYNSTISFISNVAANNALFGNIANTT 1199 Query: 1255 XXXXXXXXXXXXXXXMLIVLLVSTTLIQELKKIAIRLKALGYSNPKILLSFLSIYLPLFI 1314 MLI+LLVSTTLIQELKKIAIRLKALGYSN KIL SFLSIY+PLF Sbjct: 1200 KQIQAVVIAVIIPIIMLIILLVSTTLIQELKKIAIRLKALGYSNLKILASFLSIYIPLFA 1259 Query: 1315 FGXXXXXXXXXXXXXXHNQVIFSSAAILLEATLNFPTVILSMLVLSGVLSITFVLNWLEL 1374 FG HN+VIF+S++I L+A L+F + I SMLVL VLSITFVLNWLEL Sbjct: 1260 FGLLISIPFSIYLIALHNEVIFASSSIFLDAFLSFESAIGSMLVLLAVLSITFVLNWLEL 1319 Query: 1375 NKIKIAKEIKNS 1386 NKIKI KEIKNS Sbjct: 1320 NKIKIDKEIKNS 1331 >ref|NP_073138.1| hypothetical protein MG468 [Mycoplasma genitalium G-37] Length = 1783 Score = 118 bits (295), Expect = 4e-028, Method: Compositional matrix adjust. Identities = 130/549 (23%), Positives = 243/549 (44%), Gaps = 35/549 (6%) Query: 330 TNKKQLVIFDPSSYETVVAPGNWSYEQQQGKAVYQDINHWNRIKRLPFNEFEREFQKIDK 389 T+++ LV+ P ++ VV+ W + + + W + P N F + Sbjct: 730 TDQQNLVVQTPEAHGAVVSQ-QWLFRHNKEILPQEGEYAWKTALQTP-NNFPNWLNDLPD 787 Query: 390 RYKMLVDKIEYLILGVGITPDFVYPVFSESLLIPNTANEQLYYVNQTGYERTASSFLTNP 449 RYK ++ + + ILG+G + + YPV S +PNT +E L +VN Y + Sbjct: 788 RYKFSINGLTFAILGIGESVETGYPVLSLQSPLPNTQDEALIFVNDQAYRSILFAVPAAN 847 Query: 450 TETGIVARLPNLNH--DLDVINQWAVKNMSW--PPNLKAAYSNTDTTNILNLLAARTVFI 505 E + +L D D + A + + P A++ D + L AR F Sbjct: 848 QENYYAFKSTDLKQHTDQDPVQFIANRLEGYLDVPRSDLAFNVKDISKFNYLTTARNYF- 906 Query: 506 PNLINT-ISLVSSFLTIAILLVAIFVTILILVSYLKKNTEQIGILKANGVSGRKINLSLL 564 P+L+ + +++VS+ + I ++++A+++ IL++ S++KKN + I++A G S K + + Sbjct: 907 PDLVQSYLAIVSTVIAIFLIILALYLIILLIKSFIKKNQTEFSIIRAGGFSTTKFIVGMS 966 Query: 565 IFSLIPGIVGSFIGYTLGISMQNVAINLFSNYWFIPTQTXXXXXXXXXXXXXXXXXMMSG 624 +F+ I IV SF+G ++ + + YWFI + Sbjct: 967 VFAGIVAIVSSFLGVLFAFLLEGQVKGIINRYWFIALPENSFNWLSFFGSFFITFFVFEF 1026 Query: 625 ISLFVGWLILRQDVVKILKHDSEFKVSHLGLWAKWLFAKFGIMTRFRVALAFNAPWKLVF 684 IS + + V ++ +E K S L K +T+FRV+L + +L Sbjct: 1027 ISWIAFKQLFSKPVNVLIDQGNETKFSVLLHLLKHKSHTMSPLTKFRVSLIVSRFSRLFT 1086 Query: 685 LTLMSALTMMILNLSFATKDAFQVAQTKTTLTQSNHQYEFELASPTEQSGLLKWQLFAEL 744 +S++ ++++ ++ F AQT T+L + N Y+ L +PTEQSG Q ++ Sbjct: 1087 YVGLSSVALLLIGIAGTIPQKFSAAQTSTSLNR-NFNYKLNLQTPTEQSGWYAIQPYSHF 1145 Query: 745 GATDDRTTDAVK-LANRRMEIQSVDESK------KWKNQQ-------------VINFVTD 784 G TD+ + +K L N ++ S +E K KN+Q + N + Sbjct: 1146 GVTDNN--NGIKTLYNESVQANSQNEHPYKPSNLKLKNRQDQPIKAADGTELELGNLLLP 1203 Query: 785 ATGFSNDINYLENIVQ----SKIGLDYSLGFGNVSSNPWKLSETLMPANQASASNTAFQN 840 + G + +N EN + SK +D+ + G + NPW++ E +P + + Sbjct: 1204 SYGGAQQLNTDENFFRHASLSKWIIDFPIRVGGSNINPWEIVEKSIPKQITQLLSASSDQ 1263 Query: 841 FLKAIIVID 849 FL +++ D Sbjct: 1264 FLISVLTDD 1272 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507820|ref|NP_109769.1| glutamine transport ATP-binding protein [Mycoplasma pneumoniae M129] (465 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 627 0.0 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 203 3e-054 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 160 2e-041 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 90 4e-020 ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding prote... 88 2e-019 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 87 5e-019 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 84 2e-018 ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasm... 76 8e-016 ref|NP_072781.1| galactoside ABC transporter, ATP-binding protei... 74 4e-015 ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasm... 73 5e-015 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 72 2e-014 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 69 1e-013 ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasm... 66 6e-013 ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasm... 65 2e-012 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 627 bits (1616), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/466 (65%), Positives = 368/466 (78%), Gaps = 1/466 (0%) Query: 1 MRYFALTDLTKPTAKFTTDAMELRQISNAYLNQAQAYLQKGLKQLKKDYKNAILYTPKTE 60 M +F+L + KP KFT++ E QI+ YL ++Q YLQKGLKQLKK+YK +I+Y P E Sbjct: 1 MDFFSLNKIIKPNQKFTSNEAEFLQIATDYLEESQNYLQKGLKQLKKEYKRSIIYNPNLE 60 Query: 61 YKRFLKWKQTFLQDLNQTQKRFFIVRAQHFSYVLLFNLLDEQVEAVIATFNNFLDEH-RL 119 YKRF+KWK+ F + RFFI + H+S LLF+ ++EQ+E VIA++N+FL+EH +L Sbjct: 61 YKRFVKWKENFTETFESYYDRFFITKYNHYSLSLLFSFINEQIETVIASYNSFLNEHNKL 120 Query: 120 EAQSKQFDLDTAVNELHDYFDQLQKNTAYSEDLPTHLTQKTEQLINARNTQLTNLLNKIA 179 F + + E F+ L+KNTA S+DLP +T QL R +L NLLNKI Sbjct: 121 AFNKVSFSFEKKLFEATQQFNNLEKNTAISDDLPLQFKVRTTQLKAQRERELKNLLNKIK 180 Query: 180 TTKPPLNKQQRLLASFRNYHEHLFLKNEVKKVTWLNEPRAKKESVTPDEEHIIELKNVYK 239 KQ+ LL ++ N +E LFLKNEVKKV WLN PR K+++ D+++IIELKNVYK Sbjct: 181 LKNLSEKKQEILLNNWFNSNERLFLKNEVKKVNWLNSPRQKQQAAQIDDQNIIELKNVYK 240 Query: 240 YITNGVTTNAVLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEM 299 YITNG+TTNAVLKG+DL +K+HDFIVILGPSGSGKTTLLNIISGMDR SSGSV+VNG M Sbjct: 241 YITNGITTNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNM 300 Query: 300 ICMNDRQLTNFRRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRINIDELLEAVGM 359 IC+NDR+LT FR+ YVGYIFQQYGLLPNLTVREN+E+GANLQ +P KRI+ID LLEAVGM Sbjct: 301 ICLNDRKLTKFRQKYVGYIFQQYGLLPNLTVRENIEIGANLQPDPSKRISIDALLEAVGM 360 Query: 360 KHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRY 419 LQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIK+RY Sbjct: 361 DSLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRY 420 Query: 420 KTTMVIVTHNNLIAQLADLVIYVADGKIQALQANPNPKQVEDINWI 465 +TTM+IVTHNNLIA LADLVIYVADGKI++L N NPKQVE+I+WI Sbjct: 421 QTTMIIVTHNNLIANLADLVIYVADGKIKSLHRNLNPKQVEEIHWI 466 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 203 bits (517), Expect = 3e-054, Method: Compositional matrix adjust. Identities = 113/263 (42%), Positives = 167/263 (63%), Gaps = 4/263 (1%) Query: 205 KNEVKKVTWLNEPRAKKESVTPDE--EHIIELKNVYKYITNGVTTNAVLKGIDLKLKAHD 262 K K + LN+ K++S+ E ++ I K V K +TNG+ + I+LK+ + Sbjct: 24 KKASKLIKKLNKKHPKRKSLNSFEAKKYDIYFKEVCKAVTNGINNQLICNHINLKILPGE 83 Query: 263 FIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTNFRRNYVGYIFQQY 322 F+VILG SGSGKT+LL++IS +DRP+SG V G IC +D +LT R VGYIFQQY Sbjct: 84 FVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNTICCSDAKLTALRNKNVGYIFQQY 143 Query: 323 GLLPNLTVRENVEVGANLQRNPDKRINIDELLEAVGMKHLQKKLPNELSGGQQQRVSIAR 382 GLL +L V +N+++ L++ + + + +H KK+ ++LSGGQQQRV+IAR Sbjct: 144 GLLRDLDVDDNIKLALPLKKRFNNNLEELLERLEL-KEHRHKKV-HKLSGGQQQRVAIAR 201 Query: 383 AFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVIVTHNNLIAQLADLVIYV 442 A K P ++FGDEPTGA+++++++ +L+ F+ + TT+VIVTHN I +LA VI + Sbjct: 202 ALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIVTHNEKIVELAKRVIKI 261 Query: 443 ADGKIQALQANPNPKQVEDINWI 465 DGKI N NPK +E INW+ Sbjct: 262 HDGKIIVDYLNQNPKTIEQINWV 284 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 160 bits (405), Expect = 2e-041, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 127/199 (63%) Query: 249 AVLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLT 308 ++L + L++ + ++ILG SGSGKTTLLN+I G D S GS +V + QL Sbjct: 103 SILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLL 162 Query: 309 NFRRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRINIDELLEAVGMKHLQKKLPN 368 +R+N +GY++Q+Y L+ L+ +N+ + NL +R++I+EL E + +K + K P Sbjct: 163 TYRKNNLGYVYQRYNLIELLSAYDNIAISQNLIPKYQRRLDIEELAEKLDIKEILYKFPY 222 Query: 369 ELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVIVTH 428 E+SGGQ+QRV+IARA K P L+ DEPTGALD + ++ I + YK T+++VTH Sbjct: 223 EMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYKQTILMVTH 282 Query: 429 NNLIAQLADLVIYVADGKI 447 + + ++A+ +I ++DGKI Sbjct: 283 DVSLTRIANRIIKISDGKI 301 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 90.1 bits (222), Expect = 4e-020, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 114/211 (54%), Gaps = 12/211 (5%) Query: 247 TNAVLKGID---LKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMN 303 TN +K ID + + I+G SGSGK+TL+N +G+ +P+ G + V I Sbjct: 30 TNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVK-DIYIGAK 88 Query: 304 DRQLTNFR--RNYVGYIFQ--QYGLLPNLTVRENVEVG--ANLQRNPDKRINIDELLEAV 357 R++ NF+ R + +FQ +Y L + TV +++ G A Q D R LE + Sbjct: 89 QRKIKNFKKLRKTISIVFQFPEYQLFKD-TVEKDIMFGPVALGQSKYDARQKAAYYLEMM 147 Query: 358 GMKH-LQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIK 416 G+K+ ++ P ELSGGQ++RV+IA A P ++ DEPT LD E + +++ K Sbjct: 148 GLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQLIKTAK 207 Query: 417 QRYKTTMVIVTHNNLIAQLADLVIYVADGKI 447 Q+ +T +I + ++AD+V+ +A GK+ Sbjct: 208 QQQRTVFMITHQMENVLEVADVVLVLAKGKL 238 >ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length = 402 Score = 87.8 bits (216), Expect = 2e-019, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 116/247 (46%), Gaps = 50/247 (20%) Query: 251 LKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGM-DRPSSGSVVVNGQ--EMICMNDRQL 307 ++GIDLK++ + I+G SGSGK+ + I G D + + ++N + ++ + Q Sbjct: 41 VRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFNDNAQTKAKLMNFKNVDITKLKKHQW 100 Query: 308 TNFRRNYVGYIFQQ--YGLLPNLT----VRENVEVGAN---LQRNPD------------- 345 +R YV YI Q + L P +T V+E + V + Q D Sbjct: 101 KYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNKEIDKK 160 Query: 346 -----------------KRINID----ELLEAVGMKHLQKKL---PNELSGGQQQRVSIA 381 K IN++ E+L+ +G+ +K+L P+E SGG +QR+ IA Sbjct: 161 TYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIA 220 Query: 382 RAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVIVTHN-NLIAQLADLVI 440 A A P LI DEPT ALD+ + VL ++ T++ ++HN +LIA D V Sbjct: 221 IAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVY 280 Query: 441 YVADGKI 447 + GKI Sbjct: 281 VMYAGKI 287 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 86.7 bits (213), Expect = 5e-019, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 34/265 (12%) Query: 204 LKNEVKKVTWLNEPRAKKESVTP---DEEHIIELKNVYKYITNGVTTNAVLKGIDLKLKA 260 +KNE++ + L + + K++V DE+++ E++N + + N VL I+L +K Sbjct: 52 IKNEIEILNRLIKIKNTKDNVIKKDFDEKNVFEIRN-FNFWYN--KNKQVLFDINLDIKR 108 Query: 261 HDFIVILGPSGSGKTTLLNIISGMDRPS-----SGSVVVNGQEMIC--MNDRQLTNFRRN 313 + ++G SG GK+T + ++ ++ + +G + G+ + +ND L R Sbjct: 109 NKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGIINDLTL----RT 164 Query: 314 YVGYIFQQYGLLP-NLTVRENVEVGANLQ----RNPDKRINIDELLEAVGMKHLQKKL-- 366 VG +FQ+ L P N ++ EN+ G +N I L+ A ++ L Sbjct: 165 SVGMVFQK--LTPFNFSIFENIAYGIRAHGIHNKNAINEIVRQALISAALWDEVKDNLHR 222 Query: 367 -PNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVI 425 N LSGGQQQR+ IARA A P ++ DEPT ALD T + + L + + K T+VI Sbjct: 223 NANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSI--ELLIQQLKEKFTIVI 280 Query: 426 VTHNNLIAQ---LADLVIYVADGKI 447 VTH+ +AQ + D I+ ADG++ Sbjct: 281 VTHS--MAQTIRITDETIFFADGRV 303 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 84.3 bits (207), Expect = 2e-018, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 10/190 (5%) Query: 262 DFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTNFRRNYVGYIFQQ 321 +++ I+G +GSGK+T+ +++G+ +P +G + + G+ + D ++ RN +G IFQ Sbjct: 35 EYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTV----DFDNVSYLRNNIGIIFQN 90 Query: 322 Y-GLLPNLTVRENVEVGAN---LQRNPDKRINIDELLEAVGMKHLQKKLPNELSGGQQQR 377 +TV +++ G R K I IDE+ K+ P+ LSGGQ+QR Sbjct: 91 PDNQFIGITVEDDIAFGLENKCFSRQKIKAI-IDEVTLQTQTDGFIKQEPHNLSGGQKQR 149 Query: 378 VSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVIVTHNNLIAQLAD 437 V+IA A NP +I DE T LD + + +KQF+ + ++ +TH+ AD Sbjct: 150 VAIASVLALNPAIIIFDESTAMLDPKAKK-TIKQFMVKLAKQGKCVISITHDMEEVTKAD 208 Query: 438 LVIYVADGKI 447 V+ + +GK+ Sbjct: 209 KVLVMNEGKL 218 >ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 623 Score = 75.9 bits (185), Expect = 8e-016, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 22/168 (13%) Query: 251 LKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTNF 310 L+ + K +A+ I+GP+GSGK+ + NII G+ P+ G +++ G+++ ++ L+ Sbjct: 383 LQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSEM 442 Query: 311 RRNYVGYIFQQYGLLPNLTVRENVEVG----------ANLQ-----RNPDKRINIDELLE 355 +G +FQQ L T+ N+++G ++LQ +N K D +E Sbjct: 443 ----IGIVFQQNILFKG-TISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTFIE 497 Query: 356 AV--GMKHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALD 401 H ++L LSGGQ+QRV+IAR P ++ D+ ALD Sbjct: 498 KFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDSMSALD 545 >ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length = 564 Score = 73.6 bits (179), Expect = 4e-015, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 118/224 (52%), Gaps = 24/224 (10%) Query: 239 KYITNGVTTNAVLKGIDLKLKAHDFIV--ILGPSGSGKTTLLNIISGMDRPSSGSVVVNG 296 ++I+ + +D+ L ++ V ILG +G+GK+TL +I+ G+ +P SG + + Sbjct: 9 EHISKSFDNGKIKANVDVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKIFIGE 68 Query: 297 QEMICMNDRQLTNFRRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRIN------- 349 +++ N + + ++ +G + Q + L+ N TV +N+ +G + IN Sbjct: 69 KQV---NFKSSKDAVKHKIGMVHQHFKLIENYTVLDNIILGNESRFGFLPLINRKVSEAK 125 Query: 350 IDELLEAVGM-KHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGAL-DLEMTQI 407 I ++E G+ L++K+ N L+ GQQQRV I + ++ ++ DEPT L DLE Sbjct: 126 IKTIMEKYGIFVDLKQKVSN-LTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLE---- 180 Query: 408 VLKQFLAIKQRYK---TTMVIVTHN-NLIAQLADLVIYVADGKI 447 ++ FL I +K T+V+++H N I Q+AD + GK+ Sbjct: 181 -IQNFLKIIANFKKLGKTIVLISHKLNEIKQVADTATVLRLGKV 223 >ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 357 Score = 73.2 bits (178), Expect = 5e-015, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 8/204 (3%) Query: 250 VLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSV-VVNGQEMICMNDRQLT 308 ++K ++ + VI G SGSGKTTL+ + ++PS G + N +++T Sbjct: 89 IIKCCSGVIEPNKITVIFGESGSGKTTLIKQLGLFEKPSFGYINCANYCYFANQYQQKIT 148 Query: 309 NFRRNYVGYIFQQYG--LLPNLTVRENVEVGANLQRNPDKRIN-IDELLEAVGMKHLQ-K 364 + +GYI Q+ + + E + NL+ K +N + L+ G++++ Sbjct: 149 KNFKQKIGYILQKAEDQFFCDSILEEVLTGAVNLKLCHKKDVNYAKKYLDLCGLENIPLI 208 Query: 365 KLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMV 424 K P ELS GQ++R+++A A + DEPT LD + K +A+KQ T +V Sbjct: 209 KNPIELSDGQKKRLALASVLAMQVKFLILDEPTVGLDQMAISNLSKMLVAMKQT--TRIV 266 Query: 425 IVTHN-NLIAQLADLVIYVADGKI 447 IV+H+ + I + AD +I++ GKI Sbjct: 267 IVSHDVDFIFETADKIIHLHQGKI 290 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 71.6 bits (174), Expect = 2e-014, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 9/111 (8%) Query: 227 DEEHIIELKNVYKYITNGVTTNAVLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDR 286 +E +IE++ + K +G + ++ I L +K +FI ILGPSG GKTTLL +++G + Sbjct: 2 NEHSLIEIEGLNKTFDDGYVS---IRDISLNIKKGEFITILGPSGCGKTTLLRLLAGFED 58 Query: 287 PSSGSVVVNGQEMICMNDRQLTNFRRNYVGYIFQQYGLLPNLTVRENVEVG 337 P+ G + VNG ++ + + +R + +FQ Y L +LTV +N+ G Sbjct: 59 PTYGKIKVNGIDI-----KDMAIHKRPF-ATVFQDYALFSHLTVYKNIAYG 103 Score = 69.3 bits (168), Expect = 7e-014, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 7/120 (5%) Query: 350 IDELLEAVGMKHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVL 409 + +++E VG+K + +LP+ELSGG +QRV++AR+ P ++ DEP ALD ++ + + Sbjct: 328 VSDVIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQ 387 Query: 410 KQFLAIKQRYKTTMVIVTHNNLIA-QLADLVIYVADGKIQALQANPNPKQVED---INWI 465 K+ I ++ T ++VTH+ A L+D ++ + +G I LQ NP + D WI Sbjct: 388 KELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNI--LQVG-NPVDIYDSPKTEWI 444 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 68.6 bits (166), Expect = 1e-013, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 14/105 (13%) Query: 232 IELKNVYKYITNGVTTNAVLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGS 291 IELKN+ V + I+L ++ H + +LGPSG GKTT L +I+G+ +P+SG Sbjct: 8 IELKNIVVDFGESVA----IDNINLSVEKHQLVSLLGPSGCGKTTTLAVIAGLIKPTSGQ 63 Query: 292 VVVNGQEMICM--NDRQLTNFRRNYVGYIFQQYGLLPNLTVRENV 334 V+ NG ++ +R+L G +FQ Y L P++ V EN+ Sbjct: 64 VLFNGYDVTKKPPQERKL--------GLVFQNYALYPHMNVFENI 100 Score = 64.7 bits (156), Expect = 2e-012, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 63/103 (61%), Gaps = 7/103 (6%) Query: 352 ELLEAVGMKHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEM---TQIV 408 E+ + + + K P+++SGGQQQRV+IARA + P L+ DEP LD ++ T+ Sbjct: 350 EVANKLAITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQW 409 Query: 409 LKQFLAIKQRYKTTMVIVTHNNLIA-QLADLVIYVADGKIQAL 450 ++QF +Q + T V VTH+ A ++D+++ ++ GK+Q + Sbjct: 410 IRQF---QQELQITTVFVTHDQEEAMSISDVIVCMSTGKVQQI 449 >ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 589 Score = 66.2 bits (160), Expect = 6e-013, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 107/211 (50%), Gaps = 28/211 (13%) Query: 251 LKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTNF 310 L GI+ +K D + I+GP+G+GK+T++N++ +P G + ++ E+ + + Sbjct: 368 LTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDNFEISDVTKKAW--- 424 Query: 311 RRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRINIDELLEAVGMKHLQK---KLP 367 R + + Q L T++EN+ +G Q D DE++ A + +LP Sbjct: 425 -REKISIVLQDSFLFSG-TIKENIRLGR--QDATD-----DEIIAACKTANAHDFIMRLP 475 Query: 368 -----------NELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIK 416 + LS G++Q ++IARA +N ++ DE T ++D+ +++ ++ + Sbjct: 476 KGYDTYISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDVHSEKLI-QESIGRL 534 Query: 417 QRYKTTMVIVTHNNLIAQLADLVIYVADGKI 447 + KT+ I++H I + A L++ + DGK+ Sbjct: 535 MKNKTSF-IISHRLSIIRDATLIMVINDGKV 564 >ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 245 Score = 64.7 bits (156), Expect = 2e-012, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 14/190 (7%) Query: 250 VLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTN 309 +L+ I K+ A + + +LG SG GK++LLN ++ SG V +G ++++ Sbjct: 21 LLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVYFDG----VASNKKEYK 76 Query: 310 FRRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRI----------NIDELLEAVGM 359 + Y+ Q L+ V E + A + +++ I +L+ V + Sbjct: 77 KLKKQCSYLDQIPNLIDTDYVYEAILRSAKQKLTWLQKLICFEPKWIKDKILAILKEVNL 136 Query: 360 KHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRY 419 + +LS GQ+QRV IA+ F K+P L+ DEPT LD ++ +R Sbjct: 137 NDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDLITDFVKRE 196 Query: 420 KTTMVIVTHN 429 K T+V VTH+ Sbjct: 197 KITLVFVTHD 206 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507821|ref|NP_109770.1| transketolase 1 [Mycoplasma pneumoniae M129] (648 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072728.1| transketolase (tktA) [Mycoplasma genitalium G-37] 924 0.0 >ref|NP_072728.1| transketolase (tktA) [Mycoplasma genitalium G-37] Length = 648 Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/648 (67%), Positives = 507/648 (78%) Query: 1 MKNLFACQHLALSAIQHAKGGHVGMALGASPILYTLWTKHIQFNPNCPKWINRDRLVMSA 60 MK L+A QHL L+AI+HAKGGHVGMA+GASPIL++L+TKH F+P+ PKWINRDR V+SA Sbjct: 1 MKYLYATQHLTLNAIKHAKGGHVGMAIGASPILFSLFTKHFHFDPDQPKWINRDRFVLSA 60 Query: 61 GHGSMALYPILHFAGLITKQEMLHHKYGQVNTSSHPEYAPNNFIDASTGPLGQGLGMAVG 120 GHGSMALY I HFAGLI+KQE+L HK+GQ+NTSSHPEYAPNNFIDASTGPLGQG GMAVG Sbjct: 61 GHGSMALYSIFHFAGLISKQEILQHKHGQINTSSHPEYAPNNFIDASTGPLGQGFGMAVG 120 Query: 121 MALTQRVLAAEFKALSPKLFDHFTYVVVGDGDLQEGVSYEVAHLAGVYQLNKLIVLHDSN 180 M L Q++LA EFK LS KLFDH+TYVVVGDGDLQEGVSYEV+ +AG+Y+LNKLIVLHDSN Sbjct: 121 MVLAQKLLANEFKELSDKLFDHYTYVVVGDGDLQEGVSYEVSQIAGLYKLNKLIVLHDSN 180 Query: 181 RVQMDSVVRDVSLENLQTRFTNMGWNYLETXXXXXXXXXXXXXXXXXXXPTFIEVHTTIA 240 RVQMDS V+ V+ ENL+ RF N+GWNY+ T PTFIEV TTIA Sbjct: 181 RVQMDSEVKKVANENLKVRFENVGWNYIHTDDQLENIDQAIIKAKQSDKPTFIEVRTTIA 240 Query: 241 KNTTLEDQPAGHWFIPTDKDFARFNSNTKTNFTPFEYPQTVYDFFHKQVIARQAKPVQAY 300 KNT LEDQ GHWFIP + DF F T TNF F YP ++Y +F + VI RQ + + Y Sbjct: 241 KNTHLEDQYGGHWFIPNEVDFQLFEKRTNTNFNFFNYPDSIYHWFKQTVIERQKQIKEDY 300 Query: 301 XXXXXXXXXXXXYTKFINWTENDYQALYLNQLDERKVAQANAATRNYLKDFLGQINNSNS 360 + KF NW ++D+QALYLNQLDE+KVA+ ++ATRNYLKDFL QINN NS Sbjct: 301 NNLLISLKDKPLFKKFTNWIDSDFQALYLNQLDEKKVAKKDSATRNYLKDFLNQINNPNS 360 Query: 361 NLYCLNADVARSCNIKLGDDNLHTNPHSRNIQVGIREFGMSTIMNGMALHGGVKVMGGTF 420 NLYCLNADV+RSC IK+GDDNLH NP SRNIQ+GIREF M+TIMNGMALHGG+KVMGGTF Sbjct: 361 NLYCLNADVSRSCFIKIGDDNLHENPCSRNIQIGIREFAMATIMNGMALHGGIKVMGGTF 420 Query: 421 LAFADYSKPAIRLGALMNLPTFYVYTHDSYQVGGDGPTHQPYDQLPMLRAIENVQVWRPC 480 LAFADYSKPAIRLGALMNLP FYVYTHDSYQVGGDGPTHQPYDQLPMLRAIENV V+RPC Sbjct: 421 LAFADYSKPAIRLGALMNLPVFYVYTHDSYQVGGDGPTHQPYDQLPMLRAIENVCVFRPC 480 Query: 481 DEKETAAGVNYGLLSQDQTNVLILTRQALPSLEQSDSVQTLKGGYIISNRKQPDVIVAAS 540 DEKET AG NYGLLSQDQT VL+LTRQ L S++ +DS++TLKGGYI+ +RKQPD+I+AAS Sbjct: 481 DEKETCAGFNYGLLSQDQTTVLVLTRQPLKSIDNTDSLKTLKGGYILLDRKQPDLIIAAS 540 Query: 541 GSEVXXXXXXXXXXXXXXXKTRVVSVPNINMXXXXXXXXXXXXFDPNSVLLTLEASASME 600 GSEV K R++SVPNI + FD NS L+T+EAS+S E Sbjct: 541 GSEVQLAIEFEKVLTKQNVKVRILSVPNITLLLKQDEKYLKSLFDANSSLITIEASSSYE 600 Query: 601 WYALAKYVKKHTHLGAFSFGESNDGQVVYEHKGFNVTNLLKLIKTLKS 648 W+ KYVK H HLGAFSFGES+DG VY+ KGFN+ L+K+ +L++ Sbjct: 601 WFCFKKYVKNHAHLGAFSFGESDDGDKVYQQKGFNLERLMKIFTSLRN 648 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507822|ref|NP_109771.1| only a conserved hypothetical,MG067 homolog, from M. genitalium [Mycoplasma pneumoniae M129] (533 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 577 e-166 ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 289 6e-080 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 271 9e-075 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 577 bits (1486), Expect = e-166, Method: Compositional matrix adjust. Identities = 297/532 (55%), Positives = 370/532 (69%), Gaps = 22/532 (4%) Query: 1 MVKVWKIGFGVFLPTALLFSACSFKDYIPTPSFRKDFSTENNFVKNKVPGKDDIYSKFYD 60 + + WK G +F+P +L S+CSF+ YIPTPS R N++V N VP K++ Y KFYD Sbjct: 2 LYRFWKTGLAIFMPGCILLSSCSFRSYIPTPSLRNTVGNHNSYVNNTVP-KNNFYEKFYD 60 Query: 61 LTFSLNFVNNQAQEFGTGWLIDWKGDENKNLSKNKEGQTASQTRSSSEQTTD-QDANLFT 119 LTF+LNF N + QEFGTGWLIDWKGDE K+L+ ++ + S+ + QD LF Sbjct: 61 LTFALNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKEKQDDKLFI 120 Query: 120 AYIATNLHVADGLKNDQDYAPYNKDGWGQPYPYQQKTQSFLLGKYTKPNVQLVKTNYEKP 179 AYIATNLH+ DGLKND DY PYNKDG G +P+ QKTQSFLLG++ P + KP Sbjct: 121 AYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKIN------SKP 174 Query: 180 EDA--VIEQKLKEDSLLFIQTSTLPKTAYAAIDPVNFSYNPTR-TNGFWTAGKYNV-YNG 235 E+ ++ +LK+D+++FIQTSTLPKTAYA IDP+NF Y+ T +GFWT + + Sbjct: 175 EEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFWTKKQSTANFPR 234 Query: 236 GNSIGNYADFAVIEVPLVLSNPNDAKIYQEWIRPATQAYKYLGDVEGLFAKKGYRSYIQD 295 ++ +YADFAV+EVPL L N NDAKIYQEWIRPA QAYK LGDVE +FAK Y YI + Sbjct: 235 TRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAEYINN 294 Query: 296 FYHLLGYPVTKNTKSEFILGQSQGTVNHMSFSNDESNTTNTITKASLTQQPHKEQSAYVV 355 Y+LLGYPVT N K +FILGQ + FS S +QP ++++ YV Sbjct: 295 TYYLLGYPVTNNNKYQFILGQDE----KWKFSQQTS------VLKHYQKQPLQQRTVYVE 344 Query: 356 RESGLPTLTMNVDKYTGAKGTHLVNVDQITDLSLGDGLIDFGGLSRFILQYHNVNYKQFG 415 R+ GLPTLT N DK T +GT L+NVDQITD +LG+GLI++ GLSRF L YHNV YK FG Sbjct: 345 RDDGLPTLTFNEDKLTHVQGTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNVEYKLFG 404 Query: 416 YGTILWDTNFGGGSSGSAIFNQNKQINSIYFGALVNVTTDRNENVGLGLGQILRAPNTFN 475 YGTIL +TNF GGSSGSA+FN+ KQ+ SIYFG+L+NVTT N NV LGLGQILR NT N Sbjct: 405 YGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRTYNTNN 464 Query: 476 SSHEVPYSYDLIFGDVNTTNFYAQFAKKHNTHMWSKIQSTQNGEIGFHKNSK 527 S H P SYDLIFGD NT FYAQFAK+ TH+W+KIQ++ N I F+K+ K Sbjct: 465 SKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSSISFYKDKK 516 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 289 bits (739), Expect = 6e-080, Method: Compositional matrix adjust. Identities = 201/513 (39%), Positives = 278/513 (54%), Gaps = 87/513 (16%) Query: 22 CSFKDYIPTPSFRKDFSTENNFVKNKVPGKDDIYSKFYDLTFSLNFVNNQAQEFGTGWLI 81 CSF P FR+ F T+ F N +P D Y YDLTFSLNF +N+ +GTGWLI Sbjct: 24 CSF----VRPQFRRGFRTQ--FKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLI 77 Query: 82 DWKGDENKNLSKNKEGQTASQTRSSSEQTTDQDANLFTAYIATNLHVADGLKNDQDYAPY 141 DWKGDEN N KN F Y+ATNLHV D L+N+ DY PY Sbjct: 78 DWKGDEN-NPEKNDP---------------------FKVYLATNLHVIDALRNNNDYEPY 115 Query: 142 NKDGWGQPYPYQQKTQSFLLGKYTKPNVQLVKTNYEKPEDAVIEQKLKEDSLLFIQTSTL 201 NKD Q + ++ T+ F +GKYT P++ + N+ +I + ++ + IQTST+ Sbjct: 116 NKDSNNQAFNSEEITRFFSIGKYTYPSI-FSELNF------IINAR---EAFVSIQTSTI 165 Query: 202 PKTAYAAIDPVNFSYNPTRTNGFWTAGKYNVYNGGNSIGN----YADFAVIEVPLVLSNP 257 PKTAYAA++ V T G+ Y S N YADFAVIE+PL L+N Sbjct: 166 PKTAYAAVNFVE------------TQGEDESYTDSLSTDNKRDIYADFAVIEIPLFLTNH 213 Query: 258 NDAKIYQEWIRPATQAYKYLGDVEGLFAKKGYRSYIQDFYHLLGYPVTKNTKSEFILGQS 317 D +++ E+I+PA + YK LG+ F KK + D +++LGYP+ +++ IL Q Sbjct: 214 RDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQHKNDNFYMLGYPLVESSIDALILNQR 271 Query: 318 QGTVNHMSFSNDESNTTNTITKASLTQQPHKEQSAYVVRESGLPTLTMNVDKYTGAKGTH 377 + N + E T T+TK T +E +PTL N K + G+ Sbjct: 272 RQYNNSYT----EKYTPQTLTKDQRTIDLSRE----------VPTLIQN--KTENSTGSQ 315 Query: 378 LVNVDQITDLSLGDGLIDFGGLSRFILQYHNVNYKQFGYGTILWDTNFGGGSSGSAIFNQ 437 L+ V+Q S +G+I+F L F L YHN +Y+Q+G G L +TNF GSSG+ + N Sbjct: 316 LL-VNQSLS-STSEGIIEFIKLPEFKLNYHNKSYRQYGRGFALQNTNFRPGSSGTLMLNN 373 Query: 438 NKQINSIYFGALVNVTTDRNENVGL----GLGQILRAP---NTFNSSHEVPYS-YDLIFG 489 KQI IYFG L D E+V L G+GQILR P NT N S S YDLIFG Sbjct: 374 QKQIAGIYFGVL-----DFGEDVSLMSNIGVGQILRVPQKNNTRNRSIATNKSNYDLIFG 428 Query: 490 DVNTTNFYAQFAKKHNTHMWSKIQSTQNGEIGF 522 D NTTNFYA+FA+++NTH++ I ++++ ++ + Sbjct: 429 DSNTTNFYAKFARQNNTHLYQMISNSKDTKLKY 461 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 271 bits (694), Expect = 9e-075, Method: Compositional matrix adjust. Identities = 200/568 (35%), Positives = 275/568 (48%), Gaps = 113/568 (19%) Query: 3 KVWKIGFGVFLPTALLFSACSFKDYIPTPSFRKDFSTENN-------------------- 42 K+ +GF + ALL ++CS +P P K+ ST +N Sbjct: 9 KLKSLGFSLISLQALL-ASCSAVSPVPVPIEEKNDSTTDNNATPFKDEQSDQGTEVNQQP 67 Query: 43 ------------FVKNKVPGKDDIYSKFYDLTFSLNFVNNQAQEFGTGWLIDWKGDENKN 90 F + +P + DIY K YDLTF+LNF + +GTGWLIDWKGDEN Sbjct: 68 KVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKGDEN-- 125 Query: 91 LSKNKEGQTASQTRSSSEQTTDQDANLFTAYIATNLHVADGLKNDQDYAPYNKDGWGQPY 150 T Q F AYIATNLHVADGL+N D+ PY+K + + Sbjct: 126 --------------------TTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREF 165 Query: 151 PYQQKTQSFLLGKYTKPNVQLVKTNYEKP-EDAVIEQKLKEDSLLFIQTSTLPKTAYAAI 209 + T F +GKYT KT+ K ++ +EQ+ DSLL IQTS +PKTAY A Sbjct: 166 NEYESTVYFSIGKYTN------KTDITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTAT 219 Query: 210 DPVNFSYNPTRTNGFWTAGKYNVYNGGNSIGN-YADFAVIEVPLVLSNPNDAKIYQEWIR 268 N G NSI YADFAVIE+ L L N D +I+ E+I+ Sbjct: 220 ---------------------NFLKGVNSIKPVYADFAVIELELNLENLRDWQIFNEFIK 258 Query: 269 PATQAYKYLGDVEGLFAKKGYRSYIQDFYHLLGYPVTKNTKSEFILGQSQGTVNHMSFSN 328 PA YK LGD +F K + ++LLGYPV + G Q N + Sbjct: 259 PAINTYKSLGDSTNIFETKDLEQHWNHSHYLLGYPVLER-------GYDQ---NRLLEQK 308 Query: 329 DESNTTNTITKASLTQQPHKEQSAYVVRESGLPTLTMNVDK------YTGAKGTHLVNVD 382 +E T+ + S Q + + V +P +T N K +K T +VD Sbjct: 309 EEFARTHNFNQKS---QLWSKNTYLVSTAKEIPVITKNARKDGQIGSEIFSKKTQDSHVD 365 Query: 383 QITDLSLGDGLIDFGGLSRFILQYHNVNYKQFGYGTILWDTNFGGGSSGSAIFNQNKQIN 442 ++ + G++ F F L+YH+ Y+Q+GYG +L DTN GGSSGSAIFN N++IN Sbjct: 366 KV--IKHEKGIVTFQNFKNFKLKYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQKIN 423 Query: 443 SIYFGALVNVTTDRNENVGLGLGQILRAPNTFNSSHEVPYS--------YDLIFGDVNTT 494 SIYFG L + +G+ Q+LR + ++ + YDLIFGD NT Sbjct: 424 SIYFGVLEVYKNSKTHKDNIGMSQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSNTK 483 Query: 495 NFYAQFAKKHNTHMWSKIQSTQNGEIGF 522 +FYAQFAKKHNTH++ +I+S++ E + Sbjct: 484 SFYAQFAKKHNTHLYDQIKSSEKEEFKY 511 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507823|ref|NP_109772.1| hypothetical protein MPN084 [Mycoplasma pneumoniae M129] (524 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 446 e-127 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 329 5e-092 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 307 2e-085 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 446 bits (1146), Expect = e-127, Method: Compositional matrix adjust. Identities = 243/485 (50%), Positives = 321/485 (66%), Gaps = 48/485 (9%) Query: 21 GCGYVRLK-RANFQTDFTINRIPTQGDVYHDNYDLTFSLNFATSSKDSYGTGWLIDWKGD 79 GC +VR + R F+T F IN IPT D YH NYDLTFSLNFA++ +++YGTGWLIDWKGD Sbjct: 23 GCSFVRPQFRRGFRTQFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGD 82 Query: 80 ENKPSNTDPFLIYLATNLHVVDALRNPQDYEPYNKDSNGQDYGNRDITHFFALGKYTDPG 139 EN P DPF +YLATNLHV+DALRN DYEPYNKDSN Q + + +IT FF++GKYT P Sbjct: 83 ENNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPS 142 Query: 140 L---LGVETKEQSAFISIQTSAIPKTAYTANDFVDYQYDSLTKQWNKKSDQKDQTQEQTV 196 + L + AF+SIQTS IPKTAY A +FV+ Q + + + +D K Sbjct: 143 IFSELNFIINAREAFVSIQTSTIPKTAYAAVNFVETQGEDESYTDSLSTDNK-------- 194 Query: 197 IGQSWSYKPAYADFAVIEVPLFLDNVRDKQVFDYFVKPAIETYKKLGDTAQLFTEQNLKE 256 + YADFAVIE+PLFL N RD QVF+ F+KPAIETYK+LG+++ F ++ L + Sbjct: 195 -------RDIYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQ 245 Query: 257 LEKETYIMLGYPVVESNIYAHILGQGKELRVTQQVNNQPVKKNYVLQTITKEQHTLDITR 316 + + + MLGYP+VES+I A IL Q + Q NN +K Y QT+TK+Q T+D++R Sbjct: 246 HKNDNFYMLGYPLVESSIDALILNQRR------QYNNSYTEK-YTPQTLTKDQRTIDLSR 298 Query: 317 EIPTLIQNKSLSGDFVGSKLLSXXXXXXXHAFLGNLNQGIIDFARLSNFNLQYHNREYQQ 376 E+PTLIQNK+ + GS+LL L + ++GII+F +L F L YHN+ Y+Q Sbjct: 299 EVPTLIQNKTENS--TGSQLLVNQS-------LSSTSEGIIEFIKLPEFKLNYHNKSYRQ 349 Query: 377 YGKGLALANTNFSGGSSGTLVLNQQKQISGVYFGVLEFGGTNGTNRESSIGVGQILRVKD 436 YG+G AL NTNF GSSGTL+LN QKQI+G+YFGVL+FG + S+IGVGQILRV Sbjct: 350 YGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFG--EDVSLMSNIGVGQILRVPQ 407 Query: 437 DAQLQQHSHNNLLSQLGSSHNSITYDIIFGNKDTKNYYAQFAKKHQTHLYSQISSSNQQE 496 + S + N YD+IFG+ +T N+YA+FA+++ THLY IS+S + Sbjct: 408 KNNTRNRS---------IATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDTK 458 Query: 497 LKYVD 501 LKYV+ Sbjct: 459 LKYVN 463 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 329 bits (843), Expect = 5e-092, Method: Compositional matrix adjust. Identities = 195/486 (40%), Positives = 274/486 (56%), Gaps = 50/486 (10%) Query: 25 VRLKRANFQTDFTINRIPTQGDVYHDNYDLTFSLNFATSSKDSYGTGWLIDWKGDENKPS 84 V K N F + IP + D+Y YDLTF+LNF + S DSYGTGWLIDWKGDEN Sbjct: 69 VEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKGDENTTQ 128 Query: 85 NTDPFLIYLATNLHVVDALRNPQDYEPYNKDSNGQDYGNRDITHFFALGKYTDP----GL 140 F Y+ATNLHV D LRN D+ PY+K + +++ + T +F++GKYT+ L Sbjct: 129 KQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTDITKL 188 Query: 141 LGVETKEQ----SAFISIQTSAIPKTAYTANDFVDYQYDSLTKQWNKKSDQKDQTQEQTV 196 E EQ + +SIQTS IPKTAYTA +F+ K N Sbjct: 189 YQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFL--------KGVN-------------- 226 Query: 197 IGQSWSYKPAYADFAVIEVPLFLDNVRDKQVFDYFVKPAIETYKKLGDTAQLFTEQNLKE 256 S KP YADFAVIE+ L L+N+RD Q+F+ F+KPAI TYK LGD+ +F ++L++ Sbjct: 227 -----SIKPVYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQ 281 Query: 257 LEKETYIMLGYPVVESNI-YAHILGQGKELRVTQQVNNQPVKKNYVLQTITKEQHTLDIT 315 ++ +LGYPV+E +L Q +E T N + Q +K + + Sbjct: 282 HWNHSHYLLGYPVLERGYDQNRLLEQKEEFARTHNFNQKS-------QLWSKNTYLVSTA 334 Query: 316 REIPTLIQNKSLSGDFVGSKLLSXXXXXXXHAFLGNLNQGIIDFARLSNFNLQYHNREYQ 375 +EIP + +N G +GS++ S + +GI+ F NF L+YH++EYQ Sbjct: 335 KEIPVITKNARKDGQ-IGSEIFSKKTQDSHVDKVIKHEKGIVTFQNFKNFKLKYHDKEYQ 393 Query: 376 QYGKGLALANTNFSGGSSGTLVLNQQKQISGVYFGVLEFGGTNGTNRESSIGVGQILRVK 435 QYG GL L +TN GGSSG+ + N ++I+ +YFGVLE + T+++ +IG+ Q+LR Sbjct: 394 QYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKD-NIGMSQLLRTS 452 Query: 436 DDAQLQQHSHNNLLSQLGSSHNSITYDIIFGNKDTKNYYAQFAKKHQTHLYSQISSSNQQ 495 ++ S N + YD+IFG+ +TK++YAQFAKKH THLY QI SS ++ Sbjct: 453 -----KRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHLYDQIKSSEKE 507 Query: 496 ELKYVD 501 E KYVD Sbjct: 508 EFKYVD 513 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 307 bits (786), Expect = 2e-085, Method: Compositional matrix adjust. Identities = 200/545 (36%), Positives = 297/545 (54%), Gaps = 94/545 (17%) Query: 1 MLLRSVWYKLGSLLIILPLTGCGYVRLKRANFQT---------------DFTINRIPTQG 45 ML R ++K G L I +P GC + L +F++ + N +P + Sbjct: 1 MLYR--FWKTG-LAIFMP--GC--ILLSSCSFRSYIPTPSLRNTVGNHNSYVNNTVP-KN 52 Query: 46 DVYHDNYDLTFSLNFATSSKDSYGTGWLIDWKGDENKPSNT------------------- 86 + Y YDLTF+LNF +GTGWLIDWKGDE K NT Sbjct: 53 NFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKE 112 Query: 87 ----DPFLIYLATNLHVVDALRNPQDYEPYNKDSNGQDYGNRDITHFFALGKYTDPGL-- 140 F+ Y+ATNLH++D L+N DY+PYNKD NG + T F LG++ +P + Sbjct: 113 KQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKINS 172 Query: 141 ------LGVETK-EQSAFISIQTSAIPKTAYTANDFVDYQYDSLTKQ---WNKKSDQKDQ 190 V+T+ +Q A + IQTS +PKTAY D +++ Y + + W KK + Sbjct: 173 KPEEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFWTKKQSTANF 232 Query: 191 TQEQTVIGQSWSYKPAYADFAVIEVPLFLDNVRDKQVFDYFVKPAIETYKKLGDTAQLFT 250 + +T+ +YADFAV+EVPLFLDN D +++ +++PA++ YK+LGD +F Sbjct: 233 PRTRTL--------KSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFA 284 Query: 251 EQNLKELEKETYIMLGYPVVESNIYAHILGQGKELRVTQQVNNQPVKKNYVLQTITKEQH 310 + E TY +LGYPV +N Y ILGQ ++ + +QQ + V K+Y Q + +Q Sbjct: 285 KTPYAEYINNTYYLLGYPVTNNNKYQFILGQDEKWKFSQQTS---VLKHYQKQPL--QQR 339 Query: 311 TLDITRE--IPTLIQNKSLSGDFVGSKLLSXXXXXXXHAFLGNLNQGIIDFARLSNFNLQ 368 T+ + R+ +PTL N+ G+ L++ NL G+I++A LS F L Sbjct: 340 TVYVERDDGLPTLTFNEDKLTHVQGTDLINVDQITDT-----NLGNGLINYAGLSRFTLS 394 Query: 369 YHNREYQQYGKGLALANTNFSGGSSGTLVLNQQKQISGVYFGVLEFGGTNGTNRESSIGV 428 YHN EY+ +G G L NTNF GGSSG+ V N++KQ++ +YFG L T G NR ++G+ Sbjct: 395 YHNVEYKLFGYGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSL-INVTTGNNRNVNLGL 453 Query: 429 GQILRVKDDAQLQQHSHNNLLSQLGSSHNSI-TYDIIFGNKDTKNYYAQFAKKHQTHLYS 487 GQILR ++ NN S H++ +YD+IFG+K+T +YAQFAK+ QTHL++ Sbjct: 454 GQILRT--------YNTNN------SKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWN 499 Query: 488 QISSS 492 +I +S Sbjct: 500 KIQTS 504 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507824|ref|NP_109773.1| adhesin P1 (group2) homolog [Mycoplasma pneumoniae M129] (440 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507825|ref|NP_109774.1| adhesin P1 (group2) homolog [Mycoplasma pneumoniae M129] (105 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507826|ref|NP_109775.1| adhesin P1 (group2) homolog [Mycoplasma pneumoniae M129] (150 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507827|ref|NP_109776.1| hypothetical protein MPN088 [Mycoplasma pneumoniae M129] (101 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507828|ref|NP_109777.1| hypothetical protein MPN089 [Mycoplasma pneumoniae M129] (335 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507829|ref|NP_109778.1| adhesin P1 (group2) homolog [Mycoplasma pneumoniae M129] (329 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507830|ref|NP_109779.1| hypothetical protein MPN091 [Mycoplasma pneumoniae M129] (138 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507831|ref|NP_109780.1| involved in cytadherence [Mycoplasma pneumoniae M129] (173 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507832|ref|NP_109781.1| involved in cytadherence [Mycoplasma pneumoniae M129] (301 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 315 3e-088 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 315 bits (808), Expect = 3e-088, Method: Compositional matrix adjust. Identities = 160/299 (53%), Positives = 209/299 (69%), Gaps = 11/299 (3%) Query: 1 MGSNAVPSLWYWVV---GEDQESGRATWWAHTELNWGTDKQKQFVENQLGFXXXXXXXXX 57 MG++ +PS+WYWVV ++ S + TW+A+T L+WG DKQKQFVENQLG+ Sbjct: 312 MGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWGEDKQKQFVENQLGYKETTSTNSH 371 Query: 58 XXXXXAQGLTQPAYLIAGLDVVADHLVFAAFKAGAVGYDMSTENSAA---TKDQALAWST 114 ++ TQPAYLI+G+D V D ++F+ FKAG+VGYD S+ +S++ TKDQALAWST Sbjct: 372 NFH--SKSFTQPAYLISGIDSVNDQIIFSGFKAGSVGYDSSSSSSSSSSSTKDQALAWST 429 Query: 115 TAGLDSAGGYKALVENTAGLNGPINGLFTLLDSFAYVTPVSGMKGGSQNNEEVQTKYPVK 174 T LDS GYK LV N GLNGPING F++ D+F++V P SG + ++T YPVK Sbjct: 430 TTSLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFVVPYSGNHTNNGTTGPIKTAYPVK 489 Query: 175 DDSKASAKIASLINASPLNSYGDDGVTVFDALGLNFNFKLNEARLPSRTDQLLVYGIVNE 234 D K++ KI SLINA+PLNSYGD+G+ VFDALGLN+NFK N+ RLPSRTDQ+ VYGIV+ Sbjct: 490 KDQKSTVKINSLINATPLNSYGDEGIGVFDALGLNYNFKSNQERLPSRTDQIFVYGIVSP 549 Query: 235 SELKSARENAQSTSDANSNTKVKWTNTASHYLPVPYYYSANFPEVGNRRRAEQRNGVIT 293 +EL+SA+ +A ST S+TKV W+NT S YLPVPY YS + +R E R +T Sbjct: 550 NELRSAKSSADSTG---SDTKVNWSNTQSRYLPVPYNYSEGIIDADGFKRPENRGASVT 605 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507833|ref|NP_109782.1| hypothetical protein MPN094 [Mycoplasma pneumoniae M129] (140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507834|ref|NP_109783.1| aa_permeases [Mycoplasma pneumoniae M129] (254 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507835|ref|NP_109784.1| aa_permeases [Mycoplasma pneumoniae M129] (264 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507836|ref|NP_109785.1| hypothetical protein MPN097 [Mycoplasma pneumoniae M129] (541 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 449 e-128 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 306 4e-085 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 449 bits (1154), Expect = e-128, Method: Compositional matrix adjust. Identities = 247/537 (45%), Positives = 318/537 (59%), Gaps = 62/537 (11%) Query: 6 GALIFSGFLGLSIVLASCGARGKFDQVDDGKIKXXXXXXXXXXXXXXQKVVEKYNKVKGV 65 G +F GF GL L +C +FDQVDDGKIK + VV+KYN K Sbjct: 10 GVSVF-GFSGL---LMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYNDTKDP 65 Query: 66 NDYPIEITQIAGGYDGGRTDLQTRVSVKDKTSFYNMILNYPDLVSVLARNGMELPFDGVN 125 DYPIEI QIAGGYDGG+ D+QT+VS KDK +FYN+ILNYP++VS L+R+ M L FDGVN Sbjct: 66 GDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALNFDGVN 125 Query: 126 VDKLSPNFLKFNERISGVAKKANYAIPISMSTDILILNAPVLHYILNSAKKNDGNTKVQV 185 VDKL PNFL FN RI G+ YAIPISMSTD++++N PVLHYILNSA+K T V Sbjct: 126 VDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTPTSTTV 185 Query: 186 KAQSKDSQTKVKGTMEIGTDESTKNLWSDIQKKXXXXXXXXXXXXXXXXXXSTHLTLLTK 245 +A + KGT+EI D T LW +IQ S+ + + Sbjct: 186 QATVSSRSAEKKGTLEIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSSSTTST 245 Query: 246 SEQSTQGNNGASESDKKIEETWGTYSEVDGGLKNYTFKADVFDTWHGLIDFSTRVAKSFK 305 + ++ ++SD KI+E WG Y EVDGGLKN+TFKA +F+ W+ +DF+TR+A SF Sbjct: 246 TGETKD----TTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDFATRIANSFP 301 Query: 306 NKVSDISTKKGTDIQGVLGLDSTPNALFTSVFAAGDSNFDNFFYKV--KDGRADFSNFNE 363 KV +I+ K G D+QGVLG+DS+ NAL+ +VFAAG +N+DNFF+ + + G AD+SNF Sbjct: 302 EKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYADYSNFLN 361 Query: 364 NGTSYKNLEKVFNDYKKLTDSNGLFVNKGGSYTSNFQKFHQLXXXXXXXXXXXXXFAGEN 423 +SY+NLE V+ND+ KL +NGLFVN+GGSY+SNF+KFHQL FA +N Sbjct: 362 KDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSGGYSYYFAKDN 421 Query: 424 SKRLKFNDDTFIEYPSFTQEIHAPXXXXXXXXXXXXXNSKDNGNLLGTFTIXXXXXXXXX 483 +KRLKF++ IEYPSFTQ I AP +S+ NLLGTF + Sbjct: 422 AKRLKFSNYA-IEYPSFTQTIQAP------------NSSETESNLLGTFKLSE------- 461 Query: 484 XXXXXXDTQNQGKKAEGTPNQGKKAEGTENQGKTIFLYKTSIPNDKQDGVDAVLIKD 540 K I LYK SIP+ KQ GVDA+LI + Sbjct: 462 --------------------------------KDINLYKGSIPSGKQQGVDAILISN 486 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 306 bits (783), Expect = 4e-085, Method: Compositional matrix adjust. Identities = 198/545 (36%), Positives = 289/545 (53%), Gaps = 75/545 (13%) Query: 1 MQFKYGALIFSGFLGLSIVLASCGARGKFDQVDDGKIKXXXXXXXXXXXXXXQKVVEKYN 60 M+FK L S +++ +C A +FDQVDDGKIK ++ KYN Sbjct: 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLATVTSASASGSLTT-IISKYN 59 Query: 61 KVKGVNDYPIEITQI--AGGYDGGRTDLQTRVSVKDKTSFYNMILNYPDLVSVLARNGME 118 K NDYP+E+ + G Y G+ DLQ ++ KDK +FYN+ NY D+VS+L+R+ ME Sbjct: 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query: 119 LPFDGVNVDKLSPNFLKFNERISGVAKKANYAIPISMSTDILILNAPVLHYILNSAKKND 178 L FD V+ P+FL FN IS V + YA+P ++S ++L+LN PVLHYIL+SAKK D Sbjct: 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKK-D 178 Query: 179 GNTKVQVKAQSKDSQTKVKGTMEIGTDESTKNLWSDIQKKXXXXXXXXXXXXXXXXXXST 238 NT + + S +S KGTM + +D T +LW+ ++ T Sbjct: 179 SNTTLSTHSASNNSN---KGTMVVASDSETSSLWTKLE-------------AAAKMNAQT 222 Query: 239 HLTLLTKSEQSTQGNNGASESDKKIEETWGTYSEVDGGLKNYTFKADVFDTWHGLIDFST 298 + T + KS S +N SD +I++ WG Y EVDGGLKNYTFKA VF+ W L DF+T Sbjct: 223 NETQVLKSNSSE--SNQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLNDFAT 280 Query: 299 RVAKSFKNKVSDISTKKGTDIQGVLGLDSTPNALFTSVFAAGDSNFDNFFYKVKDGRADF 358 R+AKSF +TKKG ++Q V G+ S NAL+T++FA+G ++++NF + +K+ R +F Sbjct: 281 RIAKSFTKL--QTTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRINF 338 Query: 359 SN-FNENGTSYKNLEKVFNDYKKLTDSNGLFVNKG-GSYTSNFQKFHQLXXXXXXXXXXX 416 SN FN++ T+++NL+ +FN +K L D NGL N + +++ KF+QL Sbjct: 339 SNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTARFP 398 Query: 417 XXFAGENSKRLKFNDDTFIEYPSFTQEIHAPXXXXXXXXXXXXXNSKDNGNLLGTFTIXX 476 FA ++ KRL ND T IE +S +N NL+GT ++ Sbjct: 399 YSFASDSVKRLIVNDKT-IE----------NKNNKSVFEVNLSSDSDNNSNLIGTVSL-- 445 Query: 477 XXXXXXXXXXXXXDTQNQGKKAEGTPNQGKKAEGTENQGKTIFLYKTSIPNDKQDGVDAV 536 EN K + LY+ + ++KQ GVDA+ Sbjct: 446 -----------------------------------EN-SKQVSLYEKQVDSNKQIGVDAL 469 Query: 537 LIKDK 541 LIKD+ Sbjct: 470 LIKDE 474 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507837|ref|NP_109786.1| hypothetical protein MPN098 [Mycoplasma pneumoniae M129] (147 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 155 1e-040 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 110 8e-027 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 155 bits (393), Expect = 1e-040, Method: Compositional matrix adjust. Identities = 91/185 (49%), Positives = 112/185 (60%), Gaps = 38/185 (20%) Query: 1 MMTQGPNLIGIHTNTKENEETQKFVNWFLNTSLT-WDNN--------ESKTPAQYFTESA 51 M+TQGPNLIGIH N KEN ET+KFVNWFLN S+T W++N +KT A+YFT+ A Sbjct: 581 MITQGPNLIGIHANEKENIETKKFVNWFLNQSITDWNSNNQQKNSDQTTKTAAEYFTDQA 640 Query: 52 SYILPLKETFTGS--------------------------NNKGQSGKNDGKNSNN---TF 82 SYILPLKE F S NN + K +NN TF Sbjct: 641 SYILPLKEKFNKSSDLELKGSSSSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNTF 700 Query: 83 KAKALELFKEQSENKIVGYSDPSDFRGGKFRESIGSAFNATVNSHVDFNTFVANFRANLG 142 AKALELF++ + N+I+ +SDPSDFR G FR +I S+FNA VNS V FN FV NF +LG Sbjct: 701 TAKALELFQQAANNEIIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLG 760 Query: 143 SGYDK 147 SG+ + Sbjct: 761 SGFRR 765 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 110 bits (274), Expect = 8e-027, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 16/143 (11%) Query: 2 MTQGPNLIGIHTNTKENEETQKFVNWFLNTSLTWDNNESKTPAQYFTESASYILPLKETF 61 + QGP+LIGIH N +E+ ET+KFVNW+LNT + W+ N KTPA+Y + ASY+LP K Sbjct: 569 LVQGPSLIGIHANEREDIETKKFVNWYLNTKVQWEENSIKTPAEYVADKASYLLPFKNRL 628 Query: 62 TGSNNKGQSGKNDGKNSNNTFKAKALELFKEQSENKIVGYSDPSDFRGGKFRESIGSAFN 121 + NS N F A+ F +++ + +++P+DF K R+ + S N Sbjct: 629 NNT------------NSYNEFVKTAVSQFADKN---VTKFAEPADFLSNKVRDGVKSNLN 673 Query: 122 ATVNSH-VDFNTFVANFRANLGS 143 A +N+H +DF++F+ + LGS Sbjct: 674 AAINNHSIDFDSFINDLTDYLGS 696 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507838|ref|NP_109787.1| hypothetical protein MPN099 [Mycoplasma pneumoniae M129] (347 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 149 4e-038 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 149 bits (376), Expect = 4e-038, Method: Compositional matrix adjust. Identities = 87/184 (47%), Positives = 121/184 (65%), Gaps = 22/184 (11%) Query: 1 MLGSIPVLVNRSGSDSNKF-QATDQKWSYTDLQSDQTKLNLSAYGEVNGLLNPALVETY- 58 +LG+IPVL+N+SG +++F + ++QKW T+ NL +GEVNGL N AL+ TY Sbjct: 915 LLGTIPVLINKSGDSNDQFNKDSEQKWDKTETNEG----NLPGFGEVNGLYNAALLHTYG 970 Query: 59 -FGTTRTSSTANQNSTTVPGIGFKIPEQNNDSKATLITPGLAWTPQDVGNLVV-SGTTVS 116 FGT N NST P IGFK + ++ S +TL+ GL WT QDVGNLVV + T+ Sbjct: 971 FFGT-------NTNSTD-PKIGFKA-DSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFG 1021 Query: 117 FQLGGWLVTFTDFVKPRAGYLGLQLSGLNASDSDQRELIWAPRPWAAFRGSWVNRLGRVE 176 FQLGGW +TFTDF++PR GYLG+ LS L + +IWA +PW +F+GS+++ G + Sbjct: 1022 FQLGGWFITFTDFIRPRTGYLGITLSSL-----QDQTIIWADQPWTSFKGSYLDSDGTPK 1076 Query: 177 SVWD 180 S+WD Sbjct: 1077 SLWD 1080 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507839|ref|NP_109788.1| hypothetical protein MPN100 [Mycoplasma pneumoniae M129] (183 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507840|ref|NP_109789.1| hypothetical protein MPN101 [Mycoplasma pneumoniae M129] (428 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 252 6e-069 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 252 bits (643), Expect = 6e-069, Method: Compositional matrix adjust. Identities = 144/365 (39%), Positives = 188/365 (51%), Gaps = 44/365 (12%) Query: 25 TEAALTASTTFALRRYDLAGRALYDLDFSRL-NPQTPTRDQTGQITFNPFGGFGLSGAAP 83 E L FA+RRYD GRALYD++ +++ NP T R G+ F+PF GFGL+G AP Sbjct: 118 VEKYLDGQQNFAIRRYDNNGRALYDINLAKMENPSTVQRGLNGEPIFDPFKGFGLTGNAP 177 Query: 84 QQWNEVKNKVPVEVAQDPSNPYRFAVLLVPRSVVYYEQLQRGLALPNXXXXXXXXXXNTT 143 WNE+K KVPVEV Q P +P + VLLVP+ + Y L + + N T Sbjct: 178 TDWNEIKGKVPVEVVQSPHSPNLYFVLLVPKVALEYHNLNNQVVKESLEVKATQSSFNPT 237 Query: 144 IGAYGLKVKNAEADTAKSNEKLQGDEXXXXXXXXXXXXXXXXXXXXXDTXXXXXXXXXXX 203 L+ + D++K EKL E + Sbjct: 238 ---QRLQKDSPVKDSSKQGEKLS--ETTASSMSSGMATSTRAKALKVEV----------- 281 Query: 204 XSGSQGNSGEQGTEQVELESNDLANAPIKRGEESGQSVQLKAADFXXXXXXXXXXXXXXX 263 E+G++ L ND A P+K SG+ V+L+A Sbjct: 282 ---------ERGSQSDSLLKNDFAKKPLKHKNSSGE-VKLEAE----------------K 315 Query: 264 XXXXXWRPWLATEQIHKDLPKWSASILILYDAPYARNRTAIDRVDHLDPKVMTANYPPSW 323 W+P L T+QI ++ A+++ YDAPY+ N TA VDH+DPK M NYPPSW Sbjct: 316 EFTEAWKPLLTTDQIARE-KGMGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSW 374 Query: 324 RTPKWNHHGLWDWKARDVLLQTTGFFNSRRHPEWFDQGQAVADNTQTGFDTDDTDNKKTR 383 +TPKWNHHG+WD+ AR++LLQTTGFFN RRHPEWFD+GQA ADNT GF DTD+KK Sbjct: 375 KTPKWNHHGIWDYNARNLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTDHKKDG 434 Query: 384 LSKGS 388 K S Sbjct: 435 FKKNS 439 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507841|ref|NP_109790.1| involved in cytadherence [Mycoplasma pneumoniae M129] (272 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 156 2e-040 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 156 bits (395), Expect = 2e-040, Method: Compositional matrix adjust. Identities = 94/225 (41%), Positives = 127/225 (56%), Gaps = 57/225 (25%) Query: 44 FQKYLNTAQALHQMGVIVPELSQGGWQSQTARHSSTRGLQSAGANRGASLAAXXXXXXXX 103 F KYLNT QAL +G++ + QT R Sbjct: 265 FNKYLNTKQALESIGIL--------FDDQTPR---------------------------- 288 Query: 104 XXXDSTSTTLELPNVITQLYHTSTSQLAYLNGQIVVMGSNAVPSLWYWVVD---ERTTSG 160 NVITQLY+ STS+LA N IVVMG++ +PS+WYWVV+ + S Sbjct: 289 -------------NVITQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASN 335 Query: 161 RATWWAKTHLNFGTEVQKNFVENQLGFKSEDNSNTSLTNFKSQGLTQPAYLISGLDVVAD 220 + TW+A T+L++G + QK FVENQLG+K ++N+ NF S+ TQPAYLISG+D V D Sbjct: 336 KPTWFANTNLDWGEDKQKQFVENQLGYKETTSTNSH--NFHSKSFTQPAYLISGIDSVND 393 Query: 221 HLVFAAFKAGAVGYD---MTTDSNASTYNQALTWSTTAGLDSDGG 262 ++F+ FKAG+VGYD ++ S++ST +QAL WSTT LDS G Sbjct: 394 QIIFSGFKAGSVGYDSSSSSSSSSSSTKDQALAWSTTTSLDSKTG 438 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507842|ref|NP_109791.1| hypothetical protein MPN103 [Mycoplasma pneumoniae M129] (172 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507843|ref|NP_109792.1| hypothetical protein MPN104 [Mycoplasma pneumoniae M129] (104 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507844|ref|NP_109793.1| phenylalanyl-tRNA synthetase alpha-subunit [Mycoplasma pneumoniae M129] (341 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072856.1| phenylalanyl-tRNA synthetase, subunit alpha (ph... 457 e-131 >ref|NP_072856.1| phenylalanyl-tRNA synthetase, subunit alpha (pheS) [Mycoplasma genitalium G-37] Length = 341 Score = 457 bits (1176), Expect = e-131, Method: Compositional matrix adjust. Identities = 222/341 (65%), Positives = 257/341 (75%) Query: 1 MIDQSKLIERWKTTFETAQNPTELLAFKNSFRNADLKPLLSQIKETTDIETKRHLGQLYK 60 MIDQ+KLI +WK F A+N T L+ KN+ N+DLKPLL +IK T + K LG+LY+ Sbjct: 1 MIDQNKLITKWKKAFAKAKNLTTLVNLKNTLHNSDLKPLLQKIKTATKLSEKSSLGKLYQ 60 Query: 61 QLESTLQTLHDTQLQVFTQAQSSSVLTHGDVMLLATSFAPGSSNIIYQVIDELVNYFKKF 120 L+ L L + + F S DVML AT F GS+N +YQVID LV YFK F Sbjct: 61 SLDIQLTDLLTSYKKTFEINNQVSQKPSLDVMLPATEFTNGSNNALYQVIDNLVEYFKSF 120 Query: 121 LFTVNYDSELTTIADCFDLLNIPKDHPSRNLTDTFYLDKNRLLRTHCTAATLRAVKETKK 180 LFT+N+DSELT+I+DCFDLLNIPKDH SRN +D+FY+DK LLRTHCTA TL+AV+ +KK Sbjct: 121 LFTINFDSELTSISDCFDLLNIPKDHSSRNESDSFYIDKTSLLRTHCTATTLKAVRTSKK 180 Query: 181 SNNPDIRIASFGAVFRKDDDDATHSHQFNQLDFMWIKKDFSLTNLKWFMQNMINHIFGEN 240 +NNPDIR+ S GAVFR D DDATHSHQF QLDFMWIKK SL NLKWF+ NMI H FGEN Sbjct: 181 TNNPDIRVVSLGAVFRNDSDDATHSHQFTQLDFMWIKKGLSLANLKWFINNMITHFFGEN 240 Query: 241 TSARFRLSHFPFTEPSFEIDIRCWLCQNGCGVCKKTRWIEVLGAGILHPQVMANMGFSDT 300 T RFRLSHFPFTEPSFEIDIRCWLCQNGC +CK+T+WIE+LGAGI+HPQVM NMG DT Sbjct: 241 TFTRFRLSHFPFTEPSFEIDIRCWLCQNGCSICKQTKWIEILGAGIIHPQVMNNMGIGDT 300 Query: 301 DNIRXXXXXXXXERLVMLKHGISDIRDLYDNNFKFLAQFTD 341 +NI ERL MLK+GI DIRD YDNNFKFL QFTD Sbjct: 301 ENITGIAAGIGIERLAMLKYGIDDIRDFYDNNFKFLTQFTD 341 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507845|ref|NP_109794.1| phenylalanyl-tRNA synthetase beta chain [Mycoplasma pneumoniae M129] (805 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072857.1| phenylalanyl-tRNA synthetase, subunit beta (phe... 952 0.0 >ref|NP_072857.1| phenylalanyl-tRNA synthetase, subunit beta (pheT) [Mycoplasma genitalium G-37] Length = 806 Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/806 (57%), Positives = 617/806 (76%), Gaps = 1/806 (0%) Query: 1 MLISKKTLAVLIPEITHVSNNEICEKLQQIGIEVEAIRAFKNPDYLQLGILRAVTPHPHD 60 MLISKKTL VLIP+I SN++I +KL+Q+GIEVE+I+ F +PDYLQL + ++ PHPHD Sbjct: 1 MLISKKTLGVLIPDIFSFSNDQIAQKLEQMGIEVESIKQFNSPDYLQLAKVVSIQPHPHD 60 Query: 61 NHLYVCQVQIDKNKQLNVVTGAVNIVDPNNLNKHVIVAKKGAELLNGLIIKTKNIKGIIS 120 N L++C++QIDKNK +NVV+ A NI +P+N+NK VIVAKKG ELLNGLI+KT+NIKGIIS Sbjct: 61 NKLFICELQIDKNKFINVVSNANNINNPDNINKFVIVAKKGTELLNGLIVKTQNIKGIIS 120 Query: 121 DGMLCSYVDINPFSKHLIADGDDTHAIVLDNINRD-EFGDYLSFLNLDDVVFEVTLPTNR 179 +G+LCSY+DINPFS+ +I + AI++D+++ D ++ YLSFL+LDDV+F+V PTNR Sbjct: 121 EGILCSYIDINPFSRQIIEKTEVADAIIIDHVSNDHDWNQYLSFLSLDDVIFDVKTPTNR 180 Query: 180 SDLQSLIFLAKELAAVLKRPVFLEQKTTMTLREFYRFPLNLRNRAQANFFGGLFLRDVAI 239 +DL SLIFLAKEL +LK FL+QK+++ +F++FPLNL+N+ +AN+FGGLFLR + Sbjct: 181 ADLHSLIFLAKELGVLLKTKTFLKQKSSVVNHDFFKFPLNLKNKLKANYFGGLFLRQINQ 240 Query: 240 TSSPWTTKGLLINQELRPVNCFVDQANMVTVYTGQPIHCHDADKIHGSVELKLATQLETM 299 SSPWT KGLLINQ ++PVN +VD+AN+VTV+T QPIHCHDAD+I G++ELK AT ET Sbjct: 241 HSSPWTVKGLLINQMIKPVNYYVDKANLVTVFTAQPIHCHDADRIVGNIELKQATHNETF 300 Query: 300 LALDNKEYEIKPGDLVVADEQGTIAIVGIIGSKRTMVDNTTNNIFFEVVNYNHERIKQTA 359 + LD+K+YEI+PGD+VV DE+G IA+VGIIGSKRTMV TT NIFFEVVN N E IKQTA Sbjct: 301 VGLDDKQYEIEPGDIVVCDEKGIIALVGIIGSKRTMVQPTTTNIFFEVVNCNSETIKQTA 360 Query: 360 QRLGVANFASRLMSKPISLQATENCLNYLQNNFLNPESIGKISKFSSTIKAPAFNRKIYL 419 +R + NFAS+ M KPISL AT+NCLNYLQN+ L ++IGKIS FSS++K F++K+ + Sbjct: 361 KRFLINNFASKFMVKPISLLATDNCLNYLQNSLLTTDNIGKISHFSSSLKVEPFSKKLTV 420 Query: 420 NFNQLRELIGVTKKQLNDHMIRNYLTSLGFKMENQIARAPAYRQDITVWQDISEELLKIL 479 NF+++R+LIG+ KK+L D I+ L+ LGFK++NQ+ + P+YRQDI WQDISEE++K++ Sbjct: 421 NFHKIRQLIGIEKKELTDQTIKKSLSQLGFKVDNQLLKIPSYRQDINTWQDISEEIVKLI 480 Query: 480 DLNKIKEDEILSSTKLEKHEKLNAYDALQKLRTKLQTLGFHNVITYQLISPERARNFNLF 539 D+NK+K I SS EK N ++AL KLR KLQTLGFHNVITYQL + A+ FNLF Sbjct: 481 DINKLKPIGITSSFNFEKSSYFNTFNALTKLRKKLQTLGFHNVITYQLTDQKSAKTFNLF 540 Query: 540 GLSNLWEIKNPLSNERSVLRVGLIDSLLRVIQKNAAYKNKLGNIFEFSFVKTKDSNQLHI 599 L N IKNP+S SV+RV LIDSLL+V++ N YKN+L NIFEFSF+KT+++++LH+ Sbjct: 541 NLENFITIKNPVSQNHSVMRVSLIDSLLKVLKTNNNYKNELVNIFEFSFIKTQNNSELHL 600 Query: 600 AALWLEKMFGSTYQKDQGVSVDIPAMKGLAQLIISNFGFNCDFEPITEGEYFTKNVGLKL 659 A LW+EK+F S++ QG+S D+ MKGLA+LI++N GF+CDFEP+ + +YF N LK+ Sbjct: 601 AVLWVEKLFTSSFNPMQGISNDVFTMKGLAKLIVANLGFSCDFEPLDDSDYFVNNQSLKI 660 Query: 660 VVFNEQIGYVGLIKDELLAPYDLKGRPVYGLEIXXXXXXXXXXXXXXSYTPISKLQDVFK 719 VVFNEQIG++GLIK+ LL YDL +P+Y LEI +Y SKLQ V K Sbjct: 661 VVFNEQIGFIGLIKESLLNNYDLNNKPIYCLEINLDRMLSSLNRIEKNYLGYSKLQPVCK 720 Query: 720 DITFSFPRDESHFETFVKAIKKLQTIFKWELISVFDTEKDGVPITKYTVRYYLKNFTNTP 779 D+TFSF SHF+ F IK++ I W+LISVF+T ++ ITKYTVRY+LKN N P Sbjct: 721 DLTFSFTNPASHFDQFANMIKRITGIESWKLISVFETMQNNQLITKYTVRYFLKNDANKP 780 Query: 780 LTLEQIKAVETQLKQQCELAKIALDL 805 LT + I+ + LK QCE KI LD+ Sbjct: 781 LTNQTIELITNNLKLQCEKLKIKLDI 806 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507846|ref|NP_109795.1| hypothetical protein MPN107 [Mycoplasma pneumoniae M129] (251 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507847|ref|NP_109796.1| hypothetical protein MPN108 [Mycoplasma pneumoniae M129] (404 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507848|ref|NP_109797.1| C09_orf165 Protein [Mycoplasma pneumoniae M129] (165 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507849|ref|NP_109798.1| hypothetical protein MPN110 [Mycoplasma pneumoniae M129] (718 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507850|ref|NP_109799.1| hypothetical protein MPN111 [Mycoplasma pneumoniae M129] (422 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507851|ref|NP_109800.1| permease [Mycoplasma pneumoniae M129] (130 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507852|ref|NP_109801.1| Similarity to G3P transporters [Mycoplasma pneumoniae M129] (223 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507853|ref|NP_109802.1| Acyltransferase [Mycoplasma pneumoniae M129] (600 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507854|ref|NP_109803.1| translation initiation factor IF3 [Mycoplasma pneumoniae M129] (201 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072858.1| translation initiation factor 3 (infC) [Mycopla... 288 3e-080 >ref|NP_072858.1| translation initiation factor 3 (infC) [Mycoplasma genitalium G-37] Length = 181 Score = 288 bits (737), Expect = 3e-080, Method: Compositional matrix adjust. Identities = 139/183 (75%), Positives = 161/183 (87%), Gaps = 2/183 (1%) Query: 19 LAQNIKQGSRREREQKPLINDKIGFNEFILIDENGSNLGTVRRTDALKMAEEKQLDLVLI 78 +AQN K S++E QKPL+N++I FN+F LIDEN +NLG V+ +ALK+A+EKQLDLVLI Sbjct: 1 MAQNAKHPSKKE--QKPLVNEQIAFNQFTLIDENSTNLGIVKMENALKLAQEKQLDLVLI 58 Query: 79 GSNPAKPIVKLLDFGRYTYDLKRKKRQSKKNQTIIQIKEVVVKPTIAKHDLEFKAKQTTG 138 NP KPIVKLLDFGRYTYDLKRKKRQ+KKNQTIIQ KEVVVKPTIAKHDLEF+AKQ+ Sbjct: 59 APNPTKPIVKLLDFGRYTYDLKRKKRQAKKNQTIIQTKEVVVKPTIAKHDLEFRAKQSKN 118 Query: 139 WAEKGYHVKFVVRAFGRVSTRIELIEKVFNDFYLLVEPAVEVQKPLTASSKTMYSALLVP 198 W EKG+HVKF+VRAFGRVSTRIELIEKVF+DFY LV+ VE+QKPLTASSKTMY+ALLVP Sbjct: 119 WIEKGHHVKFIVRAFGRVSTRIELIEKVFDDFYQLVKDVVEIQKPLTASSKTMYAALLVP 178 Query: 199 RKK 201 K+ Sbjct: 179 LKR 181 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507855|ref|NP_109804.1| ribosomal protein L35 [Mycoplasma pneumoniae M129] (59 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072859.1| ribosomal protein L35 (rpL35) [Mycoplasma genit... 100 4e-024 >ref|NP_072859.1| ribosomal protein L35 (rpL35) [Mycoplasma genitalium G-37] Length = 59 Score = 99.8 bits (247), Expect = 4e-024, Method: Compositional matrix adjust. Identities = 51/59 (86%), Positives = 53/59 (89%) Query: 1 MKVKSAAKKRFKLTKSGQIKRKHAYTSHLAPHKTTKQKRHLRKQGTVSASDFKRIGNLI 59 MK KSAA KRFKLTKSGQIKRKHAYTSHLAPHK+TKQKRHLRKQ TVS S+ KRIG LI Sbjct: 1 MKTKSAAVKRFKLTKSGQIKRKHAYTSHLAPHKSTKQKRHLRKQATVSNSELKRIGILI 59 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507856|ref|NP_109805.1| ribosomal protein L20 [Mycoplasma pneumoniae M129] (127 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072860.1| ribosomal protein L20 (rpL20) [Mycoplasma genit... 187 4e-050 >ref|NP_072860.1| ribosomal protein L20 (rpL20) [Mycoplasma genitalium G-37] Length = 124 Score = 187 bits (474), Expect = 4e-050, Method: Compositional matrix adjust. Identities = 94/123 (76%), Positives = 104/123 (84%), Gaps = 2/123 (1%) Query: 1 MRIKGGKQTRVRRKKWLKQASGSFGTRHASYKVAKQTVIQAAKYAYRDRRNKKRDFRSLW 60 MR+KG TR+RRKKWLKQASGSFGTR AS+K AKQTVIQA+KYAYRDRR KKR+FRSLW Sbjct: 1 MRVKGTNTTRIRRKKWLKQASGSFGTRKASFKAAKQTVIQASKYAYRDRRQKKREFRSLW 60 Query: 61 ILRLNAALREQGMTYSVFINLLKKHNIEINRKVLSELAIKEPSKFNLIVQKVK--SEQPK 118 ILRLNAALR QGMTYSVFIN LKK I INRKVLSELAIKEP+K NLI+ +K + +P Sbjct: 61 ILRLNAALRAQGMTYSVFINELKKAKIVINRKVLSELAIKEPNKLNLIINTIKKPTNKPT 120 Query: 119 AAK 121 AK Sbjct: 121 VAK 123 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507857|ref|NP_109806.1| Similarity with Ribonuclease HII [Mycoplasma pneumoniae M129] (236 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072861.1| hypothetical protein MG199 [Mycoplasma genitali... 130 1e-032 >ref|NP_072861.1| hypothetical protein MG199 [Mycoplasma genitalium G-37] Length = 167 Score = 130 bits (327), Expect = 1e-032, Method: Compositional matrix adjust. Identities = 69/167 (41%), Positives = 100/167 (59%), Gaps = 2/167 (1%) Query: 70 DQVTLSVDAKTYNQLVQSFKNVNVMLTFLHCKVYHQLLQQNKLTAQQCDISIDEFANVKL 129 D T+++D K YN L +S KN N++LT LHC++Y +LL++N+L Q ISID+FAN +L Sbjct: 2 DHHTITLDPKQYNDLTKSLKNTNLLLTNLHCQLYQKLLEKNQLLRQTVTISIDQFANQEL 61 Query: 130 FTQYTQKLTSLQNELKELVIPNHFLIRGESYSKVXXXXXXXXXXXXXXQMEQLSHQYGVQ 189 F Y KLT+ + K +++P+ FLI GE+ S V Q++ L+ + Sbjct: 62 FVNYLNKLTNFTD--KTVLLPDQFLINGETKSLVIAAASILARDSFINQLQLLNQKVNYD 119 Query: 190 FPKGSAHGIVEALHLLKTKRQFHKFAQYSAVCKTTFKNVASFLKQLA 236 PKGS+HGI +AL L +R F + Q+ V K FKNV FL+QL Sbjct: 120 LPKGSSHGIEQALLFLNQQRGFSQIEQFKQVAKLNFKNVTKFLQQLV 166 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507858|ref|NP_109807.1| contains j-domain of DnaJ; and a domain common to cytadherence proteins [Mycoplasma pneumoniae M129] (910 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072862.1| dnaJ-like protein [Mycoplasma genitalium G-37] 289 9e-080 ref|NP_072679.1| heat shock protein (dnaJ) [Mycoplasma genitaliu... 100 1e-022 >ref|NP_072862.1| dnaJ-like protein [Mycoplasma genitalium G-37] Length = 601 Score = 289 bits (739), Expect = 9e-080, Method: Compositional matrix adjust. Identities = 146/300 (48%), Positives = 204/300 (68%), Gaps = 13/300 (4%) Query: 614 TFEAAVDFLK-----EAAKIEAQLPLVPTVPEQIDGTDPSLLTQWDEYLEKTRKLFHKLF 668 T+E VD+L AK + +L + IDGT+P LL Q + ++ +LF KLF Sbjct: 307 TYEQVVDYLNSQATPNLAKTDGEL-------QTIDGTNPLLLEQCKKIKKQAEQLFKKLF 359 Query: 669 LTEQLPFIVKTDQFEIVDPNLDEHNVNLIYTEHVPQICFLNEQLKEIRYTRKLVDPQTQV 728 L +QLPFI + + E + DE+NVNL+Y E VP+I F+N+Q KE++YTR++ D T Sbjct: 360 LKKQLPFITQPEVVEESKTSFDENNVNLVYFEKVPEILFINQQPKEVKYTRQVFDGLTNK 419 Query: 729 TTTESITLEVQLSHKSQTEAIAIFKGFGHDYGSGCGDLKVVLKVIPSVFFQLQADGLHTA 788 TT+E+ITLE+QL + AIFKGFG+D+G GCGDLK+V + I S FFQ+ DGLH+A Sbjct: 420 TTSETITLEIQLLQTPKETVSAIFKGFGNDHGKGCGDLKIVFEKIKSPFFQVNEDGLHSA 479 Query: 789 ALVDPLVAYNGGLIDVFGPVNSFKVDIEGGIANNDLIEFNQLGVLRTKTKRGSLYVHLYY 848 ++DPLVAYNGG+IDVFGP +F+V ++G I N +++F +LG+ +TK ++G L+VHLYY Sbjct: 480 CIIDPLVAYNGGIIDVFGPYTNFQVKVDGEIDINAIMKFEKLGIAKTK-RKGDLFVHLYY 538 Query: 849 SSVAKKGTKTNCQVQQFFDLVHVEYKLLNYNLKQLHNYHSALTAQKKTLDRKSYQCLAVE 908 SSV KK TN QVQQF +L+ EY+LL N+K L + + L KK LD++SYQ L+ E Sbjct: 539 SSVPKKKLTTNPQVQQFLELLQAEYELLQDNIKSLKYFKNNLVIPKKPLDQQSYQYLSQE 598 Score = 226 bits (577), Expect = 6e-061, Method: Compositional matrix adjust. Identities = 128/268 (47%), Positives = 154/268 (57%), Gaps = 57/268 (21%) Query: 1 MAEAKRDYYEVLGLSRDADDNDIKKAFRKLAKKYHPDRNKAPDAAQIFAEINEANDVLSN 60 MAE KRDYYEVLG++ DAD ++IKKAFRKLAKKYHPDRN APDAA+IFAEINEANDVLSN Sbjct: 1 MAEQKRDYYEVLGITPDADQSEIKKAFRKLAKKYHPDRNNAPDAAKIFAEINEANDVLSN 60 Query: 61 PKKRANYDKYGHDGVDNEGGFAFQADVFDSFFEEIEKSGAFDNLSESNXXXXXXXXXXXX 120 PKKRANYDKYG DGVD E F FQADVF SFFEEI KSG F+N + Sbjct: 61 PKKRANYDKYGFDGVDGEPAFNFQADVFQSFFEEIAKSGVFNNQTNPEQKEKKKRYH--- 117 Query: 121 GWFWGKSKQEESTSDTTEYADVDAGLEDYPPQSDYPDDIPDVDARIEEVDQSAYADDIPD 180 WF K KQE+ + V+ I++V Q+ + PD Sbjct: 118 -WFSKKPKQEQPEINLDHV----------------------VEQTIKKVQQNQNQNKDPD 154 Query: 181 VDAGMDWEQNAEVANSASEIIPDVDAGLADEFNTSSAAPQASDWEAMIGNPEYGYFDAAG 240 E ++V + ASDWEA++G+ YGYFD G Sbjct: 155 -------ELRSKVPGEVT----------------------ASDWEALVGDTRYGYFDETG 185 Query: 241 EWNWKGFFDEAGQWVWLE--ETEPSSVS 266 +W+WKG+FDE G+WVW E ++E S VS Sbjct: 186 DWSWKGYFDEQGKWVWNEPVDSETSEVS 213 >ref|NP_072679.1| heat shock protein (dnaJ) [Mycoplasma genitalium G-37] Length = 389 Score = 99.8 bits (247), Expect = 1e-022, Method: Compositional matrix adjust. Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 11/104 (10%) Query: 1 MAEAKRDYYEVLGLSRDADDNDIKKAFRKLAKKYHPDRNKAPDAA------QIFAEINEA 54 MA KRDYYEVLG+S++A DIK+AFRKLA +YHPDR+KA + + F E+NEA Sbjct: 1 MAAGKRDYYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEA 60 Query: 55 NDVLSNPKKRANYDKYGHDGVD----NEGGFAFQADVFDSFFEE 94 +VLS+ +KR YD++GH+G++ +E GF D+F+S F E Sbjct: 61 YEVLSDEEKRKLYDQFGHEGLNASGFHEAGFN-PFDIFNSVFGE 103 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507859|ref|NP_109808.1| heat shock protein GrpE [Mycoplasma pneumoniae M129] (217 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072863.1| heat shock protein (grpE) [Mycoplasma genitaliu... 314 4e-088 >ref|NP_072863.1| heat shock protein (grpE) [Mycoplasma genitalium G-37] Length = 217 Score = 314 bits (805), Expect = 4e-088, Method: Compositional matrix adjust. Identities = 157/215 (73%), Positives = 183/215 (85%) Query: 1 MSENSLTITEILSSIRTLLVKHNKAKVTQIEKELLQAVAELEKKFKQQVQNFNELQQKIP 60 M E S TI E+L++IRTL+VK+NKAKV+ IEKELL V+EL+KKFKQQ+ NFNELQQKIP Sbjct: 1 MCEKSQTIKELLNAIRTLVVKNNKAKVSMIEKELLAFVSELDKKFKQQLNNFNELQQKIP 60 Query: 61 NLQKVNEEFRLKVEKIQEEAQKKIQEKVAELTIKSKEELENAKKYVIEKSIDQPLIIIDQ 120 LQK NEEF LK E++Q EAQ +IQ K+ EL +K+K+ELE AKKY I K++DQPL IIDQ Sbjct: 61 LLQKANEEFALKFERMQREAQNQIQAKLDELNLKNKKELEQAKKYAIAKTLDQPLNIIDQ 120 Query: 121 FEIALSYAQKDPQVKNYTTGFNMVLDAFSRWLEGFGVTKIAIEPGAQFDEKVMAALEVVP 180 FEIALSYAQKDPQVKNYTTGF MVLDAFSRWLE GVTKI IEPG +FDEK+M+ALE+V Sbjct: 121 FEIALSYAQKDPQVKNYTTGFTMVLDAFSRWLEANGVTKIKIEPGMEFDEKIMSALELVD 180 Query: 181 SDQPANTVVKVSKSGYKLHDKVIRFASVVVSQGNK 215 S+ N VV+VSKSGYKL+DKVIRFASV VS+GNK Sbjct: 181 SNLAKNKVVRVSKSGYKLYDKVIRFASVFVSKGNK 215 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507860|ref|NP_109809.1| hypothetical protein MPN121 [Mycoplasma pneumoniae M129] (121 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072864.1| hypothetical protein MG202 [Mycoplasma genitali... 160 3e-042 >ref|NP_072864.1| hypothetical protein MG202 [Mycoplasma genitalium G-37] Length = 122 Score = 160 bits (406), Expect = 3e-042, Method: Compositional matrix adjust. Identities = 79/102 (77%), Positives = 91/102 (89%) Query: 1 MSTNKRRTIQIEITEEHFKDLEKALEALKGTQLPFSTTVEQFVELILSNYVATSNKISNL 60 MS KRRTIQI I+E+H+++L+KALE LKGTQLPFSTTVEQFVELILSNYVATSNKIS+L Sbjct: 1 MSEQKRRTIQIAISEDHYEELQKALELLKGTQLPFSTTVEQFVELILSNYVATSNKISSL 60 Query: 61 AESGFDVASIQQELEKIGSAAGADDALKSFLDELLKTSQKSF 102 A+SGFDVAS+QQELEKIG+ +G DD LK FL ELLKTS+ F Sbjct: 61 AKSGFDVASLQQELEKIGNLSGVDDNLKGFLSELLKTSRNGF 102 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507861|ref|NP_109810.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129] (635 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072865.1| topoisomerase IV subunit B (parE) [Mycoplasma g... 882 0.0 ref|NP_072663.1| DNA gyrase subunit B (gyrB) [Mycoplasma genital... 489 e-140 >ref|NP_072865.1| topoisomerase IV subunit B (parE) [Mycoplasma genitalium G-37] Length = 633 Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/636 (67%), Positives = 506/636 (79%), Gaps = 4/636 (0%) Query: 1 MKNNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAV 60 MK+NYS NIKILKGLDAVKKRPGMYIGSTDS+G HH+LWEIL N VDEVL+G+A I V Sbjct: 1 MKSNYSATNIKILKGLDAVKKRPGMYIGSTDSKGLHHMLWEILANSVDEVLAGYATNITV 60 Query: 61 VLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGAS 120 L N ITVSD+GRGIP+E H DS ISTIDTVFT+LHAGGKFD+ SYK+AGGLHGVGAS Sbjct: 61 TLDLNNTITVSDDGRGIPYEIHQDSNISTIDTVFTFLHAGGKFDDQSYKLAGGLHGVGAS 120 Query: 121 VVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKK 180 VVNALSD L+VTVKR G++Y+SVY+ GGKI QKA IG+ HGT+V+F DPKVFKK Sbjct: 121 VVNALSDHLEVTVKRNGQIYQSVYQAGGKIIQKAKKIGDTT--SHGTTVSFHADPKVFKK 178 Query: 181 IHFDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFTEAGISQYLDELNADSKQIAQ 240 FDS +I++RLKEL+FLF KL+LTF D+ + + VFF+ +G+ Q+LDE+N + + Q Sbjct: 179 AQFDSNIIKSRLKELSFLFAKLKLTFTDQK-TNKTTVFFSTSGLVQFLDEINNTVETLGQ 237 Query: 241 KIFVSGTEDDIELEAVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSVGDVINNYCRK 300 K + G +D IE+E VFQF + E +LSFANSI+T EGGSHE F ++ DVIN+YCRK Sbjct: 238 KTLIKGEKDGIEVEVVFQFNQSDQETILSFANSIKTFEGGSHENGFCLAISDVINSYCRK 297 Query: 301 YNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQKHF 360 YN LKE+DKNF+ SEIR+GLN IIKVNLPEK IAFEGQTKSKLFSKEVK VV +L Q+H+ Sbjct: 298 YNLLKEKDKNFQLSEIRQGLNAIIKVNLPEKNIAFEGQTKSKLFSKEVKNVVYELVQQHY 357 Query: 361 FQFLERNSVDAKLIVEKLFYNXXXXXXXXXXXXXXXNLSNPKAERILFGKLAPAQSKKVA 420 FQFLERN+ DAKLI++KL +LS+P+ E+ILFGKLAP Q+KK + Sbjct: 358 FQFLERNNNDAKLIIDKLLNARKIKEQIKQQRELKKSLSSPQKEKILFGKLAPCQTKKTS 417 Query: 421 ERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVXXXXXXXXXXXXXXLLTLIFCIG 480 E+ELF+VEGDSAGGTAKMGRDR QAILPLRGKVLNV +LTLIFCIG Sbjct: 418 EKELFIVEGDSAGGTAKMGRDRIFQAILPLRGKVLNVEKINNKKEAITNEEILTLIFCIG 477 Query: 481 TGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALPPLYK 540 TGI NF I+D KY KIIIMTDADNDGAHIQILLLTFFYRYM+PLIE GH+YLALPPLYK Sbjct: 478 TGILTNFNIKDLKYGKIIIMTDADNDGAHIQILLLTFFYRYMQPLIELGHVYLALPPLYK 537 Query: 541 FEGRDKKA-RYLWTEQELEQYRAKHSHFNVQRYKGLGEMNADQLWETTMNPMTRKLIQVK 599 E +D+K +YLW++ ELE + K ++F +QRYKGLGEMNADQLW+TTMNP TRKL+QVK Sbjct: 538 LETKDRKTVKYLWSDLELESVKLKLNNFTLQRYKGLGEMNADQLWDTTMNPTTRKLVQVK 597 Query: 600 LDNFIQAEKQINVFMGDKTELRKSWIEANINFSSEN 635 LD+ I AEKQIN+FMG+K++LRK WIEANINFS EN Sbjct: 598 LDDLINAEKQINIFMGEKSDLRKHWIEANINFSVEN 633 >ref|NP_072663.1| DNA gyrase subunit B (gyrB) [Mycoplasma genitalium G-37] Length = 650 Score = 489 bits (1260), Expect = e-140, Method: Compositional matrix adjust. Identities = 269/640 (42%), Positives = 385/640 (60%), Gaps = 20/640 (3%) Query: 3 NNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAVVL 62 N Y ++IK+L+GL+AV+KRPGMYIGST G HH++WEI+DN +DE + GFA+ + + L Sbjct: 8 NIYDSSSIKVLEGLEAVRKRPGMYIGSTGEEGLHHMIWEIVDNSIDEAMGGFASFVKLTL 67 Query: 63 HAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGASVV 122 V D+GRGIP + H + ST++TVFT LHAGGKFDNDSYK++GGLHGVGASVV Sbjct: 68 EDNFVTRVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLHGVGASVV 127 Query: 123 NALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKKIH 182 NALS +V V RQ K Y + +GGK+ GN++ EHGT V F PD V +K Sbjct: 128 NALSSSFKVWVFRQNKKYFLSFSDGGKVIGDLVQEGNSE-KEHGTIVEFVPDFSVMEKSD 186 Query: 183 FDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFT-EAGISQYLDELN--------- 232 + +I +RL++LAFL K +++ FVD + + + G+ +Y+ LN Sbjct: 187 YKQTVIVSRLQQLAFLNKGIRIDFVDNRKQNPQSFSWKYDGGLVEYIHHLNNEKEPLFNE 246 Query: 233 --ADSKQIAQKIFVSGTEDDIELEAVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSV 290 AD K K +++E FQ+ ++ + SF N+I T+EGG+H FR ++ Sbjct: 247 VIADEKTETVKAVNRDENYTVKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNAL 306 Query: 291 GDVINNYCRKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKA 350 +IN + + FLK+ D+ ++ EGL II + P +EGQTK KL + EV+ Sbjct: 307 VKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNP--QYEGQTKKKLGNTEVRP 364 Query: 351 VVQKLTQKHFFQFLERNSVDAKLIVEKLFYNXXXXXXXXXXXXXXXNLSNPKAERILFGK 410 +V + + F +F+ N +A I+ K S P L GK Sbjct: 365 LVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKS-PFDSGSLPGK 423 Query: 411 LAPAQSKKVAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVXXXXXXXXXXXXX 470 LA ++ + EL++VEGDSAGGTAK GRDR+ QAILPLRGK+LNV Sbjct: 424 LADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNV-EKSNFEQIFNNA 482 Query: 471 XLLTLIFCIGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGH 530 + L+ IG GI +F + +Y KI+IMTDAD DGAHI+ LLLTFF+R+M PL+E+G+ Sbjct: 483 EISALVMAIGCGIKPDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGN 542 Query: 531 IYLALPPLYKFEGRDKKARYLWTEQELEQYRAKHSH--FNVQRYKGLGEMNADQLWETTM 588 I++A PPLYK K Y+ T+ +LEQ+++++ + F +QRYKGLGEM+A QLWETTM Sbjct: 543 IFIAQPPLYKV-SYSHKDLYMHTDVQLEQWKSQNPNVKFGLQRYKGLGEMDALQLWETTM 601 Query: 589 NPMTRKLIQVKLDNFIQAEKQINVFMGDKTELRKSWIEAN 628 +P R L++V +++ A+K ++ MGD+ R+ +IE N Sbjct: 602 DPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEKN 641 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507862|ref|NP_109811.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129] (789 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072866.1| topoisomerase IV, subunit A (parC) [Mycoplasma ... 1019 0.0 ref|NP_072664.1| DNA gyrase subunit A (gyrA) [Mycoplasma genital... 355 e-100 >ref|NP_072866.1| topoisomerase IV, subunit A (parC) [Mycoplasma genitalium G-37] Length = 781 Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/787 (63%), Positives = 617/787 (78%), Gaps = 8/787 (1%) Query: 1 MEKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPT 60 M++ L +AIE+VFA SFSKYAKYIIQDRALPDLRDGLKPVQRRILYGM+QMGLKPT Sbjct: 1 MDQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPT 60 Query: 61 SPYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAM 120 +PYKKSARAVGEIMGKYHPHGD+SIYDAI+RMSQ+WKNN TT+SIHGNNGS+DGDNAAAM Sbjct: 61 TPYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAM 120 Query: 121 RYTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYAT 180 RYTE RLS YGFELLKDI+K+LV F+NNFDDSE EP+VLPTLLPNLFING SGIAAGYAT Sbjct: 121 RYTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYAT 180 Query: 181 NIAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKF 240 NIAPHN ELLD L RI+ P+C+LK ILKIVKGPDFPTGG VYFE+ L++IYQ GKGKF Sbjct: 181 NIAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKF 240 Query: 241 VIQAKYETNTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALEXXXXXXXXXXXX 300 +IQAKYE N NQI IT+IPYET+KANIVKQIEE+I DNKLSA+E Sbjct: 241 IIQAKYEVNKNL--NQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIR 298 Query: 301 XXXNHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELI 360 HKDFL A+KIMAFLFKHTQLQVNFNLNNTVIANR P+++GLL+Y D FL F HELI Sbjct: 299 IIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELI 358 Query: 361 INSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAE 420 IN AKY+L LA+KRLEII GLIKA+S+ID+II+LIR A DK DA+ KLID + FT NQAE Sbjct: 359 INKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQAE 418 Query: 421 AIVSLRLYQLTNTDIKVLFAEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQP 480 AIVSLRLYQLTNTDI L EQ ELE+T+ ++E+LIA +ARN+LL+ QF YKKQF+Q Sbjct: 419 AIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKKQFHQQ 478 Query: 481 RRAQIVGLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLAKHLVEFKSEQDQLIFG 540 RR+QI G I ++KV++S+ IE+K G+LI+ G Y KFE QL K +FKSE D +IF Sbjct: 479 RRSQICGFINQKKVEESELIENKTYGVLITKAGNYHKFESNQLLKSTTDFKSESDTIIFA 538 Query: 541 GVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDK 600 + N+D F+VTSLGNII +P+YK N+K K+ L++KKPIL+E E +V G +N Sbjct: 539 QTIANTDQIFIVTSLGNIINIPVYKLAFNSKNKLASLVSKKPILLEYETIVFVGTMNS-- 596 Query: 601 MEQQLLVLTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLV 660 + Q +LVLTS+ GMVKR++L+K +N K +K++ C++LR++D LV+AF+Q + KL+CLV Sbjct: 597 VNQPILVLTSKLGMVKRIDLTK-LNIKPLKATLCISLRDKDHLVSAFLQQ--DDKLICLV 653 Query: 661 SSSNSFATFLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDGGVYNFE 720 S N + F EIP+IS+KG+GVKG+KLK E++++F + + N+ LV+I SDG V N + Sbjct: 654 SDHNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFVVAFEANEPLVMICSDGSVINLK 713 Query: 721 VVELAVASRMSVGKKLIPKTKTPVSCFAANKHSEIIGHRGKNGSDLFTLNELNRLPKSTV 780 EL V SRM+ KKL P K CF+ ++++I +GKNGS L T +ELN++ K+ + Sbjct: 714 QTELVVVSRMATAKKL-PVKKAINYCFSDATNTQLINFQGKNGSKLITTSELNQMSKTAI 772 Query: 781 SQMRLFK 787 SQ R K Sbjct: 773 SQTRFNK 779 >ref|NP_072664.1| DNA gyrase subunit A (gyrA) [Mycoplasma genitalium G-37] Length = 836 Score = 355 bits (911), Expect = e-100, Method: Compositional matrix adjust. Identities = 222/706 (31%), Positives = 372/706 (52%), Gaps = 21/706 (2%) Query: 20 SFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVGEIMGKYHP 79 SF +YA +I RALPD RDGLKPV RR+LYG Y G+ P+KKSAR VG++M K+HP Sbjct: 32 SFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHDRPFKKSARIVGDVMSKFHP 91 Query: 80 HGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMRYTEARLSPYGFELLKDIE 139 HGD +IYD + RM+Q + I HGN GSIDGD AA RYTEARLS ELLKDI+ Sbjct: 92 HGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARLSKLAAELLKDID 151 Query: 140 KQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGELLDGLSYRIE 199 K V F+ N+D E EP+VLP PNL NG+SGIA G +T+I HN+ EL+ GL I+ Sbjct: 152 KDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNLSELIAGLIMLID 211 Query: 200 NPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKFVIQAKYETNTAFGQNQIVI 259 NP C + +L ++KGPDFPTG + + + + + ++TGKG VI++K E ++ +V+ Sbjct: 212 NPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVEIEQLQTRSALVV 271 Query: 260 TEIPYETVKANIVKQIEELISDNKLSALEXXXXXXXXXXXXXXXNHKDFLSADKIMAFLF 319 TEIPY K ++++I EL+ ++S + K + ++ LF Sbjct: 272 TEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGIRLVIEVKRDTVPEVLLNQLF 331 Query: 320 KHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELIINSAKYDLALANKRLEIIK 379 K T+LQV F +N + PV + + + +L ++++ K+ L +R I+ Sbjct: 332 KSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDVLVRKTKFVLNKQQERYHILS 391 Query: 380 GLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAEAIVSLRLYQLTNTDIKVLF 439 GL+ A IDE++ +I+++ + Q+A L K+ QA+A++ +RL L+ ++ L Sbjct: 392 GLLIAALNIDEVVAIIKKSANNQEAINTLNTKFKLDEIQAKAVLDMRLRSLSVLEVNKLQ 451 Query: 440 AEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIEKQKVQDSDF 499 EQKEL+ +I+ ++++A + + ++++ + + QF RR++I+ I +++ D Sbjct: 452 TEQKELKDSIEFCKKVLADQKLQLKIIKEELQKINDQFGDERRSEILYDI-SEEIDDESL 510 Query: 500 IEHKEVGLLISHDGIYFKFEPEQL---------AKHLVEFKSEQ-DQLIFGGVVQNSDYF 549 I+ + V + +S +G + + K L + + QL+ +SD Sbjct: 511 IKVENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCST--HSDLL 568 Query: 550 FMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQLLVLT 609 F T G + + ++ +T + +DE+ + +++ + + Sbjct: 569 FF-TDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDER--ICSLLSVNNYDDGYFFFC 625 Query: 610 SQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSFAT- 668 ++ G+VKR L++ IN ++ + D L + ++T G ++ + S+N F Sbjct: 626 TKNGIVKRTSLNEFINILS-NGKRAISFDDNDTLY-SVIKTHGNDEI--FIGSTNGFVVR 681 Query: 669 FLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDG 714 F ++ ++S GV GI L E V + L+ + +G Sbjct: 682 FHENQLRVLSRTARGVFGISLNKGEFVNGLSTSSNGSLLLSVGQNG 727 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507863|ref|NP_109812.1| protein (hrcA) homolog; similar to Swiss-Prot Accession Number P25499, from B. subtilis [Mycoplasma pneumoniae M129] (351 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072867.1| transcription repressor (hrcA) [Mycoplasma geni... 572 e-165 >ref|NP_072867.1| transcription repressor (hrcA) [Mycoplasma genitalium G-37] Length = 343 Score = 572 bits (1473), Expect = e-165, Method: Compositional matrix adjust. Identities = 274/344 (79%), Positives = 317/344 (92%), Gaps = 3/344 (0%) Query: 1 MKNLTTRQAQILKAIINEYIAYPVPVGSKLLTKKYFKNLSGGTLRNEMAVLEKEGYLKKN 60 MKNLT RQAQILKAIINEYIAY +PVGSKLLTKKYFKNLSGGTLRNEMA LEK+G+LKKN Sbjct: 1 MKNLTPRQAQILKAIINEYIAYAIPVGSKLLTKKYFKNLSGGTLRNEMAALEKKGFLKKN 60 Query: 61 HISSGRIPSQLGYQYYVKLLTKNDDKSNLKTRLRAIILQKHKTIDEIIELGVKFINEMVN 120 HISSGR+PSQ+GYQYYVK+L ++ ++LKTRLR++ILQ+HKTIDE+IELGVKFINE++N Sbjct: 61 HISSGRVPSQIGYQYYVKVLNVSNTTNDLKTRLRSVILQQHKTIDEVIELGVKFINEIIN 120 Query: 121 LPVVLTHFSSDEVLKKIDLIMLDQSCALLLLVSASGNVFKKTISYANQRQFEDIMVCVRI 180 LPVVLT+FSSDEVLKKIDLI+LD+S AL LLVSASG VFKKTISYANQRQFEDI++CVRI Sbjct: 121 LPVVLTNFSSDEVLKKIDLIILDKSFALFLLVSASGKVFKKTISYANQRQFEDIVICVRI 180 Query: 181 FNDRIIDTRFCDIAQHLDVLKEIIRSKVHEYQYVIDEILFKLFNFEEFQQARKQVYGIHY 240 FNDRIIDTRF +I L+VLKEIIR+KVHEYQYVIDEILFKLF+ ++ +A K++YGI Y Sbjct: 181 FNDRIIDTRFSEINNQLEVLKEIIRTKVHEYQYVIDEILFKLFDLDQI-EANKKIYGIQY 239 Query: 241 LAQQPEFANQERLTRILNLLEDTSVWQQMAFMNQNNQTTNITFGDKLGLEGEEVSVASTL 300 LA+QPEFANQE+LT+ILNLLEDTSVWQQMAF+NQ NQ TNI FGD+LG +E+SVASTL Sbjct: 240 LAKQPEFANQEKLTKILNLLEDTSVWQQMAFINQTNQKTNIVFGDQLGF--KEISVASTL 297 Query: 301 INTTNESKHQLAIVGPTRMDYQKVKALLLTLKEEIEEYDKQLHG 344 INTT+E+KHQLAIVGPTRMDYQK+KALL TLKEEIE+YDK++H Sbjct: 298 INTTSEAKHQLAIVGPTRMDYQKIKALLTTLKEEIEKYDKKIHN 341 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507864|ref|NP_109813.1| excinuclease ABC subunit C [Mycoplasma pneumoniae M129] (586 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072868.1| excinuclease ABC subunit C (uvrC) [Mycoplasma g... 699 0.0 >ref|NP_072868.1| excinuclease ABC subunit C (uvrC) [Mycoplasma genitalium G-37] Length = 597 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/558 (60%), Positives = 410/558 (73%), Gaps = 1/558 (0%) Query: 11 KLKNAPHKPGCYLWKDDAGQVLYVGKAKDIFKRVHHYFNPNRSFKTRALVERIADVEYVI 70 KLK AP KPGCYLWKD G+VLYVGKA +IF RVH YF N +KT+ L +I+DV++ I Sbjct: 8 KLKTAPKKPGCYLWKDSNGKVLYVGKASNIFNRVHQYFQKNNPYKTQLLSSQISDVDFFI 67 Query: 71 LKNENDALNLEAKLIKQYKPRFNLVLKENNGYLYFFITASVKPTLELGRRYEFSKNKYFG 130 LK+ENDALNLEAKLI QY+PRFNLVLK+NNGYLYF+IT + KPTLEL R+Y+ K FG Sbjct: 68 LKDENDALNLEAKLINQYQPRFNLVLKQNNGYLYFYITKAKKPTLELARKYQIKTTKCFG 127 Query: 131 PFASSKFRLRDIYDLLLKLFPLRKCAPHERGHPCFYYQLKMCMGQCMGEDTPERYQTTVK 190 PFASSKF+LR+I+DLLLKLFPLRKCAPH++ HPCFY+Q+ +CMGQCM DT E+YQ + Sbjct: 128 PFASSKFKLREIHDLLLKLFPLRKCAPHQKNHPCFYFQMGLCMGQCMQTDTKEKYQQVIS 187 Query: 191 GIEQFFNHGPEQVLNHLQQQEIKASEQQNFEAARHFLDLQKAVLELVNMQQTAFIKAKQS 250 IEQFFN P V+N+L+ E KAS+ Q FE A+ FL LQKAVLEL T IK K S Sbjct: 188 NIEQFFN-DPSVVINYLKAAEKKASDNQEFEKAQQFLTLQKAVLELTKTHHTTIIKQKSS 246 Query: 251 HDFIGYVFEKNVLAITVFAYVDNQLIGKNQQVFELPQDDEKEVESALVTFIYHYYSTNKI 310 HDFIGYVF+ NVLAIT+F Y +L K Q VF L Q D EVESA++TFIYH+Y T + Sbjct: 247 HDFIGYVFQNNVLAITIFCYEKGELTDKEQAVFTLEQTDIVEVESAIITFIYHHYKTTPL 306 Query: 311 PKTLTVXXXXXXXXXXXXXXKINVTQPKNGEQKSILQTVIDNARYALNTKWTGFINNLNR 370 P +TV KI V +PKNG +K ILQTVIDNA++AL TKW F +N ++ Sbjct: 307 PSKITVSLDETNLKLISDSLKIGVFKPKNGNEKLILQTVIDNAKHALATKWLKFTSNYDK 366 Query: 371 AEVHQQLAQLLQVPSIQSLEIIDISFYDKDHVVGAMLRYENGKRMKALSRRYNINIDHKG 430 ++H+ LAQLL I SLEIID+SFYD++HVVG MLR+E+GK++K LSRRYNIN KG Sbjct: 367 TQLHKDLAQLLNTDYIHSLEIIDVSFYDQNHVVGCMLRFEDGKKIKHLSRRYNINSLKKG 426 Query: 431 DTNYMADVVYRRIISSIQTHKQLPLSDLLIVDGGIAQINTVTKVFASFPNVTQPIIIGLA 490 DTN++A +VYRRI+S++QT LP SDLLI+DGG AQI +V +VF+ F NV PIIIGL Sbjct: 427 DTNHIALLVYRRILSAMQTKANLPFSDLLIIDGGKAQIKSVKQVFSLFSNVKPPIIIGLV 486 Query: 491 KNTRHQTDHIVLXXXXXXXXXXXXPLFAYLTTIQEEVDSFAKHNAFKRVSRARFQNPLLQ 550 KN HQTDHI+L PLF YL TIQ EVD FAK +AF ++S + QNPLLQ Sbjct: 487 KNKNHQTDHIMLSDFQVKKIAINSPLFHYLATIQTEVDGFAKRSAFNKLSNHQLQNPLLQ 546 Query: 551 IEGVGRKTVQILLDNFQT 568 I GVG+ T QIL DNFQT Sbjct: 547 IPGVGKITAQILFDNFQT 564 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507865|ref|NP_109814.1| MG207 homolog, from M. genitalium [Mycoplasma pneumoniae M129] (159 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072869.1| hypothetical protein MG207 [Mycoplasma genitali... 214 2e-058 >ref|NP_072869.1| hypothetical protein MG207 [Mycoplasma genitalium G-37] Length = 167 Score = 214 bits (546), Expect = 2e-058, Method: Compositional matrix adjust. Identities = 94/156 (60%), Positives = 125/156 (80%) Query: 1 MTKVLVLSDTHGYNDRWLAVMKLHNPDVVIHAGDHLTTKKFMDQNATFWVAGNHDVVGEE 60 + KVLV++DTHG N RW+ + HNPDV+IHAGDH+TTK+FMDQNATFWVAGN+D +G E Sbjct: 5 LIKVLVIADTHGQNQRWIELKNYHNPDVIIHAGDHMTTKQFMDQNATFWVAGNNDSIGNE 64 Query: 61 IQMFELEGIQFVLMHGHQAPRHDLKQWYKMLVDQAKSYLCDVLIVGHSHIEHYETIDGIQ 120 I++F+L I FVLMHGHQAPR +LK+WY++LV +A+ Y CDVLI GHSHIE+ I+ IQ Sbjct: 65 IEIFQLGQINFVLMHGHQAPRDNLKKWYQLLVLKAQQYPCDVLIFGHSHIEYTNKINMIQ 124 Query: 121 VINPGSLEIPRNPRKLPTYCNLNLSQGRISDLTFHF 156 +INPGSL++PRN P+YC +++ ++DLT H+ Sbjct: 125 LINPGSLQLPRNQTNTPSYCTFIVNKDELTDLTIHY 160 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507866|ref|NP_109815.1| hypothetical protein MPN127 [Mycoplasma pneumoniae M129] (180 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507867|ref|NP_109816.1| hypothetical protein MPN128 [Mycoplasma pneumoniae M129] (149 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507868|ref|NP_109817.1| adhesin P1 (group 2) homolog [Mycoplasma pneumoniae M129] (149 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507869|ref|NP_109818.1| hypothetical protein MPN130 [Mycoplasma pneumoniae M129] (140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507870|ref|NP_109819.1| hypothetical protein MPN131 [Mycoplasma pneumoniae M129] (221 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507871|ref|NP_109820.1| hypothetical protein MPN132 [Mycoplasma pneumoniae M129] (256 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507872|ref|NP_109821.1| putative lipoprotein, MG186 homolog, from M. genitalium [Mycoplasma pneumoniae M129] (301 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072849.1| lipoprotein, putative [Mycoplasma genitalium G-37] 186 2e-049 >ref|NP_072849.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 250 Score = 186 bits (473), Expect = 2e-049, Method: Compositional matrix adjust. Identities = 99/268 (36%), Positives = 142/268 (52%), Gaps = 43/268 (16%) Query: 1 MKGFSCSRPGYLTGLLLLAVAPILTACTRDYTTKNEFQLTTAQQAKLKPATIEYWRDGDT 60 MKGF +P + G L L ++PI TAC + N F + Q A+L+ A + +WRDGDT Sbjct: 1 MKGFL--KPNFSLGALFLTLSPIATACIAEKPVNNRFNFNSEQLARLRKARVNHWRDGDT 58 Query: 61 PEINYASEERRKEAEQXXXXXXXXXXXXXXXXXXXXXXXXXASTQVRSSKHGLRIYGIDT 120 E+++A+ ++ +RIY IDT Sbjct: 59 LEVSFANNHQKP----------------------------------------IRIYAIDT 78 Query: 121 PEKHVSSKGDSTGDEKIEAEKASNYAEKLIPKGSTVWVWSLNTYSYDREVGALFFKSNPK 180 PEK V S + E EA KA+ +A+ LIP GS VW+W LN+YSYDREV A+FFK+NP Sbjct: 79 PEKAVLSIQRKSEIELKEANKATEFAKSLIPIGSEVWIWPLNSYSYDREVAAVFFKTNPL 138 Query: 181 QTFFQSFEVAMVEAGHAIPIAGTGLNLIADPELSADDPLSVIGLQLXXXXXXXXXXXXXX 240 Q F+SF V MV GHA+PIAG + + +L +PL ++G++L Sbjct: 139 QLHFESFAVEMVANGHALPIAGNDFDFVFS-DLDPFNPLKIVGIELANGLNNAFNNRKNI 197 Query: 241 WSHDTDGYRSLTAVYKLRGADISWTRFL 268 +S+ + ++S+T VY+ RG D SWTR+L Sbjct: 198 FSYLENSFQSITMVYQQRGVDQSWTRYL 225 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507873|ref|NP_109822.1| sn-glycerol-3-phosphate transport system permease protein [Mycoplasma pneumoniae M129] (586 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 670 0.0 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 117 2e-028 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/584 (57%), Positives = 417/584 (71%), Gaps = 11/584 (1%) Query: 9 SQSAIEFKNIVVDFGESIAIDNINXXXXXXXXXXXXGPSGCGKTTSLSVIAGLIAPTSGQ 68 ++SAIE KNIVVDFGES+AIDNIN GPSGCGKTT+L+VIAGLI PTSGQ Sbjct: 4 NKSAIELKNIVVDFGESVAIDNINLSVEKHQLVSLLGPSGCGKTTTLAVIAGLIKPTSGQ 63 Query: 69 VLFNGYDVTKKPPQQRKLGLVFQNYALYPHMSVFENIVFPLYSDTSWREAIFEKNTWAQH 128 VLFNGYDVTKKPPQ+RKLGLVFQNYALYPHM+VFENIVFPLYSD SW++A+ EKN+ A H Sbjct: 64 VLFNGYDVTKKPPQERKLGLVFQNYALYPHMNVFENIVFPLYSDNSWKQAVLEKNSVANH 123 Query: 129 DINCLILKANGATSEELAELNRLMQQRIDEPKRMAYQINDLMVSVFQKQSELEANLKLIP 188 +INCL+L +NGA+ +E+ +LN+L I++PK++ YQINDL VSVF+ +EL ANLKLIP Sbjct: 124 EINCLLLTSNGASVQEIDQLNKLFHDSIEKPKQIQYQINDLNVSVFKNLNELTANLKLIP 183 Query: 189 RKKQFAIISLSKETLSQIRDVE----TKAKAALETADSAEVE-----QTIKSELKQKLSE 239 K QFAI +L+K+TL QI ++E TK K +T + VE Q IK + Sbjct: 184 SKHQFAITNLNKQTLKQINELEAEFKTKWKLQKQTPIKSGVEHNAKLQAIKQHFSYEKQR 243 Query: 240 IKANYHDEKANIKAYWWEMLANIKTELKTEKTAIKQTNDYAKLKELKWKIHFEPLNLKKQ 299 +K +Y K +K E L +K + + IKQ++DY KLK+LK I EP LKKQ Sbjct: 244 LKKHYFKTKVELKQTLVENLKLVKKAISEQTKLIKQSSDYTKLKQLKRLIKVEPNQLKKQ 303 Query: 300 YRSYFKQLKAKYSLKDGNLTESELSQIEELQKRIVSLKDFINRTAKEVAEKLEITKILHK 359 Y+ + QL YSLK LT+++L++IE+++ RIVS+K FIN+TA EVA KL ITKIL K Sbjct: 304 YKVFLNQLIKNYSLKTDKLTDTQLNEIEQIKTRIVSIKQFINKTALEVANKLAITKILTK 363 Query: 360 RPANISGGXXXXXXXXXXXXXXPKVLLMDEPLSNLDAKLRVQTRQWIRKFQQDLQITTVF 419 RP ISGG PK+LLMDEPLSNLDAKLRVQTRQWIR+FQQ+LQITTVF Sbjct: 364 RPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQITTVF 423 Query: 420 VTHDQEEAMSISDTIVCMSTGKVQQIGSPSELYLKPANEFVATFLGSPEMNIVNATVKAG 479 VTHDQEEAMSISD IVCMSTGKVQQIG+PSELYLKPANEFVA FLG+PEMNI+ +VK Sbjct: 424 VTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPANEFVARFLGTPEMNIIECSVKNN 483 Query: 480 QLLWNENPLVKTKFDLPDGAIRVGFRYDEVTAPKNDGSPVFSGTLISVENLGKHMVGVVE 539 QL WN + LV F L + VGFRY+++ N S LI++ENLGKH+V + Sbjct: 484 QLFWNNHLLVTESFKLNVEKLLVGFRYEQLVVTTNKSS--LQAKLINIENLGKHLVATIS 541 Query: 540 SNGVQLNVRLELSHQFEVGNAVKFTIKPNGLHFFDPQTTQRVEV 583 L++RLEL+ +VG+++ F IK N LHFFD T QR+E+ Sbjct: 542 LFDTTLSMRLELNSHLKVGDSLNFIIKANNLHFFDIDTKQRIEI 585 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 117 bits (294), Expect = 2e-028, Method: Compositional matrix adjust. Identities = 156/594 (26%), Positives = 266/594 (44%), Gaps = 64/594 (10%) Query: 7 EKSQSAIEFKNIVVDFGESIAIDNINXXXXXXXXXXXXGPSGCGKTTSLSVIAGLIAPTS 66 E S IE N D G ++I +I+ GPSGCGKTT L ++AG PT Sbjct: 3 EHSLIEIEGLNKTFDDG-YVSIRDISLNIKKGEFITILGPSGCGKTTLLRLLAGFEDPTY 61 Query: 67 GQVLFNGYDVTKKPPQQRKLGLVFQNYALYPHMSVFENIVFPLYSD-TSWREAIFE-KNT 124 G++ NG D+ +R P +VF++ + L+S T ++ + K Sbjct: 62 GKIKVNGIDIKDMAIHKR------------PFATVFQD--YALFSHLTVYKNIAYGLKVM 107 Query: 125 WAQHDINCLILKANGATSEELAELNRLMQQRIDEPKRMAYQINDLMVSVFQKQSELEANL 184 W + D I K ++LA + ++++I++ ++ + + Q LE N Sbjct: 108 WTKLD---EIPKLVSDYQKQLALKHLKLERKIEQLQKNNSNAQRIKKLKEKLQKLLEIN- 163 Query: 185 KLIPRKKQFAIISLSKETLSQ---IRDVE--TKAKAALETADSAEVEQTIKSELKQKLSE 239 KQ I +KE L + +++E TK L EVEQ K + + + Sbjct: 164 ------KQKVIEFENKEKLRREDIYKNLEQLTKEWDLLSQKKLKEVEQQ-KQAIDKSFEK 216 Query: 240 IKANYHDEKANIKAYWWEMLANIK-TELKTEKTAIKQTNDYAKLKELKWKIHFEPLNLKK 298 ++ Y K W+ + I+ + + +KT +K K KE K+ E LK+ Sbjct: 217 VENKYK------KDPWFFQHSEIRLKQYQKKKTELKADIKATKNKEQIQKLTKELQTLKQ 270 Query: 299 QYRSY------FKQLKAKYSLKDGNLTESE---LSQIEELQKRIVSLKDFINRTAKEVAE 349 +Y + + +L Y+ KD + E L Q E +KR +S K K+V++ Sbjct: 271 KYANKKAIDKEYDKLVVAYNKKDYWTSYWETYTLQQKEAFEKRYLSRKLTKAEQNKKVSD 330 Query: 350 KLEITKILHKR---PANISGGXXXXXXXXXXXXXXPKVLLMDEPLSNLDAKLRVQTRQWI 406 +E+ + K P +SGG P++LL+DEPLS LDAK+R ++ + Sbjct: 331 VIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQKEL 390 Query: 407 RKFQQDLQITTVFVTHDQEEAMSISDTIVCMSTGKVQQIGSPSELYLKPANEFVATFLGS 466 ++ + +T + VTHDQEEA+ +SD IV M+ G + Q+G+P ++Y P E++A F+G Sbjct: 391 QQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIYDSPKTEWIANFIG- 449 Query: 467 PEMNIVNAT-VKAGQLLWNENPLVKTKFDLPDGAIRVGFRYDEVTAPKN-DGSPVFSGTL 524 + NI T + ++ +++T D VG +Y + P++ D P G Sbjct: 450 -QANIFKGTYLGEKKIQLQSGEIIQTDV---DNNYVVGKQYKILIRPEDFDLVPENKG-F 504 Query: 525 ISVENLGKHMVGVVESNGVQLN----VRLELSHQFEVGNAVKFTIKPNGLHFFD 574 +V + K+ G++ QL V LE ++ +V P +H + Sbjct: 505 FNVRVIDKNYKGLLWKITTQLKDNTIVDLESVNEVDVNKTFGVLFDPIDVHLME 558 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507874|ref|NP_109823.1| sn-glycerol-3-phosphate transport system permease protein [Mycoplasma pneumoniae M129] (329 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072851.1| ABC transporter, permease protein [Mycoplasma g... 421 e-120 >ref|NP_072851.1| ABC transporter, permease protein [Mycoplasma genitalium G-37] Length = 329 Score = 421 bits (1082), Expect = e-120, Method: Compositional matrix adjust. Identities = 209/328 (63%), Positives = 241/328 (73%) Query: 1 MFKWLLKHRSKPTPLELGIFDQKVSFWKXXXXXXXXXXXXXXXXXXXXXXXXQKGFSHNE 60 MFKWLLKH ++P L+LG+ DQ + FWK QKGFS N Sbjct: 1 MFKWLLKHHNQPHSLQLGLLDQPLPFWKPFLLFLPALLTTILFTIIPFFLSLQKGFSANS 60 Query: 61 DIYRVDSQQFGFQTFANLFSESNFILGLRNSFLYSIISLPXXXXXXXXXXXXXXFVYRKL 120 D+Y + SQ F +TF +LFSESNF+LGLRNSFLYS+ISLP FVY+KL Sbjct: 61 DLYDLSSQSFSLRTFQDLFSESNFVLGLRNSFLYSLISLPFSIIIAIVIASAIVFVYKKL 120 Query: 121 ARGFWQTVFFLPYVTSGVAVSIAFIYILDSSSGILNNIFHVNIKWLDSGERDTFNALWGI 180 RGFWQTVFFLPYVTSGVA+SIAF+YI DS+SGILN +F+VN KWLDSG RDTFNALW I Sbjct: 121 LRGFWQTVFFLPYVTSGVAISIAFVYIFDSASGILNTVFNVNTKWLDSGSRDTFNALWAI 180 Query: 181 LIFGIWKNMAFNVLVISTAMLSVDPTLYKVANLDGAKPIRQFFKITLPSIRPXXXXXXXX 240 LIFG+WKN+AFNVL+ISTAMLSV+P LYKVA+LD A P+RQFFKITLPSIRP Sbjct: 181 LIFGVWKNLAFNVLIISTAMLSVNPQLYKVASLDSANPVRQFFKITLPSIRPTLIFLTTL 240 Query: 241 XXXGGMQVFPISLFNGNDSEAVTNGGSTILLYIFQKIRDQNNNFAGAATLVLFILGVCYG 300 GGMQVFP++LF EAV NGG++ILLYIFQ+I+ N N AGAATLVLF+LGVCYG Sbjct: 241 LILGGMQVFPLALFENKPEEAVANGGNSILLYIFQQIQSGNTNLAGAATLVLFVLGVCYG 300 Query: 301 LVLRNGFRLIEWAQWKIKRHYVQTKLNL 328 LVLRNGF LIEW QWKIK+ YVQ +L L Sbjct: 301 LVLRNGFYLIEWLQWKIKQLYVQKQLTL 328 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507875|ref|NP_109824.1| sn-glycerol-3-phosphate transport system permease protein [Mycoplasma pneumoniae M129] (319 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072852.1| ABC transporter, permease protein [Mycoplasma g... 411 e-117 >ref|NP_072852.1| ABC transporter, permease protein [Mycoplasma genitalium G-37] Length = 334 Score = 411 bits (1057), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/319 (64%), Positives = 248/319 (77%), Gaps = 1/319 (0%) Query: 1 MFKQSLIWYNRYVQKRKKGLDLTIKDRSWSNVLLGLIFKTVVLCFFGLMVIFPFYLMLVV 60 MFK +L + + Q + LDL++K RS ++L L+FKT+VL FFGL+VIFPFYLM+VV Sbjct: 17 MFKNNLRFTSWINQHKFYQLDLSLKTRSIKQIVLTLVFKTLVLGFFGLIVIFPFYLMVVV 76 Query: 61 ALTSDEVVLNIREPILKSDGWHFENFRRVLEDGKYLNAIWINSLVTILSIILRLFFTVSM 120 + SDE L+ R PIL D W+F+NF RVL DGKYLNAI +N+LVT+LS++L LFFT+ M Sbjct: 77 SFASDERALDTRTPILWPDSWNFDNFSRVLSDGKYLNAIVVNTLVTVLSVLLTLFFTICM 136 Query: 121 GYAXXXXXXXXXXXXXXXXXAVLILPESALLIGQYRVVVVANWNQPEKPAIILGLTMPFV 180 GY+ +VLILPESALLIGQYR+V+VANWN P P I+LGL MPFV Sbjct: 137 GYSFSLRKWKYKKLVWFFFLSVLILPESALLIGQYRIVIVANWNNPNSPLIVLGLIMPFV 196 Query: 181 ASVFSGFMFRTAFEAIPPRIKESAFVDGCTGLRYFLKIAFPMVRSTTWTVSILTAFAAWN 240 +SVFSGFM+RT+FEAIP ++KESA +DGC G YFLKIA PMV+ST+WTV ILTAF+AWN Sbjct: 197 SSVFSGFMYRTSFEAIPSQLKESALIDGCNGFNYFLKIALPMVKSTSWTVGILTAFSAWN 256 Query: 241 SYLWPLLLLTNRPDLNINLWVLAQGTDGNAGQSDEQIRVLLNLKMAAAILAILPMFIVYF 300 SYLWPLLLL NR DLNINLWVL QG +A SDEQIR LLNLKM+AAILAILPMFI+YF Sbjct: 257 SYLWPLLLLGNRVDLNINLWVLQQGI-LDANSSDEQIRTLLNLKMSAAILAILPMFIIYF 315 Query: 301 LFRKRIMKAVGSRANTIKG 319 LF KRIM A+ +RANTIKG Sbjct: 316 LFHKRIMNAIKNRANTIKG 334 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507876|ref|NP_109825.1| hypothetical protein MPN137 [Mycoplasma pneumoniae M129] (228 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507877|ref|NP_109826.1| hypothetical protein MPN138 [Mycoplasma pneumoniae M129] (166 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507878|ref|NP_109827.1| hypothetical protein MPN139 [Mycoplasma pneumoniae M129] (163 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507879|ref|NP_109828.1| DHH family phosphoesterases [Mycoplasma pneumoniae M129] (324 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072853.1| mgpA protein (mgpA) [Mycoplasma genitalium G-37] 417 e-119 ref|NP_073043.1| hypothetical protein MG371 [Mycoplasma genitali... 118 8e-029 >ref|NP_072853.1| mgpA protein (mgpA) [Mycoplasma genitalium G-37] Length = 361 Score = 417 bits (1073), Expect = e-119, Method: Compositional matrix adjust. Identities = 193/318 (60%), Positives = 252/318 (79%), Gaps = 2/318 (0%) Query: 5 VHRKGSIAEAVSAIQAHDKIVIFHHIRPDGDCLGAQHGLARLIQTNFPHKQVFCVGDPKH 64 V +KGSI EA++AI+ DKIVIFHH+RPDGDCLGAQ GL LI+ NF +K+V CVG+ + Sbjct: 43 VMKKGSITEAINAIKQFDKIVIFHHVRPDGDCLGAQQGLFHLIKANFKNKEVKCVGNNNN 102 Query: 65 NFPWLEMVFTPKEQITPELMQQALAVIVDANYKERIECRDLLDQNQFKAVLRIDHHPNED 124 F ++ M FT QI +++ALA++VDANYK RIE R+LLD+N FKAVLRIDHHPNED Sbjct: 103 LFSFINMTFT--NQIDESFLKEALAIVVDANYKNRIELRELLDKNLFKAVLRIDHHPNED 160 Query: 125 DLNTTHNFVDASYIAAAEQVVDLAVQAKWKLSPPAATALYLGIYTDSNRFLYSNTSWRTL 184 DLNT+ NFV+ SY+A EQ+V++A AKW + P AAT LY+GIYTDSNRFLYSNTS+RTL Sbjct: 161 DLNTSFNFVEESYVACCEQIVEMATVAKWTIPPVAATLLYIGIYTDSNRFLYSNTSYRTL 220 Query: 185 YLGSMLYRAQANIAKIHDELNHTSLKDIQFKQYVFKNFQTFQNVIYFVADKKFQKKLKVT 244 YL ++LY+A+A+I +HD LNHTSL D++FK+YV+ +F+T VIYF+ KK QK+L++T Sbjct: 221 YLAAILYKAKADIRIVHDHLNHTSLADLKFKKYVYNHFKTQGQVIYFICTKKIQKRLRMT 280 Query: 245 PLECARVNILANIEQFHIWLFFIEEGKNHYRVEFRSNGINVREVALKYGGGGHIQASGAV 304 +CARVN+L+NI + IWLFFIE+ N R++ RSNGINVR++A+KYGGGGH ASGA+ Sbjct: 281 ADQCARVNLLSNIADYKIWLFFIEQANNEIRIDLRSNGINVRDIAIKYGGGGHNNASGAI 340 Query: 305 LKSKRDIIRVVQDCQKQI 322 + +K+ I VV DC K+I Sbjct: 341 ITNKKQISDVVSDCVKKI 358 >ref|NP_073043.1| hypothetical protein MG371 [Mycoplasma genitalium G-37] Length = 324 Score = 118 bits (296), Expect = 8e-029, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 142/302 (47%), Gaps = 9/302 (2%) Query: 18 IQAHDKIVIFHHIRPDGDCLGAQHGLARLIQTNFPHKQVFCVGDPKHNFPWLEMVFTPKE 77 ++ DK +F H+ PD D G+ + T F K+ + +G N E+ + Sbjct: 16 VKQFDKFSLFVHVNPDFDAFGSAFAFKTFLNTFFSEKKAYVMGSYNINADGRELFPFEQT 75 Query: 78 QITPELMQQALAVIVDANYKERIECRDLLDQNQFKAVLRIDHHPNEDDLNTTHNFVDASY 137 I + ++++LA+I D + +ER+ + K +RIDHHP + ++D+S+ Sbjct: 76 DINDDFVKESLAIIFDTSNQERVLTQK---HKLAKETVRIDHHPRTEKF-ADMEWIDSSF 131 Query: 138 IAAAEQVVDLAVQAKWKLSPPAATALYLGIYTDSNRFLYSNTSWRTLYLGSMLYRAQANI 197 A AE + L +Q +KL+ A+ LY GI TD+ RF T+ +T L + L N Sbjct: 132 SATAEMIGYLILQMGYKLNDEIASYLYAGIITDTQRFWGPTTTPQTFALTAKLMETGFNR 191 Query: 198 AKIHDELNHTSLKDIQFKQYVFKNFQTFQNVIYFVADKK--FQKKLKVTPLECARVNILA 255 K+HD + L + ++ YV + +N + + KK ++ V+PL V+ L Sbjct: 192 NKVHDAVYLKPLLEHKYFSYVLSKAKITKNGLAYALIKKGAYKHFGVVSPLPM--VHALN 249 Query: 256 NIEQFHIW-LFFIEEGKNHYRVEFRSNGINVREVALKYGGGGHIQASGAVLKSKRDIIRV 314 NI+ IW + E + RS I + A + GGGH A+ VL K +++ Sbjct: 250 NIKGVKIWTTVYFNESIKKWIGSIRSRNIPINNFAQMFNGGGHKYAAAFVLDEKNQFMKL 309 Query: 315 VQ 316 VQ Sbjct: 310 VQ 311 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507880|ref|NP_109829.1| ADP1_MYCPN adhesin P1 [Mycoplasma pneumoniae M129] (1627 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 921 0.0 ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 71 7e-014 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/1191 (44%), Positives = 701/1191 (58%), Gaps = 124/1191 (10%) Query: 1 MHQTKKTALSKSTWIXXXXXXXXXXXXXXVVGHFXXXXXXLKRQ--QFSYTRPDEVALRH 58 MHQ KK L+K +W V G+F + F+Y +P +++++H Sbjct: 1 MHQPKK-RLAKKSW-AFLTAALTLGVITGVGGYFLFNQNKQRSSVSNFAY-QPKQLSVKH 57 Query: 59 TNAINPRLTPWTYRNTSFSSLPLTGENPGAWALVR---DN-SAKGITAGSGSQQTTYDPT 114 A++ LTPWT+ N +FSSL +TGENPG++ LVR DN + +T S Y Sbjct: 58 QQAVDETLTPWTWNNNNFSSLKITGENPGSFGLVRSQNDNLNISSVTKNSSDDNLKY-LN 116 Query: 115 RTEAALTASTTFALRRYDLAGRALYDLDFSKL-NPQTPTRDQTGQITFNPFGGFGLSGAA 173 E L FA+RRYD GRALYD++ +K+ NP T R G+ F+PF GFGL+G A Sbjct: 117 AVEKYLDGQQNFAIRRYDNNGRALYDINLAKMENPSTVQRGLNGEPIFDPFKGFGLTGNA 176 Query: 174 PQQWNEVKNKVPVEVAQDPSNPYRFAVLLVPRSVVYYEXXXXXXXXXXXXTESGQNTSTT 233 P WNE+K KVPVEV Q P +P + VLLVP+ + Y ++ Q S+ Sbjct: 177 PTDWNEIKGKVPVEVVQSPHSPNLYFVLLVPKVALEYHNLNNQVVKESLEVKATQ--SSF 234 Query: 234 GAMFGLKVKNAEADTAKSNEKLQGAEAXXXXXXXXXXXXXXXXXXXXDTXXXXXXXXXXX 293 L+ + D++K EKL A + Sbjct: 235 NPTQRLQKDSPVKDSSKQGEKLSETTASSMSSGMATSTRAKALKVEVE---------RGS 285 Query: 294 XSDSEDNGQLQLEKNDLANAPIKRSEESGQSVQLKAD-DFGTALXXXXXXXXXXXXXXTP 352 SDS L KND A P+K SG+ V+L+A+ +F A Sbjct: 286 QSDS-------LLKNDFAKKPLKHKNSSGE-VKLEAEKEFTEA----------------- 320 Query: 353 WRPWLATEQIHKDLPKWSASILILYDAPYARNRTAIDRVDHLDPKAMTANYPPSWRTPKW 412 W+P L T+QI ++ A+++ YDAPY+ N TA VDH+DPK M NYPPSW+TPKW Sbjct: 321 WKPLLTTDQIARE-KGMGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKTPKW 379 Query: 413 NHHGLWDWKARDVLLQTTGFFNPRRHPEWFDGGQTVADNEKTGFDVDNSENTKQGFQKEA 472 NHHG+WD+ AR++LLQTTGFFNPRRHPEWFD GQ ADN GF V ++++ K GF+K + Sbjct: 380 NHHGIWDYNARNLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTDHKKDGFKKNS 439 Query: 473 DSDKSAPIALPFEAYFANIGNLTWFGQALLVFGGNGHVTKSAHTAPLSIGVFRVRYNATG 532 S+PIALPFEAYFANIGN+ G ++ +FGGNGH TK T PLSIGVFR++Y Sbjct: 440 ----SSPIALPFEAYFANIGNMVAIGNSVFIFGGNGHATKMFTTNPLSIGVFRIKYTDNF 495 Query: 533 TSATVTGWPYALLFSGMVNKQTDGLKDLPFNNNRWFEYVPRMAVAGAKFVGRELVLAGTI 592 + ++VTGWPYA+LF G++N QT+GLKDLP NRWFEYVPRMAV+G K+VG +LVLAGT+ Sbjct: 496 SKSSVTGWPYAVLFGGLINPQTNGLKDLPLGTNRWFEYVPRMAVSGVKWVGNQLVLAGTL 555 Query: 593 TMGDTATVPRLLYDELESNLNLVAQGQGLLREDLQLFTPYGWANRPDLPIGAWXXXXXXX 652 TMGDTATVPRL YD+LE +LNLVAQGQGLLREDLQ+FTPYGWANRPD+P+GAW Sbjct: 556 TMGDTATVPRLKYDQLEKHLNLVAQGQGLLREDLQIFTPYGWANRPDIPVGAWLQDEMGS 615 Query: 653 HNAPYYFHNNPDWQDRPIQNVVDAFIKPWEDKNGKDDAKYIYPYRYSGMWAWQVYNWSNK 712 P+YF NNPD QD + V+A I +++ D K++YPYRYSG++AWQ++NWSNK Sbjct: 616 KFGPHYFLNNPDIQDNVNNDTVEALISSYKN---TDKLKHVYPYRYSGLYAWQLFNWSNK 672 Query: 713 LTDQPLSADFVNENAYQPNSLFAAILNPELLAALPDKVKYGKENEFAANEYERFNQKLTV 772 LT+ PLSA+FVNEN+Y PNSLFAAILN +LL L DK+ YGKENEFA NE +RFNQ L++ Sbjct: 673 LTNTPLSANFVNENSYAPNSLFAAILNEDLLTGLSDKIFYGKENEFAENEADRFNQLLSL 732 Query: 773 APTQGTNWSHFSPTLSRFSTGFNLVGSVLDQVLDYVPWIXXXXXXXXXXXXVDDITAPQX 832 P TNW+ + + RF+TG NL S DQ LD++PWI ++ Sbjct: 733 NPNPNTNWARYLNVVQRFTTGPNLDSSTFDQFLDFLPWIGNGKPFSNSPSPSTSASSSTP 792 Query: 833 XXXXXXXXXXXXXXXXXFLPTFSNIGVGLKANVQATLGGSQT---MITGGSPRRTLDQAN 889 LPTFSNI VG+K+ + L T I SP Sbjct: 793 ------------------LPTFSNINVGVKSMITQHLNKENTRWVFIPNFSP-------- 826 Query: 890 LQLWTGAGWRNDKASSGQSDENHTKFTSATGMDQQGQSGTSAGNPDSLKQDNISKSGDSL 949 +WTGAG+R A+ +N F + + ++ +P+S + ++ SG S Sbjct: 827 -DIWTGAGYRVQSANQ----KNGIPFEQV-----KPSNNSTPFDPNS-DDNKVTPSGGS- 874 Query: 950 TTQDGNAIDQQEATNYTNLPPNLTPTADWPNALSFTNKNNAQRAQLFLRGLLGSIPVLVN 1009 + T Y LP +++PT+DW NAL+FTNKNN QR QL LR LLG+IPVL+N Sbjct: 875 ----------SKPTTYPALPNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLIN 924 Query: 1010 RSGSDSNKF-QATDQKWSYTDLHSDQTKLNLPAYGEVNGLLNPALVETYFXXXXXXXXXX 1068 +SG +++F + ++QKW T+ + NLP +GEVNGL N AL+ TY Sbjct: 925 KSGDSNDQFNKDSEQKWDKTETNEG----NLPGFGEVNGLYNAALLHTY-----GFFGTN 975 Query: 1069 XXXXXXXXXFKIPEQNNDSKATLITPGLAWTPQDVGNLVV-SGTTVSFQLGGWLVTFTDF 1127 FK + ++ S +TL+ GL WT QDVGNLVV + T+ FQLGGW +TFTDF Sbjct: 976 TNSTDPKIGFKA-DSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDF 1034 Query: 1128 VKPRAGYLGLQLTGLDASDATQRALIWAPRPWAAFRGSWVNRLGRVESVWD 1178 ++PR GYLG+ L+ L + +IWA +PW +F+GS+++ G +S+WD Sbjct: 1035 IRPRTGYLGITLSSLQ-----DQTIIWADQPWTSFKGSYLDSDGTPKSLWD 1080 Score = 261 bits (667), Expect = 4e-071, Method: Compositional matrix adjust. Identities = 137/233 (58%), Positives = 173/233 (74%), Gaps = 17/233 (7%) Query: 1364 VGVGRLSESNAAKMNDDVDGIVRTPLAELLDGEGQTADTGPQSVKFKSPDQIDFNRLFTH 1423 +G+G +S KM+ + G+V TPL L++G+G T+D+ + + FK +QIDFNRLFT Sbjct: 1211 IGIG---DSTFTKMDGKLTGVVSTPLVNLINGQGATSDSDTEKISFKPGNQIDFNRLFTL 1267 Query: 1424 PVTDLFDPVTMLVYDQYIPLFIDIPASVNPKMVRLKVLSFDTNEQSLGLRLEFFKPDQDT 1483 PVT+LFDP TM VYDQY+PL +++P+ + +RLKV+S+ Q+LG+RLEF P Sbjct: 1268 PVTELFDPNTMFVYDQYVPLLVNLPSGFDQASIRLKVISYSVENQTLGVRLEFKDPQTQ- 1326 Query: 1484 XXXXXXXXXXXXGDFLPLLTASSQGPQTLFSPFNQWPDYVLPLAITVPIVVIVLSVTLGL 1543 F+P+L ASS GPQT+F PFNQW DYVLPL +TVPIVVI+LSVTLGL Sbjct: 1327 -------------QFIPVLNASSTGPQTVFQPFNQWADYVLPLIVTVPIVVIILSVTLGL 1373 Query: 1544 AIGIPMHKNKQALKAGFALSNQKVDVLTKAVGSVFKEIINRTGISQAPKRLKQ 1596 IGIPMH+NK+AL+AGF LSN+KVDVLTKAVGSVFKEIINRTGIS APK+LKQ Sbjct: 1374 TIGIPMHRNKKALQAGFDLSNKKVDVLTKAVGSVFKEIINRTGISNAPKKLKQ 1426 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 71.2 bits (173), Expect = 7e-014, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 1/88 (1%) Query: 1509 PQTLFSPFNQWPDYVLPLAITVPIVVIVLSVTLGLAIGIPMHKNKQALKAGFALSNQKVD 1568 P +F+ F P +V+P+++ + ++ + + LGL IGIPM++ ++ A F +KVD Sbjct: 926 PSRVFAGFAALPAWVIPVSVGSSVGILFILLVLGLGIGIPMYRVRKLQDASFVNVFKKVD 985 Query: 1569 VLTKAVGSVFKEIINRTG-ISQAPKRLK 1595 LT AVGSV+K+II +TG + +AP LK Sbjct: 986 TLTTAVGSVYKKIITQTGVVKKAPSALK 1013 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507881|ref|NP_109830.1| involved in cytadherence [Mycoplasma pneumoniae M129] (1218 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 826 0.0 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/724 (59%), Positives = 518/724 (71%), Gaps = 16/724 (2%) Query: 467 NVITQLYHTSTAQLAYLNGQIVVMGSDRVPSLWYWVV---GEDQESGKATWWAKTELNWG 523 NVITQLY+ ST++LA N IVVMG+ +PS+WYWVV ++ S K TW+A T L+WG Sbjct: 289 NVITQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWG 348 Query: 524 TDKQKQFVENQLGFXXXXXXXXXXXXXXAQGLTQPAYLIAGLDVVADHLVFAAFKAGAVG 583 DKQKQFVENQLG+ ++ TQPAYLI+G+D V D ++F+ FKAG+VG Sbjct: 349 EDKQKQFVENQLGYKETTSTNSHNFH--SKSFTQPAYLISGIDSVNDQIIFSGFKAGSVG 406 Query: 584 YDMTTDSSAS---TYNQALAWSTTAGLDSDGGYKALVENTAGLNGPINGLFTLLDTFAYV 640 YD ++ SS+S T +QALAWSTT LDS GYK LV N GLNGPING F++ DTF++V Sbjct: 407 YDSSSSSSSSSSSTKDQALAWSTTTSLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFV 466 Query: 641 TPVSGMKGGSQNNEEVQTTYPVKSDQKATAKIASLINASPLNSYGDDGVTVFDALGLNFN 700 P SG + ++T YPVK DQK+T KI SLINA+PLNSYGD+G+ VFDALGLN+N Sbjct: 467 VPYSGNHTNNGTTGPIKTAYPVKKDQKSTVKINSLINATPLNSYGDEGIGVFDALGLNYN 526 Query: 701 FKLNEERLPSRTDQLLVYGIVNESELKSARENAQSTSDDNSNTKVKWTNTASHYLPVPYY 760 FK N+ERLPSRTDQ+ VYGIV+ +EL+SA+ +A ST D TKV W+NT S YLPVPY Sbjct: 527 FKSNQERLPSRTDQIFVYGIVSPNELRSAKSSADSTGSD---TKVNWSNTQSRYLPVPYN 583 Query: 761 YSANFPEAGNRRRAEQRNGVKIST---LESQATDGFANSLLNFGTGLKAGVDPAPVARGH 817 YS +A +R E R G ++T L+S A DGFANS+ NF GLKAG+DP PV G Sbjct: 584 YSEGIIDADGFKRPENR-GASVTTFSGLKSIAPDGFANSIANFSVGLKAGIDPNPVMSGK 642 Query: 818 KPNYSAXXXXXXXXXXXNFNPDTDKLLDSTDKNSEPISFSYTPFGSAESAVDLTTLKDVT 877 K NY A NFNP D LL +TD N PISFS+TPF +AESAVDLTT K+VT Sbjct: 643 KANYGAVVLTRGGVVRLNFNPGNDSLLSTTDNNIAPISFSFTPFTAAESAVDLTTFKEVT 702 Query: 878 YIAESGLWFYTFDNGEKPTYDGKQQQVKNRKGYAVITVSRTGIEFNEDANTTTLSQAPAA 937 Y ESGLW Y FD+ KP++DGKQ V + G++VITVSRTGIE N+D TTTL AP+A Sbjct: 703 YNQESGLWSYIFDSSLKPSHDGKQTPVTDNMGFSVITVSRTGIELNQDQATTTLDVAPSA 762 Query: 938 LAVQNGIASSQDDLTGILPLSDEFSAVITKDQTWTGKVDIYKNTNGLFEKDDQLSENVKR 997 LAVQ+GI S+ LTG+LPLS+EFSAVI KD K+DIYKN NGLFE D QLS +V Sbjct: 763 LAVQSGIQSTTQTLTGVLPLSEEFSAVIAKDSD-QNKIDIYKNNNGLFEIDTQLSNSVAT 821 Query: 998 RDNGLVPIYNEGIVDIWGRVDFAANSVLQARNLTDKTVDEVINNPDILQSFFKFTPAFDN 1057 + GL P Y E VD WG+V+FA NSVLQARNL DKTVDE+IN P+IL SFF+FTPAF++ Sbjct: 822 NNGGLAPSYTENRVDAWGKVEFADNSVLQARNLVDKTVDEIINTPEILNSFFRFTPAFED 881 Query: 1058 QRAMLVGEKTSDTTLTVKPKIEYLDGNFYGEDSKIAGIPLNIDFPSRIFAGFAALPSWVI 1117 Q+A LV K SDT+L+V P+I++LDGNFY +S IAG+PLNI FPSR+FAGFAALP+WVI Sbjct: 882 QKATLVATKQSDTSLSVSPRIQFLDGNFYDLNSTIAGVPLNIGFPSRVFAGFAALPAWVI 941 Query: 1118 PXXXXXXXXXXXXXXXXXXXXXXPMYKVRKLQDSSFVDVFKKVDTLTTAVGSVYKKIITQ 1177 P PMY+VRKLQD+SFV+VFKKVDTLTTAVGSVYKKIITQ Sbjct: 942 PVSVGSSVGILFILLVLGLGIGIPMYRVRKLQDASFVNVFKKVDTLTTAVGSVYKKIITQ 1001 Query: 1178 TSVI 1181 T V+ Sbjct: 1002 TGVV 1005 Score = 146 bits (369), Expect = 1e-036, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 127/246 (51%), Gaps = 46/246 (18%) Query: 51 DVVRAAHLHPSYELVDWKRVGDTKXXXXXXXXXXXXKFQDTTSSDQSNTNQNALSFD-TQ 109 D+V A L SY++ D + + +T K++ + S N +SFD T Sbjct: 53 DLVSLAQLDSSYQIAD-QTIHNTNLFVLFKSRDVKVKYESSGS--------NNISFDSTS 103 Query: 110 ESQKALXXXXXXXXXXXXXXXXXFASYVLIFKAAPRA--TWVFERKIKLALPYVKQESQG 167 + +K SYV+ F + W +K +L +P V + Sbjct: 104 QGEKP--------------------SYVVEFTNSTNIGIKWTMVKKYQLDVPNVSSD--- 140 Query: 168 SGDQGSNGKGSLYKTLQDLLVEQPVTPYTPNAGLARVNGVAQDTVHFGSGQESSWNSQRS 227 + + L++L++EQP+T YT N+ LA+ G Q VH GSGQ + W SQR+ Sbjct: 141 -----------MNQVLKNLILEQPLTKYTLNSSLAKEKGKTQREVHLGSGQANQWTSQRN 189 Query: 228 QKGLKNNPGPKAVTGFKLDKGRAYRKLNESWPVYEPLDSTKEGKGKDESSWKNSEKTTAE 287 Q L NNP P A TGFKL G AYRKL+ESWP+YEP+D TK+GKGKD S W ++E+ A+ Sbjct: 190 QHDLNNNPSPNASTGFKLTTGNAYRKLSESWPIYEPIDGTKQGKGKDSSGWSSTEENEAK 249 Query: 288 NDAPLV 293 NDAP V Sbjct: 250 NDAPSV 255 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507882|ref|NP_109831.1| hypothetical protein MPN143 [Mycoplasma pneumoniae M129] (175 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507883|ref|NP_109832.1| hypothetical protein MPN144 [Mycoplasma pneumoniae M129] (413 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 184 1e-048 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 184 bits (468), Expect = 1e-048, Method: Compositional matrix adjust. Identities = 103/223 (46%), Positives = 141/223 (63%), Gaps = 17/223 (7%) Query: 38 GQQEATNYTNLPPNLTPTADWPNALSFTNKNNAHRAQLFLRGLLGSIPVLVNRSGSDSNK 97 G + T Y LP +++PT+DW NAL+FTNKNN R QL LR LLG+IPVL+N+SG +++ Sbjct: 873 GSSKPTTYPALPNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLINKSGDSNDQ 932 Query: 98 F-QATDQKWSYTDLQSDQTKLNLPAYGEVNGLLNPALVETYFXXXXXXXXXXXXXXXXXX 156 F + ++QKW T+ NLP +GEVNGL N AL+ TY Sbjct: 933 FNKDSEQKWDKTETNEG----NLPGFGEVNGLYNAALLHTY-----GFFGTNTNSTDPKI 983 Query: 157 XFKIPEQNNDSKATLITPGLAWTPQDVGNLVV-SGTSLSFQLGGWLVSFTDFIKPRAGYL 215 FK + ++ S +TL+ GL WT QDVGNLVV + TS FQLGGW ++FTDFI+PR GYL Sbjct: 984 GFKA-DSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYL 1042 Query: 216 GLQLSGLDASDSDQRELIWAKRPWAAFRGSWVNRLGRVESVWD 258 G+ LS L + +IWA +PW +F+GS+++ G +S+WD Sbjct: 1043 GITLSSL-----QDQTIIWADQPWTSFKGSYLDSDGTPKSLWD 1080 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507884|ref|NP_109833.1| hypothetical protein MPN145 [Mycoplasma pneumoniae M129] (179 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507885|ref|NP_109834.1| hypothetical protein MPN146 [Mycoplasma pneumoniae M129] (265 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 271 5e-075 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 248 6e-068 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 271 bits (693), Expect = 5e-075, Method: Compositional matrix adjust. Identities = 144/271 (53%), Positives = 182/271 (67%), Gaps = 10/271 (3%) Query: 1 MLASCGAKGRFDQVDDGKIKLASSLTGKRDV-ILQEVLNKYNSRKAKDDYPIEITKIAGS 59 +L +C +FDQVDDGKIKLASSLT KR L+ V+ KYN K DYPIEI +IAG Sbjct: 19 LLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYNDTKDPGDYPIEIVQIAGG 78 Query: 60 YDGGRSDLQTRLSVKDKTTFYNMILNYSDTISTLGRSNMELPLDSVDVSQFSENFLSFND 119 YDGG+ D+QT++S KDK FYN+ILNY + +STL RS M L D V+V + NFLSFN Sbjct: 79 YDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALNFDGVNVDKLHPNFLSFNS 138 Query: 120 RISGISRKGIYGIPVSMSTDILVINGPVLHYILNSAKKK----DGAVTKKNASNSNGNEG 175 RI GI GIY IP+SMSTD++VINGPVLHYILNSA+K+ V +S S +G Sbjct: 139 RIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTPTSTTVQATVSSRSAEKKG 198 Query: 176 TLTVNNDQQTTELWKKIEEAAKTNG-KTTQEQTKRDAKQSTSLIQLKEGSANTTEGNASE 234 TL + ND +TT+LW+ I+ A+ N +TT+EQ + S+S G T ++ Sbjct: 199 TLEIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSSSTTSTTGETKDT----TK 254 Query: 235 SDKEIKKSWGNYQEVDGGLKGYTFKASVFEN 265 SD +IK+ WG YQEVDGGLK +TFKAS+FEN Sbjct: 255 SDNKIKEFWGEYQEVDGGLKNFTFKASIFEN 285 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 248 bits (632), Expect = 6e-068, Method: Compositional matrix adjust. Identities = 127/265 (47%), Positives = 174/265 (65%), Gaps = 18/265 (6%) Query: 4 SCGAKGRFDQVDDGKIKLASSLTGKRDVILQEVLNKYNSRKAKDDYPIEITKI--AGSYD 61 +C A RFDQVDDGKIKLA+ + L +++KYNS+K +DYP+E+ + GSY Sbjct: 22 ACSAVYRFDQVDDGKIKLATVTSASASGSLTTIISKYNSQKDPNDYPVELVSLDSRGSYS 81 Query: 62 GGRSDLQTRLSVKDKTTFYNMILNYSDTISTLGRSNMELPLDSVDVSQFSENFLSFNDRI 121 G+ DLQ +L KDK FYN+ NYSD +S L RS MEL D+VD S F +FLSFN+ I Sbjct: 82 NGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQMELSFDTVDTSNFDPSFLSFNNNI 141 Query: 122 SGISRKGIYGIPVSMSTDILVINGPVLHYILNSAKKKDGAVTKKNASNSNGNEGTLTVNN 181 S ++ IY +P ++S ++LV+NGPVLHYIL+SAKK +++++N N+GT+ V + Sbjct: 142 SNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDSNTTLSTHSASNNSNKGTMVVAS 201 Query: 182 DQQTTELWKKIEEAAKTNGKTTQEQTKRDAKQSTSLIQLKEGSANTTEGNASE-SDKEIK 240 D +T+ LW K+E AAK N +T + Q + +N++E N ++ SD EIK Sbjct: 202 DSETSSLWTKLEAAAKMNAQTNETQVLK---------------SNSSESNQTQASDTEIK 246 Query: 241 KSWGNYQEVDGGLKGYTFKASVFEN 265 K WG+YQEVDGGLK YTFKASVF N Sbjct: 247 KIWGDYQEVDGGLKNYTFKASVFNN 271 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507886|ref|NP_109835.1| hypothetical protein MPN147 [Mycoplasma pneumoniae M129] (485 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 429 e-122 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 253 3e-069 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 429 bits (1103), Expect = e-122, Method: Compositional matrix adjust. Identities = 249/523 (47%), Positives = 327/523 (62%), Gaps = 86/523 (16%) Query: 2 VDFATRVAKSFKDKVSGIDNKKGTDIQGVLGLDSTPNVLFASVFAAGGGSYDNFFYKVE- 60 +DFATR+A SF +KV I NK G D+QGVLG+DS+ N L+A+VFAAG +YDNFF+ ++ Sbjct: 290 LDFATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDK 349 Query: 61 -NGRADFRNFANKGTSYKNLEKVYNDYKNLIGSNGLFASKDGSYSSNFEKFHQLAFYVGS 119 G AD+ NF NK +SY+NLE VYND+ LI +NGLF ++ GSYSSNFEKFHQLAF V S Sbjct: 350 RTGYADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSS 409 Query: 120 SSGYNYAFADETAKRLKFGDSAIEYPNDTLEIKAPXXXXXXXXXXXXXXXXXXXXTFDIR 179 S GY+Y FA + AKRLKF + AIEYP+ T I+AP TF + Sbjct: 410 SGGYSYYFAKDNAKRLKFSNYAIEYPSFTQTIQAPNSSETESNLLG---------TFKL- 459 Query: 180 XXXXXXXXXXXXXXXXXXDKKTISLYKDSIPKEKTEGTDAILISDNQLINQLQTAAKTSS 239 +K I+LYK SIP K +G DAILIS+ LIN L+ A Sbjct: 460 ------------------SEKDINLYKGSIPSGKQQGVDAILISNPNLINILEQA----- 496 Query: 240 SQNKANTAAITFKQSNKSETDQSTTSQVIGYTTTASLKADKKNIFDVKKLNNEKSERKII 299 KQ N ++ +STT+++IGYTTTA++ D +NIF V KLNNE+ +RKII Sbjct: 497 ------------KQKNTAQGSESTTNKIIGYTTTANVNVDNQNIFSVSKLNNEQFQRKII 544 Query: 300 VGATVETLNQANTLQANEAIIKPAPGKYQSTDSHKVMITQGPNIVGIHANEKEDKETQKF 359 V AT ETL+Q+ TLQ+NE+I+ P PGKY+STD +KVMITQGPN++GIHANEKE+ ET+KF Sbjct: 545 VNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIGIHANEKENIETKKF 604 Query: 360 INWYLNKEES-WSVQN---SGSTTTKKQTAAQYFAEQSSYITPLKNNFK----------- 404 +NW+LN+ + W+ N + TTK TAA+YF +Q+SYI PLK F Sbjct: 605 VNWFLNQSITDWNSNNQQKNSDQTTK--TAAEYFTDQASYILPLKEKFNKSSDLELKGSS 662 Query: 405 ----------------------ADQSATKDSTVNTNYFTKQTFDLFKEVNDGKVLGFNDP 442 A A K + N+N FT + +LF++ + +++ F+DP Sbjct: 663 SSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNTFTAKALELFQQAANNEIIPFSDP 722 Query: 443 SDFRSGKFRNTIGSTFNATISSKVDFNKFFENFKASLGSGFER 485 SDFR+G FRN I S+FNA ++SKV FN+F +NF SLGSGF R Sbjct: 723 SDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLGSGFRR 765 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 253 bits (646), Expect = 3e-069, Method: Compositional matrix adjust. Identities = 171/482 (35%), Positives = 258/482 (53%), Gaps = 65/482 (13%) Query: 3 DFATRVAKSFKDKVSGIDNKKGTDIQGVLGLDSTPNVLFASVFAAGGGSYDNFFYKVENG 62 DFATR+AKSF + KKG ++Q V G+ S N L+ ++FA+G Y+NF + ++N Sbjct: 277 DFATRIAKSFTKLQTT--TKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQ 334 Query: 63 RADFRNFANKG-TSYKNLEKVYNDYKNLIGSNGLFASKDGSYSSN-FEKFHQLAFYVGSS 120 R +F NF NK T+++NL+ ++N +K+LI NGL ++ + N + KF+QLAFY S+ Sbjct: 335 RINFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSST 394 Query: 121 SGYNYAFADETAKRLKFGDSAIEYPNDTLEIKAPXXXXXXXXXXXXXXXXXXXXTFDIRX 180 + + Y+FA ++ KRL D IE N+ F++ Sbjct: 395 ARFPYSFASDSVKRLIVNDKTIENKNN-------------------------KSVFEVNL 429 Query: 181 XXXXXXXXXXXXXXXXXDKKTISLYKDSIPKEKTEGTDAILISDNQLINQLQTAAKTSSS 240 + K +SLY+ + K G DA+LI D LIN L K+ S Sbjct: 430 SSDSDNNSNLIGTVSLENSKQVSLYEKQVDSNKQIGVDALLIKDETLINHL----KSLKS 485 Query: 241 QNKANTAAITFKQSNKSETDQSTTSQVIGYTTTASLKADKKNIFDVKKLNNEKSERKIIV 300 Q A +A+ T S+T Q+ T + +TT + AD+K IFDV KLN + + KII+ Sbjct: 486 QVSAKSASET------SQTKQNKT--FLAFTT---VNADQKAIFDVGKLNGKTA--KIII 532 Query: 301 GATVETLNQANTLQANEAIIKPAPGKYQSTDSHKVMITQGPNIVGIHANEKEDKETQKFI 360 AT T + +TLQ EAI+ AP +++STD + + QGP+++GIHANE+ED ET+KF+ Sbjct: 533 NATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFV 592 Query: 361 NWYLNKEESWSVQNSGSTTTKKQTAAQYFAEQSSYITPLKNNFKADQSATKDSTVNTNYF 420 NWYLN + W +NS +T A+Y A+++SY+ P KN ++T + N F Sbjct: 593 NWYLNTKVQWE-ENS------IKTPAEYVADKASYLLPFKNRL--------NNTNSYNEF 637 Query: 421 TKQTFDLFKEVNDGKVLGFNDPSDFRSGKFRNTIGSTFNATISSK-VDFNKFFENFKASL 479 K F D V F +P+DF S K R+ + S NA I++ +DF+ F + L Sbjct: 638 VKTAVSQFA---DKNVTKFAEPADFLSNKVRDGVKSNLNAAINNHSIDFDSFINDLTDYL 694 Query: 480 GS 481 GS Sbjct: 695 GS 696 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507887|ref|NP_109836.1| hypothetical protein MPN148 [Mycoplasma pneumoniae M129] (140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507888|ref|NP_109837.1| hypothetical protein MPN149 [Mycoplasma pneumoniae M129] (434 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 142 6e-036 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 142 bits (358), Expect = 6e-036, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 99/160 (61%), Gaps = 15/160 (9%) Query: 89 SYILIFQAAPRA--TWVFERKIKLELPYVKNESGAGDSTTTNSGSLYTTLQDLLVEQPVT 146 SY++ F + W +K +L++P V S + L++L++EQP+T Sbjct: 109 SYVVEFTNSTNIGIKWTMVKKYQLDVPNV-------------SSDMNQVLKNLILEQPLT 155 Query: 147 PYTPNAGLARVNGAAQDTVHFGSGQESSWNSQRSQKVLKNNPGPKAVTGFKLDKGRAYRK 206 YT N+ LA+ G Q VH GSGQ + W SQR+Q L NNP P A TGFKL G AYRK Sbjct: 156 KYTLNSSLAKEKGKTQREVHLGSGQANQWTSQRNQHDLNNNPSPNASTGFKLTTGNAYRK 215 Query: 207 LNEAWPVYEPLDSTKDGKGKDESSWNSSEKTTAESDAPLV 246 L+E+WP+YEP+D TK GKGKD S W+S+E+ A++DAP V Sbjct: 216 LSESWPIYEPIDGTKQGKGKDSSGWSSTEENEAKNDAPSV 255 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507889|ref|NP_109838.1| hypothetical protein MPN150 [Mycoplasma pneumoniae M129] (224 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 228 3e-062 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 228 bits (582), Expect = 3e-062, Method: Compositional matrix adjust. Identities = 111/202 (54%), Positives = 149/202 (73%), Gaps = 6/202 (2%) Query: 1 MGSNAVPSLWYWVVD---ERTTSGRGTWWAHTELNWGTDKQKEFVENQLGFNETSATDSH 57 MG++ +PS+WYWVV+ + S + TW+A+T L+WG DKQK+FVENQLG+ ET++T+SH Sbjct: 312 MGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWGEDKQKQFVENQLGYKETTSTNSH 371 Query: 58 NFKKALLHQPAYLISGLDVVADHLVFAAFRAGAVGYDMTTDTNAS---TYNQALTWSTTA 114 NF QPAYLISG+D V D ++F+ F+AG+VGYD ++ +++S T +QAL WSTT Sbjct: 372 NFHSKSFTQPAYLISGIDSVNDQIIFSGFKAGSVGYDSSSSSSSSSSSTKDQALAWSTTT 431 Query: 115 GLDSAGGYKALVENTAGLNGPINGLFTLLDTFAYVTPVSGMKGGSKNTEAVQTTYPVKSD 174 LDS GYK LV N GLNGPING F++ DTF++V P SG + T ++T YPVK D Sbjct: 432 SLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFVVPYSGNHTNNGTTGPIKTAYPVKKD 491 Query: 175 QKASAKIASLINASPLNSYGDK 196 QK++ KI SLINA+PLNSYGD+ Sbjct: 492 QKSTVKINSLINATPLNSYGDE 513 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507890|ref|NP_109839.1| hypothetical protein MPN151 [Mycoplasma pneumoniae M129] (133 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507891|ref|NP_109840.1| hypothetical protein MPN152 [Mycoplasma pneumoniae M129] (794 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 598 e-173 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 314 2e-087 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 598 bits (1542), Expect = e-173, Method: Compositional matrix adjust. Identities = 372/816 (45%), Positives = 475/816 (58%), Gaps = 129/816 (15%) Query: 1 MKFKYGAIVFSGLLGVSAILAACGARGKFNQVDDGKIKXXXXXXXXXXXXXXQKVVEKYN 60 MK K V + G S +L AC +F+QVDDGKIK + VV+KYN Sbjct: 1 MKLKGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYN 60 Query: 61 KVKGVNDYPIEITQIAGGYDGGRTDLQTRVNVKDTTNFYNLILNYPDLVSTLGRVGMELP 120 K DYPIEI QIAGGYDGG+ D+QT+V+ KD NFYNLILNYP++VSTL R M L Sbjct: 61 DTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALN 120 Query: 121 FDKVKTDKLADRFLDFNNRISAISKKGIYGIPVSLSTEVLSINGPVLHYILNSAQGK-VS 179 FD V DKL FL FN+RI I GIY IP+S+ST+++ INGPVLHYILNSA+ + Sbjct: 121 FDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTP 180 Query: 180 SVTSVQRTADSGSGTTNNNGVTKPLKIDKENESTKKLWEEIENKAKENGXXXXXXXXXXX 239 + T+VQ T S S L+I ++E+T KLW+ I+ A+ N Sbjct: 181 TSTTVQATVSSRSAEKKGT-----LEIANDSETT-KLWQNIQTTAQNNSNETTKEQKQVK 234 Query: 240 XXXXXQMSTQTQPTDNSNDANQSDQAIEKTWGKYQEVEGGLKDYTFKASVFENWHDLLDF 299 +T T T + D +SD I++ WG+YQEV+GGLK++TFKAS+FENW++ LDF Sbjct: 235 RSSSSSSTTST--TGETKDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDF 292 Query: 300 SNRVAKSFSN-INTNTNKKGTDIQGVLGIDSTPNSLFTSVFAAGGGNYDNFFYKV--ANG 356 + R+A SF + TNK G D+QGVLG+DS+ N+L+ +VFAAG NYDNFF+ + G Sbjct: 293 ATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTG 352 Query: 357 RADFSNFKNKGTSYQNLQKVYGDYKGLIDSNGLFVNKGGSYSSNFQKFHQLAYSISSTSG 416 AD+SNF NK +SYQNL+ VY D+ LI +NGLFVN+GGSYSSNF+KFHQLA+S+SS+ G Sbjct: 353 YADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSGG 412 Query: 417 FFYSFAGENSKRLKFDGGNF-IEFPGFTQAIYAPENNSQSGGESGDQTTNNEANLLGTFX 475 + Y FA +N+KRLKF N+ IE+P FTQ I AP N+S++ E+NLLGTF Sbjct: 413 YSYYFAKDNAKRLKF--SNYAIEYPSFTQTIQAP-NSSET-----------ESNLLGTF- 457 Query: 476 XXXXXXXXXXXXXXXXXXXXXXXXXXDQNQGKKGEGAQNQGKKGEGAQNQGKNGGVETTI 535 K E N K G+ GK GV+ Sbjct: 458 -------------------------------KLSEKDINLYK---GSIPSGKQQGVD--- 480 Query: 536 YLYKNSIPSGKNKGENAILIDNKTIVEQLESAAKKEDKKSGESTTEQTQIQSKSVTEQKQ 595 AILI N ++ LE A +K + ESTT Sbjct: 481 ----------------AILISNPNLINILEQAKQKNTAQGSESTTN-------------- 510 Query: 596 PKIIGYTTTGNVHEDNKHIFPIDKLTSDRNFDRKIIVGATEETLDKSNTLQSNEAIVLPA 655 KIIGYTTT NV+ DN++IF + KL +++ F RKIIV ATEETLD+S TLQSNE+IVLP Sbjct: 511 -KIIGYTTTANVNVDNQNIFSVSKLNNEQ-FQRKIIVNATEETLDQSQTLQSNESIVLPM 568 Query: 656 PSKYKSTDTNKVTITQGPNIIGIHVNEKENAETQKFVDWFLNSPQT-WEG--KGKGKEQT 712 P KYKSTD NKV ITQGPN+IGIH NEKEN ET+KFV+WFLN T W + K +QT Sbjct: 569 PGKYKSTDKNKVMITQGPNLIGIHANEKENIETKKFVNWFLNQSITDWNSNNQQKNSDQT 628 Query: 713 NKTAAEFFAESASYILPLKEIFEQK--------------------------NEKKEGSDQ 746 KTAAE+F + ASYILPLKE F + N S Sbjct: 629 TKTAAEYFTDQASYILPLKEKFNKSSDLELKGSSSSSNLTTSSASASLLISNNSSTASSP 688 Query: 747 KDSKSNGRGKQTNLYTEKALELFRGISTDQIVSYSD 782 K+N +N +T KALELF+ + ++I+ +SD Sbjct: 689 APKKTNNN---SNTFTAKALELFQQAANNEIIPFSD 721 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 314 bits (805), Expect = 2e-087, Method: Compositional matrix adjust. Identities = 189/440 (42%), Positives = 254/440 (57%), Gaps = 42/440 (9%) Query: 1 MKFKYGAIVFSGLLGVSAILAACGARGKFNQVDDGKIKXXXXXXXXXXXXXXQKVVEKYN 60 MKFK + S L ++ AC A +F+QVDDGKIK ++ KYN Sbjct: 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLATVTSASASGSLTT-IISKYN 59 Query: 61 KVKGVNDYPIEITQI--AGGYDGGRTDLQTRVNVKDTTNFYNLILNYPDLVSTLGRVGME 118 K NDYP+E+ + G Y G+ DLQ ++ KD NFYNL NY D+VS L R ME Sbjct: 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query: 119 LPFDKVKTDKLADRFLDFNNRISAISKKGIYGIPVSLSTEVLSINGPVLHYILNSAQGKV 178 L FD V T FL FNN IS ++ IY +P ++S EVL +NGPVLHYIL+SA+ Sbjct: 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDS 179 Query: 179 SSVTSVQRTADSGSGTTNNNGVTKPLKIDKENESTKKLWEEIENKAKENGXXXXXXXXXX 238 ++ S S + N+N T + D E T LW ++E AK Sbjct: 180 NTTLSTH------SASNNSNKGTMVVASDSE---TSSLWTKLEAAAK------------- 217 Query: 239 XXXXXXQMSTQTQPT----DNSNDANQ---SDQAIEKTWGKYQEVEGGLKDYTFKASVFE 291 M+ QT T NS+++NQ SD I+K WG YQEV+GGLK+YTFKASVF Sbjct: 218 -------MNAQTNETQVLKSNSSESNQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFN 270 Query: 292 NWHDLLDFSNRVAKSFSNINTNTNKKGTDIQGVLGIDSTPNSLFTSVFAAGGGNYDNFFY 351 NW DL DF+ R+AKSF+ + T T KKG ++Q V GI S N+L+T++FA+G +Y+NF + Sbjct: 271 NWKDLNDFATRIAKSFTKLQT-TTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLF 329 Query: 352 KVANGRADFSNFKNK-GTSYQNLQKVYGDYKGLIDSNGLFVNKGGSYSSN-FQKFHQLAY 409 + N R +FSNF NK T++QNL+ ++ +K LID NGL N + N + KF+QLA+ Sbjct: 330 NIKNQRINFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAF 389 Query: 410 SISSTSGFFYSFAGENSKRL 429 SST+ F YSFA ++ KRL Sbjct: 390 YTSSTARFPYSFASDSVKRL 409 Score = 134 bits (338), Expect = 3e-033, Method: Compositional matrix adjust. Identities = 81/212 (38%), Positives = 119/212 (56%), Gaps = 30/212 (14%) Query: 535 IYLYKNSIPSGKNKGENAILIDNKTIVEQLESAAKKEDKKSGESTTEQTQIQSKSVTEQK 594 + LY+ + S K G +A+LI ++T++ L+S ++Q+ +KS +E Sbjct: 451 VSLYEKQVDSNKQIGVDALLIKDETLINHLKSL--------------KSQVSAKSASETS 496 Query: 595 QPK----IIGYTTTGNVHEDNKHIFPIDKLTSDRNFDRKIIVGATEETLDKSNTLQSNEA 650 Q K + +TT V+ D K IF + KL KII+ ATE T K +TLQ EA Sbjct: 497 QTKQNKTFLAFTT---VNADQKAIFDVGKLNGKT---AKIIINATETTNAKISTLQEKEA 550 Query: 651 IVLPAPSKYKSTDTNKVTITQGPNIIGIHVNEKENAETQKFVDWFLNSPQTWEGKGKGKE 710 IVL AP +++STD + + QGP++IGIH NE+E+ ET+KFV+W+LN+ WE E Sbjct: 551 IVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFVNWYLNTKVQWE------E 604 Query: 711 QTNKTAAEFFAESASYILPLKEIFEQKNEKKE 742 + KT AE+ A+ ASY+LP K N E Sbjct: 605 NSIKTPAEYVADKASYLLPFKNRLNNTNSYNE 636 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507892|ref|NP_109841.1| conserved hypothetical protein, MG140 homolog, from M. genitalium [Mycoplasma pneumoniae M129] (1113 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072802.1| hypothetical protein MG140 [Mycoplasma genitali... 1696 0.0 >ref|NP_072802.1| hypothetical protein MG140 [Mycoplasma genitalium G-37] Length = 1113 Score = 1696 bits (4391), Expect = 0.0, Method: Compositional matrix adjust. Identities = 825/1113 (74%), Positives = 931/1113 (83%) Query: 1 MNDWQWLKNRLVNAKTKAVSFWLAQTTSTILDIAELIKCCSDLKNTSINGLVDLINQQEK 60 MNDWQWLKNRLVN+KTK+VSFWL QT+S I+DIAELIKCCS+LKNTSINGL+D +NQQ+K Sbjct: 1 MNDWQWLKNRLVNSKTKSVSFWLPQTSSNIIDIAELIKCCSELKNTSINGLIDFLNQQDK 60 Query: 61 LEFNLTRLKEIDGEDARQLFGIEGNVYKHFQTELSRFYKQTRKHFRETGSESLFLGLPVI 120 LEFNLTRLKEID ED +QLFGIE +VYKHFQ E++RFYKQ KHFRETGSESLFL LPVI Sbjct: 61 LEFNLTRLKEIDVEDGKQLFGIETSVYKHFQNEIARFYKQVNKHFRETGSESLFLALPVI 120 Query: 121 EGINEFNDVFRAPLLYVGVKLKVAPRLERFWLEINREEIFLNPTIIGVEINKRNSLFKNN 180 EGINEFND+FRAPLLYVGVKLKV+PR ERFWLEIN+EEIFLNPTIIGVE NKRNSLFKNN Sbjct: 121 EGINEFNDIFRAPLLYVGVKLKVSPRFERFWLEINKEEIFLNPTIIGVETNKRNSLFKNN 180 Query: 181 YDTTKVDINQALEIFRELEYQFRMPLTSELKSFSKKAKSDFNTEKRTNFLTNNVLLGIFD 240 YDTTK+D+N AL++F ELEY+FRMPLTSELKSFSKKAKSDFNTEKRTN+L NNVLLGIFD Sbjct: 181 YDTTKIDVNDALKVFSELEYEFRMPLTSELKSFSKKAKSDFNTEKRTNYLINNVLLGIFD 240 Query: 241 VKGDQLFQNFNEILNTDPXXXXXXXXXXXXXXXXXXEFRENFNLKGTYLFSHLDIFQQYA 300 VKGDQLFQNFNEILNTDP EFRE F+LK TYLFSHLDI+QQYA Sbjct: 241 VKGDQLFQNFNEILNTDPDVLDELLKDRRDLLLENREFREQFDLKDTYLFSHLDIYQQYA 300 Query: 301 VKQAFDGDVIIEGPPGTGKSETXXXXXXXXXXXXXXXXFVSEKVTALDVVYNRLGSFKHI 360 VKQA GD+IIEGPPGTGKSET FVSEKVTALDVVYNRLGSFKHI Sbjct: 301 VKQALLGDLIIEGPPGTGKSETIVNILVNLVLNNKKVLFVSEKVTALDVVYNRLGSFKHI 360 Query: 361 ALFNASVASEKKRFYSQFADYESFFTDNFSKKDLVNEMPVFDGQWVDKILSEFTNLQNIY 420 ALFNASVA+EKKRFY+QFA++E++FT FSKKDL +P F+G+WVD IL F LQ +Y Sbjct: 361 ALFNASVAAEKKRFYNQFAEFETYFTTYFSKKDLDATLPTFEGKWVDDILGAFQALQALY 420 Query: 421 DTQINSGNQSYSFKEILSSFPILDVSYIKIKEHDRFDEWVRVFSSQVWLEKHLTYLAFKA 480 DT+INSG +SFKEI+SSF +LD SYIKIKE++RFDEWVRVFS+ +WLEKHL+Y K Sbjct: 421 DTKINSGENLFSFKEIVSSFQMLDASYIKIKEYERFDEWVRVFSNPLWLEKHLSYQELKK 480 Query: 481 ELSKRWQNIDNFYALKDLLEKRKNIRVLCYVLDYFEQNNSIIKPKRVLLYTPTERGQKQL 540 ELS+RW IDNFY L+ LL + K +VL YVL++FEQ N++I PK VL Y P+ + Q L Sbjct: 481 ELSQRWNGIDNFYQLQSLLNQTKKRKVLNYVLEHFEQFNTVISPKHVLFYKPSNKSQLLL 540 Query: 541 HQLQQDVAKYNSLQRFKSAAKFETIKLNLANKLAQNAKPFFFSWFIQTHAQTLLENLVQT 600 QL+QDV +Y SLQRF+S KFETIKLN N++ +N P+FFSWFIQ HA+ LLE LV Sbjct: 541 KQLKQDVEQYTSLQRFQSPTKFETIKLNFINQVNENPTPWFFSWFIQFHAKPLLEKLVSF 600 Query: 601 QKQLVKAKQSYLSKIEQYVVSCKRILKATILANFFELYQTNKNELLDICREAKNPVLKEI 660 + ++K KQ+YL+ IE YV SCK++LK TIL NFF+LYQTNK+ELL+ICR+AKNPVLKEI Sbjct: 601 ESNIIKTKQAYLNGIESYVASCKKLLKTTILNNFFQLYQTNKDELLEICRQAKNPVLKEI 660 Query: 661 TWWFKKNFALLSKLFPVHIMTFESAALLTPNQRRLYDYVVIDEASQVYLERAIPILYRGA 720 TWWFKK+F LL KLFPVHIMT ESAA LTPNQR LYDYVVIDEASQV+LERAIPIL+R Sbjct: 661 TWWFKKHFELLKKLFPVHIMTLESAATLTPNQRGLYDYVVIDEASQVFLERAIPILFRAD 720 Query: 721 KYIIAGDTKQLKPSNFFQARAEYDVDEEFEDGNVEAAVHSTSLLHFLKNRSRILTLLKFH 780 KYIIAGDTKQLKP+NFFQ+RAEYDVDEEFEDGN+EAAVHS+SLLHFLKNRSRILTLLKFH Sbjct: 721 KYIIAGDTKQLKPANFFQSRAEYDVDEEFEDGNIEAAVHSSSLLHFLKNRSRILTLLKFH 780 Query: 781 YRSDSANLIAFTNNRIYNNELIFMNKATADKQVFIVHDVIDGIWRNNRNLQEARDVVQRL 840 YRSDSA+LIAFTNNRIY+NELIFMNKA AD++VFIVHDVIDGIW+NNRNLQEARDVVQRL Sbjct: 781 YRSDSADLIAFTNNRIYDNELIFMNKANADQRVFIVHDVIDGIWKNNRNLQEARDVVQRL 840 Query: 841 EQLTQTAEYQKSLGVICFNKNQAELIEYMIDKQNNPLLNEWRDRVNAQGEYVGLFVKNIE 900 EQLT T +Y+KSLGVICFNKNQA+LIEY+IDKQNNPLLNEWR+R N GEY GLFVKNIE Sbjct: 841 EQLTTTNDYKKSLGVICFNKNQADLIEYLIDKQNNPLLNEWRERQNDVGEYEGLFVKNIE 900 Query: 901 NVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNRASDYXXX 960 NVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNR DY Sbjct: 901 NVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNRGEDYNGL 960 Query: 961 XXXXXXXXXXVEYLLYCEAMANNQGESLDFQATQKQAPKAKYXXXXXXXXXXXXXXIFGE 1020 VEYLLYCEAMA NQGE + FQA +++ KAKY IFG Sbjct: 961 SSSSLGSKLLVEYLLYCEAMAKNQGEKITFQAVKRKETKAKYELAVENDFFNQLQAIFGG 1020 Query: 1021 QFTIKRNVNEGAYSFSFVFYFNENPYLAVDFNPALPHSRKEVSENIIYREQFLKKRKWNL 1080 +F IKRNVNEGAY FSFVFYFN PYLA+DFN +P SRK+V E I+YREQFLKKR+WNL Sbjct: 1021 EFEIKRNVNEGAYFFSFVFYFNNIPYLAIDFNIPIPTSRKQVMEGILYREQFLKKRQWNL 1080 Query: 1081 VNIWLDEWKLNPGGVLQKLRNCLTHSENEFEEI 1113 +NIW+DEWKLNP GV+ K+R+ L +N+ EEI Sbjct: 1081 INIWIDEWKLNPIGVISKIRSSLAVHQNQHEEI 1113 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507893|ref|NP_109842.1| N-utilization substance protein A homolog; similar to Swiss-Prot Accession Number P32727, from B. subtilis [Mycoplasma pneumoniae M129] (540 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072803.1| N-utilization substance protein A (nusA) [Mycop... 640 0.0 >ref|NP_072803.1| N-utilization substance protein A (nusA) [Mycoplasma genitalium G-37] Length = 531 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/419 (73%), Positives = 366/419 (87%), Gaps = 7/419 (1%) Query: 6 NHFTNPLLQLIKNVAETKNLAIDDVVLCLKTALAQTYKKHLNYVNVEVNIDFNKGLMQIE 65 N PLL +IKNVA+TKNL+I++VV CLKTAL Q YKKHLN+VNVEVNI+F+KG++ +E Sbjct: 27 NELNQPLLAIIKNVAKTKNLSIEEVVFCLKTALEQAYKKHLNFVNVEVNINFDKGIINVE 86 Query: 66 QLFXXXXXXXXXXXXFLEMPLSEAKKLNPNLEVGGVLRKPVSLKDIKGDLISKMVLLFNQ 125 QLF FLE+PL A K+N +L++G VLRKP+ LK+I DLI+KM+ +FNQ Sbjct: 87 QLFNVVSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISSDLINKMIAIFNQ 146 Query: 126 KINETAFKTVMSDFINEVGQVIEARVEDIDTNKDGGLKGYIVNLETTKGYMPKRELSKGE 185 KI+ET FK VMS+F +EVG+VIEA+VEDIDTNK+GGLKGYI+NLETTKGY+ KRELSKGE Sbjct: 147 KISETNFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTKGYISKRELSKGE 206 Query: 186 KLDIGKKYLFVIKEIQKQSSMWPITLSRSDSRLLEFLLNSNTPEIANGTIEIKKMERSPG 245 +L+IGKKYLFVIKEIQ+Q+S+WPITLSRSD+RLL+FLL SNTPEI NGTI IKK+ERSPG Sbjct: 207 RLEIGKKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENGTIVIKKIERSPG 266 Query: 246 TKSKVAVISKDPVVDPIAAILGPKGERIRGISEEFNGEIIDIVIWNEDKLKFLVNAVLPA 305 KSK+AVIS DP VDP+AAILGPKGE+IRGISEEFNGEIIDIV WNEDKLKFL+NA+LPA Sbjct: 267 VKSKIAVISNDPAVDPVAAILGPKGEKIRGISEEFNGEIIDIVFWNEDKLKFLINAILPA 326 Query: 306 EVVGYNILQDDERDTSIEIVVPANQIANVFGFKGINIRLISNLTGWSSVDVYTEKDAAEQ 365 EV+GYNILQDDERDTSIE+VVPANQIANVFGFKG+NIRLISNLTGW+SVDVY+EKDA+E Sbjct: 327 EVIGYNILQDDERDTSIEVVVPANQIANVFGFKGVNIRLISNLTGWNSVDVYSEKDASEA 386 Query: 366 GIEFTRVNFQPQGIFGIKKRRDKISNNPRNNNQQLASDKVFYTSKANVVDDEIIVDLAK 424 I+FTR++F+P+G+FGIKKRR+KI +N A+DKVFYTSK NV+DDEIIVDLAK Sbjct: 387 NIKFTRLSFEPEGLFGIKKRREKIISND-------ATDKVFYTSKDNVIDDEIIVDLAK 438 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507894|ref|NP_109843.1| protein synthesis initiation factor 2 [Mycoplasma pneumoniae M129] (617 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072804.1| translation initiation factor 2 (infB) [Mycopla... 995 0.0 >ref|NP_072804.1| translation initiation factor 2 (infB) [Mycoplasma genitalium G-37] Length = 619 Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/613 (78%), Positives = 546/613 (89%), Gaps = 3/613 (0%) Query: 5 KPRHF---QKNKFDNRAKTSAKQQFRQVKTGVKDGVFVYKGPLTVSEFCLKTNIPTANII 61 K R F +K KFD R KTSAK Q R VKTGVKDGVF+YKGPLTVSEF KTNI ANII Sbjct: 3 KNRAFNQVKKTKFDGRIKTSAKHQLRNVKTGVKDGVFIYKGPLTVSEFASKTNIAVANII 62 Query: 62 KHFFLNGVPLTLNSVLSTEQLADACVNFGFDFKVETEITHDNIISNIKFDDDPTQLSPRP 121 KHFFLNG+ LT+NSVL+ EQLADACVNFGFDFK+ETE+TH+NI++NI+F+D L PRP Sbjct: 63 KHFFLNGLALTVNSVLTNEQLADACVNFGFDFKMETEVTHENIVANIQFEDSDDLLQPRP 122 Query: 122 PIVTIMGHVDHGKTSLLDAIRQTNTAAKEFGGITQKIGAYQVKNQEGKTITFIDTPGHEA 181 PIVTIMGHVDHGKTSLLD IR+TN AKEFGGITQKIGAYQVKN + KTITFIDTPGHEA Sbjct: 123 PIVTIMGHVDHGKTSLLDTIRKTNVTAKEFGGITQKIGAYQVKNHQNKTITFIDTPGHEA 182 Query: 182 FTGMRARGAQVTDIVVLVVAGDDGLKQQTEEAISHAKSAKTPIIVFINKMDKPTANPDMV 241 FT MRARGA+VTDIVVLVVA DDG+K+QTEEAISHAKSA TPIIVFINKMDKPTANPD+V Sbjct: 183 FTLMRARGAKVTDIVVLVVAADDGIKKQTEEAISHAKSANTPIIVFINKMDKPTANPDLV 242 Query: 242 IQQLNKFDLVPEEWGGDTIFVKGSALTKEGIQELLDSILLVAEVEDYKANFNAHSSGYAI 301 IQQLNKFDLVPE WGG TIFV GSALT +GI ELLD+ILL+ EVE Y+AN+NAHSSGYAI Sbjct: 243 IQQLNKFDLVPEAWGGKTIFVMGSALTGQGINELLDNILLLGEVEGYQANYNAHSSGYAI 302 Query: 302 EVQTTKGLGPTATIIVKRGTLKIGDIVVLGPAWGKVRTMQDENGVHLQEAMPSKPVQISG 361 EVQT+KGLGP A +IVKRGTLK+GDIVVLGPA+G+VRTM DENG L++A PSKPVQISG Sbjct: 303 EVQTSKGLGPIANVIVKRGTLKLGDIVVLGPAYGRVRTMHDENGNSLKQATPSKPVQISG 362 Query: 362 FDIVPVAGEKFIVFDDEKDAKLIANKFREQQKQKLNTTQINEELKQKIKSKEIKVLNLIF 421 FDI+PVAGEKFIVFDDEKDAKLIANKF+EQQKQK N +N+ LK++IK+KEIK+LNLIF Sbjct: 363 FDIMPVAGEKFIVFDDEKDAKLIANKFKEQQKQKANNLTVNQTLKEQIKNKEIKILNLIF 422 Query: 422 KVDSDGSLAAIKQAMQSIDVPGMSVNIIHSGVGLISENDIMLAKASGALLFSLNLGLSQV 481 K DSDGSL AIKQA+++I+V +S++IIH+ VG ISE+DIMLAKASGALLFSLNLGLSQ Sbjct: 423 KADSDGSLQAIKQAVENINVAKISLSIIHAAVGQISESDIMLAKASGALLFSLNLGLSQT 482 Query: 482 VKNIASLQGVKVDVHYHIPKLAEEIENILKGQLEPVYEDVELGRAEVLQLWYHSKVGHIA 541 VKNIASLQGVK++VHYHIPKLAEEIENILKGQL+PVYE++E+G+AEVLQLW+HSK+G+IA Sbjct: 483 VKNIASLQGVKLEVHYHIPKLAEEIENILKGQLDPVYEEIEIGKAEVLQLWFHSKIGNIA 542 Query: 542 GTLVKTGKVKRGALCKLLRRNETIYEGRVDSLKSEKNPVNQMEAGKNCGIVINGCEDIQV 601 GT+VK+GK+KRG LCKL R E I+EGR+DSLK+EK PVN +E GKNCGIVINGC DI++ Sbjct: 543 GTIVKSGKIKRGNLCKLFRDKEIIFEGRIDSLKNEKTPVNLIETGKNCGIVINGCNDIKI 602 Query: 602 CDIILVYEKQEVK 614 DII+ YEKQ VK Sbjct: 603 GDIIVAYEKQIVK 615 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507895|ref|NP_109844.1| ribosome binding factor A [Mycoplasma pneumoniae M129] (116 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072805.1| ribosome-binding factor A, putative [Mycoplasma... 167 3e-044 >ref|NP_072805.1| ribosome-binding factor A, putative [Mycoplasma genitalium G-37] Length = 112 Score = 167 bits (423), Expect = 3e-044, Method: Compositional matrix adjust. Identities = 78/111 (70%), Positives = 95/111 (85%) Query: 1 MASYKKERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQID 60 MASY+K+R+ENDIIRLINRT+I+EIY+ VK GHV+HVKLS D H VYLDCY+R QI Sbjct: 1 MASYRKQRIENDIIRLINRTIINEIYDPVVKLGHVSHVKLSADFFHAVVYLDCYDRSQIQ 60 Query: 61 RVVGAFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAMRIESIINSLK 111 VV AF +A+GVFS++LA NLYLAK+V++HFVKD AIDNA++IE IINSLK Sbjct: 61 TVVNAFKKAQGVFSQMLAQNLYLAKSVKLHFVKDDAIDNALKIEQIINSLK 111 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507896|ref|NP_109845.1| hypothetical protein MPN157 [Mycoplasma pneumoniae M129] (402 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072806.1| hypothetical protein MG144 [Mycoplasma genitali... 179 4e-047 >ref|NP_072806.1| hypothetical protein MG144 [Mycoplasma genitalium G-37] Length = 279 Score = 179 bits (455), Expect = 4e-047, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 130/200 (65%), Gaps = 8/200 (4%) Query: 205 LPPGVKAEPESK-KRFGLFKAF-QKDDAKQPKQKLNLQDQQDRFIDDPTAKKHFSAFNQK 262 LPPGVK + ++K RF F +F KQP + +R +DDPT K FSAFN+K Sbjct: 86 LPPGVKNQADNKTNRFSKFISFFTSSKNKQP------DEITERLVDDPTVKNRFSAFNKK 139 Query: 263 VGNLLKDKKTRNRDWKIVGWIHGXXXXXXXXXXAIMNKFVTLPAQSYPAVSLQVSINNAL 322 + +LKDKK R R WKIVG+ + A+MNKF+TL + YPA++LQ+ INNAL Sbjct: 140 LIWVLKDKKLRARAWKIVGYTNLVIVAFFAGLLAVMNKFITLSSVEYPAIALQLPINNAL 199 Query: 323 WGIAIFVIANIALPFITMFVLFLTGVRDVHASRPVHYFIWVLMLLNLTFLVISCCXXXXX 382 WGI+IFVI+ + LPF TMF+LFL GV+DV SR +HYFIW+++++N+ L++SC Sbjct: 200 WGISIFVISIVTLPFWTMFILFLMGVKDVRTSRSIHYFIWIVLIINVVLLLVSCLLMIAA 259 Query: 383 XXXXXXXXIWRNLQALDPNN 402 IWRNL++L+PNN Sbjct: 260 YAHLDGYNIWRNLESLNPNN 279 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507897|ref|NP_109846.1| riboflavin kinase (EC 2.7.1.26) (flavokinase)/FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase); bifunctional [Mycoplasma pneumoniae M129] (269 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072807.1| riboflavin kinase/ FMN adenylyltransferase, put... 241 4e-066 >ref|NP_072807.1| riboflavin kinase/ FMN adenylyltransferase, putative [Mycoplasma genitalium G-37] Length = 269 Score = 241 bits (616), Expect = 4e-066, Method: Compositional matrix adjust. Identities = 114/262 (43%), Positives = 174/262 (66%), Gaps = 2/262 (0%) Query: 3 QTLIIGAFDGLHKGHQLLAQAASGPVVALLIANIPSLQSDWLYEPKQRQVQLQQHFQSVV 62 ++L IG FDGLH+GH L Q + + LLI N P Q++WLY+ +QR Q++ + ++ V Sbjct: 2 KSLFIGYFDGLHQGHLFLKQNSKFEPMVLLIDNPPLKQTNWLYDLQQRVAQIKTYLKATV 61 Query: 63 HSYDVIEHNISAQAFFDQIISPLRCQQLVVGADFCFGKDNQNADFLRRLFPNTTIIPKDS 122 +DV +HN++A +FF+Q I L C +++VG D+ FG D+++ +L++LF NT I+ K + Sbjct: 62 EVFDVAKHNMNALSFFEQQIKRLNCDEIIVGTDWHFGNDHKDGIWLKKLFKNTVIVNKTN 121 Query: 123 QTLSSSTIRQWLKQGQIEQANAVLLEPYFREGVVIRGNQQARFLGWPTANITLKPYMVPL 182 LSSS IR +L ++E+AN +L+EPY+R G V+ G ++AR LG+PTANI + +++ L Sbjct: 122 --LSSSVIRNYLTNNELEKANQLLVEPYYRVGTVVHGLKKARLLGFPTANIVMDNHLLTL 179 Query: 183 RCGSYVITVTYHQTNYPGVGFISYKNDQLVCETHLIGFSGDLYGKQLRFTFNQFIRPQQK 242 GSY++ V + + G+GFIS K+ LVCETH+ F+ ++YG ++FT +FIR K Sbjct: 180 NKGSYIVRVLLNNQTFYGIGFISQKDQDLVCETHIFNFNNEIYGSLVKFTLLKFIRTISK 239 Query: 243 FSGVQALQKAISGDLKQAQKWF 264 FS ALQKAI D A KW Sbjct: 240 FSSQAALQKAIQSDANFALKWL 261 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507898|ref|NP_109847.1| tlyC homolog, hemolysin activity doubtful [Mycoplasma pneumoniae M129] (424 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072808.1| hypothetical protein MG146 [Mycoplasma genitali... 570 e-164 >ref|NP_072808.1| hypothetical protein MG146 [Mycoplasma genitalium G-37] Length = 424 Score = 570 bits (1469), Expect = e-164, Method: Compositional matrix adjust. Identities = 273/423 (64%), Positives = 329/423 (77%) Query: 1 MESAPXXXXXXXXXXXXXXXXCISAVVSAYETAITSITSYKWSNYVKTHNKQKKLTTKIV 60 M+SAP IS VVSAYETAITS+T Y+W NY+KT+NKQ KL+TKI+ Sbjct: 1 MDSAPSGLTLTVIILSIILLAFISTVVSAYETAITSLTPYRWKNYIKTNNKQDKLSTKII 60 Query: 61 NHFQKNYSACLITILVANNIVAILVSNILFLALDQSIKNPAISSALNLLISGVLLLMLCE 120 NHFQ +YS+CLITIL+ NNIVAI+VSNILFLAL+Q+IKN +SS LNL++SGVL++ CE Sbjct: 61 NHFQNHYSSCLITILITNNIVAIMVSNILFLALEQTIKNELLSSVLNLVVSGVLIVSFCE 120 Query: 121 ITPKTLARINIIRXXXXXXXXXXXXXILFWPITKLASIIFAKYEKAPPVSRRDVYFFIDE 180 I PKTL RIN+IR ++FWPITKL S+I KYE PVSR+DVY+FIDE Sbjct: 121 ILPKTLGRINVIRTLVLFAYLVYFFYLIFWPITKLTSLILKKYENPLPVSRKDVYYFIDE 180 Query: 181 IEQNGLFTKEDGQLIKRTLIFDQVLVDQIMIKWNRVVYCYEGDPVKTIKEKFLHGQFSRM 240 IEQNGLF+KED LIK+TLIFDQVLV ++MIKW +V YCY D + I ++FL QFSRM Sbjct: 181 IEQNGLFSKEDSLLIKKTLIFDQVLVKKVMIKWKKVAYCYLNDSINLIAKQFLQRQFSRM 240 Query: 241 PVLDQTSNEVVGFIHLKDLFSSLEKSNEPFVLQELLYPAVLVSNTTPIKQALRQMRLHRA 300 PV+D+T+N++VGFIHLKD F++ E + + L +LLYP VLV ++TPIKQALRQMRL+RA Sbjct: 241 PVVDKTTNKIVGFIHLKDFFTAKEANPKSLDLNQLLYPVVLVQDSTPIKQALRQMRLNRA 300 Query: 301 HLAVVQDKHHHTIGIVSMEDIIEELVGEIYDEHDEVEAVQTLDNNTWLVLPNVKAAFFFN 360 HLAVV DKH TIGIVSMEDIIEELVGEIYDEHD+++ +Q LD N WLVLPNVKAA+FFN Sbjct: 301 HLAVVNDKHEKTIGIVSMEDIIEELVGEIYDEHDDIQPIQVLDENVWLVLPNVKAAYFFN 360 Query: 361 KWIKRDLVKSKNMTIQRYLASFENDGLNTQNKLETPWFIAEAIVDSENPEQIRYEIRKKS 420 KWIK DLVKSKN+TIQ YLAS +ND QNKL+TP F E I DSE+ +I YEIRKKS Sbjct: 361 KWIKPDLVKSKNITIQHYLASLDNDSFACQNKLDTPLFSVEVIADSEDKTKILYEIRKKS 420 Query: 421 DVV 423 DV+ Sbjct: 421 DVI 423 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507899|ref|NP_109848.1| hypothetical protein MPN160 [Mycoplasma pneumoniae M129] (377 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072809.1| hypothetical protein MG147 [Mycoplasma genitali... 405 e-115 >ref|NP_072809.1| hypothetical protein MG147 [Mycoplasma genitalium G-37] Length = 375 Score = 405 bits (1041), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/367 (56%), Positives = 264/367 (71%), Gaps = 4/367 (1%) Query: 12 KTNKQSRXXXXXXXXXXXXXXXXXXXXXXFSSSGRIDHGDHFHLRERXXXXXXXXXXXXX 71 KTNK + FS+ G IDHGDH HLR R Sbjct: 12 KTNKNCKALLLLLIPLLVGLTLIIYGIVLFSTEGVIDHGDHNHLRARFQLTLEEIIVFVV 71 Query: 72 ASVVFALTVALFGLGCWKLLQGPKVDRTNIKLAN-SNPAPQAVVLQADCDHFQVGDHCVF 130 S++ T+A F + C+ L++ PK + + AN +N P+A+V +CD FQ+GD+CVF Sbjct: 72 GSIILFFTLASFCVSCFMLMRSPKQKQLEVDHANKTNLKPKAIV---NCDLFQLGDYCVF 128 Query: 131 SAEXXXXXXXXXXXXLGKSKFSFRNELYRFCLIGVLISLNLALSMVEIPGIVLPWGSSIQ 190 + + +SKFSFR+ELYR CL+GVLI+LNLALS++EIPGIVLPWGSSIQ Sbjct: 129 TFKKLSFKQRFKQDFFARSKFSFRSELYRLCLVGVLIALNLALSLIEIPGIVLPWGSSIQ 188 Query: 191 FRFFNTAILFIAIRFVGLLSTSLIAIITPWIHLLLHPVHTPISTVFYMGNDLVVLWIFYF 250 FRFFNTAILFIA+R VGLLSTSL+A+ITPW+HLL+HP+HTPIS++FYM ND +VLWIFYF Sbjct: 189 FRFFNTAILFIAVRLVGLLSTSLVALITPWLHLLIHPIHTPISSLFYMVNDFLVLWIFYF 248 Query: 251 FYYHIFKAEVKQTTTVVNNKEFSQLVNTHKTKVAKALALIPVNLICGFIEGLGFYVGYFL 310 F++H+FKAEV QTTTVV+NK FSQLVNT KTK K +L+ ++ +CGFIEGLGFY GYFL Sbjct: 249 FFFHLFKAEVNQTTTVVDNKPFSQLVNTKKTKWTKFFSLLVISFLCGFIEGLGFYFGYFL 308 Query: 311 ILGKFGSVGHKIFYDSQANRDLINSANVIYFLLTTTTIFSLKYLFELLFFYSVEKGILNI 370 ILG S+G KI+YD RDLINS+NV++FL+TTT IFS+KY+FE+LFF+SVEK ++NI Sbjct: 309 ILGNVSSLGLKIYYDGLQQRDLINSSNVLFFLMTTTAIFSIKYIFEMLFFFSVEKNVVNI 368 Query: 371 SRHFGLY 377 + HFGLY Sbjct: 369 ANHFGLY 375 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507900|ref|NP_109849.1| hypothetical protein MPN161 [Mycoplasma pneumoniae M129] (445 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072810.1| hypothetical protein MG148 [Mycoplasma genitali... 296 2e-082 >ref|NP_072810.1| hypothetical protein MG148 [Mycoplasma genitalium G-37] Length = 409 Score = 296 bits (759), Expect = 2e-082, Method: Compositional matrix adjust. Identities = 190/450 (42%), Positives = 265/450 (58%), Gaps = 56/450 (12%) Query: 4 VKYLQVEIVDKNTIRLQEDGKKGQQIRLDQIIKVDQSNILNTLXXXXXXXXXXXXXXXXQ 63 +KY++V+I++K+TI L ED KKG++I LD I +VDQ+NILNT+ Sbjct: 1 MKYVKVQIINKSTIELLEDAKKGEKINLDLINQVDQTNILNTI--------------TTN 46 Query: 64 TKLA--KELSEKDNTFLKQKAAWNQAHNTQIQQLYQQITNLENQVNN----IKRETESKK 117 KLA KELS A + N I+ +I L+ +N+ + +T+ + Sbjct: 47 QKLAWEKELS----------AQFINQQNELIKNFEIEIIKLKTMLNDKEQALLLKTKLEL 96 Query: 118 DNEYQQQIVKLETQLQSIK---KETE--SQKDLEYERKANKTKXXXXXXXXXXXXYFLEQ 172 N++Q+QI ++ +K KE E +QK LE K + + F E+ Sbjct: 97 QNQFQKQIENYINEINKLKLTNKELEITNQKQLESSLKLQRNE-------------FEEK 143 Query: 173 LEQAQKDIEELKTREERFSKWAIAKKGKELEKWCWEAYKNYEELFQNCVFAPYSELVKGA 232 + Q IE+LK ++ R S WA+AKKG ELEKWC Y++Y + F+NC F Y Sbjct: 144 INQQNLTIEKLKIQQARSSIWAVAKKGNELEKWCENQYESYADSFENCQFTRY------- 196 Query: 233 KKSIGVEDDESNINEKADFIFQVFNPNNDKEPFFSICCEMKTEFTESKSRTKNEDHVKKL 292 K I + D+ NEKAD+IF F +K PF SICCEMK+EF +SK ++KN+DH+ KL Sbjct: 197 KTEINLLDENDFPNEKADYIFSFFGEKTNKIPFLSICCEMKSEFNDSKHKSKNKDHISKL 256 Query: 293 IADAKRAKCQYGFLVSELELNTENDVQVQRMHTSNSEVEVYLVRPMFFIVMLRLFYFLAK 352 + DAKRA C+Y FL+SELEL TEND+QV+ M T S VEVYLVRPMFFI+ML+LFY LAK Sbjct: 257 VRDAKRANCKYAFLISELELETENDIQVRLMPTLESGVEVYLVRPMFFILMLKLFYKLAK 316 Query: 353 KMFAQVDVNS-EYLDKEALNASFSDLKKSLLEKTFTDLNKVFQNNIDELEKIEGLVTKLK 411 K+FA S E +DK LN F LK + L KTF ++ KV ++N+ ++E +E V KL+ Sbjct: 317 KLFALNRFQSVELIDKNKLNEQFKQLKDNFLTKTFLEIEKVCKSNLVDIETLEKAVVKLR 376 Query: 412 AANEKALNSRLNNWEEKIRKFEFKLNKDIV 441 NE+ L+ LN W +KI F+ +L K I Sbjct: 377 VRNERVLDQLLNKWTKKIDSFDLQLTKKIT 406 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507901|ref|NP_109850.1| hypothetical protein MPN162 [Mycoplasma pneumoniae M129] (320 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072811.1| lipoprotein, putative [Mycoplasma genitalium G-37] 128 9e-032 >ref|NP_072811.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 281 Score = 128 bits (321), Expect = 9e-032, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 123/313 (39%), Gaps = 42/313 (13%) Query: 1 MKLNLRFPSYFLPVVAASAFLVSCATPNTYEVQRAALIQLVEEDERQNYIQKGSMGANAV 60 MKL + LP + S L SCA+ NTY+ QR ALI L R I V Sbjct: 1 MKLYRSLKAALLPGICTSILLASCASTNTYQDQRNALISLASN--RDTLIANAKKSKEEV 58 Query: 61 MXXXXXXXXXXXXXXXXXXXXXIELXXXXXXXXXXXXXENKSASGYKLDTLFGDYILWVV 120 I E + S Y LD LF DYIL+VV Sbjct: 59 QKEVTKMNSSTSSMMTATQSVAI---------TTHQTTEKTNNSKYDLDKLFKDYILYVV 109 Query: 121 DHLSGLLFSPKTNNSTTTQKIQLITEDKMILDGGNLTVEKNHEHGHTHKNXXXXXXXXXX 180 D+ SGL+F T +IQLI +DK ILDGGNLT H H + Sbjct: 110 DNFSGLVFKR-----TGGHRIQLIDKDKEILDGGNLT---KHTHHDHNHMHNHEHEHEEH 161 Query: 181 XXXXXXVIVGRALSFANGLFLVVDLXXXXXXXXXXXXXXXXXXXXDMVXXXXXXXXXXXX 240 +VGRALSF NG+FLV+D Sbjct: 162 HDEEETEVVGRALSFTNGIFLVIDYK----------------------KDSERKNMSGST 199 Query: 241 XXXXXXXXXXXHEHPHKKLSLSTTAYKFGQSFNILEFTGAMHHKTAHNNETEFKNLGKKY 300 +KLSL+ AYKF FNI EF A HHK +HN++TEF NL KY Sbjct: 200 TMMHQHHHEAEEHKEERKLSLNLKAYKFNTPFNISEFISAWHHKESHNSDTEFNNLHNKY 259 Query: 301 GGMTEYTIVDFDF 313 E I+D++F Sbjct: 260 DK-EELDIIDYNF 271 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507902|ref|NP_109851.1| hypothetical protein MPN163 [Mycoplasma pneumoniae M129] (112 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072812.1| hypothetical protein MG149.1 [Mycoplasma genita... 89 1e-020 >ref|NP_072812.1| hypothetical protein MG149.1 [Mycoplasma genitalium G-37] Length = 137 Score = 89.4 bits (220), Expect = 1e-020, Method: Compositional matrix adjust. Identities = 55/112 (49%), Positives = 65/112 (58%) Query: 1 MIDRFFWSILSFLLTNXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXXXXXXYNILFLSY 60 +I RFFWSILSFL+TN + YNI FLSY Sbjct: 26 IISRFFWSILSFLITNLIFFFAAFVALLIYLLASVDNQFAFVFIAAIIFIIFYNIFFLSY 85 Query: 61 LLTMYIKGLKQIEQKSRYLLLVLDVKADELLPFSFLGSLRKSHMLEEMLLEQ 112 LL +Y KG K IE +YLL +LD+K+DELLPFS LGSLRK +ML+EMLLEQ Sbjct: 86 LLFIYFKGQKAIENNCKYLLTILDIKSDELLPFSLLGSLRKGYMLDEMLLEQ 137 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507903|ref|NP_109852.1| ribosomal protein S10 [Mycoplasma pneumoniae M129] (108 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072813.1| ribosomal protein S10 (rpS10) [Mycoplasma genit... 193 4e-052 >ref|NP_072813.1| ribosomal protein S10 (rpS10) [Mycoplasma genitalium G-37] Length = 106 Score = 193 bits (490), Expect = 4e-052, Method: Compositional matrix adjust. Identities = 99/108 (91%), Positives = 103/108 (95%), Gaps = 2/108 (1%) Query: 1 MNAANAVKYPELKIKLESYDSTLLDLTTKKIVEVVKGVDVKIKGPLPLPTKKEVITIIRS 60 MN+A VKYPELKIKLESYDSTLLDLT KKIVEVVKGV++KIKGPLPLPTKKEVITIIRS Sbjct: 1 MNSA--VKYPELKIKLESYDSTLLDLTIKKIVEVVKGVNIKIKGPLPLPTKKEVITIIRS 58 Query: 61 PHVDKASREQFEKNRHKRLMILVDVNQGAIDSLKRIKIPVGVTLRFSK 108 PHVDKASREQFEKN HKRLMILVDVNQG IDSLK+IKIPVGVTLRFSK Sbjct: 59 PHVDKASREQFEKNTHKRLMILVDVNQGGIDSLKKIKIPVGVTLRFSK 106 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507904|ref|NP_109853.1| ribosomal protein L3 [Mycoplasma pneumoniae M129] (287 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072814.1| ribosomal protein L3 (rpL3) [Mycoplasma genital... 375 e-106 >ref|NP_072814.1| ribosomal protein L3 (rpL3) [Mycoplasma genitalium G-37] Length = 257 Score = 375 bits (963), Expect = e-106, Method: Compositional matrix adjust. Identities = 176/226 (77%), Positives = 205/226 (90%) Query: 1 MEIRGIFGVKVGMSQVFTTNNERLPITVIYCEPNQVAGVKTEAKDKYSATLLSFDTVENK 60 M++RGIFGVKVGMSQ+FT NE LPIT++YCE NQVAG+KT AKD Y+ATLLSF TV+ K Sbjct: 1 MDVRGIFGVKVGMSQIFTEQNECLPITIVYCEANQVAGIKTIAKDNYNATLLSFQTVDEK 60 Query: 61 KLNKPQQGFFEKNNLKPTKHLQEIRNMTGFEMGQQITPQNLFQVGEYVDVSAISKGRGFT 120 +LNKP+QGFF K L+P K+L+EIR M GFE+G++ITPQ LF++GEYVDV++++KGRGFT Sbjct: 61 QLNKPKQGFFSKLKLEPHKYLREIRKMQGFELGKKITPQELFKIGEYVDVTSLTKGRGFT 120 Query: 121 GAIKRWNFKIGPLGHGAGYPHRFQGSVQAGRGGASAQRVFKGKKMSGHYGHEKVTVQNLR 180 GAIKRWNFKIGPLGHGAGYPHRFQGSVQAGRGG+SAQRVFKGKKMSGHYGHE+VT+QNL Sbjct: 121 GAIKRWNFKIGPLGHGAGYPHRFQGSVQAGRGGSSAQRVFKGKKMSGHYGHEQVTIQNLF 180 Query: 181 IVGFDEANMLVLVSGAIAGPEGGVVLIRTAKKKPGVVKPIELAVQT 226 IVGFDE N LVLVSGAIAGPEGG+VLI+TAKKK G +K I+LAVQT Sbjct: 181 IVGFDEINKLVLVSGAIAGPEGGIVLIKTAKKKTGKIKDIKLAVQT 226 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507905|ref|NP_109854.1| ribosomal protein L4 [Mycoplasma pneumoniae M129] (212 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072815.1| ribosomal protein L4 (rpL4) [Mycoplasma genital... 220 8e-060 >ref|NP_072815.1| ribosomal protein L4 (rpL4) [Mycoplasma genitalium G-37] Length = 211 Score = 220 bits (561), Expect = 8e-060, Method: Compositional matrix adjust. Identities = 111/194 (57%), Positives = 143/194 (73%), Gaps = 1/194 (0%) Query: 1 MAKLKLIKIDGSFETEPVKLSPGLIAKELKQQPVFDAVLVEQASWRQGTHSILTKGEVRG 60 MAKLK+I+ DGSF+ E ++ + L+ K+ QPVFDA+L+EQA+ RQGTHS LTKGEV G Sbjct: 1 MAKLKVIQFDGSFKGE-IQPANHLLLKKAVIQPVFDAILLEQAACRQGTHSTLTKGEVSG 59 Query: 61 GGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPNRNYSLKLNKKAHTAALHTVWSEKL 120 GGKKPYKQKHTGKARQGS RNPH+VGGG+VFGPKPNRNY LKLNKKA+ AL + +++KL Sbjct: 60 GGKKPYKQKHTGKARQGSIRNPHYVGGGVVFGPKPNRNYKLKLNKKAYQLALTSAFAQKL 119 Query: 121 ASDNTHLVDQNLFNKTEGKTKVMMQFLKSAKLLDKXXXXXXXXXXXXXEQSTSNIKNVQV 180 ++ + + LF +T KTK M+ FLK+AKL ++ ST+N+K + V Sbjct: 120 NNNQVIVAEAKLFEQTNAKTKKMLTFLKNAKLTEQKLLFVIDTISKPLLLSTNNLKQIVV 179 Query: 181 KHLDKVSVRDLMLA 194 K +KVSVRDL+LA Sbjct: 180 KQFNKVSVRDLLLA 193 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507906|ref|NP_109855.1| ribosomal protein L23 [Mycoplasma pneumoniae M129] (237 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072816.1| ribosomal protein L23 (rpL23) [Mycoplasma genit... 160 2e-041 >ref|NP_072816.1| ribosomal protein L23 (rpL23) [Mycoplasma genitalium G-37] Length = 106 Score = 160 bits (404), Expect = 2e-041, Method: Compositional matrix adjust. Identities = 73/96 (76%), Positives = 87/96 (90%) Query: 1 MDVTNVLLKPVLTEKVYFNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIR 60 MDVTN+LLKPVLTEK Y NQMGE KKYVF +NPKA+KT+VKLAFE++YG+KPLK+NTLIR Sbjct: 1 MDVTNILLKPVLTEKSYLNQMGELKKYVFAINPKATKTKVKLAFEIIYGVKPLKINTLIR 60 Query: 61 KPTTIRGGSRFPGLSKLEKLAVITLPKGIAISVTGE 96 KP TIR G+++PG SKL KLAVITLPKG+ I++TGE Sbjct: 61 KPVTIRNGTKYPGFSKLAKLAVITLPKGMDIAITGE 96 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507907|ref|NP_109856.1| ribosomal protein L2 [Mycoplasma pneumoniae M129] (287 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072817.1| ribosomal protein L2 (rpL2) [Mycoplasma genital... 516 e-149 >ref|NP_072817.1| ribosomal protein L2 (rpL2) [Mycoplasma genitalium G-37] Length = 285 Score = 516 bits (1329), Expect = e-149, Method: Compositional matrix adjust. Identities = 250/287 (87%), Positives = 272/287 (94%), Gaps = 2/287 (0%) Query: 1 MPIKKIISRSNSGIHHSTVIDYKKLLTTNKNKPEKSLLVTLKKHGGRNNQGKITVRHQGG 60 M IKKIISRSNSGIH++TVID+KKLLT +K PEKSLLVTLKKH GRNNQGKITVRH GG Sbjct: 1 MAIKKIISRSNSGIHNATVIDFKKLLTNSK--PEKSLLVTLKKHAGRNNQGKITVRHHGG 58 Query: 61 RNKRKYRIIDFKRTHYDNIEATVKSIEYDPNRSCFVSLITYANGAKSYIISPDGIKVGDK 120 R+KRKYR+IDFKR HYDN++ATVKSIEYDPNRSCF+SL+ Y NG K+YIISPDGIKVGD+ Sbjct: 59 RHKRKYRLIDFKRYHYDNLKATVKSIEYDPNRSCFISLLHYQNGVKTYIISPDGIKVGDQ 118 Query: 121 ILASEHPIDIKPGFSMPLAFIPEGTQVHNIELHPKGGGQIARSAGSYARILGQDETGKYV 180 + +S+H IDIK G+ MPLAFIPEGTQVHNIEL+PKGGG+IARSAGSYARILGQDETGKY+ Sbjct: 119 VYSSDHAIDIKLGYCMPLAFIPEGTQVHNIELNPKGGGKIARSAGSYARILGQDETGKYI 178 Query: 181 ILQLLSGETRKFLKECRATVGVVSNLDHNLVVIGKAGRNRHRGIRPTVRGSAMNPNDHPH 240 ILQL+SGETRKFLKECRATVGVVSNLDHNLVVIGKAGR+RH+GIRPTVRGSAMNPNDHPH Sbjct: 179 ILQLISGETRKFLKECRATVGVVSNLDHNLVVIGKAGRSRHKGIRPTVRGSAMNPNDHPH 238 Query: 241 GGGEGRSPVGRDAPRTPWGKRHMGVKTRNMKKASTNLIIRNRKGEQY 287 GGGEGRSPVGRDAPRTPWGKRHMGVKTRNMKK STNLIIRNRKGEQY Sbjct: 239 GGGEGRSPVGRDAPRTPWGKRHMGVKTRNMKKHSTNLIIRNRKGEQY 285 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507908|ref|NP_109857.1| ribosomal protein S19 [Mycoplasma pneumoniae M129] (87 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072818.1| ribosomal protein S19 (rpS19) [Mycoplasma genit... 174 1e-046 >ref|NP_072818.1| ribosomal protein S19 (rpS19) [Mycoplasma genitalium G-37] Length = 87 Score = 174 bits (441), Expect = 1e-046, Method: Compositional matrix adjust. Identities = 82/87 (94%), Positives = 86/87 (98%) Query: 1 MSRSAKKGAFVDAHLLKKVIDMNKQEKKRPIKTWSRRSTIFPEFVGNTFAVHNGKTFINV 60 MSRS+KKGAFVDAHLLKKVI+MNKQ KK+PIKTWSRRSTIFPEFVGNTF+VHNGKTFINV Sbjct: 1 MSRSSKKGAFVDAHLLKKVIEMNKQAKKKPIKTWSRRSTIFPEFVGNTFSVHNGKTFINV 60 Query: 61 YVTDDMVGHKLGEFSPTRNFKQHTANR 87 YVTDDMVGHKLGEFSPTRNFKQHTANR Sbjct: 61 YVTDDMVGHKLGEFSPTRNFKQHTANR 87 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507909|ref|NP_109858.1| ribosomal protein L22 [Mycoplasma pneumoniae M129] (184 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072819.1| ribosomal protein L22 (rpL22) [Mycoplasma genit... 221 3e-060 >ref|NP_072819.1| ribosomal protein L22 (rpL22) [Mycoplasma genitalium G-37] Length = 144 Score = 221 bits (564), Expect = 3e-060, Method: Compositional matrix adjust. Identities = 106/132 (80%), Positives = 116/132 (87%) Query: 26 MIAFAKQFRVRISPQKARLVCQLIVGKKTADAQNILSNTPKKAATLIAKLLNSAIANATN 85 MIAFAKQ+RV ISPQKARLVCQLIVGKK DAQNIL NTPKKAA + KLLNSAI+NATN Sbjct: 1 MIAFAKQYRVHISPQKARLVCQLIVGKKINDAQNILLNTPKKAAYFLTKLLNSAISNATN 60 Query: 86 NHGMNGDALYVFECVANQGPSMKRTIPRAKGSSNMITKRSSNLVVKLSDNPNERQELIKQ 145 NHGM+GD LYVFECVANQGPSMKRTI RAKGS +++TKRSSNLV+KLSDNPNER+ L+ Q Sbjct: 61 NHGMSGDLLYVFECVANQGPSMKRTIARAKGSGSVLTKRSSNLVIKLSDNPNERKLLLTQ 120 Query: 146 QKALVKKRVEGQ 157 QK LVKKR G Sbjct: 121 QKELVKKRTMGH 132 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507910|ref|NP_109859.1| ribosomal protein S3 [Mycoplasma pneumoniae M129] (273 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072820.1| ribosomal protein S3 (rpS3) [Mycoplasma genital... 413 e-117 >ref|NP_072820.1| ribosomal protein S3 (rpS3) [Mycoplasma genitalium G-37] Length = 268 Score = 413 bits (1061), Expect = e-117, Method: Compositional matrix adjust. Identities = 203/269 (75%), Positives = 223/269 (82%), Gaps = 4/269 (1%) Query: 1 MGQKVNSNGLRFGINKNWISRWTANSHAQTAKWLIEDEKIRNLFFVNYRNAQVSNVEIER 60 MGQKVNSNGLRFGINKNWISRWTA+S+ QTA WL++DEKIRNLFF+NYRNAQVSNVEIER Sbjct: 1 MGQKVNSNGLRFGINKNWISRWTASSNQQTATWLVQDEKIRNLFFINYRNAQVSNVEIER 60 Query: 61 TQATVDVFVYAAQPAFLIGSENKNXXXXXXXXXXXXGRTTNLDLTINEIGSPMLSARIIA 120 TQ TVDV+VYAAQPA LIGSENKN GR LDLTINEIGSPMLS+RIIA Sbjct: 61 TQTTVDVYVYAAQPALLIGSENKNIQKITKMIQIIVGRKIKLDLTINEIGSPMLSSRIIA 120 Query: 121 RDLANAIEARVPLRTAMRQSLIKVLKAGANGIKVLVSGRLNGAEIARDKMYIEGNMPLST 180 RD+ANAIE RVPLR+AMRQ+L KVLKAGANGIKVLVSGRLNGAEIARDKMYIEGNMPLST Sbjct: 121 RDIANAIENRVPLRSAMRQALTKVLKAGANGIKVLVSGRLNGAEIARDKMYIEGNMPLST 180 Query: 181 LRADIDYALEKAQTTYGVIGVKVWINRGMIYTKGLNRTPAHILHXXXXXXXXXXXXXXHF 240 LRADIDYA EKA+TTYG+IGVKVWINRGMIY KGLNRTPAHILH + Sbjct: 181 LRADIDYAFEKAKTTYGIIGVKVWINRGMIYAKGLNRTPAHILHPQKKQLKTPTIKKTN- 239 Query: 241 NQGQVLSANKLTGSDVETSSIQALTKPNK 269 V++ KLTGSD+ET+S++ALT N+ Sbjct: 240 ---SVIAKQKLTGSDIETASLKALTDNNQ 265 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507911|ref|NP_109860.1| ribosomal protein L16 [Mycoplasma pneumoniae M129] (139 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072821.1| ribosomal protein L16 (rpL16) [Mycoplasma genit... 238 2e-065 >ref|NP_072821.1| ribosomal protein L16 (rpL16) [Mycoplasma genitalium G-37] Length = 138 Score = 238 bits (607), Expect = 2e-065, Method: Compositional matrix adjust. Identities = 115/138 (83%), Positives = 119/138 (86%) Query: 1 MLQPKRTKYRKPHNVSYEGKAKGNSYVAFGEYGLVATKGNWXXXXXXXXXXXXXXKCLGK 60 MLQPKRTKYRKPHNVSYEG KGN YVAFGEYG+VATKGNW KCLGK Sbjct: 1 MLQPKRTKYRKPHNVSYEGHTKGNGYVAFGEYGIVATKGNWIDARAIESARVAISKCLGK 60 Query: 61 TGKMWIRIFPHMSKTKKPLEVRMGSGKGNPEFWVAVVKQGTVMFEVANIPESQMIKALTR 120 TGKMWIRIFPHMSKTKKPLEVRMGSGKGNPEFWVAVVK+GTVMFEVANIPE QMIKALTR Sbjct: 61 TGKMWIRIFPHMSKTKKPLEVRMGSGKGNPEFWVAVVKKGTVMFEVANIPEQQMIKALTR 120 Query: 121 AGHKLPVTWKILKREEVS 138 AGHKLPVTWK++KREE S Sbjct: 121 AGHKLPVTWKLMKREENS 138 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507912|ref|NP_109861.1| ribosomal protein L29 [Mycoplasma pneumoniae M129] (111 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072822.1| ribosomal protein L29 (rpL29) [Mycoplasma genit... 128 2e-032 >ref|NP_072822.1| ribosomal protein L29 (rpL29) [Mycoplasma genitalium G-37] Length = 200 Score = 128 bits (321), Expect = 2e-032, Method: Compositional matrix adjust. Identities = 64/91 (70%), Positives = 72/91 (79%) Query: 1 MTVAKELRQKSSEELVKLVIKLKGELLEYRFKLAHGELDKPHLINQXXXXXXXXXXXXXE 60 MT+AKEL+QKS+EELVKLVIKLKGELLEYRFKLAHGELDKPHLI + E Sbjct: 1 MTIAKELKQKSNEELVKLVIKLKGELLEYRFKLAHGELDKPHLIAKVRKLLAVVLTILTE 60 Query: 61 RKLNWQEEQAKYKLLTKKTNEAAVNAWKQHL 91 RKLNWQ E+ KYKLL++KTNE VN+WKQ L Sbjct: 61 RKLNWQVEKDKYKLLSRKTNELIVNSWKQKL 91 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507913|ref|NP_109862.1| ribosomal protein S17 [Mycoplasma pneumoniae M129] (85 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072823.1| ribosomal protein S17 (rpS17) [Mycoplasma genit... 140 2e-036 >ref|NP_072823.1| ribosomal protein S17 (rpS17) [Mycoplasma genitalium G-37] Length = 85 Score = 140 bits (353), Expect = 2e-036, Method: Compositional matrix adjust. Identities = 68/85 (80%), Positives = 75/85 (88%) Query: 1 MKRNQRKVLIGIVKSTKNAKTATVQVESRFKHPLYHKSVVRHKKYQAHNEGEVLAKDGDK 60 MKRNQRK LIG V STKNAKTATV+V SRFKHPLYHKSV+RHKKY HN GE++A DGD+ Sbjct: 1 MKRNQRKQLIGTVVSTKNAKTATVKVTSRFKHPLYHKSVIRHKKYHVHNFGELVANDGDR 60 Query: 61 VQIVETRPLSATKRFRIAKIIERAK 85 VQI+ETRPLSA KR+RI KIIERAK Sbjct: 61 VQIIETRPLSALKRWRIVKIIERAK 85 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507914|ref|NP_109863.1| ribosomal protein L14 [Mycoplasma pneumoniae M129] (122 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072824.1| ribosomal protein L14 (rpL14) [Mycoplasma genit... 234 2e-064 >ref|NP_072824.1| ribosomal protein L14 (rpL14) [Mycoplasma genitalium G-37] Length = 122 Score = 234 bits (597), Expect = 2e-064, Method: Compositional matrix adjust. Identities = 116/122 (95%), Positives = 120/122 (98%) Query: 1 MVSFMTRLNVADNTGAKQVGIIKVLGSTRKRYAFLGDVVVVSVKDAIPSGMVKKGQVLRA 60 MVSFMTRLNVADNTGAKQVGIIKVLG+T KRYAFLGDVVVVSVKDAIP+GMVKKGQVLRA Sbjct: 1 MVSFMTRLNVADNTGAKQVGIIKVLGATYKRYAFLGDVVVVSVKDAIPNGMVKKGQVLRA 60 Query: 61 VIVRTKKGQQRKDGTHLKFDDNACVLIKEDKSPRGTRIFGPVARELRERGYNKILSLAVE 120 VIVRTKKGQQR+DGTHLKF DNACVLIKEDKSPRGTRIFGPVARELRE+GYNKILSLAVE Sbjct: 61 VIVRTKKGQQRQDGTHLKFHDNACVLIKEDKSPRGTRIFGPVARELREKGYNKILSLAVE 120 Query: 121 VV 122 VV Sbjct: 121 VV 122 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507915|ref|NP_109864.1| ribosomal protein L24 [Mycoplasma pneumoniae M129] (111 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072825.1| ribosomal protein L24 (rpL24) [Mycoplasma genit... 144 3e-037 >ref|NP_072825.1| ribosomal protein L24 (rpL24) [Mycoplasma genitalium G-37] Length = 108 Score = 144 bits (362), Expect = 3e-037, Method: Compositional matrix adjust. Identities = 77/111 (69%), Positives = 93/111 (83%), Gaps = 3/111 (2%) Query: 1 MQRIKKGDKVVVITGKNKGGSGIVLKIMPARQQAIVEGLNKVTRHKKKDQTTKRAAKQST 60 MQRI+KGDKVVVITGKNKGGSGIVLK++ + +AIVEG+NKVT H KK+Q KR+ + T Sbjct: 1 MQRIRKGDKVVVITGKNKGGSGIVLKVLTKQNKAIVEGINKVTVH-KKEQVNKRS--KQT 57 Query: 61 GKVQQEAPIFLSKLALFDQKAKQQTIGKIKYVMDPKTNKKTRVFKKSNNTL 111 +EAP+ L+KLALFDQKAKQQTIGKIKY +DPKT +KTRVFKK+NN + Sbjct: 58 NPTTKEAPLPLNKLALFDQKAKQQTIGKIKYQIDPKTKQKTRVFKKTNNAI 108 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507916|ref|NP_109865.1| ribosomal protein L5 [Mycoplasma pneumoniae M129] (180 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072826.1| ribosomal protein L5 (rpL5) [Mycoplasma genital... 295 1e-082 >ref|NP_072826.1| ribosomal protein L5 (rpL5) [Mycoplasma genitalium G-37] Length = 180 Score = 295 bits (756), Expect = 1e-082, Method: Compositional matrix adjust. Identities = 137/165 (83%), Positives = 154/165 (93%) Query: 1 MNNLKAHYQKTIAKELQKSFAFSSIMQVPRLEKIVINMGVGDAIRDSKFLESALNELHLI 60 MNNL+ Y+ + +LQ+ FSSIMQVP+L KIV+NMGVGDAIRD+KFLESALNELHLI Sbjct: 1 MNNLEKTYKTELVNQLQQQLGFSSIMQVPKLTKIVVNMGVGDAIRDNKFLESALNELHLI 60 Query: 61 SGQKPVATKAKNAISTYKLRAGQLIGCKVTLRGERMWAFLEKLIYVALPRVRDFRGLSLK 120 +GQKPVATKAKNAISTYKLRAGQLIGCKVTLR ++MW+FLEKLIY+ALPRVRDFRGLSL+ Sbjct: 61 TGQKPVATKAKNAISTYKLRAGQLIGCKVTLRNKKMWSFLEKLIYIALPRVRDFRGLSLR 120 Query: 121 SFDGRGNYTIGIKEQIIFPEIVYDDIKRIRGFDVTLVTSTNKDSE 165 SFDG+GNYTIGIKEQIIFPEIVYDDIKRIRGFD+T+VTSTNKDSE Sbjct: 121 SFDGKGNYTIGIKEQIIFPEIVYDDIKRIRGFDITIVTSTNKDSE 165 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507917|ref|NP_109866.1| ribosomal protein S14 [Mycoplasma pneumoniae M129] (61 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072827.1| ribosomal protein S14 (rpS14) [Mycoplasma genit... 111 1e-027 >ref|NP_072827.1| ribosomal protein S14 (rpS14) [Mycoplasma genitalium G-37] Length = 61 Score = 111 bits (277), Expect = 1e-027, Method: Compositional matrix adjust. Identities = 55/61 (90%), Positives = 57/61 (93%) Query: 1 MAKKSLKVKQTRIPKFAVRAYTRCQRCGRARAVLSHFGVCRLCFRELAYAGAIPGVKKAS 60 MAKKSLKVKQ+R KF+VR YTRC RCGRARAVLSHFGVCRLCFRELAYAGAIPGVKKAS Sbjct: 1 MAKKSLKVKQSRPNKFSVRDYTRCLRCGRARAVLSHFGVCRLCFRELAYAGAIPGVKKAS 60 Query: 61 W 61 W Sbjct: 61 W 61 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507918|ref|NP_109867.1| ribosomal protein S8 [Mycoplasma pneumoniae M129] (142 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072828.1| ribosomal protein S8 (rpS8) [Mycoplasma genital... 249 9e-069 >ref|NP_072828.1| ribosomal protein S8 (rpS8) [Mycoplasma genitalium G-37] Length = 141 Score = 249 bits (636), Expect = 9e-069, Method: Compositional matrix adjust. Identities = 122/134 (91%), Positives = 130/134 (97%) Query: 9 KAHFDPVADLLTKINNARKAKLMTVTTIASKLKIAILEILVKEGYLANFQVLENKSKTKR 68 KAHFDPV+DL TKINNARKAKL+TVTTIASKLKIAILEIL+KEGYLAN+QVLENK+KTK+ Sbjct: 8 KAHFDPVSDLFTKINNARKAKLLTVTTIASKLKIAILEILIKEGYLANYQVLENKTKTKK 67 Query: 69 IVTFNLKYTQRRIPSINGVKQISKPGLRIYRPFEKLPLVLNGLGIAIISTSDGVMTDKVA 128 +V+F LKYTQRRI SINGVKQISKPGLRIYR FEKLPLVLNGLGIAIISTSDGVMTDKVA Sbjct: 68 LVSFTLKYTQRRICSINGVKQISKPGLRIYRSFEKLPLVLNGLGIAIISTSDGVMTDKVA 127 Query: 129 RLKKIGGEILAYVW 142 RLKKIGGEILAYVW Sbjct: 128 RLKKIGGEILAYVW 141 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507919|ref|NP_109868.1| ribosomal protein L6 [Mycoplasma pneumoniae M129] (184 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072829.1| ribosomal protein L6 (rpL6) [Mycoplasma genital... 278 3e-077 >ref|NP_072829.1| ribosomal protein L6 (rpL6) [Mycoplasma genitalium G-37] Length = 184 Score = 278 bits (711), Expect = 3e-077, Method: Compositional matrix adjust. Identities = 137/184 (74%), Positives = 160/184 (86%) Query: 1 MSKIGNRTITLDPAKVNLNFQKDHIAVKGPLGQIELKLPPNLPLKFELKDNNLQITRNNE 60 MSKIGNR+I +DP+KV+L + +KGPLG+ +KLP NLPLKF ++++ +++T NN Sbjct: 1 MSKIGNRSIKIDPSKVSLMQTTTLLTIKGPLGENTIKLPKNLPLKFVVENDTIKVTNNNN 60 Query: 61 LKQSKIFHGTYNALITNAIIGVTQGFEKKLRLVGVGYRANVEGETLNLQLGYSHPIKEKI 120 LKQ+KI HGT+NAL+ NA+IGVT+GFEKKL LVGVGYRANVEG+ LNLQLGYSHPIKE I Sbjct: 61 LKQTKILHGTFNALVNNAVIGVTKGFEKKLILVGVGYRANVEGQFLNLQLGYSHPIKELI 120 Query: 121 PKGLTVKVEKNTEITISGISKELVGQFATEVRKWRKPEPYKGKGVLYFDEVIVRKAGKTA 180 P LTVKVEKNTEITISGI KELVGQFATE+RKWRKPEPYKGKGVLYF+EVIVRK GKTA Sbjct: 121 PNQLTVKVEKNTEITISGIKKELVGQFATEIRKWRKPEPYKGKGVLYFNEVIVRKQGKTA 180 Query: 181 EGKK 184 EGKK Sbjct: 181 EGKK 184 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507920|ref|NP_109869.1| ribosomal protein L18 [Mycoplasma pneumoniae M129] (116 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072830.1| ribosomal protein L18 (rpL18) [Mycoplasma genit... 129 1e-032 >ref|NP_072830.1| ribosomal protein L18 (rpL18) [Mycoplasma genitalium G-37] Length = 115 Score = 129 bits (323), Expect = 1e-032, Method: Compositional matrix adjust. Identities = 65/97 (67%), Positives = 76/97 (78%) Query: 3 TRTEQRRLRHKRIVKKIRATNHDNRVVLMVIKSLNHISVQAWDFSQNIVXXXXXXXXXXX 62 TR ++RR+RHKRIVKKIR TN +NRVVL+VIKSL +ISVQAWDFS+N+V Sbjct: 2 TRNDKRRIRHKRIVKKIRLTNLNNRVVLIVIKSLKNISVQAWDFSKNVVLTSSSSLQLKL 61 Query: 63 XNGNKDNAKLVGQDIADKLVKLKLTNVVFDTGGSKYH 99 NGNK+NAKLVG DIA KL+KL +VVFDTGGSKYH Sbjct: 62 KNGNKENAKLVGMDIATKLIKLNQKDVVFDTGGSKYH 98 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507921|ref|NP_109870.1| ribosomal protein S5 [Mycoplasma pneumoniae M129] (219 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072831.1| ribosomal protein S5 (rpS5) [Mycoplasma genital... 253 1e-069 >ref|NP_072831.1| ribosomal protein S5 (rpS5) [Mycoplasma genitalium G-37] Length = 211 Score = 253 bits (645), Expect = 1e-069, Method: Compositional matrix adjust. Identities = 138/217 (63%), Positives = 155/217 (71%), Gaps = 9/217 (4%) Query: 5 NQKANQGNGLQTTNLQAHAQRKHNLRPSSEGIKKAVSKKEXXXXXXXXXXXXFQKPAF-- 62 N + GL T+ L+ + KHNL+PSSE IKKAVSKKE FQK F Sbjct: 2 NDQKTTNTGLLTSTLKT--KPKHNLKPSSEAIKKAVSKKEGHYKNKR-----FQKHNFNN 54 Query: 63 KSEFEERIVKLKRISKTTKGGRNMRFSVLVVVGNRKGKIGYGIAKALEVPNXXXXXXXXX 122 KSEFEERIVKLKRISKTTKGGRNMRFSVLVVVGN+KGK+GYGIAKALEVP Sbjct: 55 KSEFEERIVKLKRISKTTKGGRNMRFSVLVVVGNKKGKVGYGIAKALEVPLAIKKAIKKA 114 Query: 123 HNSLHTIEIHKGSIYHEVIGRSGASRVLLKPXXXXXXXXXXXXXXXXXXXXXYSDIYTKN 182 HNS+HT+EIHKGSIYHEVIGR GAS+VLLKP +SDIYTKN Sbjct: 115 HNSIHTVEIHKGSIYHEVIGRKGASKVLLKPAPLGTGIIAGGAIRAIVELAGFSDIYTKN 174 Query: 183 LGRNTPINMIHATMDGILKQLSPRRVAILRNKNLNEL 219 LGRNTPINMIHATMDGILKQLSP++VA+LRNK +++L Sbjct: 175 LGRNTPINMIHATMDGILKQLSPKKVALLRNKPISDL 211 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507922|ref|NP_109871.1| ribosomal protein L15 [Mycoplasma pneumoniae M129] (151 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072832.1| ribosomal protein L15 (rpl15) [Mycoplasma genit... 222 1e-060 >ref|NP_072832.1| ribosomal protein L15 (rpl15) [Mycoplasma genitalium G-37] Length = 150 Score = 222 bits (565), Expect = 1e-060, Method: Compositional matrix adjust. Identities = 109/149 (73%), Positives = 128/149 (85%) Query: 1 MELNQLKSVPKARNHKTKTLGRGHGSGLGKTSGRGQKGQKARKSGLTRPGFEGGQTPLYR 60 MEL+QLKSV K+RNHK+K +GRGHGSGLGKTS RGQKGQKARKSGLTR GFEGGQTPLYR Sbjct: 1 MELHQLKSVSKSRNHKSKVVGRGHGSGLGKTSSRGQKGQKARKSGLTRLGFEGGQTPLYR 60 Query: 61 RLPKFGNARKGFLKQEWVVLNLNKIAKLKLDKINRASLIEKQVISAKSQLPIKLIGHTKL 120 RLPK+G A KG LK+ WVVLNLNK+AKL L + RA+LIEK+VIS K+ LP+KLIG+TKL Sbjct: 61 RLPKYGVANKGILKKRWVVLNLNKVAKLNLKTVTRATLIEKKVISKKNNLPLKLIGNTKL 120 Query: 121 EKPLHFEVHKVSKQALKAVENANGSVKLL 149 P+HFEV K+SK AL AV+ + GSVK++ Sbjct: 121 TTPIHFEVQKISKNALNAVQTSKGSVKII 149 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507923|ref|NP_109872.1| preprotein translocase subunit SecY [Mycoplasma pneumoniae M129] (477 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072833.1| preprotein translocase (secY) [Mycoplasma genit... 712 0.0 >ref|NP_072833.1| preprotein translocase (secY) [Mycoplasma genitalium G-37] Length = 475 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/468 (78%), Positives = 403/468 (86%) Query: 10 KQKQNFGQRLFTLLRNRDFMISFLITVVLLVLFRVLAIIPLPGIQVNQTGLXXXXXXXXX 69 KQK NFGQRL TLL+NRDFM+S ++TVVLL+LFRVLAIIPLPGI++N++ L Sbjct: 8 KQKLNFGQRLLTLLQNRDFMVSLVLTVVLLILFRVLAIIPLPGIRINESVLDRNSNDFFS 67 Query: 70 XXXXXXXXXXXXXXXXAVGISPYISAQIVMQLLSTDLIPPLSKLVNSGEVGRRKIEMITR 129 AVGISPYISAQI+MQLLSTDLIPPLSKLVNSGEVGRRKIEMITR Sbjct: 68 LFNLLGGGGLNQLSLFAVGISPYISAQIIMQLLSTDLIPPLSKLVNSGEVGRRKIEMITR 127 Query: 130 IITLPFALVQSFAVIQIATNSGGGSSPITLKNNGSDFVAFYIIAMTAGTYLSVFLGDTIS 189 IITLPFALVQ+FAVIQIATN+G GSSPI+L N+GS+F+AFYIIAMTAGTY++VFLGDTIS Sbjct: 128 IITLPFALVQAFAVIQIATNAGTGSSPISLANSGSEFIAFYIIAMTAGTYMAVFLGDTIS 187 Query: 190 KKGIGNGITLLILSGILAQLPEGFIAAYSVLSGVVVTINATLTTAISFFIYFMAFVTLLF 249 KKG+GNGITLLILSGIL+QLP+GFIAAY+VLSG+V+T+ LT AISFFIYF+AF+ LLF Sbjct: 188 KKGVGNGITLLILSGILSQLPQGFIAAYNVLSGIVITLTPQLTAAISFFIYFLAFLVLLF 247 Query: 250 ATTFITQETRKIPIQQSGQGLVTESSALPYLPIKVNSAGVIPVIFASSIMSIPVTIAQFQ 309 ATTFITQ TRKIPIQQSGQGLV+E LPYLPIKVN+AGVIPVIFASSIMSIPVTIAQFQ Sbjct: 248 ATTFITQATRKIPIQQSGQGLVSEVKTLPYLPIKVNAAGVIPVIFASSIMSIPVTIAQFQ 307 Query: 310 PQTESRWFVEDYLSLSKPTGIVLYGILVILFSFFYSYIQINPERLAKNFEKSGRFIPGIR 369 PQTESRWFVEDYLSLS P GI LY +LVILFSFFYSYIQINPERLAKNFEKSGRFIPGIR Sbjct: 308 PQTESRWFVEDYLSLSTPVGIFLYAVLVILFSFFYSYIQINPERLAKNFEKSGRFIPGIR 367 Query: 370 PGKDTEKHIARVLVRINFIGAPFLTVIAIIPYIVSALIHLPNSLSLXXXXXXXXXXXXXE 429 PG DTEKHIARVL+RINFIGAPFLTVIAIIPYIVS I LPNSLSL E Sbjct: 368 PGNDTEKHIARVLIRINFIGAPFLTVIAIIPYIVSYFIRLPNSLSLGGTGIIIIVTAVVE 427 Query: 430 FMSALRSAATATNYQQLRRNLAIEVQKTAQQDKEEQLRAETPGIGNLW 477 F+SALRSAATATNYQQLRRNLAIEVQ+TA+QD EQL+ E PGIGNLW Sbjct: 428 FISALRSAATATNYQQLRRNLAIEVQQTAKQDSLEQLQKEAPGIGNLW 475 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507924|ref|NP_109873.1| adenylate kinase [Mycoplasma pneumoniae M129] (215 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072834.1| adenylate kinase (adk) [Mycoplasma genitalium G... 186 2e-049 >ref|NP_072834.1| adenylate kinase (adk) [Mycoplasma genitalium G-37] Length = 214 Score = 186 bits (471), Expect = 2e-049, Method: Compositional matrix adjust. Identities = 89/195 (45%), Positives = 127/195 (65%), Gaps = 2/195 (1%) Query: 5 NKFLFLGAPGVGKGTLAKQVANTTGLFHLSTGDIFRSVMQEQGALSQTLAHYMNQGLYVP 64 NKF+ LG PG GKGT+ K ++ TT L H+++GD+FR ++ Q + + +A ++QG YV Sbjct: 6 NKFIILGPPGAGKGTVCKLLSKTTKLVHIASGDLFREAIKNQSVIGRKIAAIISQGGYVD 65 Query: 65 DELTNQTFWHFVTTHQNELHKGFILDGYPRTLNQLEFLQSKLQLDQVFHLKLSDPQVLVA 124 D TNQ + ++TT N L GFILDGYPRT NQL+FL KL +D VF L +SD L+ Sbjct: 66 DATTNQLVYEYITT--NPLPNGFILDGYPRTENQLDFLNIKLTIDMVFELVVSDLNKLIT 123 Query: 125 RILNRLVCPSCGSVYNKQSKPPLKANQCDRCHATLQARNDDTEAVILKRLTLYEDTVKPL 184 RI NR++C +C SVYN + PL N CD+C A L R+DD +AV+ R+ LY+ T++P+ Sbjct: 124 RIDNRVICNNCNSVYNLLFQKPLVENSCDQCSAKLVKRSDDNKAVVKARMELYQQTIQPI 183 Query: 185 IEAFTKQGILTVIEA 199 F + +L I+ Sbjct: 184 HTYFFNKQLLVQIDC 198 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507925|ref|NP_109874.1| methionine amino peptidase [Mycoplasma pneumoniae M129] (248 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072835.1| methionine aminopeptidase (map) [Mycoplasma gen... 352 1e-099 >ref|NP_072835.1| methionine aminopeptidase (map) [Mycoplasma genitalium G-37] Length = 248 Score = 352 bits (904), Expect = 1e-099, Method: Compositional matrix adjust. Identities = 163/248 (65%), Positives = 198/248 (79%) Query: 1 MVYLKSAREVEQIRQACKIFQEAKAYFTIERLLGKSLTAIDQALKQFIESKGATCAFHKY 60 M+YLKSA EV I++AC IF+ KAYFTIE+LLGK L ID+ +KQFIE K A CAFH Y Sbjct: 1 MIYLKSANEVAGIKKACAIFKAVKAYFTIEKLLGKKLVTIDRLIKQFIEQKQAKCAFHGY 60 Query: 61 QNFPGFNCLSLNETVIHGIADNRVFGVKDKLTLDIGINLNGYICDAAFTVLGPKAPEPMQ 120 FPGFNCLSLN+TVIHG+AD VF DKLTLDIGI+ +GY+CDAAFT+LG KA Sbjct: 61 LGFPGFNCLSLNQTVIHGVADQTVFKDSDKLTLDIGIDYHGYLCDAAFTLLGNKADPKAV 120 Query: 121 TLLEVTEACFTAVVEPQLRPNNPTGNVSHAIQTYFESKGYYLLKQFGGHGCGIKVHEEPL 180 LL E F+ V+EP+L NNP GN+S+AIQTYFE+KGY+L+K+FGGHGCGIK+HE+PL Sbjct: 121 KLLNDVEQAFSKVIEPELFVNNPIGNLSNAIQTYFENKGYFLVKEFGGHGCGIKIHEDPL 180 Query: 181 ILNYGKPDTGTKLEPGMVLCIEPMVMTDSDAMVMHNNSWNVLTPKSRYNCHVEQMYVITT 240 ILN+G+ + G +L+ GMV+CIEPMVMTDS + M N+WNVLT KS++NCHVEQMY IT Sbjct: 181 ILNWGEKNQGVRLQEGMVICIEPMVMTDSSEITMAANNWNVLTLKSKFNCHVEQMYHITN 240 Query: 241 SGFECLTN 248 +GFECLTN Sbjct: 241 NGFECLTN 248 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507926|ref|NP_109875.1| initiation factor 1 [Mycoplasma pneumoniae M129] (78 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072836.1| translation initiation factor 1 (infA) [Mycopla... 121 1e-030 >ref|NP_072836.1| translation initiation factor 1 (infA) [Mycoplasma genitalium G-37] Length = 70 Score = 121 bits (303), Expect = 1e-030, Method: Compositional matrix adjust. Identities = 58/69 (84%), Positives = 64/69 (92%) Query: 10 KQDKLVLTGKILEIIHGDKFRVLLENNVEVDAHLAGKMRMRRLRILPGDLVEVEFSPYDL 69 K DKL LTGKILEIIHGDK+RV+LENNVEVDAHLAGKM+M+R +ILPGD+VEVEFSPYDL Sbjct: 2 KNDKLFLTGKILEIIHGDKYRVMLENNVEVDAHLAGKMKMKRTKILPGDVVEVEFSPYDL 61 Query: 70 KLGRIIGRK 78 KLGRI RK Sbjct: 62 KLGRITQRK 70 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507927|ref|NP_109876.1| ribosomal protein L36 [Mycoplasma pneumoniae M129] (37 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072837.1| ribosomal protein L36 (rpL36) [Mycoplasma genit... 68 2e-014 >ref|NP_072837.1| ribosomal protein L36 (rpL36) [Mycoplasma genitalium G-37] Length = 37 Score = 68.2 bits (165), Expect = 2e-014, Method: Compositional matrix adjust. Identities = 34/37 (91%), Positives = 37/37 (100%) Query: 1 MKVRASVKPICKDCKIIKRHQIVRVICKTQKHKQRQG 37 MKVRASVKPICKDCKIIKRH+I+RVICKT+KHKQRQG Sbjct: 1 MKVRASVKPICKDCKIIKRHRILRVICKTKKHKQRQG 37 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507928|ref|NP_109877.1| ribosomal protein S13 [Mycoplasma pneumoniae M129] (124 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072838.1| ribosomal protein S13 (rpS13) [Mycoplasma genit... 226 6e-062 >ref|NP_072838.1| ribosomal protein S13 (rpS13) [Mycoplasma genitalium G-37] Length = 124 Score = 226 bits (576), Expect = 6e-062, Method: Compositional matrix adjust. Identities = 110/124 (88%), Positives = 118/124 (95%) Query: 1 MARILGIDIPNQKRIEIALTYIFGIGLSRSQAILKQANINPDKRVKDLTEEEFVAIRNVA 60 MARILGIDIPNQKRIEIALTYIFGIGLS ++ ILK+A INPDKRVKDL+EEE VAIRN A Sbjct: 1 MARILGIDIPNQKRIEIALTYIFGIGLSSAKTILKKAKINPDKRVKDLSEEELVAIRNAA 60 Query: 61 SAYKIEGDLRREIALNIKHLSEIGAWRGLRHRKNLPVRGQRTRTNARTRKGPRKTVANKK 120 S YKIEGDLRREIALNIKHL+EIG+W+G+RHRKNLPVRGQRTRTNARTRKGPRKTVANKK Sbjct: 61 SGYKIEGDLRREIALNIKHLTEIGSWKGIRHRKNLPVRGQRTRTNARTRKGPRKTVANKK 120 Query: 121 IESK 124 IESK Sbjct: 121 IESK 124 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507929|ref|NP_109878.1| ribosomal protein S11 [Mycoplasma pneumoniae M129] (121 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072839.1| ribosomal protein S11 (rpS11) [Mycoplasma genit... 210 4e-057 >ref|NP_072839.1| ribosomal protein S11 (rpS11) [Mycoplasma genitalium G-37] Length = 131 Score = 210 bits (534), Expect = 4e-057, Method: Compositional matrix adjust. Identities = 100/115 (86%), Positives = 110/115 (95%) Query: 1 MAKKKKINVSSGIIHVSCSPNNTIVSASDPGGNVLCWASSGTMGFKGSRKKTPYSAGIAA 60 MAKKKKINV SG+IHVSCSPNNTIVSA+DP GNVLCWASSGT+GFKG RKKTPYSAG+AA Sbjct: 1 MAKKKKINVPSGLIHVSCSPNNTIVSATDPSGNVLCWASSGTVGFKGFRKKTPYSAGVAA 60 Query: 61 DKVAKTVKEMGMATVKLFVKGTGRGKDTAIRSFANAGLSITEINEKTPIPHNGCK 115 DKVAKTVKEMGM +VK+++KGTGRGKDT IRSFANAG++ITEINEKTPIPHNGCK Sbjct: 61 DKVAKTVKEMGMGSVKMYLKGTGRGKDTTIRSFANAGITITEINEKTPIPHNGCK 115 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507930|ref|NP_109879.1| RNA polymerase alpha core subunit [Mycoplasma pneumoniae M129] (327 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072840.1| DNA-directed RNA polymerase, subunit alpha (rpo... 573 e-166 >ref|NP_072840.1| DNA-directed RNA polymerase, subunit alpha (rpoA) [Mycoplasma genitalium G-37] Length = 328 Score = 573 bits (1477), Expect = e-166, Method: Compositional matrix adjust. Identities = 284/328 (86%), Positives = 303/328 (92%), Gaps = 1/328 (0%) Query: 1 MEKFLKYEIKVNNEQARANPN-YGIFEVGPLESGFVITIGNAMRRVLLSCIPGASVFALS 59 MEKFLKYEIKVNN Q YGIFEV PLESGF ITIGNAMRRVLLSCIPGASVFA++ Sbjct: 1 MEKFLKYEIKVNNNQPTNTNPNYGIFEVAPLESGFGITIGNAMRRVLLSCIPGASVFAIA 60 Query: 60 ISGAKQEFAAVEGMKEDVTEVVLNFKQLVVKISDLLFEDGEMVEPPLERWPLLTVTAEKA 119 ISG KQEF+ VEG+ EDVTE+VLNFKQLVV+ISDLLFEDGEM+EPPLERWP+L VTAEK Sbjct: 61 ISGVKQEFSNVEGVLEDVTEMVLNFKQLVVRISDLLFEDGEMIEPPLERWPVLKVTAEKK 120 Query: 120 GPVYAKDLECPAGFEVVNKDLYLFSLQTDKKVTVNVYVKQGRGFVTFLENREMINSLGII 179 G VYAKDLECPAGFEV+NKDLYLFSLQ D K+TV+VYVKQGRGF +FLENRE+INSLGII Sbjct: 121 GAVYAKDLECPAGFEVINKDLYLFSLQKDMKLTVSVYVKQGRGFTSFLENRELINSLGII 180 Query: 180 ATDSNFSPVLHCGYEVQELKTSKQKITDHLTFKIATNGAISAVDAFAMAAKILIEHLNPI 239 ATD+NFSPVLHCGYEVQE+KTSKQK+TDHLTFKIATNGAI AVDAFAMAAKILIEHLNPI Sbjct: 181 ATDANFSPVLHCGYEVQEVKTSKQKLTDHLTFKIATNGAIKAVDAFAMAAKILIEHLNPI 240 Query: 240 VNVNESIKALNIIQEKAEERRVRSFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSLAD 299 V+VNESIK L IIQEKAEER+V+SFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSL D Sbjct: 241 VSVNESIKNLTIIQEKAEERKVKSFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSLTD 300 Query: 300 IREIRNLGKKSEREIIKKVHELGLKLRS 327 IREIRNLGKKSEREIIKKV ELGLK RS Sbjct: 301 IREIRNLGKKSEREIIKKVQELGLKFRS 328 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507931|ref|NP_109880.1| ribosomal protein L17 [Mycoplasma pneumoniae M129] (124 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072841.1| ribosomal protein L17 (rpL17) [Mycoplasma genit... 208 2e-056 >ref|NP_072841.1| ribosomal protein L17 (rpL17) [Mycoplasma genitalium G-37] Length = 123 Score = 208 bits (529), Expect = 2e-056, Method: Compositional matrix adjust. Identities = 100/121 (82%), Positives = 110/121 (90%) Query: 1 MSYINKPGKTSAWRVMTVRQQVSAVLAYGKIETTLKKAKNTQKRLDKLITLAKVDNFNNR 60 MSYINK GKT+AWRVMTVRQQVSAVL+YGKI+TTLKKAKNTQKRL+K+IT+AKVDNFNNR Sbjct: 1 MSYINKEGKTTAWRVMTVRQQVSAVLSYGKIQTTLKKAKNTQKRLEKIITIAKVDNFNNR 60 Query: 61 RQVKKWLLNTNLFDVDQLMDHLFSKVAPKYEKTPGGYSRVLKLGPRRGDATEMAILQLTD 120 R VKKWLLNTN DVDQL +HLF KVAP++ K GGYSRVLKLG RRGD+TEMAILQL D Sbjct: 61 RAVKKWLLNTNSLDVDQLTNHLFKKVAPRFLKRNGGYSRVLKLGVRRGDSTEMAILQLID 120 Query: 121 A 121 A Sbjct: 121 A 121 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507932|ref|NP_109881.1| cobalt transport ATP-binding protein [Mycoplasma pneumoniae M129] (274 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 448 e-128 ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasm... 145 3e-037 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 144 1e-036 ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasm... 97 2e-022 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 92 5e-021 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 91 1e-020 ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasm... 89 7e-020 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 89 7e-020 ref|NP_072781.1| galactoside ABC transporter, ATP-binding protei... 88 1e-019 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 83 3e-018 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 82 8e-018 ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasm... 75 1e-015 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 70 2e-014 ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasm... 69 8e-014 ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding prote... 62 5e-012 ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding prote... 61 1e-011 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 448 bits (1152), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/274 (79%), Positives = 245/274 (89%), Gaps = 1/274 (0%) Query: 1 MLNTNKQAAASFQGVYFSYSELPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLK 60 ML T KQAA SF V FSY+ELPLIR LSF V+EGEYVCIVGHNGSGKSTISKLLTGLLK Sbjct: 1 MLPT-KQAACSFINVAFSYNELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLK 59 Query: 61 PQAGTIKIFGKTISSENVTYLRNHIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMK 120 PQAG IKIFGKT+ +NV+YLRN+IGIIFQNPDNQFIGITVEDDIAFGLEN+ ++R+K+K Sbjct: 60 PQAGEIKIFGKTVDFDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIK 119 Query: 121 SIIEDVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRT 180 +II++V Q +++EPHNLSGGQKQRVAIASVLALNPAIIIFDEST+MLDPKAK+T Sbjct: 120 AIIDEVTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKT 179 Query: 181 IKQFMVELRNQGKCVISITHDMEEVTKADKVLVMNEGRLIRQGKPKDVFNSAAELQKIRL 240 IKQFMV+L QGKCVISITHDMEEVTKADKVLVMNEG+LI+QGKP +VF S ELQKIRL Sbjct: 180 IKQFMVKLAKQGKCVISITHDMEEVTKADKVLVMNEGKLIKQGKPVEVFTSEQELQKIRL 239 Query: 241 DIPFSLSLSTKVNGVTSTIDYQQLIEAIGKLWKK 274 DIPFSLSLSTK+ G+TSTIDYQ LI++I KLWKK Sbjct: 240 DIPFSLSLSTKIRGITSTIDYQTLIKSIAKLWKK 273 >ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length = 253 Score = 145 bits (367), Expect = 3e-037, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 136/233 (58%), Gaps = 11/233 (4%) Query: 24 LIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTISSENVTYLRN 83 ++ +SF+V +G ++ ++GHNGSGKST+ KLL G LK + GTI K ++S N Sbjct: 1 MLNQISFNVQDGCHLAVIGHNGSGKSTLVKLLGGFLKAKKGTIFFNDKELTSVGF----N 56 Query: 84 HIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQAGITELLQKE--P- 140 IGI+ Q+PD Q + T+ ++ F LEN +M II +V + EL K+ P Sbjct: 57 KIGILLQDPDVQLLADTLHQELIFTLENHGVLASEMDKIINEVLT---VVELKDKQFTPL 113 Query: 141 HNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVE-LRNQGKCVISIT 199 LS G+KQR A +LA+ P I + DE+ SMLD K +K+F+ + ++ Q K VI+IT Sbjct: 114 KKLSFGEKQRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIVINIT 173 Query: 200 HDMEEVTKADKVLVMNEGRLIRQGKPKDVFNSAAELQKIRLDIPFSLSLSTKV 252 HD ++ AD+++ +++G LI++ P+ ++ ++PF L L+ KV Sbjct: 174 HDFNDLFLADEIIFLSKGSLIKKFAPEAIYEQLDLFHNHHFNLPFPLLLAHKV 226 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 144 bits (362), Expect = 1e-036, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 135/248 (54%), Gaps = 15/248 (6%) Query: 8 AAASFQGVYFSYSELPL--IRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGT 65 A + V+ S + P+ I + S+ + + CI+G +GSGKST+ GL+KP G Sbjct: 18 AVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGD 77 Query: 66 I-----KIFGKTISSENVTYLRNHIGIIFQNPDNQFIGITVEDDIAFG---LENRRY-TR 116 I I K +N LR I I+FQ P+ Q TVE DI FG L +Y R Sbjct: 78 IWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQSKYDAR 137 Query: 117 EKMKSIIEDVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPK 176 +K +E + + L++ P LSGGQK+RVAIA +LA+ P I+IFDE T+ LDP+ Sbjct: 138 QKAAYYLEMMGLK---YPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPE 194 Query: 177 AKRTIKQFMVELRNQGKCVISITHDMEEVTK-ADKVLVMNEGRLIRQGKPKDVFNSAAEL 235 +R + Q + + Q + V ITH ME V + AD VLV+ +G+L++ P +VF L Sbjct: 195 GEREMMQLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMDQTFL 254 Query: 236 QKIRLDIP 243 +K + +P Sbjct: 255 EKTTIVLP 262 >ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 623 Score = 97.1 bits (240), Expect = 2e-022, Method: Compositional matrix adjust. Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 42/243 (17%) Query: 24 LIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTISSENVTYLRN 83 ++NLSF + IVG GSGKS I+ ++ GL +P G I I G+ I S + YL Sbjct: 382 FLQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSE 441 Query: 84 HIGIIFQNPDNQFIGITVEDDIAFGLENRRYTR--------EKMKSIIEDVAQQAGITEL 135 IGI+FQ N T+ +I G+E R + E MK+ + I + Sbjct: 442 MIGIVFQQ--NILFKGTISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTFIEKF 499 Query: 136 LQKEPH-------NLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVEL 188 H NLSGGQKQRVAIA L P I++FD+S S LD ++ +++ Sbjct: 500 SDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDSMSALDALTEKKVRE----- 554 Query: 189 RNQGKCVISITHDMEEVTK------------ADKVLVMNEGRLIRQGKPKDVFNSAAELQ 236 +I +D++ TK ADK+LV++ GR++ + + + + Q Sbjct: 555 --------NIENDLKLTTKIIISQNINSIKHADKILVIDNGRIVGFDSDQKLMKNCSLYQ 606 Query: 237 KIR 239 K++ Sbjct: 607 KMK 609 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 92.4 bits (228), Expect = 5e-021, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 114/208 (54%), Gaps = 8/208 (3%) Query: 18 SYSELPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKI----FGKTI 73 S E+ ++ ++S + GE V I+G +GSGK+T+ L+ G G+ + K Sbjct: 98 SKQEISILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCT 157 Query: 74 SSENVTYLRNHIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQAGIT 133 S + +TY +N++G ++Q N ++ D+IA + + + + IE++A++ I Sbjct: 158 SEQLLTYRKNNLGYVYQRY-NLIELLSAYDNIA--ISQNLIPKYQRRLDIEELAEKLDIK 214 Query: 134 ELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRNQGK 193 E+L K P+ +SGGQKQRVAIA + P +++ DE T LD + I + + K Sbjct: 215 EILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYK 274 Query: 194 -CVISITHDMEEVTKADKVLVMNEGRLI 220 ++ +THD+ A++++ +++G+++ Sbjct: 275 QTILMVTHDVSLTRIANRIIKISDGKIV 302 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 90.9 bits (224), Expect = 1e-020, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 20/218 (9%) Query: 27 NLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLK-----PQAGTIKIFGKTISSE--NVT 79 +++ D+ + ++G +G GKST + L L G I GK I+S N Sbjct: 101 DINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGIINDL 160 Query: 80 YLRNHIGIIFQ--NPDNQFIGITVEDDIAFGL-----ENRRYTREKMKSIIEDVAQQAGI 132 LR +G++FQ P N ++ ++IA+G+ N+ E ++ + A + Sbjct: 161 TLRTSVGMVFQKLTPFN----FSIFENIAYGIRAHGIHNKNAINEIVRQALISAALWDEV 216 Query: 133 TELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRNQG 192 + L + + LSGGQ+QR+ IA +AL P +++ DE TS LD A +I+ + +L+ + Sbjct: 217 KDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKEKF 276 Query: 193 KCVISITHDMEEVTK-ADKVLVMNEGRLIRQGKPKDVF 229 VI +TH M + + D+ + +GR+I QG K +F Sbjct: 277 TIVI-VTHSMAQTIRITDETIFFADGRVIEQGTTKQIF 313 >ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 357 Score = 88.6 bits (218), Expect = 7e-020, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 8/211 (3%) Query: 40 IVGHNGSGKSTISKLLTGLLKPQAGTIKI-----FGKTISSENVTYLRNHIGIIFQNPDN 94 I G +GSGK+T+ K L KP G I F + + IG I Q ++ Sbjct: 105 IFGESGSGKTTLIKQLGLFEKPSFGYINCANYCYFANQYQQKITKNFKQKIGYILQKAED 164 Query: 95 QFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQAGITEL-LQKEPHNLSGGQKQRVAI 153 QF ++ +++ G N + +K + + G+ + L K P LS GQK+R+A+ Sbjct: 165 QFFCDSILEEVLTGAVNLKLCHKKDVNYAKKYLDLCGLENIPLIKNPIELSDGQKKRLAL 224 Query: 154 ASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRNQGKCVISITHDMEEVTK-ADKVL 212 ASVLA+ +I DE T LD A + + +V ++ + VI ++HD++ + + ADK++ Sbjct: 225 ASVLAMQVKFLILDEPTVGLDQMAISNLSKMLVAMKQTTRIVI-VSHDVDFIFETADKII 283 Query: 213 VMNEGRLIRQGKPKDVFNSAAELQKIRLDIP 243 +++G++I Q D F++ + L + + P Sbjct: 284 HLHQGKIIHQTTVNDFFSNTSWLMQYGITPP 314 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 88.6 bits (218), Expect = 7e-020, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 114/202 (56%), Gaps = 10/202 (4%) Query: 24 LIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGK---TISSENVTY 80 + +++ + GE+V I+G +GSGK+++ L++ L +P +G + G S +T Sbjct: 71 ICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNTICCSDAKLTA 130 Query: 81 LRN-HIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQAGITELLQKE 139 LRN ++G IFQ + V+D+I L +++ + +E++ ++ + E K+ Sbjct: 131 LRNKNVGYIFQQY-GLLRDLDVDDNIKLALP----LKKRFNNNLEELLERLELKEHRHKK 185 Query: 140 PHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVEL-RNQGKCVISI 198 H LSGGQ+QRVAIA L P I+ DE T ++ + I QF VE R++G ++ + Sbjct: 186 VHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIV 245 Query: 199 THDMEEVTKADKVLVMNEGRLI 220 TH+ + V A +V+ +++G++I Sbjct: 246 THNEKIVELAKRVIKIHDGKII 267 >ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length = 564 Score = 87.8 bits (216), Expect = 1e-019, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 22/208 (10%) Query: 27 NLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTI---SSENVTYLRN 83 ++S V+E I+G NG+GKST++ +L GL KP +G I I K + SS++ +++ Sbjct: 25 DVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKIFIGEKQVNFKSSKDA--VKH 82 Query: 84 HIGIIFQNPDNQFI-GITVEDDIAFGLE---------NRRYTREKMKSIIEDVAQQAGIT 133 IG++ Q+ + I TV D+I G E NR+ + K+K+I+E + GI Sbjct: 83 KIGMVHQHF--KLIENYTVLDNIILGNESRFGFLPLINRKVSEAKIKTIME----KYGIF 136 Query: 134 ELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRNQGK 193 L+++ NL+ GQ+QRV I VL + I+IFDE T++L + + + + GK Sbjct: 137 VDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIANFKKLGK 196 Query: 194 CVISITHDMEEVTK-ADKVLVMNEGRLI 220 ++ I+H + E+ + AD V+ G+++ Sbjct: 197 TIVLISHKLNEIKQVADTATVLRLGKVV 224 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 83.2 bits (204), Expect = 3e-018, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 75/123 (60%), Gaps = 2/123 (1%) Query: 111 NRRYTREKMKSIIEDVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDEST 170 +R+ T+ + + DV + G+ + P LSGG KQRVA+A L + P I++ DE Sbjct: 316 SRKLTKAEQNKKVSDVIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPL 375 Query: 171 SMLDPKAKRTIKQFMVEL-RNQGKCVISITHDMEE-VTKADKVLVMNEGRLIRQGKPKDV 228 S LD K ++ +++ + ++ + G I +THD EE + +D+++VMNEG +++ G P D+ Sbjct: 376 SALDAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDI 435 Query: 229 FNS 231 ++S Sbjct: 436 YDS 438 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 81.6 bits (200), Expect = 8e-018, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 23/207 (11%) Query: 36 EYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTISSEN----VTYLRNHIGIIFQN 91 +++ I+G +GSGK+T+ +++G+ + +G++ + G + N + + ++G IFQ Sbjct: 263 DFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTKFRQKYVGYIFQQ 322 Query: 92 ----PDNQFIGITVEDDIAFG--LENRRYTREKMKSIIEDVAQQAGITELLQKEPHNLSG 145 P+ +TV ++I G L+ R + +++E V G+ L +K P+ LSG Sbjct: 323 YGLLPN-----LTVRENIEIGANLQPDPSKRISIDALLEAV----GMDSLQKKLPNELSG 373 Query: 146 GQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTI-KQFMVELRNQGKCVISITHDMEE 204 GQ+QRV+IA A NP +I DE T LD + + + KQF+ + +I +TH+ Sbjct: 374 GQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMIIVTHNNLI 433 Query: 205 VTKADKVLVMNEGR---LIRQGKPKDV 228 AD V+ + +G+ L R PK V Sbjct: 434 ANLADLVIYVADGKIKSLHRNLNPKQV 460 >ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 589 Score = 74.7 bits (182), Expect = 1e-015, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 13/220 (5%) Query: 12 FQGVYFSYS-ELPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFG 70 F+ V F Y+ + P + ++F V G+ V IVG G+GKSTI LL KP G I + Sbjct: 354 FENVAFGYNKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDN 413 Query: 71 KTISSENVTYLRNHIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQA 130 IS R I I+ Q D+ T++++I G ++ T +++ + + Sbjct: 414 FEISDVTKKAWREKISIVLQ--DSFLFSGTIKENIRLGRQDA--TDDEIIAACKTANAHD 469 Query: 131 GITEL-------LQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQ 183 I L + + LS G++Q + IA + N +++ DE+TS +D +++ I++ Sbjct: 470 FIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDVHSEKLIQE 529 Query: 184 FMVELRNQGKCVISITHDMEEVTKADKVLVMNEGRLIRQG 223 + L + K I+H + + A ++V+N+G+++ G Sbjct: 530 SIGRLM-KNKTSFIISHRLSIIRDATLIMVINDGKVLEMG 568 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 70.5 bits (171), Expect = 2e-014, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 67/110 (60%), Gaps = 8/110 (7%) Query: 125 DVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPK----AKRT 180 +VA + IT++L K P +SGGQ+QRVAIA + P +++ DE S LD K ++ Sbjct: 350 EVANKLAITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQW 409 Query: 181 IKQFMVELRNQGKCVISITHDMEE-VTKADKVLVMNEGRLIRQGKPKDVF 229 I+QF EL+ + +THD EE ++ +D ++ M+ G++ + G P +++ Sbjct: 410 IRQFQQELQ---ITTVFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELY 456 >ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 245 Score = 68.6 bits (166), Expect = 8e-014, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 103/208 (49%), Gaps = 22/208 (10%) Query: 11 SFQGVYFSYSELPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFG 70 SF+ V Y + PL++N+SF V E VC++G +G GKS++ +T ++G + G Sbjct: 8 SFEKVSIIYKKAPLLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVYFDG 67 Query: 71 KTISSENVTYLRNHIGIIFQNP---DNQFIGITV-----------EDDIAFGLENRRYTR 116 + + L+ + Q P D ++ + + I F ++ + Sbjct: 68 VASNKKEYKKLKKQCSYLDQIPNLIDTDYVYEAILRSAKQKLTWLQKLICF---EPKWIK 124 Query: 117 EKMKSIIEDVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPK 176 +K+ +I+++V ++ +++ +LS GQKQRV IA + +P +++ DE T+ LDP Sbjct: 125 DKILAILKEVNLNDYVSCIIK----DLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPL 180 Query: 177 AKRTIKQFMVELRNQGK-CVISITHDME 203 I + + + K ++ +THD++ Sbjct: 181 TASKIMDLITDFVKREKITLVFVTHDID 208 >ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length = 402 Score = 62.4 bits (150), Expect = 5e-012, Method: Compositional matrix adjust. Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 56/264 (21%) Query: 22 LPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTISSENVTYL 81 L +R + V G V IVG +GSGKS K + G K+ + ++T L Sbjct: 38 LHAVRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFNDNAQTKAKLMN--FKNVDITKL 95 Query: 82 RNH---------IGIIFQNP-----DNQFIGITVED---------------DIAFGLENR 112 + H + I Q+P IG V++ D+ F L N+ Sbjct: 96 KKHQWKYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNK 155 Query: 113 RYTREKMKSIIEDVAQ-----------QAGITELLQ------------KEPHNLSGGQKQ 149 ++ KS ++++ Q + E+LQ P SGG +Q Sbjct: 156 EIDKKTYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQ 215 Query: 150 RVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRN-QGKCVISITHDMEEVTK- 207 R+ IA +A P +II DE T+ LD + + + +LR+ +I I+H++ + Sbjct: 216 RIVIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLRDLLNITIIFISHNISLIANF 275 Query: 208 ADKVLVMNEGRLIRQGKPKDVFNS 231 D V VM G+++ QG +++F + Sbjct: 276 CDFVYVMYAGKIVEQGLVEEIFTN 299 >ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length = 848 Score = 61.2 bits (147), Expect = 1e-011, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 2/94 (2%) Query: 140 PHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVEL-RNQGKCVISI 198 PH SGGQ+QR+AIA L P +II DE S LD + + + +L + V+ I Sbjct: 682 PHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTVLFI 741 Query: 199 THDMEEV-TKADKVLVMNEGRLIRQGKPKDVFNS 231 HD+ V T +++++M+ G+++ +G ++F++ Sbjct: 742 AHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSN 775 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507933|ref|NP_109882.1| cobalt transport ATP-binding protein [Mycoplasma pneumoniae M129] (303 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 495 e-142 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 151 8e-039 ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasm... 132 6e-033 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 99 5e-023 ref|NP_072781.1| galactoside ABC transporter, ATP-binding protei... 91 1e-020 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 88 1e-019 ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasm... 85 7e-019 ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasm... 84 1e-018 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 83 3e-018 ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding prote... 77 2e-016 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 72 1e-014 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 66 5e-013 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 64 1e-012 ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding prote... 64 1e-012 ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasm... 63 4e-012 ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasm... 59 5e-011 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 495 bits (1275), Expect = e-142, Method: Compositional matrix adjust. Identities = 242/303 (79%), Positives = 270/303 (89%), Gaps = 2/303 (0%) Query: 2 KKIVELKNPLRDGEILSVSNLSCFFNEKTVHEVKVIDNFSYTFAKNKVYCIIGDSGSGKS 61 KKIV + NPL+ EIL+VS+LSC FN KT + +KVID+FSYTF KN++YCIIGDSGSGKS Sbjct: 3 KKIVPI-NPLKADEILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKS 61 Query: 62 TLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDFKRLRKTISIVFQFPEYQLFKDTVEKD 121 TLVNHFNGLIKP GDIWVKDIYIG KQRKIK+FK+LRKTISIVFQFPEYQLFKDTVEKD Sbjct: 62 TLVNHFNGLIKPNQGDIWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKD 121 Query: 122 IMFGPIALGQSKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEV 181 IMFGP+ALGQSK +ARQKAAYYLE MGLKY FLERNPFELSGGQKRRVAIAGILAIEPE+ Sbjct: 122 IMFGPVALGQSKYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEI 181 Query: 182 LIFDEPTAGLDPEGEREMMRLIKDAKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKS 241 LIFDEPTAGLDPEGEREMM+LIK AK RTVFMITHQMENVLEVAD VLVL+KG+LVK+ Sbjct: 182 LIFDEPTAGLDPEGEREMMQLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKA 241 Query: 242 GDPYEVFMDEAFLAHTTIIMPPVIQVIKDLINLNPKFSCLLDFKPRNLDQLADAINNTIA 301 PYEVFMD+ FL TTI++PPVIQVIKDLI +N F+ L++ +P+NL+QLA AIN TIA Sbjct: 242 ASPYEVFMDQTFLEKTTIVLPPVIQVIKDLIAINAHFNKLIELQPKNLEQLASAINKTIA 301 Query: 302 -HG 303 HG Sbjct: 302 NHG 304 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 151 bits (381), Expect = 8e-039, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 136/234 (58%), Gaps = 13/234 (5%) Query: 32 HEVKVIDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRK 91 +E+ +I S++ + + CI+G +GSGKST+ GL+KP G+I I K Sbjct: 19 NELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEI-----KIFGKTVD 73 Query: 92 IKDFKRLRKTISIVFQFPEYQLFKDTVEKDIMFGPIALGQSKNEARQKAAYYLEKMGLKY 151 + LR I I+FQ P+ Q TVE DI FG ++K +RQK ++++ L+ Sbjct: 74 FDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGL----ENKCFSRQKIKAIIDEVTLQT 129 Query: 152 T---FLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDAKA 208 F+++ P LSGGQK+RVAIA +LA+ P ++IFDE TA LDP+ ++ + + + Sbjct: 130 QTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAK 189 Query: 209 SGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVFMDEAFLAHTTIIMP 262 G+ V ITH ME V + AD+VLV+++G+L+K G P EVF E L + +P Sbjct: 190 QGKCVISITHDMEEVTK-ADKVLVMNEGKLIKQGKPVEVFTSEQELQKIRLDIP 242 >ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 357 Score = 132 bits (331), Expect = 6e-033, Method: Compositional matrix adjust. Identities = 80/267 (29%), Positives = 144/267 (53%), Gaps = 10/267 (3%) Query: 10 PLRDGEILSVSNLSCFFNEKTV-----HEVKVIDNFSYTFAKNKVYCIIGDSGSGKSTLV 64 P + ++L++ FFN +V ++ ++I S NK+ I G+SGSGK+TL+ Sbjct: 58 PFFNSKLLNIEQDPLFFNNISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLI 117 Query: 65 NHFNGLIKPAYGDIWVKDI--YIGQKQRKIKDFKRLRKTISIVFQFPEYQLFKDTVEKDI 122 KP++G I + + Q Q+KI K ++ I + Q E Q F D++ +++ Sbjct: 118 KQLGLFEKPSFGYINCANYCYFANQYQQKIT--KNFKQKIGYILQKAEDQFFCDSILEEV 175 Query: 123 MFGPIALGQSKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEVL 182 + G + L + A YL+ GL+ L +NP ELS GQK+R+A+A +LA++ + L Sbjct: 176 LTGAVNLKLCHKKDVNYAKKYLDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFL 235 Query: 183 IFDEPTAGLDPEGEREMMRLIKDAKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSG 242 I DEPT GLD + +++ K + R V +++H ++ + E AD+++ L +G+++ Sbjct: 236 ILDEPTVGLDQMAISNLSKMLVAMKQTTRIV-IVSHDVDFIFETADKIIHLHQGKIIHQT 294 Query: 243 DPYEVFMDEAFLAHTTIIMPPVIQVIK 269 + F + ++L I P +IQ +K Sbjct: 295 TVNDFFSNTSWLMQYGITPPVIIQAVK 321 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 99.0 bits (245), Expect = 5e-023, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 28/244 (11%) Query: 26 FNEKTVHEVKVIDNFSYTFAKNK--------------VYCIIGDSGSGKSTLVNHFNGLI 71 F+EK V E++ NF++ + KNK + +IG SG GKST + N L Sbjct: 77 FDEKNVFEIR---NFNFWYNKNKQVLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLN 133 Query: 72 KPAYGDIWVKDIYIGQKQRK---IKDFKRLRKTISIVFQFPEYQLFKDTVEKDIMFGPIA 128 W DIY K I D LR ++ +VFQ + F ++ ++I +G A Sbjct: 134 DLNENTRWTGDIYFLGKNINSGIINDLT-LRTSVGMVFQ--KLTPFNFSIFENIAYGIRA 190 Query: 129 LG-QSKNEARQKAAYYLEKMGLKYTF---LERNPFELSGGQKRRVAIAGILAIEPEVLIF 184 G +KN + L L L RN LSGGQ++R+ IA +A++P+VL+ Sbjct: 191 HGIHNKNAINEIVRQALISAALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLM 250 Query: 185 DEPTAGLDPEGEREMMRLIKDAKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDP 244 DEPT+ LD + LI+ K T+ ++TH M + + DE + + G++++ G Sbjct: 251 DEPTSALDSIATNSIELLIQQLKEKF-TIVIVTHSMAQTIRITDETIFFADGRVIEQGTT 309 Query: 245 YEVF 248 ++F Sbjct: 310 KQIF 313 >ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length = 564 Score = 90.9 bits (224), Expect = 1e-020, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 119/213 (55%), Gaps = 21/213 (9%) Query: 41 SYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDFK-RLR 99 S +N V+ I+G++G+GKSTL + GL KP G I +IG+KQ K K ++ Sbjct: 27 SLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKI-----FIGEKQVNFKSSKDAVK 81 Query: 100 KTISIVFQFPEYQLFKD-TVEKDIMFG--------PIALGQSKNEARQKAAYYLEKMGLK 150 I +V Q ++L ++ TV +I+ G P+ + + +EA+ K +EK G+ Sbjct: 82 HKIGMVHQ--HFKLIENYTVLDNIILGNESRFGFLPL-INRKVSEAKIKT--IMEKYGI- 135 Query: 151 YTFLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDAKASG 210 + L++ L+ GQ++RV I +L + +LIFDEPTA L + +++I + K G Sbjct: 136 FVDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIANFKKLG 195 Query: 211 RTVFMITHQMENVLEVADEVLVLSKGQLVKSGD 243 +T+ +I+H++ + +VAD VL G++V S D Sbjct: 196 KTIVLISHKLNEIKQVADTATVLRLGKVVGSFD 228 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 88.2 bits (217), Expect = 1e-019, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 13/219 (5%) Query: 27 NEKTVHEVKVIDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIG 86 N+ + E+ ++ + S A ++ I+G SGSGK+TL+N G + G V + + Sbjct: 95 NDDSKQEISILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPL- 153 Query: 87 QKQRKIKDFKRLRKTISIVFQFPEYQLFKDTVEKDIMFGPIALGQS---KNEARQKAAYY 143 +K + + + V+Q Y L +E + IA+ Q+ K + R Sbjct: 154 EKCTSEQLLTYRKNNLGYVYQ--RYNL----IELLSAYDNIAISQNLIPKYQRRLDIEEL 207 Query: 144 LEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLI 203 EK+ +K L + P+E+SGGQK+RVAIA + EP++L+ DEPT LD ++ L+ Sbjct: 208 AEKLDIK-EILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLL 266 Query: 204 KDA-KASGRTVFMITHQMENVLEVADEVLVLSKGQLVKS 241 + K +T+ M+TH + ++ +A+ ++ +S G++V + Sbjct: 267 QTINKTYKQTILMVTHDV-SLTRIANRIIKISDGKIVSN 304 >ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 623 Score = 85.1 bits (209), Expect = 7e-019, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 25/218 (11%) Query: 37 IDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDFK 96 + N S+ F K Y I+G +GSGKS + N GL +P G+I + G+K + I D Sbjct: 383 LQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNEGEILIG----GEKIQSI-DSL 437 Query: 97 RLRKTISIVFQFPEYQLFKDTVEKDIMFGPIALGQ-------SKNEARQKAA------YY 143 L + I IVFQ + LFK T+ +I G KNEA + AA + Sbjct: 438 YLSEMIGIVFQ--QNILFKGTISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTF 495 Query: 144 LEKMGLKYTF-LERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRL 202 +EK Y +E+ LSGGQK+RVAIA L +P +L+FD+ + LD E+++ Sbjct: 496 IEKFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDSMSALDALTEKKVREN 555 Query: 203 IK-DAKASGRTVFMITHQMENVLEVADEVLVLSKGQLV 239 I+ D K + + + Q N ++ AD++LV+ G++V Sbjct: 556 IENDLKLTTKII---ISQNINSIKHADKILVIDNGRIV 590 >ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length = 253 Score = 84.3 bits (207), Expect = 1e-018, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 18/217 (8%) Query: 36 VIDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDF 95 +++ S+ +IG +GSGKSTLV G +K G I+ D K+ F Sbjct: 1 MLNQISFNVQDGCHLAVIGHNGSGKSTLVKLLGGFLKAKKGTIFFND-----KELTSVGF 55 Query: 96 KRLRKTISIVFQFPEYQLFKDTVEKDIMFGPIALGQSKNEARQKAAYYLEKMGLK---YT 152 + I I+ Q P+ QL DT+ ++++F G +E + L + LK +T Sbjct: 56 NK----IGILLQDPDVQLLADTLHQELIFTLENHGVLASEMDKIINEVLTVVELKDKQFT 111 Query: 153 FLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDA-KASGR 211 L++ LS G+K+R A +LA++P++ + DE + LD + ++ + + D K + Sbjct: 112 PLKK----LSFGEKQRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNK 167 Query: 212 TVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVF 248 V ITH N L +ADE++ LSKG L+K P ++ Sbjct: 168 IVINITHDF-NDLFLADEIIFLSKGSLIKKFAPEAIY 203 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 83.2 bits (204), Expect = 3e-018, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 76/118 (64%), Gaps = 2/118 (1%) Query: 132 SKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGL 191 +K E +K + +E +GLK +R P ELSGG K+RVA+A L +EPE+L+ DEP + L Sbjct: 320 TKAEQNKKVSDVIEMVGLKGK-EDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSAL 378 Query: 192 DPEGEREMMRLIKD-AKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVF 248 D + + + + ++ K SG T ++TH E L ++D ++V+++G +++ G+P +++ Sbjct: 379 DAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIY 436 >ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length = 848 Score = 77.4 bits (189), Expect = 2e-016, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 13/144 (9%) Query: 137 RQKAAYYLEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGE 196 R K L+ +GLK R P E SGGQ++R+AIA L +P+++I DE + LD + Sbjct: 661 RNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQ 720 Query: 197 REMMRLIKD-AKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVFMDEAFLA 255 +++ ++KD AK TV I H + V V + ++++ +G++V+ G E+F + Sbjct: 721 AQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSN----- 775 Query: 256 HTTIIMPPVIQVIKDLINLNPKFS 279 PV + LI +PK S Sbjct: 776 -------PVHPYTRSLIKASPKLS 792 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 71.6 bits (174), Expect = 1e-014, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 9/190 (4%) Query: 51 CIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDI-YIGQKQRKIKDFKRLRKTISIVFQFP 109 I+G SGSGK+TL+N +G+ + + G + V I RK+ F++ K + +FQ Sbjct: 266 VILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTKFRQ--KYVGYIFQ-- 321 Query: 110 EYQLFKD-TVEKDIMFGPIALGQSKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKRR 168 +Y L + TV ++I G A Q R LE +G+ + ++ P ELSGGQ++R Sbjct: 322 QYGLLPNLTVRENIEIG--ANLQPDPSKRISIDALLEAVGMD-SLQKKLPNELSGGQQQR 378 Query: 169 VAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDAKASGRTVFMITHQMENVLEVAD 228 V+IA A P ++ DEPT LD E + +++ K +T +I + +AD Sbjct: 379 VSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMIIVTHNNLIANLAD 438 Query: 229 EVLVLSKGQL 238 V+ ++ G++ Sbjct: 439 LVIYVADGKI 448 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 65.9 bits (159), Expect = 5e-013, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 17/193 (8%) Query: 52 IIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDFK--RLR-KTISIVFQF 108 I+G SGSGK++L++ + L +P GD +V G D K LR K + +FQ Sbjct: 87 ILGKSGSGKTSLLSLISALDRPTSGDSFV----CGTNTICCSDAKLTALRNKNVGYIFQ- 141 Query: 109 PEYQLFKD-TVEKDIMFGPIALGQSKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKR 167 +Y L +D V+ +I +AL K ++ + +LSGGQ++ Sbjct: 142 -QYGLLRDLDVDDNI---KLALPLKKRFNNNLEELLERLELKEHR--HKKVHKLSGGQQQ 195 Query: 168 RVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMR-LIKDAKASGRTVFMITHQMENVLEV 226 RVAIA L EP++L DEPT ++ + +++++ ++ + G T+ ++TH E ++E+ Sbjct: 196 RVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIVTHN-EKIVEL 254 Query: 227 ADEVLVLSKGQLV 239 A V+ + G+++ Sbjct: 255 AKRVIKIHDGKII 267 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 64.3 bits (155), Expect = 1e-012, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 59/100 (59%), Gaps = 1/100 (1%) Query: 154 LERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDAKASGR-T 212 L + P ++SGGQ++RVAIA + P++L+ DEP + LD + + + I+ + + T Sbjct: 361 LTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQIT 420 Query: 213 VFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVFMDEA 252 +TH E + ++D ++ +S G++ + G P E+++ A Sbjct: 421 TVFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPA 460 >ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length = 402 Score = 64.3 bits (155), Expect = 1e-012, Method: Compositional matrix adjust. Identities = 72/299 (24%), Positives = 120/299 (40%), Gaps = 74/299 (24%) Query: 11 LRDGEILSVSNLSCFFNEK--TVHEVKVIDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFN 68 L+D IL +++L F K +H V+ ID + + I+G+SGSGKS V Sbjct: 16 LKDNLILDITDLHVNFKVKDGILHAVRGID---LKVERGSIVGIVGESGSGKSVSVKSII 72 Query: 69 GLIKPAYGDIWVKDIYIGQKQRKIKDFKRLRKTISIVFQFPEYQ-LFKDTVEKDIMFG-- 125 G A Q + K+ +FK + T Q+ Y+ + + +D +F Sbjct: 73 GFNDNA------------QTKAKLMNFKNVDITKLKKHQWKYYRGTYVSYISQDPLFSLN 120 Query: 126 -PIALGQSKNEA---RQKAAYYLEKMGLKYTF---------------------------- 153 + +G+ EA K Y+ K LK+ Sbjct: 121 PTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPI 180 Query: 154 ---------------------LERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLD 192 L+ P E SGG ++R+ IA +A EP+++I DEPT LD Sbjct: 181 NVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALD 240 Query: 193 PEGEREMMRLIKDAK-ASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVFMD 250 + +++ LIK + T+ I+H + + D V V+ G++V+ G E+F + Sbjct: 241 VTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTN 299 >ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 589 Score = 63.2 bits (152), Expect = 4e-012, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 109/216 (50%), Gaps = 21/216 (9%) Query: 49 VYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDFKRLRKTISIVFQF 108 V I+G +G+GKST++N KP G I++ + I + K R+ ISIV Q Sbjct: 380 VVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDNFEISDVTK-----KAWREKISIVLQ- 433 Query: 109 PEYQLFKDTVEKDIMFGPIALGQSKNEARQKAAY---YLEKMGLKY-TFLERNPFELSGG 164 + LF T++++I G + A K A ++ ++ Y T++ LS G Sbjct: 434 -DSFLFSGTIKENIRLGRQDATDDEIIAACKTANAHDFIMRLPKGYDTYISNKADYLSVG 492 Query: 165 QKRRVAIAGILAIEPEVLIFDEPTAGLDPEGER----EMMRLIKDAKASGRTVFMITHQM 220 +++ + IA + VL+ DE T+ +D E+ + RL+K+ +T F+I+H++ Sbjct: 493 ERQLLTIARAVIRNAPVLLLDEATSSVDVHSEKLIQESIGRLMKN-----KTSFIISHRL 547 Query: 221 ENVLEVADEVLVLSKGQLVKSGDPYEVFMDEAFLAH 256 +++ A ++V++ G++++ G+ ++ F A Sbjct: 548 -SIIRDATLIMVINDGKVLEMGNHDQLMKQNGFYAR 582 >ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 245 Score = 59.3 bits (142), Expect = 5e-011, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 160 ELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKD-AKASGRTVFMITH 218 +LS GQK+RV IA + P++L+ DEPT GLDP ++M LI D K T+ +TH Sbjct: 146 DLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDLITDFVKREKITLVFVTH 205 Query: 219 QMENVLEVADEVLVLSKGQLV 239 ++ L+ + ++ L LV Sbjct: 206 DIDLALKYSTRIIALKNHALV 226 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507934|ref|NP_109883.1| similar to cobalt transport membrane protein [Mycoplasma pneumoniae M129] (434 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072844.1| hypothetical protein MG181 [Mycoplasma genitali... 519 e-149 >ref|NP_072844.1| hypothetical protein MG181 [Mycoplasma genitalium G-37] Length = 420 Score = 519 bits (1336), Expect = e-149, Method: Compositional matrix adjust. Identities = 266/432 (61%), Positives = 315/432 (72%), Gaps = 13/432 (3%) Query: 1 MDSFFINGYVPRDTFIHRLHPTTKXXXXXXXXXXXXXXXXXXXQSXXXXXXXXXXXXXKL 60 MD+F INGY+PR++F+H+LHPTTK QS KL Sbjct: 1 MDNF-INGYIPRNSFVHKLHPTTKLVIFLLLVILVFVPIGFVFQSVIFLFVTFVFFIAKL 59 Query: 61 PGRFYXXXXXXXXXXXXXXXXVNWFTFRDPGFYITADQVNTVKPHFNGNNFNFWNISLFN 120 PGRFY VNWFTFRDPGFY+T+DQ+N++ P + + F+FWNISLFN Sbjct: 60 PGRFYSSAIKSITLLFLLLLFVNWFTFRDPGFYLTSDQLNSL-PAIDNSKFSFWNISLFN 118 Query: 121 YQDNVFSQVFNFNRANMTELNKINFFFKETANANAYTKVTGIDKLAEMLASKNLFKFNGS 180 YQDNVFSQVF FNR N+T LN+++FF+K NA++YTKV GID LA MLA+ NG Sbjct: 119 YQDNVFSQVFAFNRGNLTNLNQLDFFYKAN-NADSYTKVKGIDSLASMLAN------NG- 170 Query: 181 TNGIDKNKILGAFLDHKIAVYLGRSWGGDFSGFVIDVSVSDKTSTFTIKPFLANSNYVLT 240 NG+ K+KIL AFLDH + +YL RSWG +F+GFV+D + + T F + PFLAN++YVLT Sbjct: 171 -NGLSKDKILSAFLDHNLNLYLARSWGANFAGFVVDFNPT--TQLFKLTPFLANASYVLT 227 Query: 241 LRAIILAFYVTQKILIMIIXXXXXXXXXXXXXXXYGIERLLWPLKLLRVPVNVFAMTIAI 300 LRA+ILAFYVTQKILIMI+ YGIERLLWPLKL+++PVNVFAMTIAI Sbjct: 228 LRAVILAFYVTQKILIMILFATVLTSTSSSVELAYGIERLLWPLKLIKIPVNVFAMTIAI 287 Query: 301 AIRFVPSLLLESQRILNAQASRGLDFKNGNFFVKMRSLSSLVVPMISIAFRNAGELASAM 360 AIRFVPSLLLESQRILNAQASRGLDF+NG F VKMRSLSSLVVPM+SIAFRNA ELASAM Sbjct: 288 AIRFVPSLLLESQRILNAQASRGLDFRNGGFLVKMRSLSSLVVPMVSIAFRNASELASAM 347 Query: 361 EARGYDPTKKRTTYRKFKIDWVDATALILTALYFVVIIFLTVKGAVFLDLGTPEWLLTGK 420 EARGY P KKR++YR++KI W+D AL L +FVVIIFLT++GAVFLDLGTPEWLLTGK Sbjct: 348 EARGYHPAKKRSSYRQYKITWIDILALFLVFAWFVVIIFLTIRGAVFLDLGTPEWLLTGK 407 Query: 421 IKEQVERSLSVK 432 I EQV R L V Sbjct: 408 INEQVIRDLKVS 419 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507935|ref|NP_109884.1| pseudouridylate synthase I [Mycoplasma pneumoniae M129] (243 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072845.1| pseudouridylate synthase I (hisT) [Mycoplasma g... 300 1e-083 >ref|NP_072845.1| pseudouridylate synthase I (hisT) [Mycoplasma genitalium G-37] Length = 244 Score = 300 bits (767), Expect = 1e-083, Method: Compositional matrix adjust. Identities = 143/243 (58%), Positives = 179/243 (73%) Query: 1 MPRYLAIVAYNGAPFRGWAKQPGYHTVQGQIEQNLALIYQTPINIYGSGRTDKGVHAINQ 60 M RYL IV+Y+G+ F+GWA QP T+QG +EQ+ +LI I + GSGRTDKGVHAINQ Sbjct: 1 MARYLGIVSYDGSYFKGWAIQPNLATIQGLLEQSFSLIIGRKIKVIGSGRTDKGVHAINQ 60 Query: 61 TFHVDLPDKLPLKQLIAKLNQLNYPDIFVKALVPVAPRFHARFAVKTKVYEYLINTRAFN 120 TFHVD+ ++ L LI K+NQL P VK LV V FHARF VKTKVYEYLIN N Sbjct: 61 TFHVDINGEINLNLLIRKINQLIKPHCIVKTLVLVNDSFHARFQVKTKVYEYLINCGNLN 120 Query: 121 PAQYHTVWQYNHPLDLAQLEADTTLFLGRKDFWSFSTASQKDTQRTISKIIVQQDHTGTV 180 P Q++ VWQ N LDL +L+AD TLFLG+K+F SFS++ D+ RTISKI +Q++ V Sbjct: 121 PLQFNYVWQLNQQLDLEKLKADATLFLGKKNFLSFSSSIHTDSIRTISKITIQKETNQLV 180 Query: 181 KLTFFGNGFLRNQIRMMVASLVALNNRTLMRETVQQLFDQPQKGGCKVKAPACGLYLKTV 240 +LTFFG+GFLR+Q+RM+VA LV LN + ETV +LF+ P+KG C VKAP+CGLYLKTV Sbjct: 181 RLTFFGSGFLRSQVRMIVACLVNLNTNKMALETVAKLFEHPKKGSCVVKAPSCGLYLKTV 240 Query: 241 LYE 243 +YE Sbjct: 241 VYE 243 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507936|ref|NP_109885.1| oligoendopeptidase F [Mycoplasma pneumoniae M129] (611 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072846.1| oligoendopeptidase F (pepF) [Mycoplasma genital... 828 0.0 >ref|NP_072846.1| oligoendopeptidase F (pepF) [Mycoplasma genitalium G-37] Length = 607 Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/607 (64%), Positives = 492/607 (81%), Gaps = 1/607 (0%) Query: 1 MNNQYNWNLEVLLNGKSLADNFTELKQLSEQEKALYDGGACFQTKAKFTEFLQLQEKIEV 60 M N Y W+L VLLN +SL NF +++ +SE Y+ G CF K F +FL + +K Sbjct: 1 MKNSYKWDLSVLLNNQSLQANFLKIQTVSEALIKAYNNGLCFTNKTSFEQFLAIDDKFTE 60 Query: 61 LENRYSNFLSNKHAENSLDKTINDALFQYEMFKSEHALVFVDFEKNLFKHEKVIRAYLQD 120 LENRY+N+L NK EN+LDK +NDA+F Y+ FK+ H L F ++ L+ HEK+I+ YL D Sbjct: 61 LENRYTNYLYNKQNENNLDKEVNDAIFAYQSFKNNHNLAFSTLQQELYNHEKLIKDYLTD 120 Query: 121 PALKQYQRDFELVWRNKKHQIDPASQKLLAQISPAWNQADKIFNVLSTADLNLQPVVYKG 180 P L Y+R+ LV+R+K HQ+ +Q LL+QI+P +NQA++IFN+LSTADLNLQPVVY+ Sbjct: 121 PKLAVYKRNLMLVFRDKPHQLSSQTQSLLSQINPCFNQAERIFNILSTADLNLQPVVYQN 180 Query: 181 KTYVINAVSDYQSLLENKDRGLREAAYKVWLEIYWPTRNTLSVSLVENYIQLETFAKLKK 240 K Y IN+VSDYQSLLEN +RG+R+A Y+ W+EIYW RN+LS+SLVENYIQLE FAKLK Sbjct: 181 KKYPINSVSDYQSLLENTNRGIRKACYEKWIEIYWTNRNSLSLSLVENYIQLENFAKLKN 240 Query: 241 HPNYIAKTAFDDEIDVAFIDFVYEQVASFAPTFKAFQSLRKQIYKHVLKLDKAQPWDLSV 300 HP+YIA+TAF+DEI+V FIDFVY+QVA FA TF+AF L+KQIYKHVLK++K +P+DL++ Sbjct: 241 HPSYIAQTAFNDEIEVGFIDFVYQQVAQFAKTFQAFIRLKKQIYKHVLKVNKVEPYDLTL 300 Query: 301 PLFKASGDYTIEQAQTDALKILAPMGSEYLEVVKEAFRERWISWLPDKNKYTGAYSISNV 360 LFK YTIEQA+ DALK+L +G Y+++VK+AF E WI WL DKNKYTGAYSISNV Sbjct: 301 TLFKTKKSYTIEQAKQDALKVLDLLGDNYIKIVKKAFNENWIDWLADKNKYTGAYSISNV 360 Query: 361 KGLDHYFILMNFDKTRASLNTLVHELGHSVHSWYASKYQTQNLDPTIFYAEIASICNELL 420 KGL+H+FILMNFDKT++SLNTLVHELGHSVHSWYAS++Q+QN+DPTIFYAEIASI NELL Sbjct: 361 KGLEHFFILMNFDKTKSSLNTLVHELGHSVHSWYASQHQSQNIDPTIFYAEIASIANELL 420 Query: 421 LCYHDIINYENRNPQQLIRSLMEQISHFFGATTRQLMFSQFEQDTLKLIQQNQKPDFKTL 480 LCY+++ Y+N N +QLI SL+ QI+HFFGATTRQ+MFSQFE+DTL LI+ NQKPDFKTL Sbjct: 421 LCYYELQLYKN-NHKQLIASLLSQINHFFGATTRQIMFSQFEKDTLYLIRVNQKPDFKTL 479 Query: 481 VEIYGKTAIKYQAANADAITKKLKQTKYQKSLAYITSIPHFYAGNFYVYKYAIGQVVGTL 540 ++IY TA+KYQ + + KLK+T+YQKSL++I +IPHFYAGNFYVYKYAIGQV G L Sbjct: 480 IKIYANTAVKYQGFKPEVVANKLKKTQYQKSLSHIIAIPHFYAGNFYVYKYAIGQVAGIL 539 Query: 541 VGKKLSAGDSNMLAAYKRFLSSGSTLPPLETIKLLGIDLTQPEPWQEAHAELKRWIKLVQ 600 V KK+++GD M Y +FLSSGS+L PLETIKLLGIDLT P+PWQEAH E+KRW+K+V+ Sbjct: 540 VAKKINSGDKKMKDNYFKFLSSGSSLAPLETIKLLGIDLTSPQPWQEAHNEVKRWLKIVK 599 Query: 601 TAFKQLQ 607 +FK+LQ Sbjct: 600 QSFKKLQ 606 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507937|ref|NP_109886.1| adenine-specific methyltransferase EcoRI [Mycoplasma pneumoniae M129] (319 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072847.1| adenine-specific DNA modification methylase [My... 394 e-112 >ref|NP_072847.1| adenine-specific DNA modification methylase [Mycoplasma genitalium G-37] Length = 317 Score = 394 bits (1012), Expect = e-112, Method: Compositional matrix adjust. Identities = 188/316 (59%), Positives = 232/316 (73%) Query: 1 MHYFNRAKKAKNNEFYTLFEDIAAEVACYPNAFKGKVVLCNCNDGYXXXXXXXXXXXXHA 60 MH+FNRAKKAKNNEF+TL ++I EV Y F K + CNCNDG + Sbjct: 1 MHHFNRAKKAKNNEFFTLIDEIENEVINYQKQFANKTIFCNCNDGKNSHFFQFFQTNFNQ 60 Query: 61 LGLKKLVAIAFNPLGNSYQLNFDGKEIKELPLAGNGSFDSAEAIVLLKQSDIVVTNPPFS 120 L LKKL+ +FN L + + FDG ++ + L GNG F S E+I +LKQ+DIVVTNPPFS Sbjct: 61 LQLKKLIGFSFNNLSQADKFTFDGNKVTKTKLKGNGDFSSDESIEVLKQADIVVTNPPFS 120 Query: 121 LFQDFVCLLAEHGKQFLVLGHNGAVGYNQIFKLFKEEQLWYGHTVNSSMLFQVQSNFKLY 180 LFQ F+ LL +H KQFLVLG N AV YN IF FK +LW+G+TVN +M F V S+++LY Sbjct: 121 LFQSFIDLLIQHNKQFLVLGLNAAVSYNHIFTYFKTNKLWFGYTVNKTMSFSVNSDYQLY 180 Query: 181 DPKSVNFVKKDGQLFQKVPGISWFTNLKKNQQPAWLKTKSRYQGNEHKYPKFDWYDAIFV 240 +PK+ NF K+G+ FQK+ GISWFTNL K +L T Y+ NE YPKFDWYDAI+V Sbjct: 181 NPKTSNFFTKNGKCFQKIAGISWFTNLGKPHYNPFLNTNCFYKNNEKNYPKFDWYDAIYV 240 Query: 241 SKVKEIPLDWFGYMGVPLTFLNCFNPKQFELIDCLANPYATLDTLKTNAYVRSHHGDVRN 300 +K+K IP+DW G MGVPLTFLNC+NPKQFEL+DCLANPYATLDTLKTNA+V+ + GDVRN Sbjct: 241 NKIKNIPMDWNGLMGVPLTFLNCYNPKQFELVDCLANPYATLDTLKTNAFVKLNQGDVRN 300 Query: 301 VKGKRRYVRVVIKQRQ 316 V GKRRYVRV+IK++Q Sbjct: 301 VNGKRRYVRVIIKKQQ 316 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507938|ref|NP_109887.1| hypothetical protein MPN199 [Mycoplasma pneumoniae M129] (760 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 436 e-124 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 434 e-123 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 436 bits (1120), Expect = e-124, Method: Compositional matrix adjust. Identities = 285/723 (39%), Positives = 396/723 (54%), Gaps = 92/723 (12%) Query: 1 MKFKLFL--GSSFFGVATLLIACGT-GRFDQIDDGKIKLAV-VTSPSAASSLQTLLDQYN 56 MK K FL G S FG + LL+AC +FDQ+DDGKIKLA +TS AA +L+T++ +YN Sbjct: 1 MKLKGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYN 60 Query: 57 NTKAPADYPVEVVSLDSTGSYTKGKFDTQKRLAAKDKNNFYNLTFNYPDLVSSLAINGME 116 +TK P DYP+E+V + G Y GK D Q +++ KDKNNFYNL NYP++VS+L+ + M Sbjct: 61 DTKDPGDYPIEIVQI--AGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMA 118 Query: 117 LNLDGVNVSNFEQSFLDFNKNISGVRKPGIYALPATMSGEVLVLNGPVLHYILNSAKKKD 176 LN DGVNV +FL FN I G+R GIYA+P +MS +++V+NGPVLHYILNSA+K + Sbjct: 119 LNFDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARK-E 177 Query: 177 GTESKIKTAQLKTASTQAEVKGTMTMASDEQTTKLWTNIQNAAKENAANGTTEKAEKTVS 236 GT T+ + TVS Sbjct: 178 GTP-----------------------------------------------TSTTVQATVS 190 Query: 237 ASSLQLKNTNKTTEGTLKIGTDDNTKNLWKKIEDAAKTNGEKGNEKQEATQSNASASLVK 296 + S + K GTL+I D T LW+ I+ A+ N + ++Q+ + ++S+S Sbjct: 191 SRSAEKK-------GTLEIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSS--- 240 Query: 297 LDQKNTSQDKTQNTQTSDDEIKKSWGEYKEVEGGLKGYEFKADVFESWEKLNDFAVRVAX 356 ++ +T++T SD++IK+ WGEY+EV+GGLK + FKA +FE+W + DFA R+A Sbjct: 241 --STTSTTGETKDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDFATRIAN 298 Query: 357 X--XXXXXXXXXXXXDIQGVFGIGSLENALYTASFAAGGGDYNNFLFNIKK--GRADFSN 412 D+QGV G+ S NALY A FAAG +Y+NF FNI K G AD+SN Sbjct: 299 SFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYADYSN 358 Query: 413 FFNHNSKTFQSLRDIFNSFKPLIDQKGLISNKHFDTPVNNYAKFHQLAFYVSSTARFPYS 472 F N +S ++Q+L ++N F LI GL N+ + +N+ KFHQLAF VSS+ + Y Sbjct: 359 FLNKDS-SYQNLESVYNDFYKLIQANGLFVNRG-GSYSSNFEKFHQLAFSVSSSGGYSYY 416 Query: 473 FAKDNVKRLIIGKRELEVNPKSMFAIKKEXXXXXXXXXXXKVALDNNKSIELYENNIPNG 532 FAKDN KRL +E P I+ L + K I LY+ +IP+G Sbjct: 417 FAKDNAKRLKFSNYAIEY-PSFTQTIQAPNSSETESNLLGTFKL-SEKDINLYKGSIPSG 474 Query: 533 K---TDAILIKNQTLISALKNPXXXXXXXXXXXXXXXXXDAICYLAFNSKIRPDDKDIFL 589 K DAILI N LI+ L+ + I + + D+++IF Sbjct: 475 KQQGVDAILISNPNLINILE----QAKQKNTAQGSESTTNKIIGYTTTANVNVDNQNIFS 530 Query: 590 LDKFG-EKFVT-AIVNFEEKTEVKINTLQEKEAVVLPAPQKFKPTDPKSVALVQGPSLIG 647 + K E+F IVN E+T + TLQ E++VLP P K+K TD V + QGP+LIG Sbjct: 531 VSKLNNEQFQRKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIG 590 Query: 648 IHANANEDRSTIKFLNWYLNAEV-DW--------KDGEKKTPAEYLAEKASYLLPFKKVL 698 IHAN E+ T KF+NW+LN + DW D KT AEY ++ASY+LP K+ Sbjct: 591 IHANEKENIETKKFVNWFLNQSITDWNSNNQQKNSDQTTKTAAEYFTDQASYILPLKEKF 650 Query: 699 EKS 701 KS Sbjct: 651 NKS 653 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 434 bits (1116), Expect = e-123, Method: Compositional matrix adjust. Identities = 234/458 (51%), Positives = 295/458 (64%), Gaps = 22/458 (4%) Query: 245 TNKTTEGTLKIGTDDNTKNLWKKIEDAAKTNGEKGNEKQEATQSNASASLVKLDQKNTSQ 304 +N + +GT+ + +D T +LW K+E AAK N + NE Q +SN+S S Sbjct: 189 SNNSNKGTMVVASDSETSSLWTKLEAAAKMNAQT-NETQ-VLKSNSSES----------- 235 Query: 305 DKTQNTQTSDDEIKKSWGEYKEVEGGLKGYEFKADVFESWEKLNDFAVRVAXXXXXXXXX 364 TQ SD EIKK WG+Y+EV+GGLK Y FKA VF +W+ LNDFA R+A Sbjct: 236 ---NQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLNDFATRIAKSFTKLQTT 292 Query: 365 XXXXXDIQGVFGIGSLENALYTASFAAGGGDYNNFLFNIKKGRADFSNFFNHNSKTFQSL 424 ++Q VFGIGSLENALYTA FA+G DYNNFLFNIK R +FSNFFN +S FQ+L Sbjct: 293 TKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRINFSNFFNKSSTAFQNL 352 Query: 425 RDIFNSFKPLIDQKGLISNKHFDTPVNNYAKFHQLAFYVSSTARFPYSFAKDNVKRLIIG 484 + IFNSFK LIDQ GLISN HF+TPVN+YAKF+QLAFY SSTARFPYSFA D+VKRLI+ Sbjct: 353 KTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTARFPYSFASDSVKRLIVN 412 Query: 485 KRELE-VNPKSMFAIKKEXXXXXXXXXXXKVALDNNKSIELYENNIPNGK---TDAILIK 540 + +E N KS+F + V+L+N+K + LYE + + K DA+LIK Sbjct: 413 DKTIENKNNKSVFEVNLSSDSDNNSNLIGTVSLENSKQVSLYEKQVDSNKQIGVDALLIK 472 Query: 541 NQTLISALKNPXXXXXXXXXXXXXXXXXDAICYLAFNSKIRPDDKDIFLLDKFGEKFVTA 600 ++TLI+ LK+ + +LAF + + D K IF + K K Sbjct: 473 DETLINHLKSLKSQVSAKSASETSQTKQNK-TFLAF-TTVNADQKAIFDVGKLNGKTAKI 530 Query: 601 IVNFEEKTEVKINTLQEKEAVVLPAPQKFKPTDPKSVALVQGPSLIGIHANANEDRSTIK 660 I+N E T KI+TLQEKEA+VL APQ+F+ TDP +ALVQGPSLIGIHAN ED T K Sbjct: 531 IINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKK 590 Query: 661 FLNWYLNAEVDWKDGEKKTPAEYLAEKASYLLPFKKVL 698 F+NWYLN +V W++ KTPAEY+A+KASYLLPFK L Sbjct: 591 FVNWYLNTKVQWEENSIKTPAEYVADKASYLLPFKNRL 628 Score = 241 bits (615), Expect = 2e-065, Method: Compositional matrix adjust. Identities = 138/232 (59%), Positives = 164/232 (70%), Gaps = 9/232 (3%) Query: 1 MKFKLF-LGSSFFG-VATLLIAC-GTGRFDQIDDGKIKLAVVTSPSAASSLQTLLDQYNN 57 MKFKLF L SS G +A AC RFDQ+DDGKIKLA VTS SA+ SL T++ +YN+ Sbjct: 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLATVTSASASGSLTTIISKYNS 60 Query: 58 TKAPADYPVEVVSLDSTGSYTKGKFDTQKRLAAKDKNNFYNLTFNYPDLVSSLAINGMEL 117 K P DYPVE+VSLDS GSY+ GK D Q +L AKDKNNFYNLTFNY D+VS L+ + MEL Sbjct: 61 QKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQMEL 120 Query: 118 NLDGVNVSNFEQSFLDFNKNISGVRKPGIYALPATMSGEVLVLNGPVLHYILNSAKKKDG 177 + D V+ SNF+ SFL FN NIS V IYALPAT+SGEVLVLNGPVLHYIL+SAKK Sbjct: 121 SFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDSN 180 Query: 178 TESKIKTAQLKTASTQAEVKGTMTMASDEQTTKLWTNIQNAAKENAANGTTE 229 T T +AS + KGTM +ASD +T+ LWT ++ AAK NA T+ Sbjct: 181 T-----TLSTHSASNNSN-KGTMVVASDSETSSLWTKLEAAAKMNAQTNETQ 226 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507939|ref|NP_109888.1| hypothetical protein MPN200 [Mycoplasma pneumoniae M129] (798 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 681 0.0 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 495 e-142 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/849 (45%), Positives = 517/849 (60%), Gaps = 135/849 (15%) Query: 1 MKFKYGAIVFSGLLGVSAILAACGTRGKFDQIDDGKIKLASSLTSKGAANALQAIVKKYN 60 MK K V + G S +L AC +FDQ+DDGKIKLASSLTSK AA AL+ +VKKYN Sbjct: 1 MKLKGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYN 60 Query: 61 EVKKPGDYPIEITQIAGGYDQARVDLQSRVGVKDKTNFYNLILNYPDVVSVLARNQMELP 120 + K PGDYPIEI QIAGGYD + D+Q++V KDK NFYNLILNYP++VS L+R++M L Sbjct: 61 DTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALN 120 Query: 121 FDGVDVSKISPNFLNFNERISGVSKKANYAIPVSVSTDILVLNGPVLHYILNSAKGE--- 177 FDGV+V K+ PNFL+FN RI G+ YAIP+S+STD++V+NGPVLHYILNSA+ E Sbjct: 121 FDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTP 180 Query: 178 -SKGAQKDNKSAEVQRKSTGQKTVTQPLTIATDSATNGLWKKIEDAAKVNGXXXXXXXXX 236 S Q S ++K T L IA DS T LW+ I+ A+ N Sbjct: 181 TSTTVQATVSSRSAEKKGT--------LEIANDSETTKLWQNIQTTAQNNSNETTKEQKQ 232 Query: 237 XXXXATEGTQTTKENTGGDAATSDTKIKESWGAYQEVEGGLKGYQFKAIVFENWHDLIDF 296 ++ + T+ D SD KIKE WG YQEV+GGLK + FKA +FENW++ +DF Sbjct: 233 VKRSSSSSSTTSTTGETKDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDF 292 Query: 297 STRVAKSF-SKVKDNSNKKGNEIQGVLGVDNSPNALLSSVFAAGNSDYNNFFYKV--QNG 353 +TR+A SF KVK+ +NK G ++QGVLGVD+S NAL ++VFAAG ++Y+NFF+ + + G Sbjct: 293 ATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTG 352 Query: 354 RADFSNFNNKGSSYKNLKNVFNDYKNLIAQNGLYVNKGGSYSSNFQKFHQLAYSISSTSG 413 AD+SNF NK SSY+NL++V+ND+ LI NGL+VN+GGSYSSNF+KFHQLA+S+SS+ G Sbjct: 353 YADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSGG 412 Query: 414 FAYSFAGQNSKRFKFTDDGTFVEYPSYTTEVNAPESNNGNDGKQQGQSDQGNLLGTFEVV 473 ++Y FA N+KR KF++ +EYPS+T + AP S+ + NLLGTF++ Sbjct: 413 YSYYFAKDNAKRLKFSNYA--IEYPSFTQTIQAPNSS----------ETESNLLGTFKLS 460 Query: 474 DKSTSDIKVKPKTQAESKKSSDSKQTANTGKGSNSKQQTPKKTISLYKTKIPQDKTENVD 533 +K I+LYK IP K + VD Sbjct: 461 EKD----------------------------------------INLYKGSIPSGKQQGVD 480 Query: 534 AFLVTDSELISXXXXXXXXXXXXXASGKSASARVAVQATQKK-----QSNEKQIVGYTTT 588 A L+++ LI+ + QA QK +S +I+GYTTT Sbjct: 481 AILISNPNLIN----------------------ILEQAKQKNTAQGSESTTNKIIGYTTT 518 Query: 589 SALSEDGKHIFKLGKLNSENYERKIIVGATVETLEQSTTLQSEEAIVLAAPGKYKDSDQK 648 + ++ D ++IF + KLN+E ++RKIIV AT ETL+QS TLQS E+IVL PGKYK +D+ Sbjct: 519 ANVNVDNQNIFSVSKLNNEQFQRKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKN 578 Query: 649 RVMITQGPNLIGVHANTKENEETKKFVNWFLNKT-ESWEVKGNGKDS-QTTKSLTPAQYF 706 +VMITQGPNLIG+HAN KEN ETKKFVNWFLN++ W K+S QTTK T A+YF Sbjct: 579 KVMITQGPNLIGIHANEKENIETKKFVNWFLNQSITDWNSNNQQKNSDQTTK--TAAEYF 636 Query: 707 AESASYILPLKETVEKD-------------------------------------HKEQTN 729 + ASYILPLKE K K N Sbjct: 637 TDQASYILPLKEKFNKSSDLELKGSSSSSNLTTSSASASLLISNNSSTASSPAPKKTNNN 696 Query: 730 KNTYVAKALEMLKEVSENKSVSYSDPSDFRSGRFRDALGANFNATINSKANFEKFFQGFK 789 NT+ AKALE+ ++ + N+ + +SDPSDFR+G FR+ + ++FNA +NSK +F +F Q F Sbjct: 697 SNTFTAKALELFQQAANNEIIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFI 756 Query: 790 AALGSDFDK 798 +LGS F + Sbjct: 757 NSLGSGFRR 765 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 495 bits (1274), Expect = e-142, Method: Compositional matrix adjust. Identities = 318/803 (39%), Positives = 448/803 (55%), Gaps = 114/803 (14%) Query: 1 MKFKYGAIVFSGLLGVSAILAACGTRGKFDQIDDGKIKLASSLTSKGAANALQAIVKKYN 60 MKFK + S L ++ AC +FDQ+DDGKIKLA+ +TS A+ +L I+ KYN Sbjct: 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKYN 59 Query: 61 EVKKPGDYPIEITQI--AGGYDQARVDLQSRVGVKDKTNFYNLILNYPDVVSVLARNQME 118 K P DYP+E+ + G Y + DLQ+++ KDK NFYNL NY DVVS+L+R+QME Sbjct: 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query: 119 LPFDGVDVSKISPNFLNFNERISGVSKKANYAIPVSVSTDILVLNGPVLHYILNSAKGES 178 L FD VD S P+FL+FN IS V+ + YA+P +VS ++LVLNGPVLHYIL+SAK +S Sbjct: 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDS 179 Query: 179 KGAQKDNKSAEVQRKSTGQKTVTQPLTIATDSATNGLWKKIEDAAKVNGXXXXXXXXXXX 238 + ++ K T + +A+DS T+ LW K+E AAK+N Sbjct: 180 NTTLSTHSASNNSNKGT--------MVVASDSETSSLWTKLEAAAKMNAQ---------- 221 Query: 239 XXATEGTQTTKENTGGDAAT--SDTKIKESWGAYQEVEGGLKGYQFKAIVFENWHDLIDF 296 T TQ K N+ T SDT+IK+ WG YQEV+GGLK Y FKA VF NW DL DF Sbjct: 222 ---TNETQVLKSNSSESNQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLNDF 278 Query: 297 STRVAKSFSKVKDNSNKKGNEIQGVLGVDNSPNALLSSVFAAGNSDYNNFFYKVQNGRAD 356 +TR+AKSF+K++ + KKG E+Q V G+ + NAL +++FA+G +DYNNF + ++N R + Sbjct: 279 ATRIAKSFTKLQ-TTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRIN 337 Query: 357 FSNFNNKGSS-YKNLKNVFNDYKNLIAQNGLYVNKGGSYSSN-FQKFHQLAYSISSTSGF 414 FSNF NK S+ ++NLK +FN +K+LI QNGL N + N + KF+QLA+ SST+ F Sbjct: 338 FSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTARF 397 Query: 415 AYSFAGQNSKRFKFTDDGTFVEYPSYTTEVNAPESNNGNDGKQQGQSDQGNLLGTFEVVD 474 YSFA + KR D + EVN ++ N NL+GT + Sbjct: 398 PYSFASDSVKRLIVNDKTIENKNNKSVFEVNLSSDSDNN----------SNLIGTVSL-- 445 Query: 475 KSTSDIKVKPKTQAESKKSSDSKQTANTGKGSNSKQQTPKKTISLYKTKIPQDKTENVDA 534 NSKQ +SLY+ ++ +K VDA Sbjct: 446 -------------------------------ENSKQ------VSLYEKQVDSNKQIGVDA 468 Query: 535 FLVTDSELISXXXXXXXXXXXXXASGKS-ASARVAVQATQKKQSNEKQIVGYTTTSALSE 593 L+ D LI+ S KS SA+ A + +Q KQ+ K + +TT +A Sbjct: 469 LLIKDETLINHLK-----------SLKSQVSAKSASETSQTKQN--KTFLAFTTVNA--- 512 Query: 594 DGKHIFKLGKLNSENYERKIIVGATVETLEQSTTLQSEEAIVLAAPGKYKDSDQKRVMIT 653 D K IF +GKLN + KII+ AT T + +TLQ +EAIVL AP +++ +D + + Sbjct: 513 DQKAIFDVGKLNGKT--AKIIINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALV 570 Query: 654 QGPNLIGVHANTKENEETKKFVNWFLNKTESWEVKGNGKDSQTTKSLTPAQYFAESASYI 713 QGP+LIG+HAN +E+ ETKKFVNW+LN WE + K TPA+Y A+ ASY+ Sbjct: 571 QGPSLIGIHANEREDIETKKFVNWYLNTKVQWE-------ENSIK--TPAEYVADKASYL 621 Query: 714 LPLKETVEKDHKEQTNKNTYVAKALEMLKEVSENKSVSYSDPSDFRSGRFRDALGANFNA 773 LP K + N N+Y + + ++ +++P+DF S + RD + +N NA Sbjct: 622 LPFKNRLN-------NTNSYNEFVKTAVSQFADKNVTKFAEPADFLSNKVRDGVKSNLNA 674 Query: 774 TINSKA-NFEKFFQGFKAALGSD 795 IN+ + +F+ F LGSD Sbjct: 675 AINNHSIDFDSFINDLTDYLGSD 697 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507940|ref|NP_109889.1| hypothetical protein MPN201 [Mycoplasma pneumoniae M129] (238 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507941|ref|NP_109890.1| hypothetical protein MPN202 [Mycoplasma pneumoniae M129] (313 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 176 2e-046 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 176 bits (447), Expect = 2e-046, Method: Compositional matrix adjust. Identities = 107/209 (51%), Positives = 137/209 (65%), Gaps = 22/209 (10%) Query: 30 QVQTSGQNLSDTNYTNLSPNFTPTSDWPNALSFTNKNNAQRAQLFLHGLLGSIPVLVNKS 89 +V SG + T Y L + +PTSDW NAL+FTNKNN QR QL L LLG+IPVL+NKS Sbjct: 867 KVTPSGGSSKPTTYPALPNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLINKS 926 Query: 90 GENNEKF-QATDQKWSYTELKSDQTKLNLPAYGEVNGLLNPALVETY--FGTTRTSSTAN 146 G++N++F + ++QKW TE NLP +GEVNGL N AL+ TY FGT N Sbjct: 927 GDSNDQFNKDSEQKWDKTETNEG----NLPGFGEVNGLYNAALLHTYGFFGT-------N 975 Query: 147 QNSTTVPGIGFKIPEQNNDSKAVLITPGLAWTPQDVGNLVV-SGTSFSFQLGGWLVSFTD 205 NST P IGFK + ++ S + L+ GL WT QDVGNLVV + TSF FQLGGW ++FTD Sbjct: 976 TNSTD-PKIGFKA-DSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTD 1033 Query: 206 FVKPRAGYLGLQLTGLDASDATQRALIWA 234 F++PR GYLG+ L+ L + +IWA Sbjct: 1034 FIRPRTGYLGITLSSLQ-----DQTIIWA 1057 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507942|ref|NP_109891.1| hypothetical protein MPN203 [Mycoplasma pneumoniae M129] (127 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507943|ref|NP_109892.1| hypothetical protein MPN204 [Mycoplasma pneumoniae M129] (148 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507944|ref|NP_109893.1| hypothetical protein MPN205 [Mycoplasma pneumoniae M129] (438 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 243 2e-066 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 243 bits (621), Expect = 2e-066, Method: Compositional matrix adjust. Identities = 151/394 (38%), Positives = 200/394 (50%), Gaps = 62/394 (15%) Query: 39 YDLAGRALYDLDFSKL-NPQTPTRDANCQITFNPFGGFGLSGSAPQQWNEVKNKVPVEVA 97 YD GRALYD++ +K+ NP T R N + F+PF GFGL+G+AP WNE+K KVPVEV Sbjct: 133 YDNNGRALYDINLAKMENPSTVQRGLNGEPIFDPFKGFGLTGNAPTDWNEIKGKVPVEVV 192 Query: 98 QDPTDPYRFAVLLVPRSVVYYEQLQRGLALPNXXXXXXXXXXNTTIGAYGLKVKNAEADT 157 Q P P + VLLVP+ + Y L + + N T L+ + D+ Sbjct: 193 QSPHSPNLYFVLLVPKVALEYHNLNNQVVKESLEVKATQSSFNPT---QRLQKDSPVKDS 249 Query: 158 AKSNEKLQGDEXXXXXXXXXXXXXXXXXXXXXDTXXXXXXXXXXXXSDSEDNGQLQLEKN 217 +K EKL T S S+ L KN Sbjct: 250 SKQGEKLS-----------ETTASSMSSGMATSTRAKALKVEVERGSQSD-----SLLKN 293 Query: 218 DLANAPIKRGEESGQSVQLKAD-DFGTAXXXXXXXXXXXXXXXTPWRPWLATEQIHKDLP 276 D A P+K SG+ V+L+A+ +F A W+P L T+QI ++ Sbjct: 294 DFAKKPLKHKNSSGE-VKLEAEKEFTEA-----------------WKPLLTTDQIARE-K 334 Query: 277 KWSASILILYDAPYARNRTAIDRVDHLDPKVMTANYPPSWRMPKWNHHGLWDWKARDVLF 336 A+++ YDAPY+ N TA VDH+DPK M NYPPSW+ PKWNHHG+WD+ AR++L Sbjct: 335 GMGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKTPKWNHHGIWDYNARNLLL 394 Query: 337 QTTGF------------DESNTSNTKQGFQKEADSD---------KSAPIALPFEAYFAN 375 QTTGF ++ NT GF K D+D S+PIALPFEAYFAN Sbjct: 395 QTTGFFNPRRHPEWFDEGQAKADNTSPGF-KVGDTDHKKDGFKKNSSSPIALPFEAYFAN 453 Query: 376 IGNLTWFGQALLVFGGNGHVTKSAHTAPLSIWLY 409 IGN+ G ++ +FGGNGH TK T PLSI ++ Sbjct: 454 IGNMVAIGNSVFIFGGNGHATKMFTTNPLSIGVF 487 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507945|ref|NP_109894.1| hypothetical protein MPN206 [Mycoplasma pneumoniae M129] (113 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507946|ref|NP_109895.1| PTS system, glucose-specific IIABC component [Mycoplasma pneumoniae M129] (940 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072731.1| PTS system, glucose-specific IIABC component (p... 1320 0.0 >ref|NP_072731.1| PTS system, glucose-specific IIABC component (ptsG) [Mycoplasma genitalium G-37] Length = 908 Score = 1320 bits (3415), Expect = 0.0, Method: Compositional matrix adjust. Identities = 671/928 (72%), Positives = 749/928 (80%), Gaps = 28/928 (3%) Query: 17 LSNIRNKWKNRNRGSFRQWVGKLSNGLMIPIAVLPIAGIFLGVGDAIAGNAGDLTGLRYF 76 L IRNK+K RNRGSFRQWVGKLSNGLMIPIAVLP+AGIFLG+GDAI+ N+ + G+++F Sbjct: 5 LVKIRNKFKQRNRGSFRQWVGKLSNGLMIPIAVLPLAGIFLGIGDAISSNSSGIVGVKFF 64 Query: 77 GLFIKNGGDVVFANLPILFAIAIAITFSQDAGVAGFSAFVFWAAMNGFMSSLILPFDKAG 136 G FIK GG+VVFANLPILFA+AIAITFSQDAGVAGFSAFVFWA MN FMSSLI+P Sbjct: 65 GEFIKQGGNVVFANLPILFAVAIAITFSQDAGVAGFSAFVFWATMNAFMSSLIIP----- 119 Query: 137 KIITDTSTPIAGFKVLYNKSVPVHAIATTLGLRTLSTSVFGGIIVGALTSVLYKKFYAIR 196 D + +G+ +LY K+VP AIA+TLGL +LSTSVFGGIIVGALT+ LY KFYAIR Sbjct: 120 ---VDANNTASGYNILYWKAVPQSAIASTLGLNSLSTSVFGGIIVGALTAYLYNKFYAIR 176 Query: 197 LPDVIGFFSGTRFVPIICFVVAIPVALILLMIWPAVSIGLNAIXXXXXXXXXXXXXANSL 256 LPDVIGFFSGTRFVPIIC +AIPVAL+LLM+WP VSI LN I ANSL Sbjct: 177 LPDVIGFFSGTRFVPIICMTIAIPVALLLLMVWPGVSILLNLIGTGLGILGGRGYGANSL 236 Query: 257 IFGYIERSLIPFGVHHAFYAPLWYTSAGGSLQEIVNQQVWIRPDFHLSDNYVARVIGWVD 316 IFGYIER+LIPFGVHHAFYAPLWYTSAGGSLQEI NQQVWIR +YV RVIGW D Sbjct: 237 IFGYIERALIPFGVHHAFYAPLWYTSAGGSLQEIANQQVWIRAP---GSDYVTRVIGWED 293 Query: 317 PNNSSMYIIPGAL-NGQNGSSTGNTMS-KDLNGALSAYMSKESTAFLTWKDLVDGLTFKG 374 N ++IP AL NG +G G T + +D ALS YMSKEST FL+WK+LVDGLT KG Sbjct: 294 FNTPGKWVIPAALANGTSGMMNGATTTGQDSTSALSKYMSKESTNFLSWKELVDGLTRKG 353 Query: 375 NFDKMAENGLLDGSNKIWXXXXXXXXXXXXXXXXXXNVYTITFKTFANTTPIAWSKGAQA 434 NFD++A+NGLLDGSNKIW YTITFKTFANTTP WS GA A Sbjct: 354 NFDELAKNGLLDGSNKIWIGLNQSGILGKKVLLSDGKDYTITFKTFANTTPTFWSHGAHA 413 Query: 435 VLPLNASSTIVNNPXXXXXXXXXXXXXXXIKLYPVNSFRVAVESLNPAQYSQGKFPFMLF 494 +LP++ + + + N K Y V+ F VAV SLNPAQYSQGKFPFML Sbjct: 414 LLPISGTPSAITNGVTVNGTANS-------KTYNVSQFTVAVPSLNPAQYSQGKFPFMLI 466 Query: 495 GIPAAGVAMILAAPKDRRKEAASIVGSAAFTSFLTGITEPFEFTFLFLAPWLFYGVHAVL 554 GIPAAG+AMILAAPK RRKEA+SI+GSAAFTSFLTGITEPFEFTFLFLAPWLFYG+HAVL Sbjct: 467 GIPAAGLAMILAAPKGRRKEASSIIGSAAFTSFLTGITEPFEFTFLFLAPWLFYGIHAVL 526 Query: 555 AAVSFWLMNILGANVGQTFSGSFIDFILYGALPDGRRWLANSYLVPIIGLFLAAIYFPTF 614 AAVSFWLMN+L ANVGQTFSGSFIDFILYGALPDGR WLANSYLVPIIG+FLA IYFPTF Sbjct: 527 AAVSFWLMNLLSANVGQTFSGSFIDFILYGALPDGRGWLANSYLVPIIGIFLALIYFPTF 586 Query: 615 YFLIKHFNLATPGRGGKLITKKEYLASKAAAKAEGVSGVAENFTQTQIEAGILLQAYGGK 674 YFL FNLATPGRGGKLITKKEYLA+KAA K + + NF QTQIEAG+LL+AYGG Sbjct: 587 YFLTIRFNLATPGRGGKLITKKEYLAAKAAQKTDQTTNT--NFNQTQIEAGMLLRAYGGS 644 Query: 675 ENIVELGACITKLRVTVKNPELVKEEPIKELGAAGVMRTTPTFFVAVFGTRAAVYKSAMQ 734 ENI ELGACITKLRVTVKNPELV E IK+LGAAGVMRTTPTFFVAVFGTRAAVYKSAMQ Sbjct: 645 ENIAELGACITKLRVTVKNPELVNETIIKDLGAAGVMRTTPTFFVAVFGTRAAVYKSAMQ 704 Query: 735 DIIQGKVNWEALQKVINTDQLAVEPKETTPPKEVMPV--VQDEIVILSPVNGTLKSLNQV 792 DIIQGKVNW LQKV++ + VE E P PV VQDEIVILSPVNGTLK L QV Sbjct: 705 DIIQGKVNWTELQKVLDKNDSTVEKPEIKP----TPVLKVQDEIVILSPVNGTLKPLTQV 760 Query: 793 PDETFKQKLVGEGVAIVPSDGHFKAPGEAGVKTELAFPGGHAYIFDIDGIKVMLHIGIDT 852 PD+TFK +LVG+G+AI+PSDGHFKAPG+ GVKTELAFP GHA+IFD+DG+KVMLHIGIDT Sbjct: 761 PDDTFKNRLVGDGIAILPSDGHFKAPGDVGVKTELAFPTGHAFIFDVDGVKVMLHIGIDT 820 Query: 853 VQINAKKQPGEPLEVFDIKTKQGEYTKEKSESVVEVDLKKLSKKYNPITPFVVMKESLEN 912 V+INA K+PGE LEVFD+KTKQGEYTK KSESVVEVDLKKL +KY+PITPF+VM+ESL+N Sbjct: 821 VKINADKKPGEQLEVFDVKTKQGEYTKLKSESVVEVDLKKLKRKYDPITPFIVMQESLDN 880 Query: 913 FKLVPIRQRGEIKVGQPIFKLVYKKSQA 940 FKLVPIRQRGEIKVGQP+FKL+YK ++ Sbjct: 881 FKLVPIRQRGEIKVGQPLFKLIYKDKKS 908 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507947|ref|NP_109896.1| ribosomal protein S2 [Mycoplasma pneumoniae M129] (294 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072732.1| ribosomal protein S2 (rpS2) [Mycoplasma genital... 441 e-126 >ref|NP_072732.1| ribosomal protein S2 (rpS2) [Mycoplasma genitalium G-37] Length = 284 Score = 441 bits (1135), Expect = e-126, Method: Compositional matrix adjust. Identities = 213/275 (77%), Positives = 242/275 (88%), Gaps = 2/275 (0%) Query: 12 TAKAELVSLAKLGEMRTHVGMVKRYWNPKMGFFIEPERKHNNDHFVLELQRQSLQTAYNY 71 T K ELVSL KL EMRT++GMVKRYWNPKMGFFIEPERKHNND L+LQ Q+L+TAYN+ Sbjct: 6 TEKPELVSLNKLSEMRTNIGMVKRYWNPKMGFFIEPERKHNNDLLKLDLQYQALKTAYNF 65 Query: 72 VKEVAQNNGQILFVGTKNDYVKKLVNNIAKRVDVAFITQRWLGGTLTNFKTLSISINKLN 131 +K+V +N+GQILFVGTKNDYVKKLV +IAKRV+VA+ITQRWLGGTLTNFKTLSISINKLN Sbjct: 66 IKDVVKNHGQILFVGTKNDYVKKLVIDIAKRVNVAYITQRWLGGTLTNFKTLSISINKLN 125 Query: 132 KLVEKQAENAADLTKKENLMLSREIERLEKFFGGVKSLKRLPNLLIVDDPVYEKNAVAEA 191 KLVE+Q +NA DLTKKENL+LSREIERLEKFFGGVK+LKRLPNL+++DDPVYEKNAV EA Sbjct: 126 KLVEQQKQNANDLTKKENLLLSREIERLEKFFGGVKNLKRLPNLIVIDDPVYEKNAVLEA 185 Query: 192 NILRIPVVALCNTNTNPELVDFIIPANNHQPQSTCLLMNLLADAVAEAKAMPTMFAYKPD 251 N L+IPVVALCNTNTNPELVDFIIPANNHQPQSTCLLMNLLADA+AEAK T++AYKPD Sbjct: 186 NSLKIPVVALCNTNTNPELVDFIIPANNHQPQSTCLLMNLLADAIAEAKGFETLYAYKPD 245 Query: 252 XXXXXXXXXXXXAPRQVVNRANSKQITSQRLNITR 286 RQV+NR+N++ IT+QRLNI R Sbjct: 246 EQIQIEIPPKQE--RQVINRSNTRNITNQRLNINR 278 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507948|ref|NP_109897.1| cation-transporting P-type ATPase [Mycoplasma pneumoniae M129] (872 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072733.1| cation-transporting P-type ATPase, putative [My... 1183 0.0 >ref|NP_072733.1| cation-transporting P-type ATPase, putative [Mycoplasma genitalium G-37] Length = 874 Score = 1183 bits (3060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/874 (66%), Positives = 678/874 (77%), Gaps = 2/874 (0%) Query: 1 MNKWTGLSAAAVLESRAQHGANLIPTKKLTPFWLLFLEQFKXXXXXXXXXXXXXXXXXXX 60 MN WTGLS A ++SR +HGAN +P KK TPFWLLFL+QFK Sbjct: 1 MNSWTGLSEQAAIKSRQEHGANFLPEKKATPFWLLFLQQFKSLVVILLLLASLLSFVVAI 60 Query: 61 XSGVNANWLFDHNLVIEWTQPFVILITVLANSLIGSIQEFKAQKSAHTLKSLTQPFTRVF 120 SG+ +NW F+H+L+IEW QPF+IL+TV ANSLIGSIQEFKAQKSA LKSLT+ FTRVF Sbjct: 61 VSGLRSNWNFNHDLIIEWVQPFIILLTVFANSLIGSIQEFKAQKSASALKSLTKSFTRVF 120 Query: 121 REEGLVSLPVGEVVVGDIIFLEAGDIIPADGKVLQANHLRCMESFLTGESVPVDKSVVNT 180 R L+S+ V EVVVGDIIF++AGDIIPADGK+LQ N+LRC+ESFLTGES PVDK++ + Sbjct: 121 RNGELISINVSEVVVGDIIFVDAGDIIPADGKLLQVNNLRCLESFLTGESTPVDKTIDSN 180 Query: 181 GGKGLLEQTNLLFSGAQVVFGSGVFEVTAVGLNTQVGQIVKTVDSSATKLSPLQQKLEKV 240 +LEQTNL+FSGAQVV+GSGVF+V AVG+ TQVG+I KTVD S TKLSPLQQKLEK+ Sbjct: 181 EKATILEQTNLVFSGAQVVYGSGVFQVEAVGIKTQVGKIAKTVDDSVTKLSPLQQKLEKI 240 Query: 241 GKWFSWXXXXXXXXXXXXXXXXXXXHNFSANWSXXXXXXXXXXXXXXPEGLVTFINVIFA 300 GKWFSW NF+ NWS PEGLVTFINVIFA Sbjct: 241 GKWFSWFGLGLFAVVFLVQTALLGFDNFTNNWSIALIGAIALVVAIIPEGLVTFINVIFA 300 Query: 301 LSVQKLTKQKAIIKYLAAIETLGGVQIICTDKTGTLTQNKMKVVDYFCFSNTTQTDLARA 360 LSVQKLTKQKAIIKYL+ IETLG VQIICTDKTGTLTQN+MKVVD+FCF++TTQTDLARA Sbjct: 301 LSVQKLTKQKAIIKYLSVIETLGSVQIICTDKTGTLTQNQMKVVDHFCFNSTTQTDLARA 360 Query: 361 LCLCNNATVNTNGDSTGDPTEIALLQWLDRDGLELNHYTRVYEKAFDSNRKLMSVVVQKD 420 LCLCNNA+++ + + TGDPTEIALL+W DR L+L Y RVYEKAFDS RKLM+VVVQKD Sbjct: 361 LCLCNNASISKDANKTGDPTEIALLEWKDRSQLDLKTYYRVYEKAFDSIRKLMTVVVQKD 420 Query: 421 NRFIVIVKGAHDVLLPLCKGLDS--NQIKPLIDERASNGLRNLAVGLKVLYCFDPENTQT 478 NRFIVIVKGA DVLLPLC + + I+ L+D+ A GLR LAV LKVLY FD + + Sbjct: 421 NRFIVIVKGAPDVLLPLCNNVQNEVKNIENLLDQSAGQGLRTLAVALKVLYKFDQNDQKQ 480 Query: 479 VNELESELDFLGSVSLQDPPRIESKAAIMACHQANITPIMITGDHLKTATAIAKELGILT 538 ++ELE+ L+FLG VSLQDPPR ESK AI+AC +ANITPIMITGDHLKTAT IAKELGILT Sbjct: 481 IDELENNLEFLGFVSLQDPPRKESKEAILACKKANITPIMITGDHLKTATVIAKELGILT 540 Query: 539 DERQAILGVDLDPAKIMEYRVFARVTPQQKLEIVNAWKQAGYTVAVTGDGVNDAPALVTS 598 + QA+LG +LD KI++YRVFARVTPQQKL IV+AWK+AG+TV+VTGDGVNDAPAL+ S Sbjct: 541 LDNQAVLGSELDEKKILDYRVFARVTPQQKLAIVSAWKEAGFTVSVTGDGVNDAPALIKS 600 Query: 599 DVGCCMGQTGVDIAKDAADVIISDDNFATIVNGIEQGRKTFLTCKRVLFNLFLTSIAGTI 658 DVGCCMG TGVDIAKDA+D+IISDDNFATIVNGIE+GRKTFLTCKRVL NLFLTSIAGT+ Sbjct: 601 DVGCCMGITGVDIAKDASDLIISDDNFATIVNGIEEGRKTFLTCKRVLLNLFLTSIAGTV 660 Query: 659 XXXXXXXXXXXXXREQLSKANHNFQVFTPTQLLIINLFVHGFPAVALAIQPVQEKLMLKP 718 + L + H+FQVF+PTQLLIINLFVHGFPAVALA+QPV+EKLM+ Sbjct: 661 VVLLGLFILGQVFKTNLLQQGHDFQVFSPTQLLIINLFVHGFPAVALAVQPVKEKLMVGS 720 Query: 719 FSTKNLFYNRGGFDLIWQXXXXXXXXXXXXXXGMVYAINDPELGKSGDLINRAGATCGFM 778 FSTKNLFYNR GFDLIWQ G++YAIN+ +L SGDLINRAG+TCGF Sbjct: 721 FSTKNLFYNRQGFDLIWQSLFLSFLTLLFYSLGIIYAINNRDLQTSGDLINRAGSTCGFF 780 Query: 779 VLGGSAALNSLNLMVDRPLVATNPKHYGIVWLGAXXXXXXXXXXXXXNPLGLVFSTLKDL 838 +LG SAALNSLNLMVD+PL+ TNP + +VW+G+ NPLGLVF+ L+DL Sbjct: 781 ILGASAALNSLNLMVDKPLLMTNPWFFKLVWIGSLASILVFLLIIFINPLGLVFNVLQDL 840 Query: 839 TAHPVLIGYSFGGVLLYMTINEVVKLIRLSYGSV 872 T HPVLI YSFGGV+LYM +NEVVKLIRL YG++ Sbjct: 841 TNHPVLISYSFGGVILYMGMNEVVKLIRLGYGNI 874 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507949|ref|NP_109898.1| preprotein translocase SecA [Mycoplasma pneumoniae M129] (808 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072734.1| preprotein translocase (secA) [Mycoplasma genit... 1437 0.0 >ref|NP_072734.1| preprotein translocase (secA) [Mycoplasma genitalium G-37] Length = 806 Score = 1437 bits (3719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 689/806 (85%), Positives = 744/806 (92%), Gaps = 1/806 (0%) Query: 1 MGLFNFLKLVSPRHRIYHKASKIANEVEGHKNYYRNLTDVQLLEESNKLVDLVTKQNYTI 60 M +FNFLKL+SP++RI KA++IA+EVE +KNYYRNLTD QL EESNKLVDLVTKQNYTI Sbjct: 1 MAIFNFLKLISPKNRILSKANRIASEVESYKNYYRNLTDQQLFEESNKLVDLVTKQNYTI 60 Query: 61 LDXXXXXXXXIREVVYRETGEFAYRVQIIGAYIVLIGDFAEMMTGEGKTLTIVLAAYVSA 120 LD IREVVYRETGEFAYRVQIIGA+IVL GDFAEMMTGEGKTLTIVLAAYVSA Sbjct: 61 LDVCVAALALIREVVYRETGEFAYRVQIIGAFIVLSGDFAEMMTGEGKTLTIVLAAYVSA 120 Query: 121 LEKRGVHVVTVNEYLAQRDATNATKILKRVGMTVGCNFANLAPHLKQAAFACDVTYTTNS 180 LEKRGVHVVTVNEYLAQRDA NA KILKRVGM+VGCNFANL+P LKQAAF CDVTYTTNS Sbjct: 121 LEKRGVHVVTVNEYLAQRDANNAMKILKRVGMSVGCNFANLSPQLKQAAFNCDVTYTTNS 180 Query: 181 ELGFDYLRDNMVHRFEDKKIRELHFAIVDEGDSVLIDEARTPLIISGPAKNEFAAYVAVD 240 ELGFDYLRDNMVH ++DKKIRELHFAIVDEGDSVLIDEARTPLIISGP+KNEF YVAVD Sbjct: 181 ELGFDYLRDNMVHSYQDKKIRELHFAIVDEGDSVLIDEARTPLIISGPSKNEFGLYVAVD 240 Query: 241 RFVKKLKEDEYKIDPESRAPALTELGIKHAEKNFKTDNLFALENSDLFHKIINALTAVKV 300 RFVK L E E+KIDPESRA +LTELGIK AE+ FK +NLFALENSDLFHKI+N LTAVKV Sbjct: 241 RFVKSLTEQEFKIDPESRAASLTELGIKKAEQTFKKENLFALENSDLFHKIMNGLTAVKV 300 Query: 301 FEQGKEYIVRDGKVLIVDHFTGRILEGRSYSNGLHQAVQAKEMVEIEPENVIVATITYQS 360 FEQGKEYIVRDGKVLIVDHFTGRILEGRSYSNGL QAVQAKE VEIEPENVIVATITYQS Sbjct: 301 FEQGKEYIVRDGKVLIVDHFTGRILEGRSYSNGLQQAVQAKEYVEIEPENVIVATITYQS 360 Query: 361 FFRLYNRLSAVSGTAFTESEEFLKIYNMVVVPVPTNRPNIRKDRADSVFGTPNIKWLAVV 420 FFRLYNRL+AVSGTA TESEEFLKIYNMVVVPVPTNRPNIRKDR+DSVFGTP IKW+AVV Sbjct: 361 FFRLYNRLAAVSGTALTESEEFLKIYNMVVVPVPTNRPNIRKDRSDSVFGTPQIKWMAVV 420 Query: 421 KEVKRIHETGRPILIGTANIDDSELLHNYLQEANIPHEVLNAKNHSREAEIVAKAGQKGA 480 KE+K+IHET RPILIGTANIDDSELLHN L EANIPHEVLNAKNHSREAEIV KAGQK A Sbjct: 421 KEIKKIHETSRPILIGTANIDDSELLHNLLLEANIPHEVLNAKNHSREAEIVTKAGQKNA 480 Query: 481 VTISTNMAGRGTDIRLGEGVAEMGGLYVLGTERNESRRIDNQLRGRAGRQGDRGETKFFI 540 VTISTNMAGRGTDIRLGEGVAEMGGLYVLGTERNESRRIDNQLRGRA RQGD+GETKFFI Sbjct: 481 VTISTNMAGRGTDIRLGEGVAEMGGLYVLGTERNESRRIDNQLRGRAARQGDKGETKFFI 540 Query: 541 SLGDALFKRFAHDRIERAITKLGNDTFDSSFFSKMLSRTQKRVEAINFDTRKNLIDYDHV 600 SLGD+LFKRFAHD+IERAI+KLGN+TFDS+FFSKMLSRTQKRVEAINFDTRKNLIDYDHV Sbjct: 541 SLGDSLFKRFAHDKIERAISKLGNETFDSAFFSKMLSRTQKRVEAINFDTRKNLIDYDHV 600 Query: 601 LASQRELIYKQRDKFLLATDLSDMIDKMLEKFVEQFCDQYRNPKNQNLVNHIALSEALNL 660 LASQRELIYKQRDKFLLA DLS+MIDKMLEKFV+QFCDQYRN KNQNL+NHIAL+EALNL Sbjct: 601 LASQRELIYKQRDKFLLANDLSEMIDKMLEKFVQQFCDQYRNQKNQNLINHIALAEALNL 660 Query: 661 ELNMHGVISPKLFENMTFDATVHKTHSLIGEKITNKVKVLTPPIALIRFREIMITAMDKH 720 E+NM I+PK+FENMTFD V KT +L+ +KI++KV VLT PIAL RFR+I+IT+MDKH Sbjct: 661 EMNMQNTINPKVFENMTFDVAVDKTRNLVAKKISDKVNVLTKPIALNRFRDIIITSMDKH 720 Query: 721 WIEHLDNVFKLREGVTLRSMEQTSPLNVYIRETDILFQTMLQKIARDVIIQIANLATPEE 780 W EHLD+VFKLREGV LRSME TSPLNVYI+ETDILF+TMLQKIA+DVI+QIANL TP+E Sbjct: 721 WTEHLDSVFKLREGVVLRSMEHTSPLNVYIKETDILFKTMLQKIAQDVIVQIANLTTPDE 780 Query: 781 FDEELMKANALKKLQALREAHEKSNE 806 FD LM+ANALKKL A++ A EKSN+ Sbjct: 781 FDHSLMQANALKKLAAIK-ADEKSNQ 805 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507950|ref|NP_109899.1| Helicase subunit of the DNA excision repair complex [Mycoplasma pneumoniae M129] (657 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072735.1| excinuclease ABC subunit B (uvrB) [Mycoplasma g... 1064 0.0 >ref|NP_072735.1| excinuclease ABC subunit B (uvrB) [Mycoplasma genitalium G-37] Length = 656 Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/656 (76%), Positives = 578/656 (88%), Gaps = 1/656 (0%) Query: 1 MKSPTKDSKLFHLKSNFAPTGDQPAAIAKLAEFQTNEQVLLGATGTGKTFTIANVIQKVQ 60 MK+ TK + LF L +N+ PTGDQP AI KL+EF+T +QVLLGATGTGKTFTIANVIQ Q Sbjct: 1 MKNQTKSNSLFQLSTNYIPTGDQPEAIKKLSEFKTKQQVLLGATGTGKTFTIANVIQNSQ 60 Query: 61 LPTVVIAHNKTLAGQLYQELKELFPNNAVEYFISYFDFYQPEAYLPAKGVYIEKSATVNE 120 LPTVVIAHNKTLAGQL+ ELK+LFP NAVEYFISYFDFYQPEAYLP+KG+YIEKSATVNE Sbjct: 61 LPTVVIAHNKTLAGQLFNELKQLFPKNAVEYFISYFDFYQPEAYLPSKGIYIEKSATVNE 120 Query: 121 EIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPADFAQYSLWLVVGKEYGLSELKTQLI 180 IKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSP+DF +Y LW VVGK+Y L +K +L+ Sbjct: 121 AIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPSDFVKYCLWFVVGKDYDLKTIKDRLV 180 Query: 181 HLNYVVNKQQLTPGKFRFQGDVVEVFPGYAQDYVLRLSFFDQQLEQIARIDPLTNKVLET 240 LNYVVNKQQLTPGKFRFQGDV+EVFPGY+ +V+R+SFFD ++EQI +IDPLTNK+L Sbjct: 181 SLNYVVNKQQLTPGKFRFQGDVLEVFPGYSDAFVIRISFFDTKVEQICQIDPLTNKILNQ 240 Query: 241 LNSFKLGPADEYIVNQNDLGVALDTIKAELKDRLKYFERLNFPERAQRLQTITEHDLADL 300 L K+GPADEY+VNQ+DL +A+ IK EL++R+ YF + N ERAQRL TIT HDL DL Sbjct: 241 LFEIKIGPADEYVVNQSDLDIAIKNIKQELQERVNYFNKQNLVERAQRLATITNHDLNDL 300 Query: 301 KAWGVCSGVENYARHLEHRPPHSKPYNIFDYFTKGEWLLVVDESHQTLPQIKGMYNTDIS 360 KAWG CSGVENYARHLE R +S PY+IFDYF KG+WLLV+DESHQTLPQ+ GMYNTD+S Sbjct: 301 KAWGFCSGVENYARHLELRMANSTPYSIFDYF-KGDWLLVIDESHQTLPQLNGMYNTDLS 359 Query: 361 RKQSLIEYGFRLPSALDNRPLSYEEFRQGINKVIYVSATPREEEIQLSHNNVVEQLVRPT 420 RKQSLI+YGFRLPSALDNRPLS+ E +Q + KVIYVSATPR++EI LS NNV+EQLVRPT Sbjct: 360 RKQSLIDYGFRLPSALDNRPLSFAELQQKMQKVIYVSATPRDKEISLSQNNVIEQLVRPT 419 Query: 421 YLLDPEVIVKPKDNQVEDLVSEIINQRKHNGRTFVTVLTIKMAENLTDFLKERNIKVAYI 480 YL+DP ++VKPKDNQVEDL+ EIINQR++N RTFVTVLTIKMAENLT++LKER IKVAYI Sbjct: 420 YLVDPIIVVKPKDNQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERKIKVAYI 479 Query: 481 HKDIKALERLILLTDLRKGEYECLVGINLLREGLDVPEVSLVAIFDADIPGLPRDERSLI 540 HKDIKALERL+L+ DLR+GEYECLVGINLLREGLDVPEV+LV IFDADIPGLPRDERSLI Sbjct: 480 HKDIKALERLLLINDLRRGEYECLVGINLLREGLDVPEVALVCIFDADIPGLPRDERSLI 539 Query: 541 QIIGRAARNVHGRVIMYANTISEQMDKAIKETQRRRTIQMAYNEQHHKTPMTVQKPITLN 600 QIIGRAARN HGRV+MYAN ++EQM KAI ET+RRRT+QM YN+ H+KTP TV KP+T Sbjct: 540 QIIGRAARNEHGRVVMYANHVTEQMQKAIDETKRRRTVQMEYNKLHNKTPKTVVKPLTFV 599 Query: 601 QPIKLKTKSSEQQKAALIKQLTKEMKQAAANQNYELAIEIRDSIFELEKQFRGKIK 656 QPIKLK KS+ ++ AALIKQLTKEMK+AAANQNYELAIEIRDSIFELEK+ KIK Sbjct: 600 QPIKLKAKSNAEKNAALIKQLTKEMKKAAANQNYELAIEIRDSIFELEKEIGSKIK 655 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507951|ref|NP_109900.1| hypothetical protein MPN212 [Mycoplasma pneumoniae M129] (135 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072736.1| hypothetical protein MG074 [Mycoplasma genitali... 77 7e-017 >ref|NP_072736.1| hypothetical protein MG074 [Mycoplasma genitalium G-37] Length = 137 Score = 77.0 bits (188), Expect = 7e-017, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 84/135 (62%) Query: 1 MRKLIKLNVIVFVLLYLGELFASLSFKLISCLKTRNQYSLNGYYALFVFVNIIQKMANSF 60 MR+ IKL+++VFVLL+L EL S +L++ +K R + S+ Y A +F+ Q +N+F Sbjct: 1 MRQFIKLSLLVFVLLFLSELICRFSLRLVNSIKARYKSSVFSYTACLLFLKSFQNFSNAF 60 Query: 61 QKLASSVVLFETEINEFLVLFTDTKNKREESEPVRQVSTTQEYHQVTLDQQHYFNHKLSD 120 QKLA+ V FE ++NE L +F +++ E + + Q ++++ KLSD Sbjct: 61 QKLANWVFWFENDVNELLSIFYFNFDQKSEKVDYNFFNGYKVTAQKVVEKEQLLTCKLSD 120 Query: 121 YFRLFKDKTFFFEII 135 Y+RLF+DKTF+FE+I Sbjct: 121 YYRLFRDKTFWFELI 135 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507952|ref|NP_109901.1| hypothetical protein MPN213 [Mycoplasma pneumoniae M129] (1030 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072737.1| 116 kDa surface antigen [Mycoplasma genitalium ... 897 0.0 >ref|NP_072737.1| 116 kDa surface antigen [Mycoplasma genitalium G-37] Length = 1024 Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/1011 (48%), Positives = 664/1011 (65%), Gaps = 29/1011 (2%) Query: 31 KTHQVEH-ESEQSDFQDIRFGLNSVKLPKAQPAAATRITVENGTDKLVNYKSSPQQLFLA 89 K HQ ++ E +Q+ +DIRFGLN+V++P P T + V N +V+YK +PQ+ FLA Sbjct: 32 KNHQQQNTEKQQNPIKDIRFGLNNVQVPNTIPLHQTVVEVTNN-KAIVDYKDAPQKFFLA 90 Query: 90 KNALKDKLQGEFDKFLSDAKAFPALTADLQEWVDQQLFNPNQSFFDLSAPRSNFTLSSDK 149 K+AL +KLQ EFDKFL AL ADL+EW+DQ LF PNQSFFDLSA + N TLS+ Sbjct: 91 KSALNNKLQVEFDKFLLRTGVINALNADLKEWIDQTLFIPNQSFFDLSANKLNLTLSNQS 150 Query: 150 KASLDFIFRFTNFTESVQLLKLPEGVSVVVDSKQSFDYYVNASAQKLLVLPLSLPDYTLG 209 + SLD F FTNF++ Q LKLP SVVV++ +S+ Y V A+ QKL VL S D+++G Sbjct: 151 EVSLDLEFIFTNFSDKNQPLKLPFDGSVVVNANESYTYSVKATLQKLKVLTYSRADHSVG 210 Query: 210 LNYMFDHITLNGKVVNKFSFNPFKTNLNLAFSNVYNGVDVFEAQKNLVGKGKYLNTHVKA 269 ++Y ++LNGK N FSFNPFK+N+N AF NVYN ++ FEAQ+ LVG+GK+LN V A Sbjct: 211 ISYAIPTVSLNGKTQNDFSFNPFKSNINFAFKNVYNALNPFEAQQYLVGQGKFLNQKVNA 270 Query: 270 EDVKKDVNANIKNQFDIAKIIAELMGKALKEFGNQQEGQPLSFLKVMDKVKEDFEKLFNL 329 +DVK D+N +I+ QF++AKI A L+GKA K+FG + GQPLS LKV+ + +F++LFN Sbjct: 271 DDVKNDINNHIETQFNVAKITATLLGKAFKQFGEHKNGQPLSLLKVLSGLNNEFKQLFNY 330 Query: 330 VRPGLGKFVKDLIQSSSQAENKITVYKLIFDNKKTILNLLKELSIPELNSSLGLVDVLFD 389 VRPGLG FV DLIQSSSQ+ NK TVY+L+F+NK TI++LL++L+I ELNS L +VD+LF+ Sbjct: 331 VRPGLGDFVSDLIQSSSQSSNKKTVYQLLFENKTTIIHLLQDLNISELNSVLPVVDILFE 390 Query: 390 GITDSDGLYERLQSFKDLIVPAVKTNEKTAALSPLIEELLTQKDTYVFDLIQKHKGILTN 449 GI ++ LY+R+QSFKDLIVPA+K +++ +L +I +L +TYVFDL+ ++K IL N Sbjct: 391 GINSAESLYQRIQSFKDLIVPALKADKQLKSLEAIILAVLDNPNTYVFDLVYQNKSILFN 450 Query: 450 LLKNFLADFQKSTPFMADQVAIFTELFDNEGAFDLFGEADFVDKIAELFLTKRTVKNGEK 509 LL +FL + + PF+ +Q I LF NE FDLF ADFV+KIA+LFL K+ V+ Sbjct: 451 LLSDFLKNTANTLPFLQEQFDIVNHLFANEAIFDLFSNADFVEKIADLFLAKQKVQEVNN 510 Query: 510 IETK-----DSLLVTSLKSLLGEKVAALGDLLDSYIFKNELLNRSVEVAKAEAKDTKGAT 564 TK DS+LV +LK L+G++++++ +LL+ YIF+NE LNR+ D+ + Sbjct: 511 DGTKSTKIVDSILVATLKGLVGDQLSSITELLNIYIFENEFLNRN---------DSNSSV 561 Query: 565 DYKKEQAKALKKLFKHIGENTLSKTNLDKITLXXXXXXXXXXXXXXXXXXXXXXXDVEYK 624 KK+Q +LK LF IG+ LS+TN++KITL +V+YK Sbjct: 562 --KKQQTDSLKNLFSVIGD-ILSETNVNKITLHAVKNNELLSLVETASTLKIKHLNVQYK 618 Query: 625 VELGNFEIKNGLIKAMLEFXXXXXXXXXXXXXXXXXGESYKAMKDKYIKEGFPGYGWAKG 684 V + FE+KN IK +L F E+YK ++ KY EGFPGY WAK Sbjct: 619 VLVDKFELKNSFIKELLNFFPDTKDITPTIKKVLFESENYKTLRKKYENEGFPGYHWAKF 678 Query: 685 VVPGAFESIENTFKSAIDKTKSIRDLFGDMLFGNDLSSVKETDSFITLGGSFDIKYGGEN 744 +VPG F S ENTF SAIDKTKSIRDLF DMLFG L SV ++DSFI + GSF +KY G+N Sbjct: 679 IVPGTFNSAENTFYSAIDKTKSIRDLFADMLFGKSLESVNDSDSFIKINGSFTLKYHGDN 738 Query: 745 LNVLPAYYSLINSEIGYQIIGVDTTIDATKVKVELKNKEYKGKSPAINGQVKLSQSFFNV 804 LN+LP Y+SLI +GYQI+ V+ IDA + EL+N + P I V+LS+S F V Sbjct: 739 LNLLPNYHSLITKNVGYQIVNVNFHIDARLLTAELQNTVFSNPKPVIKSPVELSKSLFEV 798 Query: 805 WTNMFDSITKQIFQKKYEFKDNIQVFARNEDNTSRLELDISDPEQRVIPFAFVDGFGIQL 864 W +F++ QI +K+Y FKDN++ F D +SRLE D+S P+QRVIPFAFVDG+ QL Sbjct: 799 WKTIFENSVNQILKKEYTFKDNLKFFPFKADGSSRLEFDLSKPDQRVIPFAFVDGYQFQL 858 Query: 865 KA--VDKNITKEAGNTEPKSPVIQLYEALNXXXXXXXXXXXXXXXLD---TKTQLGYLLK 919 K + TK+ N+ SPV++LY+A+ + K+QL +L Sbjct: 859 KKELIPNKETKKEANS---SPVLKLYDAVKRNDRQYRPNHHHDDLRNYPSLKSQLELILN 915 Query: 920 LGDNWSKDDYKSLIDDTIINNNYLEASFNSKITVDRLGIPIDLWLFKIWPKFNLEIPMQG 979 LGD ++ IDDT++N + SF S + V+ LGIPI+L+ F +W KFNLEIP+ G Sbjct: 916 LGDKLKANN--DFIDDTVVNALQYKTSFKSTLKVNSLGIPINLFFFTLWLKFNLEIPIDG 973 Query: 980 SLQLYSSSVIFPYGIYDTSVQDAAKIVKRLNFTDMGFKLNDPKPNFWFVGF 1030 SL L S +V+FPY +YDTS + +IV RLNFTD F L D PNFWFVGF Sbjct: 974 SLTLTSVNVVFPYSLYDTSSNEFTRIVDRLNFTDTNFYLKDAFPNFWFVGF 1024 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507953|ref|NP_109902.1| hypothetical protein MPN214 [Mycoplasma pneumoniae M129] (138 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072738.1| hypothetical protein MG076 [Mycoplasma genitali... 127 4e-032 >ref|NP_072738.1| hypothetical protein MG076 [Mycoplasma genitalium G-37] Length = 138 Score = 127 bits (320), Expect = 4e-032, Method: Compositional matrix adjust. Identities = 59/121 (48%), Positives = 77/121 (63%) Query: 1 MLGTQTTNSKPREYGGLIVSTIYIVLFFAILNLTVXXXXXXXXXXXXXXXXXXXXXXXXX 60 M+ Q NS EYGG++VS Y++LFF ILN+T+ Sbjct: 1 MVLNQNKNSNKAEYGGIVVSVFYLILFFLILNITIYFHKSTNFTVVVKNSVLTSFFVNLL 60 Query: 61 XXXXQGIVRLKTCDGARYEISKFNQYLKLGSIYAKPNISFDEYKAKSSSYRKQTRGFWWM 120 QGI RLKTCDG RYEISKFN+YLKLGS+YAKP +SF++Y+ +S++YR++T GFWWM Sbjct: 61 LVCLQGIFRLKTCDGMRYEISKFNRYLKLGSVYAKPLVSFNQYQDQSATYRQKTSGFWWM 120 Query: 121 N 121 N Sbjct: 121 N 121 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507954|ref|NP_109903.1| oligopeptide transport system permease protein OppB [Mycoplasma pneumoniae M129] (389 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072739.1| oligopeptide ABC transporter, permease protein ... 525 e-151 >ref|NP_072739.1| oligopeptide ABC transporter, permease protein (oppB) [Mycoplasma genitalium G-37] Length = 407 Score = 525 bits (1353), Expect = e-151, Method: Compositional matrix adjust. Identities = 268/392 (68%), Positives = 298/392 (76%), Gaps = 3/392 (0%) Query: 1 MFIVMTIVFFLVNSTGQTPLSATSSKDLEAVKTQLDAFGFNDPLIVRYGRYWQTLFS--- 57 MFIVM+IVFFLVN+TG PLSATS++D+ AV+ QL FGFNDP+IVRY RYW LFS Sbjct: 16 MFIVMSIVFFLVNATGNVPLSATSARDIAAVQAQLQEFGFNDPIIVRYFRYWAKLFSFQA 75 Query: 58 GSLGTYYSSPNQTIDQIVFGRVPNTLYVVLISFFIGSLLGIIFGMISGLFRGKLIDAVIN 117 +LG YY++PNQTI +IVF RVPNTLYVVLISF IGSLLGI GM+SGL RGK +DA IN Sbjct: 76 DALGIYYANPNQTIGEIVFARVPNTLYVVLISFLIGSLLGIFLGMVSGLNRGKFLDAAIN 135 Query: 118 VLVVLFVSIPSFVVXXXXXXXXXXFRLPPRFIXXXXXXXXXXXXXXXSIIPILSLVFYTS 177 VLVVLFVSIPSFVV LPPRFI SIIPILSLVFY+S Sbjct: 136 VLVVLFVSIPSFVVGLGLLKLAGFLNLPPRFINFDDAFFSFDRFLLASIIPILSLVFYSS 195 Query: 178 AAFTYRVRNEVVEVMNQDYIKTARSKGLSTFAVALYHIFRNSIIPSVPLFVXXXXXXXXX 237 AAFTYR+RNEVVEVMNQDYIKTA+SKGL FAVA YHIFRNSIIPS+PLFV Sbjct: 196 AAFTYRIRNEVVEVMNQDYIKTAKSKGLGMFAVARYHIFRNSIIPSIPLFVFGISGAFSG 255 Query: 238 XXXXXXLFGVQGVSRILIDSVQSNETNLVMFNIMFIQGIPLLASVFIELIYVLVDPRIRI 297 LFGVQGVSRILIDSVQ NETN+VMFNI+FIQGIPLLASVFIE IYVLVDPRIRI Sbjct: 256 GFIIESLFGVQGVSRILIDSVQVNETNMVMFNILFIQGIPLLASVFIEFIYVLVDPRIRI 315 Query: 298 ASAGGVSLWTKLKFVYLRQAWLRKWRRINHTNSHNVLFNSPQHRQLLELKAIDYKHNTIS 357 A++ VSL TKLKF+ R WL KW +IN N+ N++FNSP H QLLEL AIDYK T+ Sbjct: 316 ANSSNVSLLTKLKFLSSRHQWLMKWNKINSDNAQNIVFNSPLHHQLLELNAIDYKTKTVQ 375 Query: 358 LTEQQKTTLKIEPTANFVLLGTKCLKIITIHG 389 LT +QKT L I TANF+LLG KCLK+ TIHG Sbjct: 376 LTTEQKTALNISATANFILLGNKCLKLKTIHG 407 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507955|ref|NP_109904.1| oligopeptide transport system permease protein AmiD [Mycoplasma pneumoniae M129] (376 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072740.1| oligopeptide ABC transporter, permease protein ... 620 e-180 >ref|NP_072740.1| oligopeptide ABC transporter, permease protein (oppC) [Mycoplasma genitalium G-37] Length = 376 Score = 620 bits (1598), Expect = e-180, Method: Compositional matrix adjust. Identities = 301/376 (80%), Positives = 337/376 (89%) Query: 1 MDKHQKFDQSLFQRVDINVLKRSDQLIGKPTTNFVEIMKRLFQNKWXXXXXXXXXXXXXX 60 MD+++ FD +LF+RVDIN+LKR+DQLIGKPTTN +EI+KRLFQNKW Sbjct: 1 MDRNKSFDPNLFKRVDINLLKRNDQLIGKPTTNSIEIIKRLFQNKWAILFFLLIVVIVLL 60 Query: 61 XXXXPLASPYSAVTPVSNNALAQNLPPRYLWNGAGDIQVEKITARSIAEVAQSSGVLVGK 120 PL SP+SAVTPVS NALAQNLPPRYLW+ GDI V KITARSIAE++Q+SGVLVG Sbjct: 61 AIIVPLTSPFSAVTPVSTNALAQNLPPRYLWHKPGDILVHKITARSIAEISQASGVLVGT 120 Query: 121 LPEASSNPLATNVKYNIAPYQLAELKNYYPLLGTNGLGVDIWTLLWASMAKSLWIAIVVA 180 LP A+SNPLATNV+Y+IAP+QL EL+NY+PLLGTNGLG+DIWTLLWAS+AKSLWIA+VVA Sbjct: 121 LPSANSNPLATNVQYDIAPFQLQELRNYFPLLGTNGLGIDIWTLLWASVAKSLWIAVVVA 180 Query: 181 LVSMVFGTIYGAIAGSFVGRAADNIMSRIIEIIDLVPSILWIIVLGATFRFGGVKQFDDS 240 +++MVFGTIYGA+AGSFVG ADNIMSRIIEIID+VPSILWIIVLGATFRFGGVKQFDDS Sbjct: 181 IIAMVFGTIYGAVAGSFVGHMADNIMSRIIEIIDIVPSILWIIVLGATFRFGGVKQFDDS 240 Query: 241 VVIFTLIFVFWTWPAATTRIYILKNKDTEYIQAARTLGAKQIRIIFVHMLPVVTGRLAVV 300 VVIFTLIFVFWTWPA TTRIYILKNKDTEYIQAA+TLGA QIRIIFVHMLPVV GRLAVV Sbjct: 241 VVIFTLIFVFWTWPATTTRIYILKNKDTEYIQAAKTLGAHQIRIIFVHMLPVVFGRLAVV 300 Query: 301 FVSLIPAVIGYEASLVFLGLKPATEVGLGALLNQVTSSGNIALITSSIVSFAILTVSTRV 360 FVSLIPAVIGYEASLVFLGLKPAT++GLGALLNQVTSS N+ALI SSIVSFA+LTV+ R Sbjct: 301 FVSLIPAVIGYEASLVFLGLKPATDIGLGALLNQVTSSDNVALILSSIVSFAVLTVAART 360 Query: 361 FANALNDAIDPRVIRR 376 FANALNDAIDPRV++R Sbjct: 361 FANALNDAIDPRVVKR 376 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507956|ref|NP_109905.1| oligopeptide transport ATP-binding protein OppD [Mycoplasma pneumoniae M129] (423 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding prote... 579 e-167 ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding prote... 133 3e-033 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 71 2e-014 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 70 5e-014 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 69 6e-014 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 68 2e-013 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 63 4e-012 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 60 5e-011 >ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length = 402 Score = 579 bits (1492), Expect = e-167, Method: Compositional matrix adjust. Identities = 282/400 (70%), Positives = 317/400 (79%) Query: 1 MALKATNFFTEPEYKXXXXXXXXXXXXHVSFKVKDGIMQAVRGVDLKVKXXXXXXXXXXX 60 MALK +NFF + + + HV+FKVKDGI+ AVRG+DLKV+ Sbjct: 1 MALKRSNFFVDKDQQLKDNLILDITDLHVNFKVKDGILHAVRGIDLKVERGSIVGIVGES 60 Query: 61 XXXXXXCVKSIIGFNDGAKTTAKLMNFKNIDISKMKKHQWQYYRGTYVSYISQDPLFSLN 120 VKSIIGFND A+T AKLMNFKN+DI+K+KKHQW+YYRGTYVSYISQDPLFSLN Sbjct: 61 GSGKSVSVKSIIGFNDNAQTKAKLMNFKNVDITKLKKHQWKYYRGTYVSYISQDPLFSLN 120 Query: 121 PTMTIGRQVKEAIYVSCKRRYYQTKSDLKYDLQTERIDLDTYKEKLXXXXXXXXXXXXXX 180 PTMTIG+QVKEAIYV+ KRRY+Q KSDLK+ L + ID TYK KL Sbjct: 121 PTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPI 180 Query: 181 XXXXXXLEILNFIGIDQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALD 240 LEIL FIGI+ A+KRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALD Sbjct: 181 NVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALD 240 Query: 241 VTIQAKALNLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNP 300 VTIQAK L LIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAG++VE+GLVEEIFTNP Sbjct: 241 VTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNP 300 Query: 301 VHPYTWALMASIPEGTDKNAPLTSIPGYIPNMLSPPKGDAFAARNQFALAIDFEHQPPFF 360 +HPYTWAL++SIPE DKN PLTSIPG IPNML+PPKGDAFA+RNQ+ALAIDFE+ PPFF Sbjct: 301 LHPYTWALISSIPEQKDKNKPLTSIPGVIPNMLTPPKGDAFASRNQYALAIDFEYHPPFF 360 Query: 361 DVTETHKAATWLLHPQAPKVEMPADVKEKIAITRKALAIK 400 +VT+THKAATWLLHPQAPKVE P V + I +T+KAL K Sbjct: 361 EVTKTHKAATWLLHPQAPKVEPPQAVIDNITLTKKALQFK 400 >ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length = 848 Score = 133 bits (334), Expect = 3e-033, Method: Compositional matrix adjust. Identities = 59/120 (49%), Positives = 90/120 (75%) Query: 205 FPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNITIIF 264 +P EFSGG RQRI IA A+ T+P LIIADE +ALDV+IQA+ +N++K L N+T++F Sbjct: 681 YPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTVLF 740 Query: 265 ISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYTWALMASIPEGTDKNAPLTS 324 I+H++S++ C+ + +M+ G++VE+G V+EIF+NPVHPYT +L+ + P+ + N L S Sbjct: 741 IAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSNPVHPYTRSLIKASPKLSKINVDLAS 800 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 71.2 bits (173), Expect = 2e-014, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 2/110 (1%) Query: 196 DQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLR 255 D+ + L + SGG +QR+ IA A+A +PD+++ DEPT+ALD LI+QL+ Sbjct: 214 DEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLK 273 Query: 256 DLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYT 305 + TI+ ++H+++ D GR++E+G ++IFT P T Sbjct: 274 E--KFTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQIFTKPKQKAT 321 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 69.7 bits (169), Expect = 5e-014, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 7/140 (5%) Query: 187 LEILNFIGIDQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAK 246 LE+ N + I K L P + SGG +QR+ IA A+ P L++ DEP + LD ++ + Sbjct: 349 LEVANKLAIT---KILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQ 405 Query: 247 ALNLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYTW 306 I+Q + L IT +F++H+ + D + M G++ + G E++ P + + Sbjct: 406 TRQWIRQFQQELQITTVFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPANEFVA 465 Query: 307 ALMAS----IPEGTDKNAPL 322 + + I E + KN L Sbjct: 466 RFLGTPEMNIIECSVKNNQL 485 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 69.3 bits (168), Expect = 6e-014, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 97/203 (47%), Gaps = 22/203 (10%) Query: 188 EILNFIGIDQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKA 247 +++ +G+ E RL P E SGGM+QR+ +A ++ EP++++ DEP +ALD ++ Sbjct: 330 DVIEMVGLKGKEDRL---PDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNL 386 Query: 248 LNLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYTWA 307 ++Q+ +T I ++H+ D + VM G +++ G +I+ +P + Sbjct: 387 QKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIYDSPKTEWIAN 446 Query: 308 LM--ASIPEGT---DKNAPLTSIPGYIPNMLSPPKGDAFAARNQFALAI---DFEHQPP- 358 + A+I +GT +K L S ++ + + Q+ + I DF+ P Sbjct: 447 FIGQANIFKGTYLGEKKIQLQS-----GEIIQTDVDNNYVVGKQYKILIRPEDFDLVPEN 501 Query: 359 --FFDV---TETHKAATWLLHPQ 376 FF+V + +K W + Q Sbjct: 502 KGFFNVRVIDKNYKGLLWKITTQ 524 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 68.2 bits (165), Expect = 2e-013, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 4/99 (4%) Query: 189 ILNFIGIDQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKAL 248 +L +G+D +K+L P+E SGG +QR+ IA A A P LI DEPT ALD+ + L Sbjct: 354 LLEAVGMDSLQKKL---PNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVL 410 Query: 249 NLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGRL 287 ++ T+I ++HN +LIAN D V + G++ Sbjct: 411 KQFLAIKKRYQTTMIIVTHN-NLIANLADLVIYVADGKI 448 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 63.2 bits (152), Expect = 4e-012, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 202 LKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNIT 261 L FP E SGG +QR+ IA A+ EP L++ DEPT ALD +NL++ + T Sbjct: 217 LYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYKQT 276 Query: 262 IIFISHNISLIANFCDFVYVMYAGRLVEKGLV 293 I+ ++H++SL + + + G++V LV Sbjct: 277 ILMVTHDVSL-TRIANRIIKISDGKIVSNQLV 307 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 60.1 bits (144), Expect = 5e-011, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 1/98 (1%) Query: 202 LKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNIT 261 L+ P E SGG ++R+ IA +A EP+++I DEPT LD + + + LIK + T Sbjct: 154 LERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQLIKTAKQQQR-T 212 Query: 262 IIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTN 299 + I+H + + D V V+ G+LV+ E+F + Sbjct: 213 VFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMD 250 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507957|ref|NP_109906.1| but only N- and C-term; inbetween (500AA) seg and coil [Mycoplasma pneumoniae M129] (851 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding prote... 1071 0.0 ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding prote... 129 2e-031 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 90 1e-019 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 88 3e-019 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 83 9e-018 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 74 6e-015 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 71 6e-014 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 70 8e-014 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 68 3e-013 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 60 7e-011 ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasm... 60 8e-011 >ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length = 848 Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/852 (62%), Positives = 651/852 (76%), Gaps = 5/852 (0%) Query: 1 METKKQKQNPLVNVKALSMLFKVRGSFFKALDEIDFTVNEGDFFGVIGEXXXXXXXXXXC 60 ME + K+ PLVNVKALSM+FKVRG+ FKALDEI FTVNEGDFFGVIGE C Sbjct: 1 MENQNTKK-PLVNVKALSMMFKVRGTLFKALDEIGFTVNEGDFFGVIGESGSGKSTTGKC 59 Query: 61 LIRLNIPSGGKVEIANHLISGKKLTRENDHWLKQNVQMVFQDPYSSLNPTKNVLTVISEP 120 LIRLNIPSGGK+EIANHL+SGKKLT+EN+ WLKQN+QMVFQDPYSS+NPTKNVLTVISEP Sbjct: 60 LIRLNIPSGGKIEIANHLLSGKKLTKENNQWLKQNIQMVFQDPYSSINPTKNVLTVISEP 119 Query: 121 LVITKTVYGEVKEYLKTLAKLSFKTKKELLREDFELETQFYEKFFSKVLFHLETTINKFA 180 LVI+KTV+GE K+YLK+L KLSFK KK LLR D ELET+F+ FF V+ + ++ F Sbjct: 120 LVISKTVFGETKQYLKSLQKLSFKVKKTLLRNDIELETKFHNNFFKTVIKQINESLFNFE 179 Query: 181 LLQESNNNSSAELAQTILGHTDDLIEALRQEFGLVYEFSSSQSEPLQKALKDKQETLAQD 240 L + S L Q I+ TD IE +R EF L Y+F ++QS PLQKAL D +L Sbjct: 180 DLDYKDLKPS-HLRQRIINETDKFIEKIRSEFALFYDFYANQSVPLQKALDDANSSLTPS 238 Query: 241 TIDKLKQELYTTQQKAKVSTQAFATWQKLQQTKQNLKAYRAQMAEELQNKPRIYLNAWLL 300 ++ +LK +L Q++AK+S A+ Q L+Q ++ LK Y + ELQ KPRIYLN WLL Sbjct: 239 SVIELKNQLKALQKQAKISKAAWDILQALKQNQKELKDYENYVHFELQKKPRIYLNTWLL 298 Query: 301 TTKNYIKDSRQNTQLTDDVFAFSYNDMVDKKRRLVLVLSEYYKALPYFYDNWIHQNADRF 360 TTK+YIKDS+QN QLTDD+FAFSYN MVDKKR LVL+LS+YYK LPYFYD + NAD+F Sbjct: 299 TTKSYIKDSKQNMQLTDDIFAFSYNSMVDKKRNLVLILSKYYKLLPYFYDQSVFDNADQF 358 Query: 361 DELTNAVFFDLIDVVIALNRDFANVESDAKAELIRFVQFIRRLCDLRFAALKKSFKK-QT 419 DE+ N +FFDL++ ++ + F + + K LI+F +F+ +LCDLRF LKKSFKK + Sbjct: 359 DEIANLIFFDLVETLLGVTSLFNDALAADKVPLIKFAKFLNKLCDLRFLTLKKSFKKTRV 418 Query: 420 NYSFDFNRETELLYANSCYDIKELPQVIQPYWEKLFSDANYDKIAKSVQELNDIISTDIE 479 + SF FN E E+L+ANSCYD++++PQ+I+P+WEKLF++ NY KI SV LN +I+ I Sbjct: 419 SCSFSFNSEPEILFANSCYDLQQMPQIIKPFWEKLFNEQNYQKIIDSVSRLNVMIANYIT 478 Query: 480 KASNIASEINTKISSFKTEIAELKATFKTEKKAEDHSAQITGLKTQIAEIQTQIKQQKRE 539 KA I I+ K+ FK + LK + KK+E + A I LK + ++ Q+KQ+K Sbjct: 479 KAFEIKKTIDEKLREFKQQNLALKKAYSANKKSEANKASINELKVNLKTLKKQLKQEKNT 538 Query: 540 VQSTEKAALKPVLKQYKSALHLYKRFKQLLRQFTKQLNLLVKKQQELEKIEEGLDLTIWE 599 + K LKP+LK++ +AL L+ F LR++ K+LN +VKK LE ++ L + Sbjct: 539 TKKQSKKELKPLLKEHHTALKLHDEFNHDLRKWFKKLNFMVKKYNRLENSQKKFCLV--K 596 Query: 600 RIQLLFYPVEGDLKSELKTRLKSFGVINFEYKRAVRESRVFRLVHFGHDVMKWGLFLPLT 659 +++ LF + L+SEL+ +LK+FGVINFEYKRAV+ES VFRLVHF ++ K LF LT Sbjct: 597 KLKALFKKQDETLQSELRPKLKTFGVINFEYKRAVKESNVFRLVHFAKNIFKPFLFFNLT 656 Query: 660 KIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALD 719 KIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALD Sbjct: 657 KIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALD 716 Query: 720 VSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAHP 779 VSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGS DEIF++P Sbjct: 717 VSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSNP 776 Query: 780 VHPYTRSLIKASPKLSKINIDLASFDEKFTYDSDYSLTNMPSFLKVPNTQEHELYCTQGQ 839 VHPYTRSLIKASPKLSKIN+DLASFDE FTYDSDYSLTNMP ++KVPN++EHELYCTQ Q Sbjct: 777 VHPYTRSLIKASPKLSKINVDLASFDENFTYDSDYSLTNMPFYIKVPNSEEHELYCTQKQ 836 Query: 840 FDSWIKGASRIN 851 FDSWIK A+ IN Sbjct: 837 FDSWIKEATPIN 848 >ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length = 402 Score = 129 bits (323), Expect = 2e-031, Method: Compositional matrix adjust. Identities = 64/146 (43%), Positives = 97/146 (66%), Gaps = 2/146 (1%) Query: 661 IFMRNKVYEALDSVGLK--REHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISAL 718 I + K E L +G+ ++ +P EFSGG RQRI IA A+ T+P LIIADE +AL Sbjct: 180 INVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTAL 239 Query: 719 DVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAH 778 DV+IQA+V+ ++K L N+T++FI+H++S++ C+ + +M+ GKIVE+G +EIF + Sbjct: 240 DVTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTN 299 Query: 779 PVHPYTRSLIKASPKLSKINIDLASF 804 P+HPYT +LI + P+ N L S Sbjct: 300 PLHPYTWALISSIPEQKDKNKPLTSI 325 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 89.7 bits (221), Expect = 1e-019, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 78/131 (59%), Gaps = 1/131 (0%) Query: 658 LTKIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISA 717 LTK KV + ++ VGLK + R P E SGG +QR+A+AR+L+ +P++++ DE +SA Sbjct: 319 LTKAEQNKKVSDVIEMVGLKGKED-RLPDELSGGMKQRVALARSLVVEPEILLLDEPLSA 377 Query: 718 LDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFA 777 LD ++ + L+ + KK LT + + HD + +R+++M+ G I++ G+ +I+ Sbjct: 378 LDAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIYD 437 Query: 778 HPVHPYTRSLI 788 P + + I Sbjct: 438 SPKTEWIANFI 448 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 87.8 bits (216), Expect = 3e-019, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 64/90 (71%), Gaps = 1/90 (1%) Query: 678 REHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKH 737 +E Y++P+E SGGQ+QR+AIARA+I +PKL++ DE ALD + +IN+L+ + K + Sbjct: 214 KEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTY 273 Query: 738 NLTVLFIAHDLSMVQTVCNRLIIMHRGKIV 767 T+L + HD+S+ + + NR+I + GKIV Sbjct: 274 KQTILMVTHDVSLTR-IANRIIKISDGKIV 302 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 83.2 bits (204), Expect = 9e-018, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 35/356 (9%) Query: 464 AKSVQE---LNDIISTDIEKASNIASEIN-TKISSFKTEIAELKATFKTEKKAEDHSAQI 519 SVQE LN + IEK I +IN +S FK + EL A K H I Sbjct: 134 GASVQEIDQLNKLFHDSIEKPKQIQYQINDLNVSVFKN-LNELTANLKL--IPSKHQFAI 190 Query: 520 TGLKTQI--------AEIQTQIKQQKREV--QSTEKAALKPVLKQYKS------ALHLYK 563 T L Q AE +T+ K QK+ E A +KQ+ S H +K Sbjct: 191 TNLNKQTLKQINELEAEFKTKWKLQKQTPIKSGVEHNAKLQAIKQHFSYEKQRLKKHYFK 250 Query: 564 RFKQLLRQFTKQLNLLVKKQQELEK-IEEGLDLTIWERIQLLFYPVEGDLKSELKTRLKS 622 +L + + L L+ K E K I++ D T ++++ L LK + K L Sbjct: 251 TKVELKQTLVENLKLVKKAISEQTKLIKQSSDYTKLKQLKRLIKVEPNQLKKQYKVFLNQ 310 Query: 623 FGVINFEYKR-AVRESRVFRLVHFGHDVMKWGLFLPLTKIFMRNKVYEALDSVGLKREHA 681 + N+ K + ++++ + ++ F+ T + + NK+ A+ + KR Sbjct: 311 L-IKNYSLKTDKLTDTQLNEIEQIKTRIVSIKQFINKTALEVANKL--AITKILTKR--- 364 Query: 682 YRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTV 741 P + SGGQ+QR+AIARA++ +PKL++ DE +S LD ++ Q ++ ++ +T Sbjct: 365 ---PDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQITT 421 Query: 742 LFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAHPVHPYTRSLIKASPKLSKI 797 +F+ HD ++ + ++ M GK+ + G+ E++ P + + + +P+++ I Sbjct: 422 VFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPANEFVARFL-GTPEMNII 476 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 73.9 bits (180), Expect = 6e-015, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 648 DVMKWGLFLPLTKIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPK 707 D+M + L +K R K L+ +GLK R P E SGGQ++R+AIA L +P+ Sbjct: 121 DIMFGPVALGQSKYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPE 180 Query: 708 LIIADELISALDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIV 767 ++I DE + LD + +++ ++K AK+ TV I H + V V + ++++ +GK+V Sbjct: 181 ILIFDEPTAGLDPEGEREMMQLIKT-AKQQQRTVFMITHQMENVLEVADVVLVLAKGKLV 239 Query: 768 ERGSTDEIF 776 + S E+F Sbjct: 240 KAASPYEVF 248 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 70.9 bits (172), Expect = 6e-014, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 5/127 (3%) Query: 667 VYEALDSVGL---KREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQ 723 V +AL S L +++ +R + SGGQ+QR+ IARA+ +P +++ DE SALD SI Sbjct: 203 VRQALISAALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALD-SIA 261 Query: 724 AQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAHPVHPY 783 I +L K+ T++ + H ++ + + I G+++E+G+T +IF P Sbjct: 262 TNSIELLIQQLKEK-FTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQIFTKPKQKA 320 Query: 784 TRSLIKA 790 T S I Sbjct: 321 TNSYISG 327 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 70.1 bits (170), Expect = 8e-014, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 5/120 (4%) Query: 660 KIFMRNKVYEALDSVGLKRE---HAYRYPHEFSGGQRQRIAIARALITKPKLIIADELIS 716 K F R K+ +D V L+ + + PH SGGQ+QR+AIA L P +II DE + Sbjct: 111 KCFSRQKIKAIIDEVTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTA 170 Query: 717 ALDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIF 776 LD + + + LAK+ V+ I HD+ V T +++++M+ GK++++G E+F Sbjct: 171 MLDPKAKKTIKQFMVKLAKQGK-CVISITHDMEEV-TKADKVLVMNEGKLIKQGKPVEVF 228 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 68.2 bits (165), Expect = 3e-013, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 56/88 (63%), Gaps = 1/88 (1%) Query: 680 HAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNL 739 H ++ H+ SGGQ+QR+AIARALI +PK++ DE A+++ I +++ + + Sbjct: 181 HRHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGT 240 Query: 740 TVLFIAHDLSMVQTVCNRLIIMHRGKIV 767 T++ + H+ +V+ + R+I +H GKI+ Sbjct: 241 TIVIVTHNEKIVE-LAKRVIKIHDGKII 267 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 60.5 bits (145), Expect = 7e-011, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 2/96 (2%) Query: 671 LDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINIL 730 L++VG+ + P+E SGGQ+QR++IARA P LI DE ALD+ + V+ Sbjct: 355 LEAVGMDSLQK-KLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQF 413 Query: 731 KDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKI 766 + K++ T++ + H+ +++ + + +I + GKI Sbjct: 414 LAIKKRYQTTMIIVTHN-NLIANLADLVIYVADGKI 448 >ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 357 Score = 60.1 bits (144), Expect = 8e-011, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 4/109 (3%) Query: 671 LDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINIL 730 LD GL+ + P E S GQ++R+A+A L + K +I DE LD Q + N+ Sbjct: 197 LDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFLILDEPTVGLD---QMAISNLS 253 Query: 731 KDL-AKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAH 778 K L A K ++ ++HD+ + +++I +H+GKI+ + + ++ F++ Sbjct: 254 KMLVAMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQTTVNDFFSN 302 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507958|ref|NP_109907.1| ribosomal protein L11 [Mycoplasma pneumoniae M129] (137 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072743.1| ribosomal protein L11 (rpl11) [Mycoplasma genit... 247 3e-068 >ref|NP_072743.1| ribosomal protein L11 (rpl11) [Mycoplasma genitalium G-37] Length = 137 Score = 247 bits (631), Expect = 3e-068, Method: Compositional matrix adjust. Identities = 121/137 (88%), Positives = 132/137 (96%) Query: 1 MAKKTITRIAKINLLGGQAKPGPALASVGINMGEFTKQFNEKTKDKQGEMIPCVITAYND 60 MAKKT+TRIAKINL+GGQAKPGPALASVGINMGEFTKQFNEKTKD+QGE IPC+ITA+ND Sbjct: 1 MAKKTVTRIAKINLIGGQAKPGPALASVGINMGEFTKQFNEKTKDRQGETIPCIITAFND 60 Query: 61 KSFDFILKTTPVSILLKQAAKLEKGAKNAKTIVGKITMAKAKEIAQYKLVDLNANTVEAA 120 KSF F+LKTTPVS L+KQAAKLEKGAKNAKTIVGKI++ +AKEIAQYKLVDLNANTVEAA Sbjct: 61 KSFTFVLKTTPVSNLIKQAAKLEKGAKNAKTIVGKISLQQAKEIAQYKLVDLNANTVEAA 120 Query: 121 LKMVLGTAKQMGIEVIE 137 LKMVLGTAKQMGIEV + Sbjct: 121 LKMVLGTAKQMGIEVTD 137 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507959|ref|NP_109908.1| ribosomal protein L1 [Mycoplasma pneumoniae M129] (226 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072744.1| ribosomal protein L1 (rpL1) [Mycoplasma genital... 345 2e-097 >ref|NP_072744.1| ribosomal protein L1 (rpL1) [Mycoplasma genitalium G-37] Length = 226 Score = 345 bits (885), Expect = 2e-097, Method: Compositional matrix adjust. Identities = 169/226 (74%), Positives = 190/226 (84%) Query: 1 MAKLSKKMKIAVGLVDKTKLYPLQEAVDLVKKTSITKFNGSVDIAVSLNLDTTKAEQQLR 60 M KLSK+M+ L+DK KLYP+QEA +L+KKT+ITKF SVDIAVSLNLDTTKAEQQLR Sbjct: 1 MKKLSKRMQAVTKLIDKNKLYPIQEAFELIKKTAITKFVSSVDIAVSLNLDTTKAEQQLR 60 Query: 61 GAIAFPHSVGKPIRILAITDDEKAALEAGADFVGGIDKINDIKNGWLDFDLIITSPKFMA 120 GAIAFP S+GK IRILAITDDEK A EAGADFVGG+DKI IKNGWLDFDLIITSPKFM Sbjct: 61 GAIAFPFSIGKSIRILAITDDEKKASEAGADFVGGLDKIEAIKNGWLDFDLIITSPKFMG 120 Query: 121 AXXXXXXXXXXXXXMPNPKTETVTDDVPAAVRAYKKGKKEYRADSFGNIHMSLGRVDSAS 180 A MPNPKTETVTDDV +A++AYKKGKKEYR DSFGNIH+SLG+ D+ + Sbjct: 121 ALGKLGKLLGTRGLMPNPKTETVTDDVVSAIKAYKKGKKEYRTDSFGNIHLSLGKTDTKT 180 Query: 181 NHLVENALALLDLIKSRKPATVKGIYIKNIALTTTMGPSLKVKLPD 226 HLV NA+AL+DLIKS++P+TVKG YIKNIALTTTMGPSLKVKLPD Sbjct: 181 EHLVANAMALIDLIKSKRPSTVKGTYIKNIALTTTMGPSLKVKLPD 226 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507960|ref|NP_109909.1| peptidyl-tRNA hydrolase [Mycoplasma pneumoniae M129] (188 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072745.1| peptidyl-tRNA hydrolase (pth) [Mycoplasma genit... 233 1e-063 >ref|NP_072745.1| peptidyl-tRNA hydrolase (pth) [Mycoplasma genitalium G-37] Length = 189 Score = 233 bits (594), Expect = 1e-063, Method: Compositional matrix adjust. Identities = 110/187 (58%), Positives = 145/187 (77%) Query: 1 MDKLRLVVGLGNLGKQYAETRHNAGFKVIDRLLSLYHVQLEERNNLGEFILLRKHKVVLA 60 M +L+VGLGNLGK+Y +TRHNAGF V+DRL SL+H+ ++ N LG+++ +++ +LA Sbjct: 1 MPTYKLIVGLGNLGKKYEKTRHNAGFMVLDRLASLFHLNFDKTNKLGDYLFIKEKAAILA 60 Query: 61 KPNTYMNHSGKFVKWACQNWNIKPDKVMVVYDELAFPLGTVRLKMQGSANNHNGIKSVIA 120 KP T+MN+SG FVKW ++ I +M+V+DE+AF LG +RLKMQGSANNHNGIKSVI Sbjct: 61 KPATFMNNSGLFVKWLQDHFQIPLANIMIVHDEIAFDLGVIRLKMQGSANNHNGIKSVIR 120 Query: 121 HLNTEHFNRLRFGIKSDNTSNILHEVVMSEFTPAERNLLETALTKAIEALKGYIDGVTML 180 HL+TE FNRLRFGIKS NTSNILHE VMSEF +E LE A+TK++E LK YI+G + Sbjct: 121 HLDTEQFNRLRFGIKSQNTSNILHEQVMSEFQNSELTKLEVAITKSVELLKRYIEGEELQ 180 Query: 181 KLMEVFN 187 +LME ++ Sbjct: 181 RLMEYYH 187 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507961|ref|NP_109910.1| similar to PP-loop superfamily ATPase/cell cycle protein MESJ homologues [Mycoplasma pneumoniae M129] (289 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072746.1| hypothetical protein MG084 [Mycoplasma genitali... 445 e-127 >ref|NP_072746.1| hypothetical protein MG084 [Mycoplasma genitalium G-37] Length = 290 Score = 445 bits (1144), Expect = e-127, Method: Compositional matrix adjust. Identities = 205/285 (71%), Positives = 246/285 (86%) Query: 5 QYIAGVSGGPDSMLLLKLYHKKIACVVHVNYNKRTTALRDQKMVEEYCKQLKVPLIVHTV 64 QYIAGVSGG DSML+LKLY KKIACVVHVNYN R+T+LRDQK+VE+YC++L +PL+VHTV Sbjct: 6 QYIAGVSGGSDSMLMLKLYQKKIACVVHVNYNTRSTSLRDQKLVEQYCQKLNIPLVVHTV 65 Query: 65 PEDTVWKKNFQAQARKIRFEQFQKAASLYKVDKLLLAHHRDDFIEQAKMQLDARKRAMYY 124 D VWKKNFQ QARKIRF+QF+K A LY+ +KLLLAHHRDDFIEQAKMQLDA+KRA+YY Sbjct: 66 DPDLVWKKNFQNQARKIRFDQFKKTAKLYQTNKLLLAHHRDDFIEQAKMQLDAKKRAVYY 125 Query: 125 GIKTRGELYGMKVYRPFIKYWKNEILALCEEHKVPYGIDETNAQPIYKRNQVRQEIANWS 184 GIKTR ELYG+K+YRP +KYWK+EI+ALC + +PY IDETN PIYKRN+VR EI WS Sbjct: 126 GIKTRCELYGLKIYRPLMKYWKDEIIALCRQDHIPYEIDETNKLPIYKRNEVRLEIEKWS 185 Query: 185 KEEKEEFYIGVCAMNRVIGQKLFSLMKRAKQWLAHPDVRELKRYPLPDQRQLVYSFLITH 244 K EKE+FYI +CAMN+ I QKLF LMK+AK+WL PDVRELKR+ + DQ+QL+YS+LI H Sbjct: 186 KIEKEQFYIAICAMNKTIAQKLFVLMKKAKKWLLQPDVRELKRFSIIDQKQLIYSYLIYH 245 Query: 245 HIDVTGDKIDAILDFIQPFQQKHYRLKDEIFLSIKDERLTLLYKS 289 I+V G+KIDAILDFIQP QQK YRL+++IFL +K++ L LLYKS Sbjct: 246 KINVNGEKIDAILDFIQPSQQKQYRLQNDIFLMVKNQCLALLYKS 290 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507962|ref|NP_109911.1| HPr(Ser) kinase [Mycoplasma pneumoniae M129] (312 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072747.1| hpr(ser) kinase, putative [Mycoplasma genitaliu... 428 e-122 >ref|NP_072747.1| hpr(ser) kinase, putative [Mycoplasma genitalium G-37] Length = 311 Score = 428 bits (1101), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/311 (69%), Positives = 251/311 (80%) Query: 1 MKKLLVKELIEQFQDCVNLIDGHTNTSNVIRVPGLKRVVFEMLGLFSSQIGSVAILGKRE 60 MK L VK L+ QF DC+ LIDG N NVI +PGLKR VFE+LGLF IGSVAILGKRE Sbjct: 1 MKHLTVKALVLQFNDCIQLIDGKNNIDNVITIPGLKRSVFELLGLFCKPIGSVAILGKRE 60 Query: 61 FGFLSQKTLVEQQQILHNLLKLNPPAIILTKSFTDPTVLLQVNQTYQVPILKTDFFSTEL 120 F FL+QK + +Q++I+ NLLKL PPA+ILTKSF D VLL VNQTYQVPILKT+ FSTEL Sbjct: 61 FIFLNQKPVEQQKKIIANLLKLKPPAVILTKSFLDCGVLLAVNQTYQVPILKTNLFSTEL 120 Query: 121 SFTVETYINEQFATVAQIHXXXXXXXXXXXXXXXRSGIGKSECALDLINKNHLFVGDDAI 180 SFTVETYINEQFATV ++H +SGIGKSE ALDLINKNHL +GDDAI Sbjct: 121 SFTVETYINEQFATVQKLHGVLLEIFGVGVFLEGKSGIGKSESALDLINKNHLLIGDDAI 180 Query: 181 EIYRLGNRLFGRAQEVAKKFMEIRGLGIINVERFYGLQITKQRTEIQLMVNLLSLEKQTT 240 EIYRLGNRLFGRAQ +AK FMEIRGLGIIN+ER YGLQITK++TEIQL ++LLSLE++ Sbjct: 181 EIYRLGNRLFGRAQALAKGFMEIRGLGIINIERAYGLQITKEQTEIQLAISLLSLEEKNN 240 Query: 241 VTFERLGTELKKQRLLGVDLSFYEIPISPGRKTSEIIESAVIDFKLKHSGYNSALDFIEN 300 +FERLG++LK + LLGV +S+Y+IPIS GRKTSEIIESAVIDFKLK SGYNSA +FI Sbjct: 241 ASFERLGSDLKLKNLLGVKISYYQIPISSGRKTSEIIESAVIDFKLKKSGYNSANEFILK 300 Query: 301 QKAILKRKKDE 311 Q+A+L+ + DE Sbjct: 301 QRAMLEEQTDE 311 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507963|ref|NP_109912.1| prolipoprotein diacylglyceryl transferase but unknown TM contating C-term; bidomainal [Mycoplasma pneumoniae M129] (389 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072748.1| prolipoprotein diacylglyceryl transferase (lgt)... 459 e-131 >ref|NP_072748.1| prolipoprotein diacylglyceryl transferase (lgt) [Mycoplasma genitalium G-37] Length = 382 Score = 459 bits (1180), Expect = e-131, Method: Compositional matrix adjust. Identities = 242/383 (63%), Positives = 274/383 (71%), Gaps = 2/383 (0%) Query: 7 SRPPWSTAFYLGPGFPIQWYXXXXXXXXXXXXLMFVLKLIYFYKIQDNSFYFFIFIAVLT 66 +RP WSTAF +G GFPIQWY LMFV KLIY YK+QDNSFYFFIFIAVLT Sbjct: 2 NRPSWSTAFNIGGGFPIQWYGIIVSIGIIFAILMFVFKLIYCYKLQDNSFYFFIFIAVLT 61 Query: 67 MVLGARAWYFLIEAVDGRSSGSNFFDFRNGGLAIQGGVLLTTLAGIIYFNVFXXXXXXXX 126 MVLGAR W F+I D + +NFFDFRNGGLAIQGG+LLT++ G+IYFN F Sbjct: 62 MVLGARLWSFVIG--DSNFANNNFFDFRNGGLAIQGGILLTSIVGVIYFNFFLNSKTNKT 119 Query: 127 XXXXXXXXXXXQIKTVYVERNISVFVMLDLIAPCVLIGQAIGRWGNFFNAEVYGAALVGS 186 +IK VYVERNISV VMLDLIAPCVLIGQAIGRWGNFFN EVYG AL G+ Sbjct: 120 KTIAELLNNKNEIKAVYVERNISVLVMLDLIAPCVLIGQAIGRWGNFFNQEVYGFALAGT 179 Query: 187 KNDTLSAANTTWGFLRILMPKVWDGMFINGSFRIPLFLIESXXXXXXXXXXXXXMDHIKG 246 ND + ANT WGFL+ILMPKVWDGM+I+G FRIPLFLIES MD I+G Sbjct: 180 MNDPQALANTQWGFLKILMPKVWDGMWIDGQFRIPLFLIESFFNTIFFVLIYFVMDFIRG 239 Query: 247 IRSGTIGFSYFLATGIVRLILETQRDEAFKYNTSIVFSAXXXXXXXXXXXYCQTLAIKLR 306 ++SGTIGFSYFLATGI+RLILE RD+ F + TSI S YCQ + +KLR Sbjct: 240 VKSGTIGFSYFLATGIIRLILENFRDQTFYFQTSITTSILFIVVGILGIFYCQFIHVKLR 299 Query: 307 GYFWTYFFLYGWYKVAAFFTTLFMKDRTQACSSKFAFYEKSLPEKERSFFQLKYYNDVLP 366 YFWTYFFLY +YKVAAFFTTLF+ +R Q KFAFYEKSLP K+RSFF++KYYNDV Sbjct: 300 NYFWTYFFLYAFYKVAAFFTTLFLNNRKQMAQQKFAFYEKSLPNKKRSFFEMKYYNDVTT 359 Query: 367 PKIYRLYDHEMLMFDKLEAVPEA 389 PKIYRL D EM +FDKLEAV + Sbjct: 360 PKIYRLTDQEMKLFDKLEAVTTS 382 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507964|ref|NP_109913.1| ribosomal protein S12 [Mycoplasma pneumoniae M129] (139 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072749.1| ribosomal protein S12 (rpS12) [Mycoplasma genit... 227 3e-062 >ref|NP_072749.1| ribosomal protein S12 (rpS12) [Mycoplasma genitalium G-37] Length = 139 Score = 227 bits (579), Expect = 3e-062, Method: Compositional matrix adjust. Identities = 114/139 (82%), Positives = 116/139 (83%) Query: 1 MATIAQLIXXXXXXXXXXXXXXALHYXXXXXXKKVTNVYSPLKRGVCTRVGTMTPKKPNS 60 MATIAQLI ALHY KK TNVYSPLKRGVCTRVGTMTP+KPNS Sbjct: 1 MATIAQLIRKPRQKKKVKSKSPALHYNLNLLNKKTTNVYSPLKRGVCTRVGTMTPRKPNS 60 Query: 61 ALRKYAKVRLTNGFEVLTYIPGEGHNLQEHSVTLLRGGRVKDLPGVRYHIVRGTLDTVGV 120 ALRKYAKVRLTNGFEVL YIPGEGHNLQEHSVTLLRGGRVKDLPGVRYHIVRGTLDTVGV Sbjct: 61 ALRKYAKVRLTNGFEVLAYIPGEGHNLQEHSVTLLRGGRVKDLPGVRYHIVRGTLDTVGV 120 Query: 121 EKRRQQRSAYGAKKPKAKS 139 +KRRQQRSAYGAKKPK KS Sbjct: 121 DKRRQQRSAYGAKKPKPKS 139 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507965|ref|NP_109914.1| ribosomal protein S7 [Mycoplasma pneumoniae M129] (155 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072750.1| ribosomal protein S7 (rpS7) [Mycoplasma genital... 278 1e-077 >ref|NP_072750.1| ribosomal protein S7 (rpS7) [Mycoplasma genitalium G-37] Length = 155 Score = 278 bits (712), Expect = 1e-077, Method: Compositional matrix adjust. Identities = 133/155 (85%), Positives = 148/155 (95%) Query: 1 MRKNRAPKRTVLPDPVFNNTLVTRIINVIMEDGKKGLAQRILYGAFDLIEQRTKEKPLTV 60 MRKNRA KRTVLPDPVFNNTLVTRIINVIM+DGKKGLAQRILYGAF++IE+RT ++PLTV Sbjct: 1 MRKNRALKRTVLPDPVFNNTLVTRIINVIMKDGKKGLAQRILYGAFEIIEKRTNQQPLTV 60 Query: 61 FERAVGNVMPRLELRVRRIAGSNYQVPTEVPQDRKIALALRWIAMFARKRHEKTMLEKIA 120 FE+AV NVMPRLEL+VRRIAGSNYQVPTEVP DR+IALALRWI +FA KR+EKTMLE++A Sbjct: 61 FEKAVDNVMPRLELKVRRIAGSNYQVPTEVPPDRRIALALRWIVIFANKRNEKTMLERVA 120 Query: 121 NEIIDASNNTGAAIKKKDDTHKMAEANKAFAHMRW 155 NEIIDA NNTGA++KKKDDTHKMAEANKAFAHMRW Sbjct: 121 NEIIDAFNNTGASVKKKDDTHKMAEANKAFAHMRW 155 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507966|ref|NP_109915.1| elongation factor G [Mycoplasma pneumoniae M129] (688 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072751.1| elongation factor G (fus) [Mycoplasma genitaliu... 1261 0.0 ref|NP_072800.1| GTP-binding membrane protein (lepA) [Mycoplasma... 108 3e-025 ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplasma genitali... 66 1e-012 ref|NP_072804.1| translation initiation factor 2 (infB) [Mycopla... 63 7e-012 >ref|NP_072751.1| elongation factor G (fus) [Mycoplasma genitalium G-37] Length = 688 Score = 1261 bits (3262), Expect = 0.0, Method: Compositional matrix adjust. Identities = 611/688 (88%), Positives = 639/688 (92%) Query: 1 MARTVDLINFRNFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERG 60 M+RTVDL NFRNFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERG Sbjct: 1 MSRTVDLKNFRNFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERG 60 Query: 61 ITITSAATSVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVW 120 ITITSAATSVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVW Sbjct: 61 ITITSAATSVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVW 120 Query: 121 RQASRYEVPRIIFVNKMDKTGANFERSVQSIQQRLGVKAVPIQLPIGAENDFNGIIDLIE 180 RQASRYEVPR+IFVNKMDKTGANFERSV SIQQRLGVKAVPIQ PIGAENDFNGIID+I Sbjct: 121 RQASRYEVPRVIFVNKMDKTGANFERSVLSIQQRLGVKAVPIQFPIGAENDFNGIIDIIT 180 Query: 181 EKVYFFDGGKEEKAEEKPIPDQFKDQVKQMRAHLVEEVANFDDQLMADYLEGKEISIADI 240 +K YFFDG KEE A EKPIP+Q+ DQV+++ +LVEEVA+ DDQLMADYL+GK I I I Sbjct: 181 KKAYFFDGNKEENAIEKPIPEQYVDQVEKLYNNLVEEVASLDDQLMADYLDGKPIEIDAI 240 Query: 241 KRCIRKGVIGCQFFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVPQAKAYGEDGNEVLIS 300 K IR GVI C+FFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVP AKA + E+ I Sbjct: 241 KNAIRNGVIHCKFFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVPPAKAIDANNKEISIK 300 Query: 301 ASDDAPFVGLAFKVATDPFVGRLTFVRVYSGVLKSGSYXXXXXXXXXXXXSRLVKMHAQN 360 ASDDA F+GLAFKVATDPFVGRLTF+RVY+GVLKSGSY SRLVKMHAQN Sbjct: 301 ASDDANFIGLAFKVATDPFVGRLTFIRVYAGVLKSGSYVKNVRKNKKERVSRLVKMHAQN 360 Query: 361 RNEIEEIRAGDICAIIGLKDTTTGETLVDDKIDVQLEAMQFAQPVISLAVEPKTKADQEK 420 RNEI+EIRAGDICA+IGLKDTTTGETL DDK+DVQLEAMQFA+PVISLAVEPKTKADQEK Sbjct: 361 RNEIDEIRAGDICAVIGLKDTTTGETLTDDKLDVQLEAMQFAEPVISLAVEPKTKADQEK 420 Query: 421 MSIALSKLAEEDPTFKTFTDPETGQTIIAGMGELHLDILVDRMRREFKVEVNVGAPQVSF 480 MSIALSKLAEEDPTFKTF+DPETGQTIIAGMGELHLDILVDRM+REFKVEVN+GAPQVSF Sbjct: 421 MSIALSKLAEEDPTFKTFSDPETGQTIIAGMGELHLDILVDRMKREFKVEVNIGAPQVSF 480 Query: 481 RETFNKESEVEGKYIKQSGGRGQYGHVKIRFEPNKDKGFEFVDKIVGGRIPREYIKPVQA 540 RETF SEVEGKYIKQSGGRGQYGHVKIRFEPNKDKGFEFVDKIVGGRIPREYIKPVQ Sbjct: 481 RETFKSTSEVEGKYIKQSGGRGQYGHVKIRFEPNKDKGFEFVDKIVGGRIPREYIKPVQT 540 Query: 541 GLENAMASGPLAGYPMIDIKATLFDGSFHEVDSSEMAFKIAASLALKEAGKVCSPVLLEP 600 GLENAM SGPLAGYPMIDIKATLFDGSFHEVDSSEMAFKIAASLALKEAGK C+PVLLEP Sbjct: 541 GLENAMNSGPLAGYPMIDIKATLFDGSFHEVDSSEMAFKIAASLALKEAGKQCNPVLLEP 600 Query: 601 IMAIEVTVPEQYFGDTMGDISSRRGLIEGTEQRDNVQVIKAKVPLKEMFGYATDLRSFSQ 660 IMAIEVTVPEQYFGDTMGDISSRRG+IEGTEQRDNVQ+IKAKVPLKEMFGYATDLRSFSQ Sbjct: 601 IMAIEVTVPEQYFGDTMGDISSRRGIIEGTEQRDNVQLIKAKVPLKEMFGYATDLRSFSQ 660 Query: 661 GRGNYVMQFSHYAETPKSVVNEIIATKK 688 GRGNYVMQFSHYAETPKSVVNEIIA KK Sbjct: 661 GRGNYVMQFSHYAETPKSVVNEIIANKK 688 >ref|NP_072800.1| GTP-binding membrane protein (lepA) [Mycoplasma genitalium G-37] Length = 598 Score = 108 bits (269), Expect = 3e-025, Method: Compositional matrix adjust. Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 9/161 (5%) Query: 9 NFRNFGIMAHIDAGKTTTSERILFHS-GRIHKIGETHDGESVMDWMEQEKERGITITSAA 67 N RNF I+AHID GK+T S+R+L HS G ++ + ++D ME E+ERGITI A Sbjct: 5 NIRNFSIIAHIDHGKSTLSDRLLEHSLGFEKRLLQAQ----MLDTMEIERERGITIKLNA 60 Query: 68 T----SVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQA 123 +V N +LIDTPGHVDFT EV RSL +G + ++DA G++ QT + A Sbjct: 61 VELKINVDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNAYLA 120 Query: 124 SRYEVPRIIFVNKMDKTGANFERSVQSIQQRLGVKAVPIQL 164 + I +NK+D A+ E + S+ LGV+ I L Sbjct: 121 LENNLEIIPVINKIDMDNADIETTKDSLHNLLGVEKNSICL 161 Score = 62.0 bits (149), Expect = 2e-011, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 34/256 (13%) Query: 247 GVIGCQFFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVPQAKAYGEDGNEVLISASDDAP 306 ++G + + SA N GI L+ ++ +P P + P Sbjct: 150 NLLGVEKNSICLVSAKANLGIDQLIQTIIAKIPPP------------------KGEINRP 191 Query: 307 FVGLAFKVATDPFVGRLTFVRVYSGVLKSGSYXXXXXXXXXXXXSRL-VKMHAQNRNEIE 365 L F DP+ G + F+RV+ G LK L VK + + Sbjct: 192 LKALLFDSYYDPYKGVVCFIRVFDGCLKVNDKVRFIKSNSVYQIVELGVKTPFFEKRD-- 249 Query: 366 EIRAGDI----CAIIGLKDTTTGETLV--DDKIDVQLEAMQFAQPVISLAVEPKTKADQE 419 +++AGD+ I L+D G+T+V DD+ L + P+I + P +D + Sbjct: 250 QLQAGDVGWFSAGIKKLRDVGVGDTIVSFDDQFTKPLAGYKKILPMIYCGLYPVDNSDYQ 309 Query: 420 KMSIALSKLAEEDPTFKTFTDPETGQTIIAG-----MGELHLDILVDRMRREFKVEVNVG 474 + +A+ K+ D + + ET Q + G +G LH+D++ +R+ RE+ +++ Sbjct: 310 NLKLAMEKIIISDAALEY--EYETSQALGFGVRCGFLGLLHMDVIKERLEREYNLKLISA 367 Query: 475 APQVSFRETFNKESEV 490 P V ++ E+ Sbjct: 368 PPSVVYKVLLTNGKEI 383 >ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplasma genitalium G-37] Length = 394 Score = 65.9 bits (159), Expect = 1e-012, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Query: 12 NFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERGITITSAATSVS 71 N G + HID GKTT + I + K T E +D +EK RGITI SA S Sbjct: 14 NVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDE--IDKAPEEKARGITINSAHVEYS 71 Query: 72 WKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQASRYEVPR- 130 +D PGH D+ + +DGAI V+ A V PQT A + VP+ Sbjct: 72 SDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHILLARQVGVPKM 131 Query: 131 IIFVNKMD 138 ++F+NK D Sbjct: 132 VVFLNKCD 139 >ref|NP_072804.1| translation initiation factor 2 (infB) [Mycoplasma genitalium G-37] Length = 619 Score = 63.2 bits (152), Expect = 7e-012, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 19/140 (13%) Query: 15 IMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERGITITSAATSV-SWK 73 IM H+D GKT+ + I + + G GIT A V + + Sbjct: 127 IMGHVDHGKTSLLDTIRKTNVTAKEFG------------------GITQKIGAYQVKNHQ 168 Query: 74 NCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQASRYEVPRIIF 133 N ++ IDTPGH FT+ R +V D + V+ A G++ QTE A P I+F Sbjct: 169 NKTITFIDTPGHEAFTLMRARGAKVTDIVVLVVAADDGIKKQTEEAISHAKSANTPIIVF 228 Query: 134 VNKMDKTGANFERSVQSIQQ 153 +NKMDK AN + +Q + + Sbjct: 229 INKMDKPTANPDLVIQQLNK 248 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507967|ref|NP_109916.1| ribosomal protein S6 but seg N-term [Mycoplasma pneumoniae M129] (215 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072752.1| ribosomal protein S6 (rpS6) [Mycoplasma genital... 250 7e-069 >ref|NP_072752.1| ribosomal protein S6 (rpS6) [Mycoplasma genitalium G-37] Length = 208 Score = 250 bits (639), Expect = 7e-069, Method: Compositional matrix adjust. Identities = 118/181 (65%), Positives = 139/181 (76%) Query: 1 MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIKKQLSAHYYRW 60 M YNIILLVDG+LSLEQANQV +K Q+ L ++EYLGLKELAYPIKKQLSAHYYRW Sbjct: 1 MHYNIILLVDGTLSLEQANQVEQKHQKLLEKATEFKSEYLGLKELAYPIKKQLSAHYYRW 60 Query: 61 KFSGDNQSTKDFKRTANINKQVLRELIINLEREYGYLASINPXXXXXXXXXXXXYDEIIA 120 F G++ TK+FKR ANINKQ++RELIIN E++YGYL S+NP Y+EIIA Sbjct: 61 SFHGESNCTKEFKRAANINKQIIRELIINREKDYGYLGSVNPKKQQLSLQKLTKYNEIIA 120 Query: 121 RENNPENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVVQKMGNFDSVQANPYRPRFKR 180 ENNP+NPD PVTSGLAS +PRLSR EK ++ + E W VV + GNFD+VQ NPYRPR KR Sbjct: 121 SENNPDNPDAPVTSGLASVKPRLSRVEKQKERELEKWTVVHQSGNFDTVQINPYRPRIKR 180 Query: 181 F 181 F Sbjct: 181 F 181 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507968|ref|NP_109917.1| single-stranded DNA binding protein [Mycoplasma pneumoniae M129] (166 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072753.1| single-stranded DNA-binding protein (ssb) [Myco... 202 1e-054 >ref|NP_072753.1| single-stranded DNA-binding protein (ssb) [Mycoplasma genitalium G-37] Length = 160 Score = 202 bits (514), Expect = 1e-054, Method: Compositional matrix adjust. Identities = 96/165 (58%), Positives = 126/165 (76%), Gaps = 5/165 (3%) Query: 1 MNRVFLFGKLSFDPNKLQTRTNNIGASFSLACIDSSGFNDSKSYIRITAWGKVASFVLTL 60 MNRVFLFGKLSF PN+LQT+ +GA+FS+ C+DSSGFN++KS+IR+TAWGKVASF++ Sbjct: 1 MNRVFLFGKLSFTPNRLQTKNGTLGATFSMECLDSSGFNNAKSFIRVTAWGKVASFIVAQ 60 Query: 61 KPGDSVFVEGRLSTYKMNNRSDDPNSKATYALQVIADKVYRPDEENSLEQPVDKATVIDS 120 PG +FVEGRL+TYK+ N + K TYALQV ADK++ PDE+ + E+P+ K+TV+DS Sbjct: 61 NPGVMLFVEGRLTTYKITNSEN----KNTYALQVTADKIFHPDEKTTNEEPI-KSTVVDS 115 Query: 121 PFLAAKTNATENELAQAFPISLDDEDDDINPILNNDSQLEEESDD 165 PF+ K + TE E QAFP + + ++I PI ND QLEEESDD Sbjct: 116 PFMNPKASVTEAEFEQAFPHQDETDFNNITPIFENDVQLEEESDD 160 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507969|ref|NP_109918.1| ribosomal protein S18 [Mycoplasma pneumoniae M129] (104 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072754.1| ribosomal protein S18 (rpS18) [Mycoplasma genit... 124 2e-031 >ref|NP_072754.1| ribosomal protein S18 (rpS18) [Mycoplasma genitalium G-37] Length = 105 Score = 124 bits (311), Expect = 2e-031, Method: Compositional matrix adjust. Identities = 62/104 (59%), Positives = 67/104 (64%) Query: 1 MMNNEHDNFQKXXXXXXXXXXXXXXGKRMVRPLFKRSKKYCRFCAIGQLRIDLIDDLEAL 60 M+N E D Q KR +P FKR+KKYCRFCAIGQLRID IDDLEA+ Sbjct: 2 MINKEQDLNQLETNQEQSVEQNQTDEKRKPKPNFKRAKKYCRFCAIGQLRIDFIDDLEAI 61 Query: 61 KRFLSPYAKINPRRITGNCQMHQRHVXXXXXXXXXXXXVPFVKD 104 KRFLSPYAKINPRRITGNC MHQRHV VPF+KD Sbjct: 62 KRFLSPYAKINPRRITGNCNMHQRHVANALKRARYLALVPFIKD 105 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507970|ref|NP_109919.1| ribosomal protein L9 [Mycoplasma pneumoniae M129] (149 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072755.1| ribosomal protein L9 (rpL9) [Mycoplasma genital... 216 7e-059 >ref|NP_072755.1| ribosomal protein L9 (rpL9) [Mycoplasma genitalium G-37] Length = 150 Score = 216 bits (551), Expect = 7e-059, Method: Compositional matrix adjust. Identities = 103/147 (70%), Positives = 126/147 (85%) Query: 1 MKVILKQDVSNLGKRFDVVDVKDGYAIHFLFPKKLAAPLTKKSLQDRDLFLKKQQEHYEI 60 MK+ILKQDV+ LGKRFDVV+VKDG+AIHFLFPKKLAAPLTKK++ +RDLFLK+QQE Y+ Sbjct: 1 MKIILKQDVAKLGKRFDVVEVKDGFAIHFLFPKKLAAPLTKKAIANRDLFLKQQQEQYQK 60 Query: 61 NKALSHKLKEVIEQTELHFSLKEHNGRPYGSIITKQIINQAHTKGMALQKFMFKDNVRLG 120 N+AL+ KLK VIEQT L F LK+H+G+PYGSIITKQIIN A + + LQ+FMFKDNVRL Sbjct: 61 NRALAEKLKLVIEQTPLTFQLKQHDGKPYGSIITKQIINLAKQQRLDLQRFMFKDNVRLQ 120 Query: 121 FGDHEITLHIFEDTTAVLKVKVTPDNG 147 FG+H++ LH+FE+ TA L V V P+NG Sbjct: 121 FGEHKLILHLFEEITATLTVIVNPENG 147 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507971|ref|NP_109920.1| replicative DNA helicase DnaB [Mycoplasma pneumoniae M129] (473 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072756.1| replicative DNA helicase (dnaB) [Mycoplasma gen... 578 e-167 >ref|NP_072756.1| replicative DNA helicase (dnaB) [Mycoplasma genitalium G-37] Length = 446 Score = 578 bits (1490), Expect = e-167, Method: Compositional matrix adjust. Identities = 295/452 (65%), Positives = 354/452 (78%), Gaps = 10/452 (2%) Query: 26 MQALVQDAVGVDLILTKLEPKDFFGFPFNFIFQTAQENYSEGNKLFGSALLEAVKFKLDT 85 MQA+ Q++ G+DLI KLEP DFF PF IFQTA+ENY N + GS LLEAVKFKLD Sbjct: 1 MQAVAQNSEGIDLIFNKLEPIDFFATPFKLIFQTAKENYQLNNPIIGSGLLEAVKFKLDA 60 Query: 86 -DSKTQREIEGLFEDVLLKGLPFLERDIKVFVDVVKKASIFRQLKQFAXXXXXXXXXXXX 144 D T+ E+E LF +LL LP + +IK VDVVKKASIFR+L+QFA Sbjct: 61 NDQSTKSELEILFTKILLIRLPPNQTEIKTLVDVVKKASIFRRLQQFAKRVYNEEFKLKE 120 Query: 145 XXXXGYLQAIQNDFTKIIHSAFVSIPGLSYDEIVREEEELIPKVYRGELTVKGLKSGFYP 204 GYLQAIQ+DF KIIHSAF +I SYDEI +EE LI KV+RGEL + GL SGF Sbjct: 121 DRFEGYLQAIQDDFVKIIHSAFSNIFAFSYDEIANQEEALIKKVHRGELIISGLSSGFLK 180 Query: 205 LDQLTSGWKEGELIVVAARPGRGKTALLINFLQGAVNDSEKFDKNKDVLLFFSLEMRNRE 264 LDQLTSGWK GELIV+AARPGRGKTALLINF+ A +++ D DV+LFFSLEMRNRE Sbjct: 181 LDQLTSGWKPGELIVIAARPGRGKTALLINFMASA---AKQIDPKTDVVLFFSLEMRNRE 237 Query: 265 IYQRHLMLESQVNYTLTSRQRLANVYDDLIKASEVLRDLPIKIFDYSTITLDEIRAQITE 324 IYQRHLM ESQ +YTLT+RQR+ NV+++L++AS +++LPIK+FDYS++TL EIR QITE Sbjct: 238 IYQRHLMHESQTSYTLTNRQRINNVFEELMEASSRIKNLPIKLFDYSSLTLQEIRNQITE 297 Query: 325 VSKTNNVKLVVIDYLQLVNAFKNSYNISRQQEVTMISKSLKSFAKEFNVPIIAAAQLSRR 384 VSKT+NV+LV+IDYLQLVNA KN+Y ++RQQEVTMIS+SLK+FAKEFN PIIAAAQLSRR Sbjct: 298 VSKTSNVRLVIIDYLQLVNALKNNYGLTRQQEVTMISQSLKAFAKEFNTPIIAAAQLSRR 357 Query: 385 IEERKDSRPILSDLRESGSIEQDADMVLFIHRVKDEDSENQEAIGHNNIFQVELILEKNR 444 IEERKDSRPILSDLRESGSIEQDADMVLFIHR D+ E +E + N+F+VELILEKNR Sbjct: 358 IEERKDSRPILSDLRESGSIEQDADMVLFIHRTNDDKKEQEEE--NTNLFEVELILEKNR 415 Query: 445 SGPTGKVQFDFQSDVSTFRVREYNP---DGYS 473 +GP GKV+ +F+SD S+F + +Y+P D YS Sbjct: 416 NGPNGKVKLNFRSDTSSF-ISQYSPSFDDQYS 446 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507972|ref|NP_109921.1| excreted conserved protein [Mycoplasma pneumoniae M129] (454 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072757.1| lipoprotein, putative [Mycoplasma genitalium G-37] 392 e-111 >ref|NP_072757.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 398 Score = 392 bits (1006), Expect = e-111, Method: Compositional matrix adjust. Identities = 219/447 (48%), Positives = 283/447 (63%), Gaps = 56/447 (12%) Query: 1 MKYKTVKSIPLFLLG-SIVF-TACSTPQSTFHLPVQTTVSAIKKDISGXXXXXXXXXXXX 58 MK K K +PL S VF TACSTPQS+F LP QTT+S +K I+G Sbjct: 1 MKLKFYK-LPLITTAFSFVFLTACSTPQSSFFLPAQTTISTLK--INGME---------- 47 Query: 59 XXXXXXNDDNNQKGYFLETNRSTGTYDPNNSTRLIKLGESGDFHAADQNKPEEALFERLY 118 N+ GYFLET RS G+Y+P S +IKLG+ +F D K +E LF +Y Sbjct: 48 ----------NKTGYFLETQRSRGSYNPTASLTMIKLGDEKEFKNVDTTKQDEVLFANIY 97 Query: 119 GGIASLLNFRIIKPALTYWNTVTPSLKAIGKSSNLITFSQDIDETELQRALANNLIVADD 178 GGI+SLLNFRII+P LTYWN V SL IG +++LITF + +L +ALANNLIVAD+ Sbjct: 98 GGISSLLNFRIIQPMLTYWNLVNNSLSQIGSTNDLITFKDSGYKDQLAKALANNLIVADE 157 Query: 179 GNNNFWFGLKSLSFNSAKLTDNXXXXXXXXXXXXXXLKSQAQMSSTNTKNTNKKIDLRDK 238 GNNNFWFGLK+L F++ KL N + + ++ T+NTN KID R+K Sbjct: 158 GNNNFWFGLKALKFDTVKLQANNT--------------ATSSTRASTTQNTNNKIDAREK 203 Query: 239 ITLSSTMNTQGSGDNKNPSSGLIQKLVSVENIEAEFSFVKTGFNGNEIKFGDFVTENSPT 298 IT++ G+G N + +QKL+ +ENIE EFSFVKTGFNGNEIKF D+VT++SPT Sbjct: 204 ITIN------GNGGTNNDQNATVQKLIGIENIEVEFSFVKTGFNGNEIKFEDYVTDSSPT 257 Query: 299 TTQLKQVWKKKWGTELKKTNYKLQLNNFSLLLTYTPEVNKVEKGNNGDSNKGTIATPNGF 358 T+ LKQVWK KW TEL T++K +LN+F++LLTY E N+ + PNGF Sbjct: 258 TSLLKQVWKSKWNTELTHTSFKFKLNSFNVLLTYQLEANQKSQ-----------YLPNGF 306 Query: 359 SFLYPANLNETPSSSSSYWTNVTDLTKAATDTENTNLLNDLQKSQEQVNQFVAAITQNHL 418 SFL+P+NL SS SYW N+ D +K T+ ENT LL DLQK Q+QVN+FV I QNH Sbjct: 307 SFLFPSNLEGKIDSSKSYWNNLVDFSKRTTNEENTMLLTDLQKKQDQVNRFVGFIGQNHF 366 Query: 419 DVSEAALTKKQFGSLSISDFFKAIFKE 445 +S ++ +KQF S +DFFKAIF++ Sbjct: 367 TLSANSINEKQFNDASTADFFKAIFQK 393 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507973|ref|NP_109922.1| membrane export protein family [Mycoplasma pneumoniae M129] (417 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 352 5e-099 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 321 9e-090 ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 72 1e-014 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 352 bits (902), Expect = 5e-099, Method: Compositional matrix adjust. Identities = 193/421 (45%), Positives = 269/421 (63%), Gaps = 12/421 (2%) Query: 1 MQFHAVYQNNDTKANLDFALNISTINFATLQELQNSFDLQGSDLTAGLFYKYSVNKLTS- 59 M F Y+ + NL F L T NF LQELQNSF+ G+DL LF+K +NKL Sbjct: 72 MDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLFWKPLINKLVDK 129 Query: 60 GTNDLTTIAKTALGENIIQKQVSLTQSIIK--PRLEAAKTQYKQDIIAPFAKERQAALAQ 117 NDLT+IAKTA+ +++ ++ S++K +L+ AKT+++++II PF KER+ A A Sbjct: 130 NQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPFKKEREKAKAD 189 Query: 118 HLKEIEEAKXXXXXXXXXXXXXXXXXXXXVKNVAETQ-QFNDSLTSAQKFKEYWLKQGKD 176 + EE + K + E Q QFN S +A++FK+YW Q KD Sbjct: 190 Y----EEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKDYWKNQKKD 245 Query: 177 VTKKVELIQALKSSFFRNQNRTFNFLIAGFRTAI-DWYYNQEKNNTTAKNNAFGKNGIQF 235 VT K +LI ALK+SF ++N+TF+ LI F A D+Y N +K+ + AF + GIQF Sbjct: 246 VTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKAFSEKGIQF 305 Query: 236 PVAGFQGIYMSQWLRDELSGKTDIKLNLKSLSVQNENKNSSINWNKQKRIEIKQVKPFNY 295 P G +G+YMS WLR +L+ TDIKLNL S+ ++N+ N +I+W K IE +Q P+ + Sbjct: 306 PRQGLEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENNPTIDW-KNNGIEFRQHYPYKF 364 Query: 296 SFEINLKYTGSYNVSLWYLIGAAIGGIPTSWSGTMDMKFIVDGDLDSGIVTKQDYPGSKF 355 FEI++KY G Y ++ + A GIP+SW+G MD+KFIVDGDLD +V DYPGS F Sbjct: 365 KFEIDIKYQGGYKLTGLFSWFAPFSGIPSSWNGEMDVKFIVDGDLDYNLVQNTDYPGSLF 424 Query: 356 EFTEDKLWFTLHVKQQIKVKEQGFMNLLKGQSLDNLDLRTGTTKPPVVDLASYLHFVILT 415 +F +++L FTLHVK+QIKV++ FM+LLK Q+L NLDLR G TKPPVVDLASYLH+++L Sbjct: 425 QFKDNQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNGATKPPVVDLASYLHYLVLN 484 Query: 416 A 416 + Sbjct: 485 S 485 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 321 bits (822), Expect = 9e-090, Method: Compositional matrix adjust. Identities = 192/437 (43%), Positives = 262/437 (59%), Gaps = 25/437 (5%) Query: 1 MQFHAVY-QNNDTKANLDFALNISTINFATLQELQNSFDLQGSDLTAGLFYKYSVNKLTS 59 MQF VY +T NLDF L T+NFA LQ+LQN+F G+DL+ LF+ +VNKLT Sbjct: 218 MQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTD 277 Query: 60 GT-NDLTTIAKTALGENIIQKQVSLTQSIIK-----PRLEAAKTQYKQDIIAPFAKERQA 113 NDLT IAKT +GE+ Q V+L +S+I+ P ++ A +++ ++ PF KER+A Sbjct: 278 NAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQA---FEERVLTPFKKEREA 334 Query: 114 ALAQHLKEIE--------EAKXXXXXXXXXXXXXXXXXXXXVKNVAETQQFNDSLTSAQK 165 A + +E + + K E + + S S + Sbjct: 335 AKKAYEEEQRRLEEERKRQLEELRRREAEEKRKAEEAKRNQEKARREREAYEKSFNSFKD 394 Query: 166 FKEYWLKQGKDVTKKVELIQALKSSFFRN--QNRTFNFLIAGFRTAIDWYYNQEKNNTTA 223 FK YWL +GKDVTKK +LI ALK++ +NRTF+ LI GF + ++ Y+N KN+ Sbjct: 395 FKFYWLTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGVERYFNANKNDKEL 454 Query: 224 KNNAFGKNGIQFPVA--GFQGIYMSQWLRDELSGKTDIKLNLKSLSVQNENKNSSINWNK 281 K AFG+ GIQFP A G G+YMS +LR EL+ K LNLK + V+N +++ + W K Sbjct: 455 KKLAFGEKGIQFPRADAGVNGLYMSNFLRHELTSKAKFSLNLKDIKVENTVEDTQLYW-K 513 Query: 282 QKRIEIKQVKPFNYSFEINLKYTGSYNVSLWYLIGAAIGGIPTSWSGTMDMKFIVDGDLD 341 I +KQ P+ ++ I +KY G YNV W + A I GIPT WSG M++ F+V+GDL Sbjct: 514 DNGIHLKQANPYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDWSGEMNLTFVVNGDL- 572 Query: 342 SGIVTKQDYPGSKFEFTE-DKLWFTLHVKQQIKVKEQGFMNLLKGQSLDNLDLRTGTTKP 400 S IV K DYPG+ F+FT+ ++L FTL V++QIKV FM LLK Q+L NL L +G TKP Sbjct: 573 SEIVDKHDYPGTFFQFTDKNELLFTLAVREQIKVDNNHFMGLLKSQNLHNLQLASGATKP 632 Query: 401 PVVDLASYLHFVILTAK 417 PVVDLASY HFV+LT K Sbjct: 633 PVVDLASYFHFVLLTEK 649 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 72.0 bits (175), Expect = 1e-014, Method: Compositional matrix adjust. Identities = 104/448 (23%), Positives = 181/448 (40%), Gaps = 53/448 (11%) Query: 10 NDTKANLDFALNISTINFATLQELQNSFDLQGSDLTAGLFYKYSVNKLTSGTNDLTTIAK 69 N + + DF + T NF+ ++ F+ + + L + K +V+KL+ +D T IA Sbjct: 220 NKSNVDFDFDFILKTDNFSDIENFNEIFNRKPA-LQFRFYTKINVHKLSFNGSDSTYIAN 278 Query: 70 TALGENIIQKQVSLTQSIIKPRLEAAKTQYKQDIIAP-FAKERQAALA--QHLKEIEEAK 126 L + ++ L +SI LE AK ++ ++ + P + K R+A LA + + I E + Sbjct: 279 ILLQDQFNLLEIDLNKSIYALDLENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQ 338 Query: 127 XXXXXXXXXXXXXXXXXXXXVKNVAETQQ-FNDSLTSAQKFKEYWLKQGKD--------- 176 K V E Q +L + F ++ G+D Sbjct: 339 RRQEEERARILKELKEKAEKDKRVKEAQNNLQKALGNLDTFFNFF-SSGQDRVLLGFDPN 397 Query: 177 ---VTKKVELIQALKSSFFRNQNRTFNFLIAGFRTAIDWYYNQEKNNTTAKNNAF----- 228 V + L +AL+ S+ + TF + G++ + N + AF Sbjct: 398 KYNVQTREGLFKALQISYSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQYAFG 457 Query: 229 -GKNG-------IQFPVAGFQGIYMSQWLRDELSGKTDIKL----NLKSLSVQNENKNSS 276 G N + P G++GI MS WLR L T L N+++ + + N Sbjct: 458 LGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKH 517 Query: 277 INWNKQKRIEIKQV---------KPFNYSFEINLKYTGSYNVSLWYLIGAAIGGIPTSWS 327 I W ++ + K + + I+ + G W + A G IP SWS Sbjct: 518 I-WISPHTFKLNREYGDGERFKGKAYRFKLSISFELEGHLTAHWWTI--AFRGSIPGSWS 574 Query: 328 GTMDMKFIVDGDLDSGIVTKQDYPGSKFEFTED-KLWFTLHVKQQI-KVKEQGFMNLLKG 385 G + + DGD+ + ++ T+D KL F H Q++ V + LL+ Sbjct: 575 GKLRVTHEFDGDVP---YYRLHTTPPQYRLTDDMKLLFVPHSIQRVTAVGNESINGLLRS 631 Query: 386 QSLDNLDLRTGTTKPPVVDLASYLHFVI 413 Q+L NL+ ++ P +DL SY+ + I Sbjct: 632 QNLHNLERQSYEATAP-IDLISYMLYAI 658 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507974|ref|NP_109923.1| uracil DNA glycosylase [Mycoplasma pneumoniae M129] (240 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072759.1| uracil DNA glycosylase (ung) [Mycoplasma genita... 279 2e-077 >ref|NP_072759.1| uracil DNA glycosylase (ung) [Mycoplasma genitalium G-37] Length = 245 Score = 279 bits (713), Expect = 2e-077, Method: Compositional matrix adjust. Identities = 130/232 (56%), Positives = 165/232 (71%) Query: 1 MEQLLDQFLSGVLSEWKAFILQEAKQTYFQELLAKLKNVEQELTPKASQVFRPFSFFAPN 60 M+ L + +S VL W+AFI +E K+ YFQ LL KLK ++ + PK +FR FSFF P Sbjct: 3 MDDLFQRMVSCVLPSWRAFIDEEVKKPYFQALLEKLKALKATIIPKPELIFRVFSFFKPI 62 Query: 61 NTKLIIYGQDPYPNPQHACGLSFASNAPKLPQSLKRMILRLQQEYPELAGQNHWTKQLLE 120 +TK+II+GQDPYP+P ACGL+FASN K P SLKR+ILRL++EYP L ++ W + L Sbjct: 63 DTKVIIFGQDPYPSPNDACGLAFASNNSKTPASLKRIILRLEKEYPSLKQESSWQQNFLL 122 Query: 121 GWAQQGILLLNGVFTTNAFQTNAHRNWGWEQFNCHLLDFLLSQKLYVLLVFLGKQTENFV 180 WA+QG+LLLNG+ TT F NAH+NWGWE+FNC+LL FL +Q + LLVFLG QT+NFV Sbjct: 123 NWAEQGVLLLNGILTTTVFIRNAHKNWGWEEFNCNLLTFLKNQNIKPLLVFLGVQTKNFV 182 Query: 181 LKKIGGASQFASLSYPHPSPLTGRKFFDHPDALFKQINQWLKHHNHTPIDWT 232 +K IG F LSYPHPSPL+G F +P+ LFK IN WLK HN I+W Sbjct: 183 VKSIGNVDGFEHLSYPHPSPLSGNLFLTNPNDLFKTINNWLKQHNQKIINWA 234 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507975|ref|NP_109924.1| Glu-tRNA amidotransferase subunit C AND unknown TM contating N terminal domain; bidomainal [Mycoplasma pneumoniae M129] (479 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072760.1| Glu-tRNA amidotransferase subunit gatC-related ... 577 e-166 >ref|NP_072760.1| Glu-tRNA amidotransferase subunit gatC-related protein [Mycoplasma genitalium G-37] Length = 477 Score = 577 bits (1486), Expect = e-166, Method: Compositional matrix adjust. Identities = 281/468 (60%), Positives = 348/468 (74%) Query: 12 TSDISTSGFIYFAVVFVAIMGYXXXXXXXXXXXXXRYPKNTPKIGVGNXXXXXXXXXXXX 71 TSDISTSGFIYFAVVF+ I+ Y RYPKNTPKIGV N Sbjct: 10 TSDISTSGFIYFAVVFLIIIVYLFFKNILFLFFFKRYPKNTPKIGVSNITTIAMIIAVAV 69 Query: 72 XXXXXXXXXXXXXXXXXFRGYPGFRVTLELILVKISGLLFGPIVGIFSAATIDFLTVIFS 131 FRGYPGFRVTLELILVKISGLLFGPI+GIFSAATIDFLTVIFS Sbjct: 70 SVVLVLMALAGGLTAALFRGYPGFRVTLELILVKISGLLFGPIIGIFSAATIDFLTVIFS 129 Query: 132 GGVFNVGYVLGAILTGMIAGILREVLISTALLHNRNLSDFAYLVLSIGMVIAAFLITQFF 191 GGVFN+GYVLGAILTGMIAGILREVLIST+ L+N+ LSDFAYLVLS+GMV A+FL+TQFF Sbjct: 130 GGVFNIGYVLGAILTGMIAGILREVLISTSFLNNKTLSDFAYLVLSVGMVFASFLVTQFF 189 Query: 192 VLGISNNLKEIKGDEEFRLKFNAPSIVFELSLTQYANILLYFTIAIVIAMLVLYIVWLVK 251 V+ ++ NL + +++ L+FNA + F +SL +Y I+ YF + ++I M+VLY VW++K Sbjct: 190 VISVTQNLSAFQSNDQIVLRFNASPLNFSISLQRYVQIIFYFAMVVIITMVVLYFVWIIK 249 Query: 252 QRHLSFEHSRFFYRSYKHANHQFTLFVLTKENWFYLILNVITLASTSLLMINIAFIPIFD 311 Q+H ++ +S+FF+R YKHANHQFTLFVLTKENWFYLILNVITLA+TSLLMINIAFIPIFD Sbjct: 250 QKHFNYAYSKFFFRRYKHANHQFTLFVLTKENWFYLILNVITLATTSLLMINIAFIPIFD 309 Query: 312 TQTTGQTYEFWLLARLLFAPVIFXXXXXXXXXXXXXXXXXXXKGFKTAVSKNQRKTLKQS 371 TQTTGQTY+FWLL RLLFAP+IF KGFKT S+ Q K +K+S Sbjct: 310 TQTTGQTYDFWLLVRLLFAPLIFLLDIIVIYPILLLLTPIMLKGFKTVASETQTKGIKKS 369 Query: 372 FTDLQSVVLPIINKRKHQQLRQEELKRLARATHFDLTEGEMEKLLVEFKTITQSFDRVMN 431 F+D+QS+++P + K QQL ++E+++LA+ DL++ E++ L+ EFK IT+SF++V Sbjct: 370 FSDMQSLIMPNVISHKKQQLIRKEMQQLAKTIRIDLSDKEVDALVEEFKEITKSFNKVTK 429 Query: 432 IDTTSVEPMYAPFNTSPTPLRKDKVIVEKHPEKLLANCKEMSVGFVKV 479 IDTT+V+PMYAPF SPTPLRKDK +V+KH ++LL NC E+ GFVKV Sbjct: 430 IDTTNVQPMYAPFEFSPTPLRKDKPVVDKHAKQLLNNCCEVKTGFVKV 477 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507976|ref|NP_109925.1| Glu-tRNA amidotransferase, subunit A (gatA) [Mycoplasma pneumoniae M129] (478 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072761.1| Glu-tRNA amidotransferase, subunit A [Mycoplasm... 635 0.0 >ref|NP_072761.1| Glu-tRNA amidotransferase, subunit A [Mycoplasma genitalium G-37] Length = 477 Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/477 (64%), Positives = 372/477 (77%) Query: 1 MKSQILKLQQTLTKKPASINPLLQQIDGAINEHWSSNFLLKNTVEWAQAQAPKNRSKSPL 60 M+S IL L+ L KKP++IN +L I+ I + SSNFLLKNTVE + K+ K L Sbjct: 1 MRSNILSLRAILDKKPSAINDVLTSINAKIELNKSSNFLLKNTVEIYSKKINKSDEKILL 60 Query: 61 NNIPFVLKDNIATKGIVTTGGSRFLEDYIPPFSATVFELLNNSGALLVGKANLDEXXXXX 120 NNIP+VLKDNIATK IVTTGGS FL++Y+PPFSATVFELL +GALLVGKAN+DE Sbjct: 61 NNIPYVLKDNIATKDIVTTGGSLFLKNYLPPFSATVFELLEMNGALLVGKANMDEFGLGG 120 Query: 121 XXXXXXXXXVHHPWNETLIPXXXXXXXAYAVARGIVPFSIGTDTGDSVRRPASICNIVGF 180 VHHP N +LI AYAVA+ IVPFSI TDTGDS+RRPASICN+VGF Sbjct: 121 TGSYSAFGVVHHPENSSLIAGGSSSGSAYAVAKDIVPFSIATDTGDSIRRPASICNVVGF 180 Query: 181 KPTYGLISRNGVYPYAPSLDHVGIFARYVYDVALVSDEIIKHDKADFSAQKSPDAGKFTR 240 KPTYGLISRNGV+PYAPS+DHVGIFA++V D+A+VSD +IKHDK DFS+QKSPD +F Sbjct: 181 KPTYGLISRNGVFPYAPSMDHVGIFAKFVSDIAIVSDVVIKHDKTDFSSQKSPDENQFFN 240 Query: 241 SLKESFNKQIKIGYLKPLEEWFDIELSKKWNSLKERITLEGCELIPFHFPLELLEVIDPV 300 L F + I+ GYLKPLE+ F+ L KKWN+LK+ + + +LIP F +ELL+VID + Sbjct: 241 ELAIPFTRSIRFGYLKPLEKLFNKHLQKKWNNLKKTLEQKNYQLIPLDFDVELLKVIDSI 300 Query: 301 YKLISYSEAVSCYSNLTGIVFGQKLFEPNQASDFSKTITANRDRFFGEQLKRRFIIGAFG 360 YK+ISYSEAVSCYSNLTGIVFGQK+FEPN S+F +TIT NRD+F G+QLKRRF+IGAF Sbjct: 301 YKIISYSEAVSCYSNLTGIVFGQKVFEPNSPSNFDQTITRNRDQFLGKQLKRRFVIGAFA 360 Query: 361 TDKNNFTKYFEKAQKIRRVMVDAYLNLFKEADFIVSPSASGFTKTIAAVQKGESFTNLVD 420 TD+ NF KYFEKAQKIRRV+VD +LNLF + DF++SPSAS F TI +Q + +TN++D Sbjct: 361 TDEKNFEKYFEKAQKIRRVLVDNFLNLFSDVDFVLSPSASCFASTIEDIQANKPYTNIID 420 Query: 421 DFLQLANFAGNPSITIPWLVKQKDQTIGLSVNANCFHDKQLLQVAAWLEELFQIEHD 477 DFLQLANFAG+PSITIPWLV+ KDQTIGLS++ANCF DK+LLQ+A W E+LF + HD Sbjct: 421 DFLQLANFAGSPSITIPWLVQTKDQTIGLSISANCFEDKKLLQIAYWFEQLFDLNHD 477 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507977|ref|NP_109926.1| Glu-tRNA(Gln) amidotransferase, subunit B (gatB) [Mycoplasma pneumoniae M129] (478 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072762.1| Glu-tRNA amidotransferase, subunit B (gatB) [My... 691 0.0 >ref|NP_072762.1| Glu-tRNA amidotransferase, subunit B (gatB) [Mycoplasma genitalium G-37] Length = 477 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/477 (72%), Positives = 397/477 (83%) Query: 2 MINFEAIIGIEVHVVLNTATKMFSPAPNQAQNATPNQFINAIDLGLPGTMPQVNEQAVQK 61 MINFEAIIGIEVHVVLNTA+KMFS APN+ N N FI+ IDLGLPGT+PQVNE AV K Sbjct: 1 MINFEAIIGIEVHVVLNTASKMFSKAPNRVDNQKINHFIDPIDLGLPGTLPQVNELAVYK 60 Query: 62 ALILADALNMQRVQPVLVFDRKHYFYQDLPKGFQITQQNFPIAQNGYVEIVENNKAQRII 121 AL+LADAL M+ V LVFDRKHYFYQDLPKGFQITQQN+P A+NG V I + + I Sbjct: 61 ALLLADALKMKTVTNKLVFDRKHYFYQDLPKGFQITQQNYPFAKNGVVTINVDAIEKPIY 120 Query: 122 IERFHLEEDTAKQHFVDGQILLDFNRCGAPLIEVVTAPVIKSAKQSKAYLQKLRQILIVN 181 I+RFHLEEDTAKQHF QILLDFNRCGAPLIEVVT PVI +AK++KAYLQKLRQILIVN Sbjct: 121 IDRFHLEEDTAKQHFNHDQILLDFNRCGAPLIEVVTLPVINTAKEAKAYLQKLRQILIVN 180 Query: 182 NISNAKLEDGSMRSDCNVSVRLKGQTAFGTKVEIKNINSLNNVEKAIDLEIARQVKALIK 241 NISNAKLEDGSMRSDCNVSVRLKGQ GTK+EIKNINSLNNVEKAIDLEI RQVKALI Sbjct: 181 NISNAKLEDGSMRSDCNVSVRLKGQRQLGTKIEIKNINSLNNVEKAIDLEINRQVKALIN 240 Query: 242 GEPVQQVTLTYDDKTNTNVFMRKKDNSVDYRYFIEPNIMSSNIDELLQKPNKAFNLTEFF 301 GE + Q TL++DDKTN NVFMRKKDN++DYRYFIEPNIM+SNID+LL + AF L +F Sbjct: 241 GETLSQATLSFDDKTNNNVFMRKKDNTIDYRYFIEPNIMTSNIDDLLLEKPVAFQLEQFQ 300 Query: 302 TKLKEAGVNEQLNQLVVDDLTLFNAYTKINSVINSPQDTIRWLCIELMGQLNKLQKPLKD 361 +L ++ VN QL QLVVDD T+F+A+ INSVI +PQ+TIRWLCIEL+GQLNK L Sbjct: 301 KELIDSNVNPQLVQLVVDDATIFSAFQTINSVIKNPQETIRWLCIELIGQLNKTNSSLTA 360 Query: 362 KTIDHLIILIQMVQKGTVNQKQAKQLIELMLDNGQDPQSLAKLHNLEQITDEKQLTQIIQ 421 I LI LI+M++ VNQKQAKQLI LM++ +DP+SLAKLHNLEQITD K+L +II+ Sbjct: 361 NLIQDLITLIEMLKAAKVNQKQAKQLITLMIETKKDPKSLAKLHNLEQITDPKELQKIIK 420 Query: 422 QIFKENEGEILKNLDRVERIQKLIIGQVMQRTHNRANPQQVFIIVEKLLHDFSERAS 478 +IF+ENE EILKN+DR+ERIQKLIIGQVM +T+NRANPQQVFIIVE +LH+ ER S Sbjct: 421 KIFQENEKEILKNIDRIERIQKLIIGQVMHKTNNRANPQQVFIIVENMLHEVRERDS 477 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507978|ref|NP_109927.1| hypothetical protein MPN239 [Mycoplasma pneumoniae M129] (222 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072763.1| hypothetical protein MG101 [Mycoplasma genitali... 289 2e-080 >ref|NP_072763.1| hypothetical protein MG101 [Mycoplasma genitalium G-37] Length = 222 Score = 289 bits (740), Expect = 2e-080, Method: Compositional matrix adjust. Identities = 138/219 (63%), Positives = 173/219 (78%) Query: 4 AKEQAKKGQIIYRYILLKIQSFKWPAGTRIFSERQLEIRFASSRSLIRTILNTLLGKDLI 63 KE AKK QIIYRYI+LKIQSF+WPA TRIFSERQLEIRF SSRS IR++L TLL K++I Sbjct: 4 GKEIAKKNQIIYRYIILKIQSFEWPANTRIFSERQLEIRFNSSRSQIRSVLATLLNKNII 63 Query: 64 RHTKGNAGYFVAKNAGFSFFHKTQDNKLPKWAKLSTLMKNHLREVDRDVFSSIDSGVDFG 123 R+TK GYFV K+ GFSFFHKTQDN K+AKLSTL+K L + D VF++IDS V Sbjct: 64 RYTKNTPGYFVCKDVGFSFFHKTQDNLKVKYAKLSTLIKKLLSQDDASVFANIDSTVHLD 123 Query: 124 NFKGLEAKLFDENKKNFLNLSFFGKDDVLQIFSEQNLQEQFFKDFAYNGIVVERKSSLIC 183 FKG+EAK FDENKK+FLN+ FF KDD+L I E NLQ+QFF++FAYNGI +E++ + Sbjct: 124 KFKGIEAKFFDENKKHFLNVCFFAKDDILNILDENNLQQQFFREFAYNGIAIEKRHCVTS 183 Query: 184 VDDETKNLLIYDLFYDDNNKFIVAMRSEYLNPRIKIINA 222 VD E+ L++YD++YDDN+ F+VA +S +LNP +K+INA Sbjct: 184 VDKESGCLVMYDMYYDDNDNFVVASKSNFLNPELKVINA 222 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507979|ref|NP_109928.1| thioredoxin reductase [Mycoplasma pneumoniae M129] (315 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072764.1| thioredoxin reductase (trxB) [Mycoplasma genita... 413 e-117 >ref|NP_072764.1| thioredoxin reductase (trxB) [Mycoplasma genitalium G-37] Length = 315 Score = 413 bits (1062), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/313 (65%), Positives = 247/313 (78%) Query: 1 MLKVKSDFLTKDQVIYDVXXXXXXXXXXXXXXXXKRANLNLAIIEGSTPGGKVVKTNIVE 60 MLKV +DFLTKDQVIYD+ KRANLNLAIIEG+TPGGK+VKTNIVE Sbjct: 1 MLKVNADFLTKDQVIYDLVIVGAGPAGIASAIYGKRANLNLAIIEGNTPGGKIVKTNIVE 60 Query: 61 NYPGYKSITGPDLGLEMYNHLIDLEPTFFYANLIKLDKAADTFILYLDDKTVVFAKTVIY 120 NYPG+K+ITGP+LGLEMYNHL+ EP FY NLIK+D DTFILYLD+KT VF+KTVIY Sbjct: 61 NYPGFKTITGPELGLEMYNHLLAFEPVVFYNNLIKIDHLNDTFILYLDNKTTVFSKTVIY 120 Query: 121 ATGMLERKLGVAKEDHFYGKGISYCAICDGSLYKDQVVGVVGGGNSAIQEALYLASMAKT 180 ATGM ERKLG+ KED+FYGKGISYCAICD +LYK + VGVVGGGNSAIQEA+YL+S+AKT Sbjct: 121 ATGMEERKLGIEKEDYFYGKGISYCAICDAALYKGKTVGVVGGGNSAIQEAIYLSSIAKT 180 Query: 181 VHLIHRREGFRADETALNKLRNLPNVVFHLNYTVKELLGNNTLNGIVLQNTLDHSTKQID 240 VHLIHRRE FR+D + KL+ + NVVFHLN TVK+L+G L + L +T+D S +I Sbjct: 181 VHLIHRREVFRSDALLVEKLKKISNVVFHLNATVKQLIGQEKLQTVKLASTVDKSESEIA 240 Query: 241 LNCVFPYIGFESITKPVEHLNLKLDPQGFLITNEQMETSLKGLFAAGDCRSKHFRQIGTA 300 ++C+FPYIGFES KPV L L LD GF++ +E M+T++KG + AGDCRSK FRQI TA Sbjct: 241 IDCLFPYIGFESNNKPVLDLKLNLDQNGFILGDENMQTNIKGFYVAGDCRSKSFRQIATA 300 Query: 301 INDGIIAVLTIRD 313 I+DG+ AVL +RD Sbjct: 301 ISDGVTAVLKVRD 313 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507980|ref|NP_109929.1| hypothetical protein MPN241 [Mycoplasma pneumoniae M129] (280 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072765.1| hypothetical protein MG103 [Mycoplasma genitali... 321 4e-090 >ref|NP_072765.1| hypothetical protein MG103 [Mycoplasma genitalium G-37] Length = 280 Score = 321 bits (823), Expect = 4e-090, Method: Compositional matrix adjust. Identities = 158/280 (56%), Positives = 206/280 (73%), Gaps = 1/280 (0%) Query: 1 MSFSVQIKHELATNPLIKTEWSSFLAGYFQNGLKLLATGQWSFKTSTATLKALFSNALQF 60 M+FS QIK EL N LI W+ FLAG+FQN LKLL WSFK + LK F L+F Sbjct: 1 MTFSTQIKAELVQNKLIDKHWNVFLAGFFQNNLKLLYNRNWSFKVQSEALKEQFVQNLKF 60 Query: 61 SFQIHETSTHCEFSFRASQTEVDQLLAFDATQSDLPLQKAYVIGAFLSGGSVSDLLHSSN 120 F+ + + F F A ++ LL D T S+L +++ Y+I AFLSGGSVSDL++S+N Sbjct: 61 DFKTKASKKYFLFEFNADINVINTLLKLDVTTSELVVKQVYLIAAFLSGGSVSDLINSNN 120 Query: 121 FHLQISTNNELQIKQLMKLFHPFKQTTKRHQLLVYVKSYQAICDFFKLVEAFDGYLAFEE 180 FHLQIS+NNE QI+QL+KLF FK+T K++QL+VY+KSY+ IC+F KL++AFDGYLAFE Sbjct: 121 FHLQISSNNEFQIQQLLKLFSFFKKTVKQNQLVVYLKSYEKICNFLKLIQAFDGYLAFEN 180 Query: 181 NQLQKNFALEQVRKSNLEIANLMRTLKTSTSTAE-QLKILINSADFKKQSLNFQRFCLVK 239 QL+K+F L Q+RKSNLE+ANLM+T++++ T + QLK I S+ F K+ LNFQR+CL+K Sbjct: 181 KQLEKSFTLNQLRKSNLEVANLMKTIRSNNQTNQLQLKSFIKSSSFAKRPLNFQRYCLIK 240 Query: 240 LDHPDWSLEQIAQFFERKYKVQITRSGIQHLNAKLKKLNQ 279 DHPDWSLEQIA FF KY ++I+RSGIQH + LKKL Q Sbjct: 241 SDHPDWSLEQIANFFFTKYNIKISRSGIQHFSVNLKKLCQ 280 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507981|ref|NP_109930.1| hypothetical protein MPN242 [Mycoplasma pneumoniae M129] (76 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507982|ref|NP_109931.1| 3'-5' exoribonuclease, RNase R [Mycoplasma pneumoniae M129] (726 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072766.1| virulence-associated protein homolog (vacB) [My... 1164 0.0 >ref|NP_072766.1| virulence-associated protein homolog (vacB) [Mycoplasma genitalium G-37] Length = 725 Score = 1164 bits (3010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/726 (74%), Positives = 640/726 (88%), Gaps = 1/726 (0%) Query: 1 MKVLTDLQKRIFAIVKKENGKPIPPGIVVRMMENQAGFPGKQQVYRAIDDLLEWHIFRKS 60 MKVLT+LQK+IF IVKKENGKPIPPGIVVRMMEN FPGK +YRAIDDLL+W I RK+ Sbjct: 1 MKVLTELQKQIFTIVKKENGKPIPPGIVVRMMENSPNFPGKHLIYRAIDDLLDWAILRKA 60 Query: 61 GGATNQLLINYELADPVLDQKFQGILNLGNKNTGFVRPLDDDKTVYYIHFSNLAGALDGD 120 GG TNQLL+NYE A+P+LD+K QGIL LGNKN+GF+R LDDDKTVYY+H+SNL GALDGD Sbjct: 61 GGVTNQLLVNYEPAEPLLDKKLQGILTLGNKNSGFIRSLDDDKTVYYVHYSNLTGALDGD 120 Query: 121 LVEFCPLDKPQVGDKFDAAVLKIVKRSRVLYAGNFLIEYSDFGQEFRIVADNPRFYLTPI 180 LVEFC LDKPQ GDKFDAAV+ I+KR+R+LYAGNFL++ ++F E++IVADNPRFYLT I Sbjct: 121 LVEFCKLDKPQFGDKFDAAVITILKRARILYAGNFLVDQNEFALEYKIVADNPRFYLTMI 180 Query: 181 VNKASVPAELESNTKVAFQIDEYDPANNLCKVSIQQILGNNDEPLINLKAIMLDHSIVFE 240 VN S+P L SNTK+AFQIDEYDP NNLCKVS+QQ+LGNND+PLIN+KAIMLD+SIVFE Sbjct: 181 VNPDSIPNNLASNTKIAFQIDEYDPDNNLCKVSVQQVLGNNDDPLINIKAIMLDNSIVFE 240 Query: 241 DNDVVEQQAAKLQFDEKEQSKPYRKDLTELAFVTIDPATSKDLDDAIYVKRTDKGFVLYV 300 NDVVEQ A KL FD +EQ K YR+DLT+LAFVT+DP TSKDLDDAIYVK GFVLYV Sbjct: 241 TNDVVEQHANKLSFDTEEQHKAYRQDLTDLAFVTVDPTTSKDLDDAIYVKTIPTGFVLYV 300 Query: 301 AIADVAYYVQRNSELDIEARHKTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCE 360 AIADVA+YV RNSE+DIEA+HKTSSIYLPG+YVVPMLPE+LSN+LCSLNP +KRYVVVCE Sbjct: 301 AIADVAHYVNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQKRYVVVCE 360 Query: 361 LNFDHEARLNFSEVYPATIVSQRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSEL 420 ++FD++ R+ +++YPATI+S+ RF+Y +VN WL + L + TV+ SLKA FTLS+L Sbjct: 361 ISFDNQGRIKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDE-TVINSLKAAFTLSDL 419 Query: 421 IAEQRKKKGTIDLSHSETEVVVDQNYYPIEIRFLTHGKAETMIENLMVVANEAVAWTLTN 480 I QR+K+GTIDLSH ETE+VVD++Y+PI+I FL H KAETMIENLMVVANE VAW LTN Sbjct: 420 IQAQRQKRGTIDLSHKETEIVVDEHYFPIKINFLVHDKAETMIENLMVVANETVAWVLTN 479 Query: 481 HKVHLPYRVHPRPSKKKLQMLLENIVELKITQPNFVLDTVTSTQIAAWLKENKDNPSYDI 540 +K+ LPYRVHPRPSKKKLQ L+E + EL IT+P F LDTVTS+QIA+WL ENKDNPSY+I Sbjct: 480 NKIALPYRVHPRPSKKKLQSLIETVGELNITKPQFNLDTVTSSQIASWLNENKDNPSYEI 539 Query: 541 FVILLLRTLGKAFYIVNPLIHFSIGSHHYTHFTSPIRRYADLTVHRLLWMNLFTPERFTD 600 FVILLLRTLGKAFY VNPL+HFSIGS+HYTHFTSPIRRY DLT+HRLLWM+LFTP++FTD Sbjct: 540 FVILLLRTLGKAFYSVNPLMHFSIGSNHYTHFTSPIRRYIDLTIHRLLWMHLFTPDQFTD 599 Query: 601 TEREQLNAELEQICETINDTEIKINGCERTANDYLTTLYLSKQVGQTFHGFISAITSFGI 660 ER+QL ELE+I +T+NDTEIKI CER ANDYLTTL LSKQ+G+TF GFISAITSFGI Sbjct: 600 NERDQLKQELEKIADTVNDTEIKIINCERNANDYLTTLLLSKQIGKTFSGFISAITSFGI 659 Query: 661 FMRMDENNFDGLIKITSIPEDFFVFEKDRMVLRGKRTNKVFRIGDRLTAKLTEIDTVQKR 720 FMRMDENNFDGLIKIT+IP+DFF+FEK++MVL+G++TNKV++IGDRL AKL+EID +QKR Sbjct: 660 FMRMDENNFDGLIKITTIPDDFFIFEKEKMVLKGRKTNKVYKIGDRLEAKLSEIDFIQKR 719 Query: 721 AILTLV 726 AILTL+ Sbjct: 720 AILTLI 725 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507983|ref|NP_109932.1| hypothetical protein MPN244 [Mycoplasma pneumoniae M129] (202 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072767.1| hypothetical protein MG105 [Mycoplasma genitali... 293 7e-082 >ref|NP_072767.1| hypothetical protein MG105 [Mycoplasma genitalium G-37] Length = 200 Score = 293 bits (751), Expect = 7e-082, Method: Compositional matrix adjust. Identities = 141/173 (81%), Positives = 160/173 (92%), Gaps = 1/173 (0%) Query: 29 NKRTRSFVIRTFTGLF-RSKHTTSQKNFYDNLTSTLLRLSTDKIGAIIAIENQDSLESYV 87 NKR R++V+RT+T +F +SK +KNF+DNLTSTLLRLS DKIGAIIAIE +DSLE Y+ Sbjct: 28 NKRVRNYVVRTWTSVFSKSKQNLDKKNFFDNLTSTLLRLSVDKIGAIIAIEKRDSLEPYI 87 Query: 88 NIGYRVTSDFSPELLVTIFYNKQSPLHDGAVIVRDYQIVSVSSYFPMTRQLIDVSYGSRH 147 NIGYRV+SDFSPELLVTIFYNK SPLHDGAVIVRDY+I+SVSSYFPMTRQLIDVSYGSRH Sbjct: 88 NIGYRVSSDFSPELLVTIFYNKSSPLHDGAVIVRDYKIISVSSYFPMTRQLIDVSYGSRH 147 Query: 148 RSALGLTEKCDAIVFIVSETTGKISVAVRGVIKTLSSNSDRLQDQIIHYLTVK 200 RSALGL+EK DA+VFIVSETTGKISVA++GVIKTLSSNSDRLQD+IIHYL+ K Sbjct: 148 RSALGLSEKSDAVVFIVSETTGKISVALKGVIKTLSSNSDRLQDEIIHYLSSK 200 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507984|ref|NP_109933.1| polypeptide deformylase, probably excreted form [Mycoplasma pneumoniae M129] (216 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072768.1| polypeptide deformylase (def) [Mycoplasma genit... 308 4e-086 >ref|NP_072768.1| polypeptide deformylase (def) [Mycoplasma genitalium G-37] Length = 226 Score = 308 bits (788), Expect = 4e-086, Method: Compositional matrix adjust. Identities = 148/215 (68%), Positives = 169/215 (78%) Query: 1 MTKILPVSTISIFRIILILPQINMELLPTKAWLVLDDVKEINEPTKPVQFPLDQASLDCI 60 MTKILP SI RIIL L ++M PTK WLV DD IN+PT+ V FP+D+ CI Sbjct: 11 MTKILPWLFTSIVRIILTLLFLSMTFQPTKTWLVFDDNALINKPTEAVNFPIDEQIETCI 70 Query: 61 AKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHLMDGGVEHKCLLINPKIIN 120 KM+AYVDASY+G A++Y IIPGIGIAANQIGYWKQ+FYIHL D E KCLLINPKII+ Sbjct: 71 KKMIAYVDASYDGKAQEYDIIPGIGIAANQIGYWKQLFYIHLNDLNKEKKCLLINPKIID 130 Query: 121 LSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQKEITITATGLFGMCLQHEF 180 S NK+FL+SGEGCLSV K H+GYVIR EWITI G+DW ++KEITI ATGLFGMCLQHEF Sbjct: 131 QSENKAFLESGEGCLSVKKQHKGYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEF 190 Query: 181 DHLQGRFYYHRINPLNPLFTNKEWKVINPALPSDS 215 DHLQGRF+Y RINPLNP F EWKVINP L + + Sbjct: 191 DHLQGRFFYQRINPLNPWFKKPEWKVINPTLKTSN 225 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507985|ref|NP_109934.1| membrane-associated guanylate kinase homologue [Mycoplasma pneumoniae M129] (239 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072769.1| guanylate kinase (gmk) [Mycoplasma genitalium G... 289 2e-080 >ref|NP_072769.1| guanylate kinase (gmk) [Mycoplasma genitalium G-37] Length = 189 Score = 289 bits (739), Expect = 2e-080, Method: Compositional matrix adjust. Identities = 141/188 (75%), Positives = 163/188 (86%) Query: 51 MVDTGRIFVITGPSGVGKSSLVRCLIDHFKDKLRYSISATTRKMRNSETEGVDYFFKDKA 110 M + GRIFVITGPSGVGKS+LV+ L+DHFK++L YSISATTRK R SE EG+DYFFKDK Sbjct: 1 MNNQGRIFVITGPSGVGKSTLVKALLDHFKEQLFYSISATTRKKRISEKEGIDYFFKDKD 60 Query: 111 EFEKLIAADAFVEWAMYNDNYYGTLKSQAEQIIHNGGNLVLEIEYQGALQVKQKYPNDVV 170 EFE LI DAF+EWA YN++YYGTLKSQAEQ I +G NL+LEIEYQGALQVK KYP++VV Sbjct: 61 EFENLIKQDAFIEWACYNNHYYGTLKSQAEQAIKSGINLMLEIEYQGALQVKSKYPHNVV 120 Query: 171 LIFIKPPSMEELLVRLKKRNDEDAITIQNRLKQAEKECQQIGHFKYVVTNNEFDKTLAEL 230 LIFIKPPSM+ELL RLKKRNDED TI+ RL+QA+ E QQI +FKYVVTN EFDKTL EL Sbjct: 121 LIFIKPPSMQELLKRLKKRNDEDETTIKKRLEQAKIEFQQIDNFKYVVTNKEFDKTLNEL 180 Query: 231 QAILLAEF 238 ++ILL+EF Sbjct: 181 KSILLSEF 188 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507986|ref|NP_109935.1| protein phoshatase 2C homolog; similar to Swiss-Prot Accession Number P35182, from S. cerevisiae [Mycoplasma pneumoniae M129] (259 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072770.1| protein phosphatase, putative [Mycoplasma genit... 285 3e-079 >ref|NP_072770.1| protein phosphatase, putative [Mycoplasma genitalium G-37] Length = 260 Score = 285 bits (729), Expect = 3e-079, Method: Compositional matrix adjust. Identities = 140/258 (54%), Positives = 189/258 (73%), Gaps = 1/258 (0%) Query: 1 MDSTNQNLFASLSKKGPVRKENQDFSVVTFNRFGQLMSLVCDGLGGYKGGKMASALVSEV 60 M + N + F LSKKGPVRKENQDF +FN+ L+ +VCDGLGGYKGGK+AS LV ++ Sbjct: 1 MQAANDHFFTGLSKKGPVRKENQDFYGFSFNQ-NNLLIVVCDGLGGYKGGKIASNLVGKL 59 Query: 61 FTKSFTVFDFHSQTERAVKQWFEITLIEARRTLEQYFQTIKRNQVQFARMATTLVLSIIS 120 F F F+F+ E VK+WFE TLI+AR LE FQT+ Q+QFARMA+TLVL I++ Sbjct: 60 FLSLFEGFEFNQWDETTVKKWFENTLIQARFQLENCFQTVYEAQIQFARMASTLVLGILT 119 Query: 121 KQNIWTFWVGDSRAYLINSYQSLQITEDHNLYNQLLQMHATPDVIASYKDKLLALTATVS 180 K +I+ FW+GDSRAYL+ Q+ +T+DHNLYNQL+ M+A ++ SY ++LLALT T+S Sbjct: 120 KSDIYIFWIGDSRAYLLFENQAKLVTKDHNLYNQLVAMNADEKLLLSYSNQLLALTNTIS 179 Query: 181 KDQERQLKYSFRCDVVNAWDFLLLCSDGLYNFLDPNCFYEVITSAPNLKKAVTQLAKLSL 240 K+ +R L Y F + +FLLLCSDGLYNF++ F+E+IT++ NLK+AV L + S+ Sbjct: 180 KETKRPLVYGFYNTKIEQQEFLLLCSDGLYNFVEKELFFEIITNSKNLKQAVFNLYRKSI 239 Query: 241 DNASNDNITLNLINLKQW 258 +NASNDNIT L+NL++W Sbjct: 240 ENASNDNITAALVNLQKW 257 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507987|ref|NP_109936.1| Ser/Thr/Tyr protein kinase [Mycoplasma pneumoniae M129] (389 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072771.1| serine/threonine protein kinase, putative [Myco... 521 e-150 >ref|NP_072771.1| serine/threonine protein kinase, putative [Mycoplasma genitalium G-37] Length = 362 Score = 521 bits (1341), Expect = e-150, Method: Compositional matrix adjust. Identities = 242/333 (72%), Positives = 287/333 (86%) Query: 26 MNSYLFLASNLHVQEFGPLQKRQFTRLVLKVVQRTDKINDNNWKKFLDGTITTTRVSHKN 85 M+SYLFLA NL+++ +GP+QK+Q+ LVLKVVQ+ KIN+NNWKKFLD +TTTRV H N Sbjct: 1 MDSYLFLAKNLNLKNYGPVQKKQYGHLVLKVVQKNPKINENNWKKFLDEMVTTTRVHHSN 60 Query: 86 LVQTFDVVSPRLSVLSENQVIVLEDTVMIVMEYVDGPSLREMLNQKGYFSVQEVVYYFTK 145 LV++FDVV+P L ++ N+ I L VMI MEYVDGPSLR++LN+KGYFSV EVVYYFTK Sbjct: 61 LVKSFDVVNPFLKIVRGNKTIALNQIVMIAMEYVDGPSLRQLLNRKGYFSVSEVVYYFTK 120 Query: 146 LVKVINYLHSFEHQIIHRDLKPENILFTSNLTDIKLLDFGIASAVIRNAEKTEVLTDENS 205 +VK I+YLHSF+HQIIHRDLKPENILFTS+LTDIKLLDFGIAS V++ AEKTEVLTDENS Sbjct: 121 IVKAIDYLHSFKHQIIHRDLKPENILFTSDLTDIKLLDFGIASTVVKVAEKTEVLTDENS 180 Query: 206 LFGTVSYMTPEVLESTVNKEGKRIRKPPTVQYDIYSLGVILFEMLVGRVPFNKSIDPKKE 265 LFGTVSYM P+VLESTVNK GK++RKPP QYDIYSLG+ILFEMLVGRVPFNKSI+P KE Sbjct: 181 LFGTVSYMIPDVLESTVNKAGKKVRKPPNAQYDIYSLGIILFEMLVGRVPFNKSINPNKE 240 Query: 266 RETIQKARNFDVPLMGNLRSDVPVSLENIVFKCTAVKRENSKWMYSDTKQLLADLAQWQT 325 RETIQKARNFD+PLM RSD+P SLENI F+CTAVKREN+KW+YS TK+LL DLA W+ Sbjct: 241 RETIQKARNFDLPLMQATRSDIPNSLENIAFRCTAVKRENNKWLYSSTKELLEDLANWEN 300 Query: 326 EQTLIKPVHERILEGQNEMRELMVSNYLPWYLR 358 EQ +IKP +ER+LEGQ E+RE+M+ L WY + Sbjct: 301 EQAMIKPANERVLEGQVEIREMMLEKPLAWYFK 333 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507988|ref|NP_109937.1| conserved hypothetical protein, 154-190 similar to GTP/ATP binding proteins [Mycoplasma pneumoniae M129] (278 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072772.1| hypothetical protein MG110 [Mycoplasma genitali... 327 6e-092 >ref|NP_072772.1| hypothetical protein MG110 [Mycoplasma genitalium G-37] Length = 278 Score = 327 bits (839), Expect = 6e-092, Method: Compositional matrix adjust. Identities = 156/272 (57%), Positives = 189/272 (69%) Query: 7 GIVFQRFGKQFKVFVENQTLVAFAQKKLQWKRDFKLLVGDKVTLENGVIVAVEERKNTLV 66 GIV Q KQ KVF NQ + AF QKKLQWK DFKL+VGD+V LE+G I V RKN L Sbjct: 7 GIVLQSLAKQCKVFWNNQIITAFPQKKLQWKNDFKLMVGDRVQLEDGAITKVLARKNELT 66 Query: 67 RPKXXXXXXXXXXQSLIEPKINWQQLFKLLIHFHAQNVARLVLVITKNDLEFEPAEKARL 126 RP+ QSL++PKINW QL KLL++F+A+ + + ++ITK DL+F+P EK +L Sbjct: 67 RPRVANVDQIVLIQSLVQPKINWIQLLKLLVYFNAKLIDEIPILITKTDLDFDPMEKQKL 126 Query: 127 SELTSFGYQLFFTAPNADLPLTLFTELQNRFSVFMGQSGVGKSSLINRLDSQIHQAIQAL 186 +L F YQLFF + N LP L + SVF GQSGVGKSSLINRLD + Q IQAL Sbjct: 127 IDLKQFNYQLFFVSKNEPLPSELIDIFSKKLSVFTGQSGVGKSSLINRLDPSLKQKIQAL 186 Query: 187 SAHQFGKNTTTSTVMFPFQNGFICDTPGFNVIDFPNLKQLAAQHFVGFASLIGQCHFSNC 246 S ++FGKNTTT T +F F+ GFICDTPGFNVI NLK LAAQHFVGF +I +CHFSNC Sbjct: 187 SVNKFGKNTTTKTTLFSFRGGFICDTPGFNVISIKNLKILAAQHFVGFQKMISKCHFSNC 246 Query: 247 THQSEKGCFIVSAVTQKSYSLWLYESYLKLIN 278 HQ EK CF+ ++V + Y WLYE Y K+IN Sbjct: 247 YHQYEKDCFVTTSVMKNRYPSWLYEKYRKMIN 278 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507989|ref|NP_109938.1| Glucose-6-phosphate isomerase [Mycoplasma pneumoniae M129] (430 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072773.1| glucose-6-phosphate isomerase (pgi) [Mycoplasma... 635 0.0 >ref|NP_072773.1| glucose-6-phosphate isomerase (pgi) [Mycoplasma genitalium G-37] Length = 433 Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 298/427 (69%), Positives = 355/427 (83%) Query: 1 MESKWLTVDTKHLYGFDEAIFIQKYQKKVNQIHQQFLNQQLPDGHMNGWYSQPDQDHKGL 60 M K LT+D H+YGFD+ I +KYQKKV+QIHQ FL +L DGHM GWY QPDQ+H+ L Sbjct: 3 MSDKLLTIDLSHVYGFDKEIIFKKYQKKVDQIHQDFLAHKLADGHMTGWYDQPDQNHQFL 62 Query: 61 LKQINTIAKQFNALKVTDIVYLGIGGSYTGIRAILDFLKPEQKANIKVHFVPDISAFNIA 120 LK IN I K+F +LKVTDIVY+GIGGS+TGI+ +LDFLKP+Q+ +K+HFVPD+SAF A Sbjct: 63 LKTINQIDKKFKSLKVTDIVYVGIGGSFTGIKTVLDFLKPKQRTGLKIHFVPDLSAFQAA 122 Query: 121 AVARAIKGKSWALVVTSKSGRTLEPAVTFRYFRNLLHKQYKQKHALRTVVITDAVKGLLV 180 +V + IK KSWAL+ TSKSGRTLEPA+ FR FRNLL+K+Y KH R VVITD KGLL Sbjct: 123 SVIKEIKNKSWALITTSKSGRTLEPALNFRIFRNLLNKRYGNKHYQRVVVITDEKKGLLT 182 Query: 181 GMSNQYGYAHLTIPSNIGGRFSTLSPAGLLLAKLCGHDPKQLLLGTLTAKQELANSDLNT 240 M++ +GY L I SNIGGRFSTLSPAGLLLAKL GHDPK +L GTL AK++L + L Sbjct: 183 KMASNHGYQKLVIDSNIGGRFSTLSPAGLLLAKLFGHDPKAILKGTLQAKKDLQTTSLEN 242 Query: 241 NSAYYYAALRHWLYTTKKLKIEVTVAYHSAYEYLLLQHRQLFGESEGKGGKSLFPTFSLF 300 NSAY YA +RHWLYTTKK KIEV +AYHS YEYLLLQHRQLFGESEGK KSLFPTFS+F Sbjct: 243 NSAYLYAVVRHWLYTTKKFKIEVCIAYHSLYEYLLLQHRQLFGESEGKNDKSLFPTFSIF 302 Query: 301 TTDLHSMGQLYQEGEKNFFETVIQVQTQFHDLELPPSDFNNDDQLDYLLAKSMNEISNTA 360 T DLHSMGQLYQEGEK FFETVI V+ ++ LPPSDF+NDD+LD+LL KS+NEIS+ A Sbjct: 303 TVDLHSMGQLYQEGEKVFFETVIDVKNPLVNINLPPSDFDNDDELDFLLDKSLNEISDVA 362 Query: 361 LEAVVEAHFQSNVNIIKLTLKERTTFMFGYFYFWLSMATMMSGSLLGHNVFDQPGVEVYK 420 +++V++AH+Q+NV+IIKLTLKE++ FMFGYFYFWLS+AT+MSGSLLGHNVF+QPGVEVYK Sbjct: 363 IDSVIKAHYQANVSIIKLTLKEQSAFMFGYFYFWLSVATVMSGSLLGHNVFNQPGVEVYK 422 Query: 421 QLMFAKL 427 +LMF KL Sbjct: 423 KLMFEKL 429 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507990|ref|NP_109939.1| D-ribulose-5-phosphate 3 epimerase [Mycoplasma pneumoniae M129] (215 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072774.1| D-ribulose-5-phosphate 3-epimerase, putative [M... 270 8e-075 >ref|NP_072774.1| D-ribulose-5-phosphate 3-epimerase, putative [Mycoplasma genitalium G-37] Length = 209 Score = 270 bits (690), Expect = 8e-075, Method: Compositional matrix adjust. Identities = 137/208 (65%), Positives = 162/208 (77%), Gaps = 6/208 (2%) Query: 9 EIAFSLLPLLHQFDRKLLEQFFADGLRLIHYDVMDHFVDNTVFQGEHLDELQQIGFQVNV 68 ++ FSLLPLL++FD+ LLE +F DGLRLIHYDVMD FV NT F+GE+LDEL+ IGF VNV Sbjct: 4 KVVFSLLPLLNRFDKSLLESYFQDGLRLIHYDVMDQFVHNTAFKGEYLDELKTIGFDVNV 63 Query: 69 HLMVQALEQILP---VYLHHQAVKRISFHVEPFDIPTIKHFIAQIKQAGKQVGLAFKFTT 125 HLMV EQI+P YL VKRISFHVEPF IK I +K+ GK+VGLAFKFTT Sbjct: 64 HLMV---EQIIPQINFYLSQPNVKRISFHVEPFSFAKIKELIQLVKENGKEVGLAFKFTT 120 Query: 126 PLVNYERLVQQLDFVTLMSVPPGKGGQAFNSAVFNNLKQAHKYHCSIEIDGGIKLDNIHQ 185 L Y+ +DF+TLMSVPPGKGGQAFN AVF NLK A+ Y+ IEIDGGIK++NI Q Sbjct: 121 NLQLYQPFFTTIDFITLMSVPPGKGGQAFNEAVFTNLKIANHYNLKIEIDGGIKVNNIDQ 180 Query: 186 IQDDVNFIVMGSGFIKLERWQRQQLLKT 213 I+ V+FIVMGSGFIKLE+WQRQ+LL+T Sbjct: 181 IKAFVDFIVMGSGFIKLEQWQRQKLLQT 208 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507991|ref|NP_109940.1| asparaginyl-tRNA synthetase [Mycoplasma pneumoniae M129] (455 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072775.1| asparaginyl-tRNA synthetase (asnS) [Mycoplasma ... 692 0.0 ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycoplasma genita... 73 5e-015 >ref|NP_072775.1| asparaginyl-tRNA synthetase (asnS) [Mycoplasma genitalium G-37] Length = 456 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/456 (69%), Positives = 389/456 (85%), Gaps = 1/456 (0%) Query: 1 MSATAISDLFEKPAQFKNKKIKLTGWLKNKRTSANIIFLEVNDGSTLLNLQAVVKQ-DQP 59 M + + L + P +F NK+IKL+GW+KNKR SANIIFL ++DGS++ LQAVVKQ D P Sbjct: 1 MKSVTVKQLLQTPRKFNNKQIKLSGWVKNKRASANIIFLAISDGSSINTLQAVVKQEDNP 60 Query: 60 ELFALAESISLASAVSVSGTVALTPKSKQPLELVVKQINVLSTARADYPLQKKEHSLEFF 119 ++F+L ++++LASAV V G + LTPK+KQPLEL +KQ+++L+ A +DYPLQKKEHS EFF Sbjct: 61 QVFSLLQTVNLASAVMVWGEIILTPKAKQPLELKLKQVSLLAQAESDYPLQKKEHSQEFF 120 Query: 120 RNNAYLRVRARTYFAIMKVRSLLSQAIFDYFFKNDFVLVHSPILTSNDCEGAGETFELKQ 179 R+NA+LRVRA+TYFA+MK+RS+LS AIF+YFFKNDF+LV SPILTSNDCEGAGETF +K Sbjct: 121 RSNAHLRVRAKTYFAVMKIRSVLSHAIFEYFFKNDFILVQSPILTSNDCEGAGETFVIKD 180 Query: 180 GKEFFNKTTYLTVSGQFGAECYAQAFKKVFTFGPTFRAEKSHTSRHLSEFWMIEPEVAFA 239 + FFNKTT+LTVSGQFGAE +AQAFKKVFTFGPTFRAEKSHT+RHLSEFWMIEPE+AFA Sbjct: 181 SETFFNKTTFLTVSGQFGAEAFAQAFKKVFTFGPTFRAEKSHTNRHLSEFWMIEPEIAFA 240 Query: 240 NLKDLIKLIESTVKTVIKQVMQKAKQELDFLEKQFDVKLMERLKQITSTKNFHVLEYTKA 299 NLKDL++LI++ +K +IK+VM+ A EL+ L KQF ++ LK I STK F ++EY+KA Sbjct: 241 NLKDLMQLIQNLIKFLIKKVMENASDELNVLAKQFSNDIISNLKTIISTKKFPIIEYSKA 300 Query: 300 LEILKTAQASGQANFEVQDFNFGLDLKTEHERFLCEQHFHNQPVFVINYPKDFKAFYMKQ 359 L ILK + + + NFE+ DF+FG+DLKTEHERFLCEQ+F NQP+FVINYPK+ KAFYMK Sbjct: 301 LAILKESSDTKKTNFELNDFSFGIDLKTEHERFLCEQYFQNQPLFVINYPKELKAFYMKT 360 Query: 360 NADGRTVGAVDLLFPQIGEICGGSEREGNLEKLVERCQAMQIDTQTLNWYLDMRKWGYFA 419 N D +TV AVDLL P+IGEICGGSERE +L +L RCQ++ IDT++LNWYLDMRKWGYFA Sbjct: 361 NTDNKTVAAVDLLLPKIGEICGGSERESDLNQLKNRCQSLNIDTKSLNWYLDMRKWGYFA 420 Query: 420 SAGFGLGFDRLLAYICGLENIRDAIPFPRAHGSINY 455 SAGFGLGFDRLLAYICGLENIRDAIPFPR HG+IN+ Sbjct: 421 SAGFGLGFDRLLAYICGLENIRDAIPFPRVHGTINF 456 >ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycoplasma genitalium G-37] Length = 490 Score = 73.2 bits (178), Expect = 5e-015, Method: Compositional matrix adjust. Identities = 108/457 (23%), Positives = 196/457 (42%), Gaps = 34/457 (7%) Query: 10 FEKPAQFKNKKIKLTGWLKNKRTSANIIFLEVNDGSTLLNLQAVVKQDQPELFA-LAESI 68 FEK ++ + KK K T L + + FL + D + L + K+ P+LF E + Sbjct: 45 FEKCSEEELKK-KATVSLAGRIIAIRQTFLIIQDFDGQVQL-YINKKIHPKLFDYFNEFV 102 Query: 69 SLASAVSVSGTVALTPKSKQPLELVVKQINVLSTARADYPLQKKEHSLEFFRNNAYLRVR 128 + + VSG LT + L L V+++ +++ P +K H L A R Sbjct: 103 DIGDQIVVSGKPMLT--KTKVLTLAVEEMKIIAKCLLVPP--EKWHGLTDIETRARKRFL 158 Query: 129 ARTYFAIMK----VRSLLSQAIFDYFFKNDFVLVHSPILTSNDCEGAGETFELKQGKEFF 184 TY M+ R+ + ++I + +N F+ V +P L + G K Sbjct: 159 DLTYNLAMRDVFLKRTKIIKSIRSFLDQNGFIEVETPTLQA--VLGGANAKPFKTHYNAL 216 Query: 185 NKTTYLTVSGQFG-AECYAQAFKKVFTFGPTFRAEKSHTSRHLSEFWMIEPEVAFANLKD 243 YL ++ + + F KV+ G FR E T+ H EF IE A+A+ + Sbjct: 217 KADFYLRIANEIALKKLIIGGFNKVYEMGKMFRNEGVDTT-HNPEFTSIEIYQAYADFEV 275 Query: 244 LIKLIESTVKTVIKQVMQKA----KQELDFLEKQFDVKLMERLKQITSTKNFHVLEYTKA 299 ++ L+E ++++ + + Q + + ++ + ++E +K++T +F+ ++ ++ Sbjct: 276 MLVLVEKLIQSLCESLNQFSFNWNNKTINLKTPFHKITMVELIKKVTGI-DFNSVKDDQS 334 Query: 300 LEILKTAQASGQANFEVQDFNFGLDLKTEHERFLCEQHFHNQPVFVINYPKDFKAFYMKQ 359 +L A + Q+ ++L E CEQ +P FV +YPK KQ Sbjct: 335 AILLAEKHHVKLAKHQ-QNKQHIINLFFEQ---FCEQTLI-EPTFVTHYPKAVSPL-AKQ 388 Query: 360 NADGRTVGAVDLLFPQIGEICGGS-------EREGNLEKLVERCQAMQIDTQTLN-WYLD 411 + LF EI E+ E+ +E Q +T L+ +L+ Sbjct: 389 DPSNPEFTQRFELFINGKEIANAYSELNDPLEQRKRFEQQLEEKQLGNDETSELDESFLE 448 Query: 412 MRKWGYFASAGFGLGFDRLLAYICGLENIRDAIPFPR 448 +G +AG G+G DRL+ +C +IRD + FP+ Sbjct: 449 ALSFGMVNTAGLGIGIDRLVMLLCECNSIRDVVFFPQ 485 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507992|ref|NP_109941.1| phosphatidylglycerophosphate synthase [Mycoplasma pneumoniae M129] (227 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072776.1| phosphatidylglycerophosphate synthase (pgsA) [M... 248 4e-068 >ref|NP_072776.1| phosphatidylglycerophosphate synthase (pgsA) [Mycoplasma genitalium G-37] Length = 236 Score = 248 bits (633), Expect = 4e-068, Method: Compositional matrix adjust. Identities = 129/224 (57%), Positives = 159/224 (70%), Gaps = 3/224 (1%) Query: 1 MRSPFPVPMVPLTIK--TWQKKLPNWLTIYRIFIAVPTIIFLGLNHLLGSVASFTVLGNV 58 M PFPV M PLT K ++KK+ NWLT+YRIFIA+PTIIF+ L++ LG +A+F+V G + Sbjct: 8 MLFPFPVYMAPLTSKFAAYKKKIANWLTVYRIFIALPTIIFIALDNQLGVLANFSV-GAI 66 Query: 59 TIHLQVSLFIGGVLFITAVISDYLDGYWARKWRVVSNFGKLWDPLADKVIINGVLIALVA 118 +I LQ+SL IGG LF+TAVISDYLDGY ARKW VSNFGKLWDP+ADKVIINGVLIAL Sbjct: 67 SISLQISLLIGGFLFLTAVISDYLDGYLARKWLAVSNFGKLWDPIADKVIINGVLIALAI 126 Query: 119 YGYFHFSFXXXXXXXXXXXXXXXFYAQEKQLIIPANQWGKWKTTWQMIAILMSCFVFSFS 178 GYFHFS YA EK+++I AN GKWKT QM+ I+ SCFV+SF Sbjct: 127 NGYFHFSLLIVFIVRDLVLDGMRIYAYEKKVVIAANWLGKWKTIMQMVGIVFSCFVWSFK 186 Query: 179 LKETNSANTKIFYWAIVHLPYYLATAFSLVSFGIYAQQIYKTIK 222 E S N+ +F+W + LPYYLA FS+ SF +Y QIY+ +K Sbjct: 187 QSEIASLNSGLFFWLLTQLPYYLAAVFSIWSFIVYNIQIYQQLK 230 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507993|ref|NP_109942.1| hypothetical protein MPN254 [Mycoplasma pneumoniae M129] (157 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072777.1| hypothetical protein MG115 [Mycoplasma genitali... 177 4e-047 >ref|NP_072777.1| hypothetical protein MG115 [Mycoplasma genitalium G-37] Length = 157 Score = 177 bits (449), Expect = 4e-047, Method: Compositional matrix adjust. Identities = 80/157 (50%), Positives = 117/157 (74%) Query: 1 MYARLIAEKLLNHKLTIATAESVTGGXXXXXXTDIAGASRFFKGAIVAYSNELKKSLLNV 60 M+A LIAEKL +L++ATAESVTGG T I GAS +F G ++AY+N++K +LLNV Sbjct: 1 MFANLIAEKLQKLQLSVATAESVTGGLLAHCLTSIDGASNYFNGGVIAYNNQVKINLLNV 60 Query: 61 KQSTLINHGAVSRYCVREMALGLMQKLNVDIAVACSGVAGPDALENQAVGSLFFCVIVAN 120 + ST+ NHGAVS +C REMA+G+ QK D+ +ACSG+AG A+EN+A+G LFFC+I+ N Sbjct: 61 QSSTIANHGAVSSFCAREMAVGVKQKFQADVGIACSGIAGSKAVENKAIGLLFFCIIIGN 120 Query: 121 KAYDFETKLPAGSRNELRQLFVQKILQTVEHILSEIS 157 KAYDFE ++ +R + +LF KIL++ ++L++++ Sbjct: 121 KAYDFEFEMNQNNRKDNIELFTNKILESFHYLLTKLA 157 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507994|ref|NP_109943.1| hypothetical protein MPN255 [Mycoplasma pneumoniae M129] (251 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072778.1| hypothetical protein MG116 [Mycoplasma genitali... 306 1e-085 >ref|NP_072778.1| hypothetical protein MG116 [Mycoplasma genitalium G-37] Length = 251 Score = 306 bits (784), Expect = 1e-085, Method: Compositional matrix adjust. Identities = 143/251 (56%), Positives = 193/251 (76%) Query: 1 MQRTLNVGVILCESFISNAQNPVNSYIKIYENVRMFEFAIKLLQESRINFQKILLYVLEE 60 M+RTLN+G++LCE+F+S+ QN V+SY ++YE+VRMFEF +KL Q N Q+ L++ E Sbjct: 1 MKRTLNIGIVLCENFLSDQQNAVDSYTQVYEDVRMFEFGLKLFQSLPFNIQETLIFCNAE 60 Query: 61 QIPLVEKVVAKYENCWVFRSKHNEVEDIYEAKGFIEDKYKIGLKSSKNQASSYYDNCCFV 120 Q +V+K KY+N VF S+ +V ++YEAK FI++KYK+ K SSYYD+CCF+ Sbjct: 61 QHKIVDKAAKKYKNTTVFFSRDTDVANVYEAKVFIQEKYKLTQDYKKRGVSSYYDSCCFI 120 Query: 121 VLEACRPLTSKKVVKNVYEKAMIDGAAVAVLPFERQLVCGDNTKAVRQLKDKGNMNYWRQ 180 ++EA RPLT+ K VK+VYEKA+I+ AA+AVLP+ L+ G+N L+DK NYW+Q Sbjct: 121 LIEANRPLTAIKTVKSVYEKALIEKAAIAVLPYNGTLMNGNNDVVFSHLQDKNRFNYWKQ 180 Query: 181 SSTWELQFPQAYTLNKLNQYHKNLFMKARNMLDLMNISAKNPLSIVDGSAYSFRVVTSLD 240 S +E+Q+PQAYTLNKLNQ+ K F++AR+MLDLM IS K+PLSIVDGSAY+FRVVT+LD Sbjct: 181 SKAYEVQYPQAYTLNKLNQFSKQQFLRARSMLDLMKISNKSPLSIVDGSAYAFRVVTNLD 240 Query: 241 FEILLGILRNG 251 FEILLGIL+NG Sbjct: 241 FEILLGILKNG 251 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507995|ref|NP_109944.1| hypothetical protein MPN256 [Mycoplasma pneumoniae M129] (223 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072779.1| hypothetical protein MG117 [Mycoplasma genitali... 164 5e-043 >ref|NP_072779.1| hypothetical protein MG117 [Mycoplasma genitalium G-37] Length = 214 Score = 164 bits (416), Expect = 5e-043, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 146/224 (65%), Gaps = 11/224 (4%) Query: 1 MDRKIVQLIHNFSGTEKLKAAVFSHDEQCFFDFVSFDELNSKLTGFLLFDSLEKLFKLVE 60 MD+ I QL+ +F+ T+ ++A S D+ DFVSF+ ++ LTGFL+F++ KL +L+E Sbjct: 1 MDKNIFQLVQSFAKTQNVRANYTSQDKNISLDFVSFETVSQSLTGFLIFNNFNKLLQLIE 60 Query: 61 TIQQKRSWLYVDELWLINTATENQQLNEVSVWLVKKELAQVGVLTQLDTSLVKLLMASKN 120 I+QK++WLYVD+LW+++ + N+ L + +VW++K+E V V + L ++ S Sbjct: 61 LIKQKQTWLYVDQLWIVDLSN-NKALTDATVWIIKQEKLPVSVAAFSNQQLNQVYRNS-- 117 Query: 121 TDSALYNTYIKPVELQQ-FTQTPAPDNVNAEQSHLTLESTTDLNNSQLANTPALWEVEQT 179 + S LY +Y+KP+E+QQ FT +P+ +N + ES D NN L++ ++ Sbjct: 118 STSPLYLSYVKPIEVQQFFTLSPSINNNPFLNQNPLTESPFDNNNQ-------LFQATKS 170 Query: 180 TQELLPTMDFSKFIDELDQITKNFSDLELEPLSFNEGFDEWNQE 223 + + TM+FS+F+DE DQITKNFSD+ELEP+ F + FD+W+++ Sbjct: 171 VEPSMETMEFSRFMDEFDQITKNFSDIELEPMQFTQSFDDWSKD 214 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507996|ref|NP_109945.1| UDP-glucose 4-epimerase [Mycoplasma pneumoniae M129] (338 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072780.1| UDP-glucose 4-epimerase (galE) [Mycoplasma geni... 392 e-111 >ref|NP_072780.1| UDP-glucose 4-epimerase (galE) [Mycoplasma genitalium G-37] Length = 340 Score = 392 bits (1006), Expect = e-111, Method: Compositional matrix adjust. Identities = 184/337 (54%), Positives = 248/337 (73%), Gaps = 1/337 (0%) Query: 1 MSETKSKVLVLGGLGYIGSCFIDQLLKQYPDVTVSVIDINHTSLALQLLPR-QVNVHFVN 59 M K++V ++GG+GYIGSCF + +Q + V+VID N + ++LL + + +F + Sbjct: 1 MIGAKTRVAIVGGIGYIGSCFASFIKEQNDKLIVTVIDNNKNNHVIKLLKKIGIEFYFAD 60 Query: 60 LLDRAQLTDTIAQINPDVVFHFAAKTSVKESTEQPLTYFDHNLVGTLNLLHALKELQKPI 119 LLDR +LT+ IA I PDVVFHFAAKTSV ES PL YFD N++GTLNL+ A+ LQKPI Sbjct: 61 LLDRHKLTEVIAAIQPDVVFHFAAKTSVSESVHNPLKYFDCNVIGTLNLISAISNLQKPI 120 Query: 120 QLFFSSTAAVFGSASTLPIPENLVLEETLASNPYGISKFLSEIVLQTLTRSPHFQVIALR 179 +LFF+S+AAV+G + I E +V+ ET A+NPYG+SKFL E++L + ++ QV+ LR Sbjct: 121 KLFFASSAAVYGQTTNSYISEEIVITETQATNPYGLSKFLDELILNAVAKNSQLQVVCLR 180 Query: 180 YFNVAGASNPFGNFNKNTTLLIPNLIKAFMEKRTFFLYGDDYDTKDGSCIRDYIHVVDLC 239 +FNVAGA PFGNFN NTTLLIPNL+KAF+++ FFLYG+DY TKDGSCIRDYIHV D+C Sbjct: 181 FFNVAGAILPFGNFNGNTTLLIPNLVKAFLKQTPFFLYGNDYATKDGSCIRDYIHVYDIC 240 Query: 240 DAHLLAWKWLQANPKVRFESFNLGSGQGFSNWEVINTAQAIFAPEQLQLKIESRRAGDPP 299 +AH L WKWL + +++FE+FNLGSG G SN EVI+ A+ +F P +L L+I +R+ DP Sbjct: 241 NAHFLLWKWLNDHRQIKFETFNLGSGIGTSNLEVIDIAKKVFYPSRLNLEIRPKRSWDPA 300 Query: 300 VLVVDCTKAKRLLNFQPTRSLHKMLSDETIFYRDFYN 336 +LV + KAK+ F+ TR+L M+SDE FY +FYN Sbjct: 301 ILVANVAKAKQTFQFKITRNLKDMISDERNFYENFYN 337 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507997|ref|NP_109946.1| sugar (ribose/galactose) ABC transporter ATP-binding subunit [Mycoplasma pneumoniae M129] (572 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072781.1| galactoside ABC transporter, ATP-binding protei... 821 0.0 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 84 3e-018 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 84 4e-018 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 76 1e-015 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 69 1e-013 ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasm... 67 6e-013 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 63 9e-012 >ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length = 564 Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/572 (70%), Positives = 480/572 (83%), Gaps = 8/572 (1%) Query: 1 MSKIAFRMENICKSFDNGRVKANVDVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPD 60 M K+AF+ME+I KSFDNG++KANVDV+L VYENTVHT+LGENGAGKSTLTSILFGLY+PD Sbjct: 1 MEKVAFKMEHISKSFDNGKIKANVDVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPD 60 Query: 61 SGKIFIGEEEVHFKSSKDAVQHKIGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKL 120 SGKIFIGE++V+FKSSKDAV+HKIGMVHQHFKL++NYTVLDNIILGNES F Sbjct: 61 SGKIFIGEKQVNFKSSKDAVKHKIGMVHQHFKLIENYTVLDNIILGNESRFGF------- 113 Query: 121 KLPLLHRKASEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEP 180 LPL++RK SEAKI+ +ME+Y + V+L QKVS LTVGQQQRVEILKVLFRDS+ILIFDEP Sbjct: 114 -LPLINRKVSEAKIKTIMEKYGIFVDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEP 172 Query: 181 TAVLSDQEIKSFLNIIKNFKKMGKTIVLISHKLNEIKEVAETATILRQGHSVGTFQIKDT 240 TAVLSD EI++FL II NFKK+GKTIVLISHKLNEIK+VA+TAT+LR G VG+F +K T Sbjct: 173 TAVLSDLEIQNFLKIIANFKKLGKTIVLISHKLNEIKQVADTATVLRLGKVVGSFDVKTT 232 Query: 241 SIDEMARLMMGKELKETKNNTQFTAKGEPVLKVENLHLYLNQNWFYKLIARWNQKRINQL 300 +D++A LMMGKELK+TKN T F AK EPVLKV+NL+L+LN++ YK + R N Q Sbjct: 233 PVDKIALLMMGKELKQTKNTTDFVAKDEPVLKVQNLNLFLNKSLAYKFLVRCNNIHKAQQ 292 Query: 301 QKQGKPAKTLWLKSWLEGLAAIEKTPRFIRGIVNNLGFGSQQVFDKGISFEIHKGEIFAI 360 K+ KP K LW+ S+L L KTP+ ++G++N LG Q+ D+ ISF IHKGEIFAI Sbjct: 293 IKKNKPLKDLWIISFLNKLTTSNKTPKLVKGLINKLGLSYQENTDETISFAIHKGEIFAI 352 Query: 361 AGVEGNGQNQLIDLICGLEKAAPKKVFFNGFDISRYSIRKRINAGIGFVLEDRHKYGLIL 420 AGVEGNGQ+QL++LICG+EKAA K+ FN DISR+SIRKRINAGI FVLEDRHKYGLIL Sbjct: 353 AGVEGNGQSQLVNLICGIEKAASNKLIFNNIDISRWSIRKRINAGISFVLEDRHKYGLIL 412 Query: 421 DQTVRFNAVNNQIDRKQFSSWNFLNQMQIAVYTNQIVDKFDVRGAVQGTAIVRLLSGGNQ 480 DQTVRFN VNNQI+ + FSSWNFL M+IA+Y+N I+ KFDVRG+ +G+A+VR LSGGNQ Sbjct: 413 DQTVRFNTVNNQINNRPFSSWNFLKPMEIALYSNTIIKKFDVRGSAEGSAVVRRLSGGNQ 472 Query: 481 QKLIIGRELTKQNELLVFAQVTRGLDVGAISFIHQKILDAKKQNNAILLVSYELDEILAI 540 QKLIIGRE+TKQN+LLV AQVTRGLD+GAI+FIH+ IL AK N AILLVSYELDEILA+ Sbjct: 473 QKLIIGREMTKQNDLLVLAQVTRGLDIGAIAFIHENILLAKANNKAILLVSYELDEILAL 532 Query: 541 ADTIGVINKGNLLEVNKRDVMTRERIGKLIMQ 572 ADT+ VINKG ++ + KRD+M R+ IG+LIMQ Sbjct: 533 ADTVAVINKGRIVGMGKRDLMDRQSIGRLIMQ 564 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 84.3 bits (207), Expect = 3e-018, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 119/239 (49%), Gaps = 38/239 (15%) Query: 25 DVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKIFIGEEEVHFKSSKDAVQHKI 84 +++ +VYE ++G NG+GKST++ +L GL +P +G+I I + V F + +++ I Sbjct: 26 ELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDNV-SYLRNNI 84 Query: 85 GMVHQHFKLVDN----YTVLDNIILGNESSFSIPFTNGKLKLPLLHRKASEAKIQAMMER 140 G++ Q+ DN TV D+I G E ++ S KI+A+++ Sbjct: 85 GIIFQN---PDNQFIGITVEDDIAFGLE-----------------NKCFSRQKIKAIIDE 124 Query: 141 YDLHVN----LHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTAVLSDQEIKSFLNII 196 L + Q+ L+ GQ+QRV I VL + I+IFDE TA+L + K+ + Sbjct: 125 VTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFM 184 Query: 197 KNFKKMGKTIVLISHKLNEIKE-----VAETATILRQGHSVGTFQIKDTSIDEMARLMM 250 K GK ++ I+H + E+ + V +++QG V F TS E+ ++ + Sbjct: 185 VKLAKQGKCVISITHDMEEVTKADKVLVMNEGKLIKQGKPVEVF----TSEQELQKIRL 239 Score = 61.6 bits (148), Expect = 2e-011, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 18/221 (8%) Query: 348 ISFEIHKGEIFAIAGVEGNGQNQLIDLICGLEK--AAPKKVFFNGFDISRYSIRKRINAG 405 +SF +++GE I G G+G++ + L+ GL K A K+F D S R N G Sbjct: 27 LSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDNVSYL-RNNIG 85 Query: 406 IGFVLEDRHKYGLILDQTVRFNAVNNQIDRKQFSSWNFLNQMQIAVYTNQIVDKFDVRGA 465 I F D G+ ++ + F N R++ + ++++ + T+ + + Sbjct: 86 IIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKA--IIDEVTLQTQTDGFIKQEP---- 139 Query: 466 VQGTAIVRLLSGGNQQKLIIGRELTKQNELLVFAQVTRGLDVGAISFIHQKILDAKKQNN 525 LSGG +Q++ I L +++F + T LD A I Q ++ KQ Sbjct: 140 -------HNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGK 192 Query: 526 AILLVSYELDEILAIADTIGVINKGNLLEVNKR-DVMTRER 565 ++ ++++++E+ AD + V+N+G L++ K +V T E+ Sbjct: 193 CVISITHDMEEVTK-ADKVLVMNEGKLIKQGKPVEVFTSEQ 232 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 84.0 bits (206), Expect = 4e-018, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 122/235 (51%), Gaps = 21/235 (8%) Query: 17 NGRVKANVDVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKI-----FIGEEEV 71 N +K D + T +N ++ ++G++G+GKSTL + GL +P+ G I +IG ++ Sbjct: 31 NNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIYIGAKQR 90 Query: 72 HFKSSKDAVQHKIGMVHQ--HFKLVDNYTVLDNIILGNESSFSIPFTNGKLKLPLLHRKA 129 K+ K ++ I +V Q ++L + TV +I+ G P G+ K R+ Sbjct: 91 KIKNFKK-LRKTISIVFQFPEYQLFKD-TVEKDIMFG-------PVALGQSKYD--ARQK 139 Query: 130 SEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTAVLSDQEI 189 + ++ M +Y L + L+ GQ++RV I +L + +ILIFDEPTA L + Sbjct: 140 AAYYLEMMGLKYPF---LERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGE 196 Query: 190 KSFLNIIKNFKKMGKTIVLISHKLNEIKEVAETATILRQGHSVGTFQIKDTSIDE 244 + + +IK K+ +T+ +I+H++ + EVA+ +L +G V + +D+ Sbjct: 197 REMMQLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMDQ 251 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 75.9 bits (185), Expect = 1e-015, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 26/229 (11%) Query: 8 MENICKSFDNG---RVKANVDVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKI 64 + +CK+ NG ++ N +NL + +LG++G+GK++L S++ L +P SG Sbjct: 55 FKEVCKAVTNGINNQLICN-HINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDS 113 Query: 65 FI-GEEEVHFKSSK-DAVQHK-IGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLK 121 F+ G + +K A+++K +G + Q + L+ + V DNI KL Sbjct: 114 FVCGTNTICCSDAKLTALRNKNVGYIFQQYGLLRDLDVDDNI---------------KLA 158 Query: 122 LPLLHRKASEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPT 181 LPL R + + H H+KV +L+ GQQQRV I + L ++ IL DEPT Sbjct: 159 LPLKKRFNNNLEELLERLELKEH--RHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPT 216 Query: 182 AVLSDQEIKSFLNIIKNFKK-MGKTIVLISHKLNEIKEVAETATILRQG 229 ++ K L + + G TIV+++H +I E+A+ + G Sbjct: 217 GAVNIDISKKILQFFVEYNRDKGTTIVIVTHN-EKIVELAKRVIKIHDG 264 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 68.9 bits (167), Expect = 1e-013, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 96/194 (49%), Gaps = 19/194 (9%) Query: 25 DVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKIFIGEEEVHFKSSKDAVQHK- 83 DV+L + + +LG +G+GK+TL +++ G G + + +S+ + ++ Sbjct: 107 DVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLLTYRK 166 Query: 84 --IGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLKLPLLHRKASEAKIQAMMERY 141 +G V+Q + L++ + DNI + L+ + I+ + E+ Sbjct: 167 NNLGYVYQRYNLIELLSAYDNIAISQN---------------LIPKYQRRLDIEELAEKL 211 Query: 142 DLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTAVLSDQEIKSFLNIIKNFKK 201 D+ L++ ++ GQ+QRV I + + ++ +L+ DEPT L ++ +N+++ K Sbjct: 212 DIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINK 271 Query: 202 MGK-TIVLISHKLN 214 K TI++++H ++ Sbjct: 272 TYKQTILMVTHDVS 285 >ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 589 Score = 66.6 bits (161), Expect = 6e-013, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 113/216 (52%), Gaps = 20/216 (9%) Query: 7 RMENICKSFDNGRVKANVDVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKIFI 66 R EN+ ++ + +N +V V ++G GAGKST+ ++L Y+P GKI++ Sbjct: 353 RFENVAFGYNKDK-PTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYM 411 Query: 67 GEEEVHFKSSKDAVQHKIGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLKLPLLH 126 E+ +K A + KI +V Q L T+ +NI LG + + T+ ++ Sbjct: 412 DNFEIS-DVTKKAWREKISIVLQDSFLFSG-TIKENIRLGRQDA-----TDDEIIAACKT 464 Query: 127 RKASEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTA---V 183 A + I + + YD +++ K L+VG++Q + I + + R++ +L+ DE T+ V Sbjct: 465 ANAHDF-IMRLPKGYDTYIS--NKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDV 521 Query: 184 LSDQEIK-SFLNIIKNFKKMGKTIVLISHKLNEIKE 218 S++ I+ S ++KN KT +ISH+L+ I++ Sbjct: 522 HSEKLIQESIGRLMKN-----KTSFIISHRLSIIRD 552 Score = 63.2 bits (152), Expect = 6e-012, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 122/256 (47%), Gaps = 30/256 (11%) Query: 320 AAIEKTPRFIRGIV--NNLGFGSQQVFDK----GISFEIHKGEIFAIAGVEGNGQNQLID 373 A I+K P I+G + N+ FG + DK GI+F + G++ AI G G G++ +I+ Sbjct: 340 ATIDKLPD-IKGNIRFENVAFGYNK--DKPTLTGINFSVKHGDVVAIVGPTGAGKSTIIN 396 Query: 374 LICGLEKAAPKKVFFNGFDISRYSIRKRINAGIGFVLEDRHKYGLILDQTVRF---NAVN 430 L+ K K++ + F+IS + +K I VL+D + + + +R +A + Sbjct: 397 LLMKFYKPFEGKIYMDNFEISDVT-KKAWREKISIVLQDSFLFSGTIKENIRLGRQDATD 455 Query: 431 NQI--DRKQFSSWNFLNQMQIAVYTNQIVDKFDVRGAVQGTAIVRLLSGGNQQKLIIGRE 488 ++I K ++ +F+ ++ Y I +K D LS G +Q L I R Sbjct: 456 DEIIAACKTANAHDFIMRLPKG-YDTYISNKAD------------YLSVGERQLLTIARA 502 Query: 489 LTKQNELLVFAQVTRGLDVGAISFIHQKILDAKKQNNAILLVSYELDEILAIADTIGVIN 548 + + +L+ + T +DV + I + I K N ++S+ L I+ A I VIN Sbjct: 503 VIRNAPVLLLDEATSSVDVHSEKLIQESIGRLMK-NKTSFIISHRL-SIIRDATLIMVIN 560 Query: 549 KGNLLEVNKRDVMTRE 564 G +LE+ D + ++ Sbjct: 561 DGKVLEMGNHDQLMKQ 576 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 62.8 bits (151), Expect = 9e-012, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 26/219 (11%) Query: 25 DVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPD-----SGKIFIGEEEVHFKSSKD- 78 D+NL + N + L+G++G GKST L L + +G I+ + ++ D Sbjct: 101 DINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGIINDL 160 Query: 79 AVQHKIGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLKLPLLHRKASEAKI--QA 136 ++ +GMV Q N+++ +NI G ++ +H K + +I QA Sbjct: 161 TLRTSVGMVFQKLTPF-NFSIFENIAYG-------------IRAHGIHNKNAINEIVRQA 206 Query: 137 MMERY---DLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTAVLSDQEIKSFL 193 ++ ++ NLH+ + L+ GQQQR+ I + + D+L+ DEPT+ L S Sbjct: 207 LISAALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIE 266 Query: 194 NIIKNFKKMGKTIVLISHKLNEIKEVAETATILRQGHSV 232 +I+ K+ TIV+++H + + + + G + Sbjct: 267 LLIQQLKEKF-TIVIVTHSMAQTIRITDETIFFADGRVI 304 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507998|ref|NP_109947.1| sugar (ribose/galactose) ABC transporter permease subunit, but probably C-terminal [Mycoplasma pneumoniae M129] (517 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072782.1| hypothetical protein MG120 [Mycoplasma genitali... 607 e-175 >ref|NP_072782.1| hypothetical protein MG120 [Mycoplasma genitalium G-37] Length = 520 Score = 607 bits (1564), Expect = e-175, Method: Compositional matrix adjust. Identities = 307/510 (60%), Positives = 390/510 (76%), Gaps = 1/510 (0%) Query: 5 NYLKHRFLFSKDKFWYAPFKQKQRRSIYSTFSLIVLSFIVSFFLIVAIPGIKGGTFLEIF 64 +Y KH +F KD+F ++ KQ QRRSI S+ LI+LSF++SF LI++IPG +G +F +F Sbjct: 8 SYFKHHLVFWKDRFLHSSEKQMQRRSILSSVVLIILSFLISFLLIISIPGGRGASFFALF 67 Query: 65 TRLFKDRINIENFARQIAIYTLAALAFSFCMSVGVFNIGISGQMMAGANFGFMMILKVFP 124 T+LF D N ENF RQIAIY LA LAFSFCMSVG+FNIGISGQMMAGA FGF+MILKVFP Sbjct: 68 TKLFLDNTNTENFLRQIAIYILAGLAFSFCMSVGIFNIGISGQMMAGAIFGFLMILKVFP 127 Query: 125 ESFRPAFGGQIITILLMILGSVTVAMVVAALKVFFKVNEVVSAIMLNWVIVLVSAYLVGT 184 SFRP FGGQIIT+LLM++GSV+VA+VVA LK+FFKVNEVVSAIMLNW++VL+SAYLV T Sbjct: 128 SSFRPGFGGQIITVLLMVIGSVSVAVVVATLKIFFKVNEVVSAIMLNWIVVLISAYLVET 187 Query: 185 YIKPEKTDTSQFYSIELPDAFALYNFSDVQQKYGWLTSLVXXXXXXXXXXVLMKFTVFGH 244 YIK T+QF+S+ LPD FALYNFS + +K+GWL SL+ V++K+TVFGH Sbjct: 188 YIKDNSGGTAQFFSLPLPDEFALYNFSPLTKKFGWLASLIIAFISVIIVAVVLKYTVFGH 247 Query: 245 KLKSTGLSVTGSQAAGYSVKKYQFLSFVISGILSGLLAAVVYTASFEKQLTFSDVGDFGI 304 KLKS G SV GSQA G++V+KYQFLSF+ISGILSGLLA VVYTAS EK LTF++VGD I Sbjct: 248 KLKSIGSSVFGSQAMGFNVRKYQFLSFIISGILSGLLATVVYTASTEKVLTFNNVGDSAI 307 Query: 305 TSVPITGFDGIAIGLIALNSPARXXXXXXXXXXXXXGAKPAGLNAATASLVLGIMMYFAA 364 ++VP TGFDGIAIGLIALN+P R GA+PA LN TASLVLGIMMYFAA Sbjct: 308 SAVPATGFDGIAIGLIALNNPFRIVIVSVLIAFVNIGARPANLNPNTASLVLGIMMYFAA 367 Query: 365 IYNLMIYIKPWRMIVKLNISKMNEAAYDEFQNEMAANLETLSFQRFLDKQKRKHDKERMV 424 +YNLM+Y KPWR +VKLNI K+N Y+ ++N++AANLE LSFQRFL KQK+K+DK + Sbjct: 368 LYNLMVYFKPWRYLVKLNIGKINLTTYETYENKLAANLEWLSFQRFLSKQKKKNDKTKFN 427 Query: 425 WFDTKRFEEYQKKKQATLQTFHENSSQNLLQYWKQQLLVADVK-RLTFKWDFLTFKHQQK 483 WFDT FE+Y K KQ +Q +H N + NL+ +W + ++K TFK +F+ FKHQQK Sbjct: 428 WFDTSLFEQYAKNKQEIVQEYHHNCATNLIAWWLNAIQSGNIKPSTTFKLEFVNFKHQQK 487 Query: 484 YILRWYKGKNKKQTALENEFASLNEAISQK 513 ++L W+K +++ +++F +N+ + ++ Sbjct: 488 FVLNWFKNESESLRDFQSQFERINKLVERE 517 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13507999|ref|NP_109948.1| sugar (ribose/galactose) ABC transporter permease subunit [Mycoplasma pneumoniae M129] (311 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072783.1| hypothetical protein MG121 [Mycoplasma genitali... 325 2e-091 >ref|NP_072783.1| hypothetical protein MG121 [Mycoplasma genitalium G-37] Length = 306 Score = 325 bits (834), Expect = 2e-091, Method: Compositional matrix adjust. Identities = 171/308 (55%), Positives = 210/308 (68%), Gaps = 3/308 (0%) Query: 5 LISFSNLDNWXXXXXXXXXXXXSGYLSERVGIVNIAINGGMVFGGMFLSLMSYAFVPNAN 64 ++S + L++W SGYL+ERVGI+NIAINGGMVFGG+F++L+SY F N N Sbjct: 1 MLSLAQLESWFFIAPALLLAVLSGYLAERVGIINIAINGGMVFGGLFMALLSYGFTNNLN 60 Query: 65 DSAPSWSLAISIPLSVIFASAVGFLFGIAAIKLKADHVIVGTGVNLLGTGINFFVAQNAR 124 SAPSWSL I+IPLSV+F+S +G LF +AA+KL+ADHVIVGTG+NLL +GI F++QNA Sbjct: 61 QSAPSWSLFITIPLSVLFSSVIGCLFALAAVKLRADHVIVGTGINLLASGITLFISQNAA 120 Query: 125 SLLNDTDLRVRYSF-VRTGNSVSIEGXXXXXXXXXXVLLVWYLMNFTKTGLRYRAVGENP 183 SL +DT LRVRY F ++T +VSIE + VWYLM+FTKTGLRYRAVGENP Sbjct: 121 SLFSDTTLRVRYLFPIQT--TVSIEAIGVFVFSLLLIGFVWYLMSFTKTGLRYRAVGENP 178 Query: 184 NVIDTQGISVYKYQWFGVMASTMVAALAGCCFALSPQVPXXXXXXXXXXXXXXXXXXXXX 243 NVIDTQGISVYKYQW G + S MVA L+G F LS Sbjct: 179 NVIDTQGISVYKYQWIGAICSMMVAGLSGSLFVLSVSNFPFNSGDVNGLGFIAIAIMIIS 238 Query: 244 XXXXXXXXXXSPLFALAYVLTTGVVGNANNTYLLRTIPFIISLLVMMVFGYLNVGPKNVG 303 +FA AYV T +G+ +N+YLLRTIPFIISLLVM++FG+LNV PKN+G Sbjct: 239 MWRIIPSIFIGLIFAYAYVFTNSQIGSNSNSYLLRTIPFIISLLVMLLFGFLNVAPKNIG 298 Query: 304 KHFDKGLR 311 KHFDKGLR Sbjct: 299 KHFDKGLR 306 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508000|ref|NP_109949.1| DNA topoisomerase I [Mycoplasma pneumoniae M129] (711 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072784.1| DNA topoisomerase I (topA) [Mycoplasma genitali... 1011 0.0 >ref|NP_072784.1| DNA topoisomerase I (topA) [Mycoplasma genitalium G-37] Length = 709 Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/714 (68%), Positives = 572/714 (80%), Gaps = 12/714 (1%) Query: 1 MSKNLVVIESPNKVKTLQKYLPND-FEIVSTIGHIREMVHKNFGFNEADYSPVWEDWTXX 59 M KNLVVIESPNKVKTL++YLP+D FEIVST+GHIREMV+KNFGF+E Y+P+WEDWT Sbjct: 1 MIKNLVVIESPNKVKTLKQYLPSDEFEIVSTVGHIREMVYKNFGFDENTYTPIWEDWTKN 60 Query: 60 XXXXXXXXXXXXXXXXXXXXXYDXXXXXXXXXXXXTNIYLATDPDREGEAISWHVYDVLD 119 ++ NI+LA+DPDREGEAISWHVYD+LD Sbjct: 61 KQKNPKQKHLLSK--------FEIIKSIKAKASDAQNIFLASDPDREGEAISWHVYDLLD 112 Query: 120 EKDKSKCQRITFNEITKNAVLDALKNPREIDQSWVQSQFARQILDRMIGFRLSRLLNNYL 179 +KDK+KC+RITFNEITK AV+DALK PR ID +WV+SQFARQILDRMIGFRLSRLLN+YL Sbjct: 113 QKDKAKCKRITFNEITKKAVVDALKQPRNIDLNWVESQFARQILDRMIGFRLSRLLNSYL 172 Query: 180 SAKSAGRVQSVALRFLEEREQEIRSFVPRFWWTLDVLLNPKAEGVREACANRSIPIVLRE 239 AKSAGRVQSVALRFLEERE+EI FVPRFWWT+DVLLN K + CAN+SIP+VLRE Sbjct: 173 QAKSAGRVQSVALRFLEEREKEIAKFVPRFWWTVDVLLN-KENNQKVVCANKSIPLVLRE 231 Query: 240 INPALRAGLK--FEEEKSVSGIDFLDEASAKKFGEQLKGVFEVYNIDETKHYSSSPNSAY 297 INP L A LK FE ++VSGIDFL+EASA +F QL G +EVY IDE K Y SSPN Y Sbjct: 232 INPELSASLKLDFEAAENVSGIDFLNEASATRFANQLTGEYEVYFIDEPKIYYSSPNPVY 291 Query: 298 TTASLQKDAINKLGWSSKKVTLIAQHLYEGVSINGEQTALISYPRTDSTRLSAQFQQSCK 357 TTASLQKDAINKLGWSSKKVT++AQ LYEG+S+NG+QTALISYPRTDS R+S QFQ C+ Sbjct: 292 TTASLQKDAINKLGWSSKKVTMVAQRLYEGISVNGKQTALISYPRTDSIRISNQFQSECE 351 Query: 358 EYILNHYGEKYLSNRIVSAKGKKGEKIIQDAHEAIHPTDINITPEMVKNAIKKDEFLLYR 417 +YI +G YL+++ + KK EKIIQDAHE IHPT I ITP +KN +K+DEFLLYR Sbjct: 352 KYIEKEFGSHYLADKNKLKRHKKDEKIIQDAHEGIHPTYITITPNDLKNGVKRDEFLLYR 411 Query: 418 LIWIRTVASLMADCKKSHTHIRFINDGNKFYASSKSLVFDGYRKIYEHFENKESNDLYID 477 LIWIRTVASLMAD K S T +RFIN NKFY SSKSL+FDGY+++YE + ++LYID Sbjct: 412 LIWIRTVASLMADAKTSRTIVRFINQKNKFYTSSKSLLFDGYQRLYEEIKPNTKDELYID 471 Query: 478 LDKIRVGDRFMAKDIKITARQTHPAARYTQASLIEALEKSNIGRPSTYNTMASVNLDRGY 537 L K+++GD+F + I + +T+P RYTQASLIE LEKSNIGRPSTYNTMASVNL+RGY Sbjct: 472 LSKLKIGDKFSFEKISVNEHKTNPPPRYTQASLIEELEKSNIGRPSTYNTMASVNLERGY 531 Query: 538 ASLNKHAFHVTQLGEQVNEELSKHFGKIINKEFTKNMEKSLDEIAENKKNYQEFLRDFWS 597 A+L F++T+LGE+VN ELSKHFG +INKEFTK MEKSLDEIAENK NYQEFL+ FW+ Sbjct: 532 ANLVNRFFYITELGEKVNNELSKHFGNVINKEFTKKMEKSLDEIAENKVNYQEFLKQFWT 591 Query: 598 NFKEEVKLAEGSIQRVKKEKEFVGRDCPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEF 657 NFK +VKLAE SIQ+VKKEKE V RDCP C PL+YRYTKRGNEKFVGCS+FP CKY+EF Sbjct: 592 NFKSDVKLAENSIQKVKKEKELVERDCPKCNQPLVYRYTKRGNEKFVGCSDFPKCKYSEF 651 Query: 658 SQNKPNLTLEKLEELCPECNSQLVKRRTKFNPNKTFVGCSNFPRCRYIKKDNAS 711 S KP LTLE L+ELCPECN++LVKRRTKFN KTF+GCSNFP CR+IKKDNA+ Sbjct: 652 SNPKPKLTLETLDELCPECNNKLVKRRTKFNAKKTFIGCSNFPNCRFIKKDNAA 705 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508001|ref|NP_109950.1| conserved hypothetical protein, similar to reticulocyte binding protein [Mycoplasma pneumoniae M129] (475 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072785.1| hypothetical protein MG123 [Mycoplasma genitali... 348 6e-098 >ref|NP_072785.1| hypothetical protein MG123 [Mycoplasma genitalium G-37] Length = 471 Score = 348 bits (893), Expect = 6e-098, Method: Compositional matrix adjust. Identities = 190/435 (43%), Positives = 289/435 (66%) Query: 41 NLHLKNNKKRTKYHLEPEQIKHKIIQNKTKLGKMLDFYQQQINTTATELKWLDGQFQQID 100 +LHLK NK KY L +QI+ ++ + + +L +L+FYQQ+I + E WL+ Q Q ID Sbjct: 37 SLHLKQNKNNKKYILNDQQIQLRLTEKQAQLTTLLNFYQQKIESVNREKSWLESQLQVID 96 Query: 101 ETDKKKAHQIAIRLARNQLLQQLSVKLDQKQFSQRANNELQKLKLSNLESFTNQKIKWDQ 160 + D K+A ++ + L ++Q+L QL+ KL QK+ Q NELQK KLS LE +QKIK + Sbjct: 97 KKDLKQAQKLTLHLKKDQILAQLNEKLIQKKVDQPLVNELQKTKLSYLERLVDQKIKLSE 156 Query: 161 EGMKSAVSRVTINEWTFNHFAGKNRVYWDYFKQVCDVDCSIKPLKDQLEITFSSWSLLKR 220 KSA + + E FN FA KN+V W+YFKQVCD DC++K L+D++EITFS+WS L+R Sbjct: 157 NNFKSAFLKTKVKETAFNIFAAKNKVNWEYFKQVCDADCTLKNLEDEVEITFSNWSYLRR 216 Query: 221 LQAKNLFNKLIAQSSSVKMSEKLINNALQLVQDNLALQASESGNKLLKEFELSCTNTQLV 280 +QA F KLI++ +VK++E +IN L V++ ++ A ++G K++KEF+++ N Q+ Sbjct: 217 MQALLAFEKLISKIKTVKINELVINETLDEVKNEISQTAFQAGEKIVKEFQITNLNEQIT 276 Query: 281 QLLGFQQFYFGTNLLSLLDLSRSIAVLVRFLNEHCKWELNERLLVETALFNNLQWVNNND 340 +L+G Q++YFGT+ L+LL+L+ LV LN+ K +L+ LL +LFN L+WV+NN Sbjct: 277 RLIGLQKYYFGTDQLNLLELAVLTTKLVILLNKKFKLDLDLELLKAASLFNYLKWVDNNQ 336 Query: 341 FFLKSHNDLKQLHLSAEQLAIIEQQNRPFYIDAYALLIAGVKQMLMEHDAVEPKQIHFHN 400 FF + L QL +S + +AII+QQ FY D Y +LI GVK M+ EH+ ++ +++ F N Sbjct: 337 FFQILNTKLNQLLISDQVIAIIQQQELSFYPDQYGMLINGVKTMIREHNTIDFEKLVFLN 396 Query: 401 AKKVMESFQLFGIDQLALIEYNNCLYGFVTTKLYEIKQLDDLALFKVLFKSFLNKHLKQK 460 + K++++F L+ ++ + +EYNNC Y FV+ K +EIK L +L LF VL K+FL K KQ Sbjct: 397 STKLIDNFYLYDLNMIHAVEYNNCFYYFVSVKPFEIKSLAELDLFVVLLKTFLAKKQKQN 456 Query: 461 FATISLFVNTQTLMI 475 + LF+ T+ L I Sbjct: 457 PKAVKLFITTKILAI 471 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508002|ref|NP_109951.1| thioredoxin [Mycoplasma pneumoniae M129] (102 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072786.1| thioredoxin (trxA) [Mycoplasma genitalium G-37] 152 1e-039 >ref|NP_072786.1| thioredoxin (trxA) [Mycoplasma genitalium G-37] Length = 102 Score = 152 bits (383), Expect = 1e-039, Method: Compositional matrix adjust. Identities = 70/102 (68%), Positives = 80/102 (78%) Query: 1 MVTEIKSLKQLGELFASNNKVIIDFWAEWCGPCKITGPEFAKAASEVSTVAFAKVNVDEQ 60 MVTEI+SLKQL E+F++ VI+DFWA WCGPCK+T PEF KAA E S F KVNVD+ Sbjct: 1 MVTEIRSLKQLEEIFSAKKNVIVDFWAAWCGPCKLTSPEFQKAADEFSDAQFVKVNVDDH 60 Query: 61 TDIAAAYKITSLPTIVLFEKGQEKHRAIGFMPKAKIVQLVSQ 102 TDIAAAY ITSLPTIV+FE G EK RAIGFMPK KI+ L + Sbjct: 61 TDIAAAYNITSLPTIVVFENGVEKKRAIGFMPKTKIIDLFNN 102 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508003|ref|NP_109952.1| 150-end, similar to phosphate hydrolising [Mycoplasma pneumoniae M129] (281 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072787.1| hypothetical protein MG125 [Mycoplasma genitali... 352 2e-099 >ref|NP_072787.1| hypothetical protein MG125 [Mycoplasma genitalium G-37] Length = 285 Score = 352 bits (904), Expect = 2e-099, Method: Compositional matrix adjust. Identities = 163/267 (61%), Positives = 214/267 (80%) Query: 15 SRTRQINDPTKQALANLIQKKPSLKVMILTGRSLFSTLKYVQELNELCKKPLVEYFCCYG 74 S+T++IN+P+K AL NLI KKPSLKVMILTGRS+FSTLK+V++LN L KKP+V+YFCCYG Sbjct: 15 SKTKKINNPSKLALTNLIAKKPSLKVMILTGRSVFSTLKHVEKLNSLFKKPIVDYFCCYG 74 Query: 75 GAKLYQLNNNQPQEQYKFLIDSRQVKTVFEIVEQHKGLFLAYLDKPKAPYIILGANQFYA 134 GAKLYQ+ N+PQE+YKF +++ V+T F I+++H+GL LAYLD +PY+ L N+ Sbjct: 75 GAKLYQIEANKPQERYKFCLENSVVETTFSIIKKHRGLCLAYLDSYVSPYLCLAGNKLLG 134 Query: 135 WLIKQFWYKQRCEYFKNDHLTDGILKINVYFACPLRLKKVYQIIKRQFQDTLNVVNFSKH 194 W K FWY++RC +F +HL GILKI+VYF R KKVY+I+K FQ+ +NV++FS + Sbjct: 135 WFTKYFWYRKRCVFFNQNHLKQGILKISVYFLSAKRCKKVYEILKNTFQEKVNVLSFSNN 194 Query: 195 LIEITHKDGNKGYAIEAIAKKQGLSLKRMAVIGDSLNDRSMFEKVQYSFAMSKSPDELKL 254 LIEITH D NKGYAIE +AK++ LSL R+AVIGDS ND +MF+K +YSFAMSKSP +LKL Sbjct: 195 LIEITHHDANKGYAIEYMAKREQLSLNRIAVIGDSWNDYAMFKKAKYSFAMSKSPSQLKL 254 Query: 255 LATEIGTKTNRFRFSSLVDLITEKIIN 281 +AT KTNR+RFS+L++LI+E IIN Sbjct: 255 IATNTSNKTNRYRFSTLLNLISETIIN 281 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508004|ref|NP_109953.1| tryptophanyl-tRNA synthetase [Mycoplasma pneumoniae M129] (346 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072788.1| tryptophanyl-tRNA synthetase (trpS) [Mycoplasma... 457 e-131 >ref|NP_072788.1| tryptophanyl-tRNA synthetase (trpS) [Mycoplasma genitalium G-37] Length = 347 Score = 457 bits (1176), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/342 (67%), Positives = 273/342 (79%) Query: 1 MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 60 M+KRA+TGIQASG+QHLGN+LGVMQ L +LQ Q QLF+FVADLH+ITVDF+P LK NN Sbjct: 1 MIKRAITGIQASGRQHLGNFLGVMQGLKQLQSQYQLFLFVADLHAITVDFEPTMLKDNNL 60 Query: 61 DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 120 LV+TLLA+GLD K LFLQSDL+EH+M+GYLM+ QSNLGELQRMTQFK KK Q RN Sbjct: 61 QLVKTLLALGLDYGKVNLFLQSDLMEHTMLGYLMLTQSNLGELQRMTQFKTKKLAQKRNS 120 Query: 121 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP 180 N T+ IPTGLLTYP LMA DILLYQPDIVPVGNDQKQHLELT DLA+R+ KKFKLKL+LP Sbjct: 121 NNTITIPTGLLTYPVLMAADILLYQPDIVPVGNDQKQHLELTNDLAKRVAKKFKLKLKLP 180 Query: 181 QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATTDSFNKIRFAP 240 F++NKDTNRIMDL +P KKMSKS+ +QNGVIYLDD KE ++KK+R+ATTDSFNKIRFA Sbjct: 181 VFIENKDTNRIMDLSNPLKKMSKSNPDQNGVIYLDDSKETIIKKVRKATTDSFNKIRFAK 240 Query: 241 KTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNI 300 KTQPGVTN+L IL ALLKE VN +L+ ++G+DL Y+ KSYLDLKN L+ A +N++ ++ Sbjct: 241 KTQPGVTNLLVILTALLKEEVNHNLSKKIGSDLVKYYQNKSYLDLKNDLSSAVINVIESL 300 Query: 301 QRKREQISREQVFNCLQAGKNXXXXXXXXXXXXFYDGFGLGS 342 + K+ QI+ E V L GKN FY FGL S Sbjct: 301 KFKKAQITDEMVLKVLNDGKNQAKKVADETLKMFYKAFGLTS 342 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508005|ref|NP_109954.1| similar to (oxido/arsenate) reductase [Mycoplasma pneumoniae M129] (145 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072789.1| hypothetical protein MG127 [Mycoplasma genitali... 214 3e-058 >ref|NP_072789.1| hypothetical protein MG127 [Mycoplasma genitalium G-37] Length = 145 Score = 214 bits (545), Expect = 3e-058, Method: Compositional matrix adjust. Identities = 110/135 (81%), Positives = 126/135 (93%) Query: 5 KVNNDAGKTFILISSSCSSCQKAIEYFKENNLSYTIENFYKKPISDKRFRDILSLSEDGT 64 K N+DAGKTFILISSSCSSCQKAIE+F +N +SY +ENFYKKPISDKRF+DILSLSEDGT Sbjct: 6 KKNSDAGKTFILISSSCSSCQKAIEFFDQNKISYVVENFYKKPISDKRFKDILSLSEDGT 65 Query: 65 ESLFSKRADQIRSNTNQSVEDLTIPELIKLIRERPSILRRPIIIQYNSSGIPKRMRIGYN 124 ESLFSKRADQI++ + SVE+L+I ELIKL+RERPS+LRRPIIIQYNSSGIPKRMRIGYN Sbjct: 66 ESLFSKRADQIKATNSVSVEELSISELIKLVRERPSLLRRPIIIQYNSSGIPKRMRIGYN 125 Query: 125 AAEIKVFERSLMEPK 139 ++EIKVFER L+EPK Sbjct: 126 SSEIKVFERKLIEPK 140 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508006|ref|NP_109955.1| hypothetical protein MPN267 [Mycoplasma pneumoniae M129] (259 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072790.1| hypothetical protein MG128 [Mycoplasma genitali... 399 e-113 >ref|NP_072790.1| hypothetical protein MG128 [Mycoplasma genitalium G-37] Length = 259 Score = 399 bits (1026), Expect = e-113, Method: Compositional matrix adjust. Identities = 190/259 (73%), Positives = 220/259 (84%) Query: 1 MKYKIFASTTPQTEPVLQKLKQVLKGCEAVEKGFDYLFVLGGDGFFVSTVANYNCHNCRV 60 MKYKIFASTTPQTEPVL KL+ VLK +AVE G++Y+FVLGGDGFFVST+ANYNC +C+V Sbjct: 1 MKYKIFASTTPQTEPVLNKLRAVLKTWQAVENGYEYVFVLGGDGFFVSTLANYNCDSCKV 60 Query: 61 VGINTGHLGFYTSFNEKDLDDNFLQKLQQCHFQRISLLEVSVNGQQHLVLNELAVYTNTA 120 VGINTGH+GFYTSFN DLD+NF+ KL F++I+LLEV LVLNELAVYTNTA Sbjct: 61 VGINTGHIGFYTSFNGDDLDENFISKLTSFEFKKINLLEVKTKNHSFLVLNELAVYTNTA 120 Query: 121 YPINIFIDGEAWEFYRGSGLLIGPRTGSTALAKSAKGAVIFPGIDVLQIIEMNPLLHPNQ 180 YPINIFID WE YRGSGLLIGPRTGSTALAKSAKGAVIFP +DV+QIIE+NPLLHPNQ Sbjct: 121 YPINIFIDDNHWESYRGSGLLIGPRTGSTALAKSAKGAVIFPNVDVVQIIELNPLLHPNQ 180 Query: 181 VTIQSPIILPKETQVEFVVKKAFNPQQFPTFYCDGRKLELPNADTTLALKLVQSTPMFNI 240 +TIQSPIILP +T+VEF +KKAF +QFP FY DG KL+L N DT+++ +LV S MF+ Sbjct: 181 ITIQSPIILPMQTKVEFRIKKAFKAEQFPNFYADGIKLDLKNEDTSISFQLVLSRSMFHA 240 Query: 241 SLKTQDFINKLKSTFIKQS 259 SLKT+DFI+KLKSTFIKQS Sbjct: 241 SLKTKDFIDKLKSTFIKQS 259 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508007|ref|NP_109956.1| similar to PTS system: EIIB and N-term part of EIIC; bidomainal [Mycoplasma pneumoniae M129] (117 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072791.1| hypothetical protein MG129 [Mycoplasma genitali... 160 5e-042 >ref|NP_072791.1| hypothetical protein MG129 [Mycoplasma genitalium G-37] Length = 117 Score = 160 bits (404), Expect = 5e-042, Method: Compositional matrix adjust. Identities = 72/117 (61%), Positives = 97/117 (82%) Query: 1 MKVLLWIGYVLSFGLLYLYLVKRAKRAALQLNNKLVESHTIPFAVRDFIAACGGRTNFVS 60 MK LLW+GY+ SFGLLYL++VK++K+ A Q N KLVES +IPF V+DF++ACGG+ NFV+ Sbjct: 1 MKWLLWLGYIFSFGLLYLWIVKKSKQIAQQPNTKLVESTSIPFKVKDFVSACGGKENFVN 60 Query: 61 LRTSPTQLIVSFAKPELVQIAALQKLGIKGINKSQNQYRFVLGNFVNQLKQQIENER 117 ++T+PTQLIV+F V + L L IKGINK+QNQ+RFVLGNFVN+LK++IE+E+ Sbjct: 61 IKTTPTQLIVTFKDVNSVSLTKLNALNIKGINKNQNQFRFVLGNFVNELKKKIEDEQ 117 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508008|ref|NP_109957.1| nucleotide binding protein [Mycoplasma pneumoniae M129] (493 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072792.1| hypothetical protein MG130 [Mycoplasma genitali... 544 e-156 >ref|NP_072792.1| hypothetical protein MG130 [Mycoplasma genitalium G-37] Length = 484 Score = 544 bits (1401), Expect = e-156, Method: Compositional matrix adjust. Identities = 267/452 (59%), Positives = 348/452 (76%), Gaps = 8/452 (1%) Query: 40 YQYRVYKK-KQRANLTKQTYNNDYGQIVNLKQQNGAKIKELANLKDQLSELGQKFNTTLS 98 +QYR+YKK ++AN K N+Y +I LK QN + +L ++L+EL + + L Sbjct: 39 FQYRIYKKNPKKANNFKA---NEYEKIKLLKNQNFTESNKLIATTNELNELTSQLDNILV 95 Query: 99 EIINKPLVNVIDEYLDEQFKQAANFREAELNAVLDSNDQKTVFHKRLFNKFHFGVDKLAN 158 IINKPL +++++LDEQ KQ + ++ S F+ +LFN FHFGVDKL N Sbjct: 96 RIINKPLAKLVNDFLDEQIKQIVKLDKN--SSDFHSESDNLPFYTKLFNDFHFGVDKLIN 153 Query: 159 INVKNPLNLCWVDSASFTVIESDFRKLNGVGGINKKLLIEKLRIEDIIFTNIDKKYYEVQ 218 IN+KNPL WV S SF + ESDFRKLNG+ GINKKLL+EKLRIEDI+FT+++KKY EV Sbjct: 154 INIKNPL-YNWVYSPSFLISESDFRKLNGISGINKKLLVEKLRIEDIVFTDLNKKY-EVN 211 Query: 219 ILSDSPVKVQKTVLTIRNILINDYVDNEKIESYAREANGYFNDHCKLIGKQVLERLNIFE 278 +L++SP+K QKTVLT+RNIL+NDYVDNE+IESY ++AN +F +HCK IGK++LE LNIF Sbjct: 212 VLTESPIKAQKTVLTVRNILMNDYVDNERIESYVQQANFFFTEHCKKIGKEILESLNIFI 271 Query: 279 ISPKLHKFFGLLAFRYSFGQNVLSHCLETGFLTAYLALLVNFKPDVALKCGLYHDIGKAD 338 S LH+ FG LAFRYSFGQNVLSH LET FLTA+LA L+ +++LKCGL HDIGK++ Sbjct: 272 SSSSLHRHFGFLAFRYSFGQNVLSHSLETAFLTAHLAALIELDSELSLKCGLLHDIGKSN 331 Query: 339 DENGKKNHTVTGAKIGDEFYFENDVKYTIANHHNKNVDNVYCRLTQIGDKLSAGRLGARS 398 D+NGK++HT+TGAK+ ++F +D+KYTIANHHNK++DN YCRLTQI DKLSA R+GARS Sbjct: 332 DDNGKESHTITGAKLAEQFQLPDDIKYTIANHHNKHIDNTYCRLTQIADKLSAARIGARS 391 Query: 399 DSSVLFSQLKQELKQIVEETLAQFKTTILLGQSGRRLVIWLETNQHNNIIDNQQLTDLAT 458 DSS+LF QLK ELK+IV++T+ F TTILLGQSGRRL+IWLET N ++ N+Q+ ++ Sbjct: 392 DSSLLFKQLKDELKKIVDKTINNFHTTILLGQSGRRLMIWLETKNQNQLLSNEQIIEMVE 451 Query: 459 TIKSKIVQNNITNRFPIKVVLRYNFEHSFDTK 490 IK++I +N ITN FPIKVV+RYNFEHSF+TK Sbjct: 452 KIKAEIAKNPITNHFPIKVVIRYNFEHSFNTK 483 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508009|ref|NP_109958.1| hypothetical protein MPN270 [Mycoplasma pneumoniae M129] (95 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072793.1| M. genitalium predicted coding region MG131 [My... 92 9e-022 >ref|NP_072793.1| M. genitalium predicted coding region MG131 [Mycoplasma genitalium G-37] Length = 74 Score = 92.4 bits (228), Expect = 9e-022, Method: Compositional matrix adjust. Identities = 46/72 (63%), Positives = 60/72 (83%) Query: 1 MQYTVLIPLFIFIGAMVLFGFSFQKKQPQRRIVQILFLAYCVDFLALIIAVMMLTFLSYD 60 MQY+ LIPLFI + ++VLF FSF+K Q + +IV+ILF AYC+DFLALI+AVM+LTFLS+ Sbjct: 1 MQYSALIPLFILLISLVLFCFSFRKNQSENQIVKILFFAYCIDFLALILAVMLLTFLSHG 60 Query: 61 DLMLGVLIPVLI 72 L L +LIPVL+ Sbjct: 61 LLSLAILIPVLV 72 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508010|ref|NP_109959.1| hypothetical protein MPN271 [Mycoplasma pneumoniae M129] (251 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508011|ref|NP_109960.1| hypothetical protein MPN272 [Mycoplasma pneumoniae M129] (93 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508012|ref|NP_109961.1| nucleotidyl hydrolases/transferase [Mycoplasma pneumoniae M129] (144 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072794.1| hit protein, putative [Mycoplasma genitalium G-37] 207 4e-056 >ref|NP_072794.1| hit protein, putative [Mycoplasma genitalium G-37] Length = 141 Score = 207 bits (527), Expect = 4e-056, Method: Compositional matrix adjust. Identities = 92/134 (68%), Positives = 117/134 (87%) Query: 8 ANNNCIFCGIVEGNVKSFKVGENEHAFAFLDAFPVADGHTLVIPKKHAVNYSSTDDESLK 67 ++CIFC IV+G++ S+K+GENEHA AFLDAFPVADGHTLVIPKKHAV++SSTD + L+ Sbjct: 5 TTSSCIFCDIVQGSITSYKIGENEHAIAFLDAFPVADGHTLVIPKKHAVDFSSTDQKELQ 64 Query: 68 AVSLLAKEMALKLQQRLQPAGLNYVVNEGAKAGQEVFHYHMHVVPKYETGLGFCYNVRKT 127 AVSLLAK++ALKL+ L+P+GLNYV NEGA AGQ VFH+H+H+VPKYETG GF YNV KT Sbjct: 65 AVSLLAKQIALKLKMTLKPSGLNYVSNEGAIAGQVVFHFHLHIVPKYETGKGFGYNVNKT 124 Query: 128 NNRSIEANWELLTK 141 N RS+E N++L+++ Sbjct: 125 NKRSLEENYQLISE 138 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508013|ref|NP_109962.1| ABC transporter (sulfate/molybdenum) permease subunit [Mycoplasma pneumoniae M129] (266 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072795.1| hypothetical protein MG133 [Mycoplasma genitali... 297 9e-083 ref|NP_073122.1| hypothetical protein MG452 [Mycoplasma genitali... 62 4e-012 >ref|NP_072795.1| hypothetical protein MG133 [Mycoplasma genitalium G-37] Length = 228 Score = 297 bits (760), Expect = 9e-083, Method: Compositional matrix adjust. Identities = 144/225 (64%), Positives = 177/225 (78%) Query: 36 MVASAVISVVYNNQPQLIWFTNFDTFTYQSNTIAAVCVLMYLCKRRCKLFDNNALFLSAA 95 MV +A+ISV + Q LIWFTNFDTFTYQSN++A V Y + + F+N++L LS Sbjct: 1 MVITALISVANSGQMSLIWFTNFDTFTYQSNSLAIFLVWYYFLNHKSRWFENSSLVLSVT 60 Query: 96 GYLVFTVIFFNLYVLSRVTGFVNVEEHVKGWFSTITSEMPYSFSGNPLTDWISFAQLFLH 155 GYLVFTVIFFN Y LSR TG VN+E V+GWFSTIT+++PYSF+G+ + DW +F++L LH Sbjct: 61 GYLVFTVIFFNFYALSRFTGIVNIEPDVQGWFSTITTQLPYSFNGSFINDWNAFSELLLH 120 Query: 156 VIYPASFFGFIWIFFKTYKMREPLHELGKFLLKAGVYPSLYAFYLQTVPFLKIWDNGHDS 215 VI+P +F ++ + FKTYK +P L FLLKAG+YPS+YAFYLQT+PFL +WDNG +S Sbjct: 121 VIHPLFYFIYVGLLFKTYKFIKPPRNLQSFLLKAGIYPSIYAFYLQTIPFLNVWDNGENS 180 Query: 216 YSVYGFFSQTKYNSYVWFWSIPIFASMFLILWGLFVINNRYYGAK 260 YSVYGFF+QTKYNSYVW WSIPIFASMFLILW LFVINN YYG K Sbjct: 181 YSVYGFFTQTKYNSYVWIWSIPIFASMFLILWMLFVINNHYYGKK 225 >ref|NP_073122.1| hypothetical protein MG452 [Mycoplasma genitalium G-37] Length = 261 Score = 62.4 bits (150), Expect = 4e-012, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 30/188 (15%) Query: 59 DTFTYQSNTIAAVCVLMYLCKRRCKLFDNNALFLSAAGYLVFTVIFFNLYVLSRVTGFVN 118 D FT Q+N + + ++Y + L N FLSA Y++FT I +NL +LS + G Sbjct: 65 DKFTDQTNVMLLIYAVIYTFNPKSWLLKNQQFFLSALAYILFTFIGYNL-ILS-IAGI-- 120 Query: 119 VEEHVKGWFSTITSEMPYSFSGNPLTDWISFAQLFLHVIYPASFFGFIWIFFKTYKMREP 178 S PY + + +FLHVI P +FF +I K K Sbjct: 121 ----------AYKSTNPYKLT----------SSIFLHVIAPIAFFIASFIKIKHEKDVN- 159 Query: 179 LHELGKFLLKAGVYPSLYAFYLQTVPFLK--IWDNGHDSYSVYGFFSQTKYNSYVWFWSI 236 ++ K LL +YP +Y YL T+P+++ +++ +Y++YG + TK N + W + Sbjct: 160 INMFFKSLLLFMIYPLIYGLYLVTIPYVRHYLFNGRPSTYTIYGSITNTKNNPFAW---L 216 Query: 237 PIFASMFL 244 +FA +F+ Sbjct: 217 VVFAVLFI 224 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508014|ref|NP_109963.1| hypothetical protein MPN275 [Mycoplasma pneumoniae M129] (100 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072796.1| hypothetical protein MG134 [Mycoplasma genitali... 148 1e-038 >ref|NP_072796.1| hypothetical protein MG134 [Mycoplasma genitalium G-37] Length = 100 Score = 148 bits (374), Expect = 1e-038, Method: Compositional matrix adjust. Identities = 71/100 (71%), Positives = 82/100 (82%) Query: 1 MSFKKITEMMRQAERQSKQKALDFEQKLFEYSYKNAAIKIIIFGNLTIKSITIDPALIDP 60 MSFKKI EMMRQAER++K+K L FEQ+ FEY+YKN AIKI I G+LT+KSI IDP LID Sbjct: 1 MSFKKIAEMMRQAERETKKKTLAFEQQAFEYNYKNGAIKITILGDLTLKSINIDPVLIDA 60 Query: 61 EDKVTLEEMITEAVNEAVGDVKAKYDQLMEEAMPQMPGLF 100 DKV LEEMI EA NEAV DVK KYD L+E+ MP++PGLF Sbjct: 61 SDKVILEEMIIEATNEAVSDVKTKYDNLVEKTMPKVPGLF 100 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508015|ref|NP_109964.1| hypothetical protein MPN276 [Mycoplasma pneumoniae M129] (285 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072797.1| hypothetical protein MG135 [Mycoplasma genitali... 364 e-103 >ref|NP_072797.1| hypothetical protein MG135 [Mycoplasma genitalium G-37] Length = 280 Score = 364 bits (934), Expect = e-103, Method: Compositional matrix adjust. Identities = 176/279 (63%), Positives = 219/279 (78%), Gaps = 5/279 (1%) Query: 1 MQSLNYLVVILTVAGVLVILGFTPLIRKLKIQFYCLQVFAAILFLYVFFGRQIIYIFPDI 60 MQ+LNYLV+IL +AGV+ +L FTPL+RKLKI+FY +QV A +LF+YVFFGRQIIY+FPD+ Sbjct: 1 MQTLNYLVIILIIAGVISVLAFTPLVRKLKIRFYLIQVLAIVLFVYVFFGRQIIYLFPDV 60 Query: 61 YGTXXXXXXXXXXXPLDSLRLSRIFLLDLCPFFALIGPIFIFLRQKKVAGVLAIFGFYGA 120 YG LDSLRLSRIFLLDLCPFFA+I P+F+FL+QKK++GVLA+FG +GA Sbjct: 61 YGQNSQSSQ-----NLDSLRLSRIFLLDLCPFFAVIAPVFVFLKQKKISGVLAVFGLFGA 115 Query: 121 AITLFGELIFTPLKQEEIVKFLFVGLENNQVYFMMHXXXXXXXXAVFLWDDGFSLISFFY 180 +TLFGELIFTP+ +++IV F+FVG NNQ+YFMMH A+ LWD+ FSLISFFY Sbjct: 116 LVTLFGELIFTPVNEQDIVNFIFVGTGNNQIYFMMHFLSLLVSLAIILWDNCFSLISFFY 175 Query: 181 IHVFALAYLSYVALMVNIFKGQITGNTTGILAEDWLSGEYKNVAVFLKLDPKNADLIFGV 240 IHVFAL Y SYVALMV++FKGQITGNTTGILA DW +GEYKNVA FL L + L+F V Sbjct: 176 IHVFALIYFSYVALMVSVFKGQITGNTTGILASDWTNGEYKNVATFLNLSNSDPQLVFIV 235 Query: 241 SFGLSYFAIVLLTVLVNIPTFIQLTKDKQMVKLALQLKK 279 F LSY AI+L+T+ NIPTF+++ KDK +K ++K Sbjct: 236 GFSLSYVAILLMTLFANIPTFMEMKKDKIFIKKENLIRK 274 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508016|ref|NP_109965.1| lysyl-tRNA synthetase [Mycoplasma pneumoniae M129] (489 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycoplasma genita... 744 0.0 ref|NP_072696.1| aspartyl-tRNA synthetase (aspS) [Mycoplasma gen... 69 7e-014 ref|NP_072775.1| asparaginyl-tRNA synthetase (asnS) [Mycoplasma ... 68 2e-013 >ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycoplasma genitalium G-37] Length = 490 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/490 (71%), Positives = 412/490 (84%), Gaps = 1/490 (0%) Query: 1 MSDRLNDXXXXXXXXXXXXXXTGNDPYLITKIENTHSAASFQKAFANQSDAELKQYQVI- 59 MSDRLND T NDPYL+TK THS+ SFQ F S+ ELK+ + Sbjct: 1 MSDRLNDQAQHRLQKLLRLKQTNNDPYLVTKTSLTHSSKSFQVEFEKCSEEELKKKATVS 60 Query: 60 LTGRIIALRQTFIIIQDFSGKMQLYINKKTAPELFEYFNNYIDLGDQIVATGHPMMTKTG 119 L GRIIA+RQTF+IIQDF G++QLYINKK P+LF+YFN ++D+GDQIV +G PM+TKT Sbjct: 61 LAGRIIAIRQTFLIIQDFDGQVQLYINKKIHPKLFDYFNEFVDIGDQIVVSGKPMLTKTK 120 Query: 120 VLTLNVERLQIVAKCLQTPPEKWHGLTDPEARARKRYLDLTYNRAQVEVFLKRTQIITAI 179 VLTL VE ++I+AKCL PPEKWHGLTD E RARKR+LDLTYN A +VFLKRT+II +I Sbjct: 121 VLTLAVEEMKIIAKCLLVPPEKWHGLTDIETRARKRFLDLTYNLAMRDVFLKRTKIIKSI 180 Query: 180 RTFLNEAGFLEVETPILQAVLGGANAKPFKTHYNALKGDFYLRIANEIALKKLIVGGLPK 239 R+FL++ GF+EVETP LQAVLGGANAKPFKTHYNALK DFYLRIANEIALKKLI+GG K Sbjct: 181 RSFLDQNGFIEVETPTLQAVLGGANAKPFKTHYNALKADFYLRIANEIALKKLIIGGFNK 240 Query: 240 VYEMGRMFRNEGVDTTHNPEFTSIEMYQANADYAVMMDLTENLIKFVCKTLNQWSFNWNG 299 VYEMG+MFRNEGVDTTHNPEFTSIE+YQA AD+ VM+ L E LI+ +C++LNQ+SFNWN Sbjct: 241 VYEMGKMFRNEGVDTTHNPEFTSIEIYQAYADFEVMLVLVEKLIQSLCESLNQFSFNWNN 300 Query: 300 QTLDLAKPFKKVKMVDLICQVTGVNFDDVKDDQTAIALAKQHKVELKKHEQNKQHIINRF 359 +T++L PF K+ MV+LI +VTG++F+ VKDDQ+AI LA++H V+L KH+QNKQHIIN F Sbjct: 301 KTINLKTPFHKITMVELIKKVTGIDFNSVKDDQSAILLAEKHHVKLAKHQQNKQHIINLF 360 Query: 360 FEQFCEHTLIQPTFVTHYPKAVSPLAKQDPHNPEFTERFELFINTKELANAYSELNDPLE 419 FEQFCE TLI+PTFVTHYPKAVSPLAKQDP NPEFT+RFELFIN KE+ANAYSELNDPLE Sbjct: 361 FEQFCEQTLIEPTFVTHYPKAVSPLAKQDPSNPEFTQRFELFINGKEIANAYSELNDPLE 420 Query: 420 QRARFEQQLQEKRMGNDEASELDESFLDALSFGLPPTGGLGIGVDRLVMLLCECSSIRDV 479 QR RFEQQL+EK++GNDE SELDESFL+ALSFG+ T GLGIG+DRLVMLLCEC+SIRDV Sbjct: 421 QRKRFEQQLEEKQLGNDETSELDESFLEALSFGMVNTAGLGIGIDRLVMLLCECNSIRDV 480 Query: 480 VFFPQLRELK 489 VFFPQLRE K Sbjct: 481 VFFPQLREHK 490 >ref|NP_072696.1| aspartyl-tRNA synthetase (aspS) [Mycoplasma genitalium G-37] Length = 550 Score = 69.3 bits (168), Expect = 7e-014, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 29/238 (12%) Query: 58 VILTGRIIALRQ----TFIIIQDFSGKMQLYINKKTAPELFEYFNNYIDLGDQIVATGHP 113 +++ G I +++ FII+ D SG +Q+ K Q + Sbjct: 21 IVIIGWIKRIKKLGEINFIIVGDKSGTIQVTCKDKEQI--------------QQLTREDI 66 Query: 114 MMTKTGVLTLNVERLQIVAKCLQ------TPPEKWHGLTDP--EARARKRYLDLTYNRAQ 165 ++ K + L+ R +++ ++ TPP TD E R + RYLDL Q Sbjct: 67 VIVKAKLQRLDSVRFELINPTIKLFSKSKTPPLIIEDETDALEEVRLKYRYLDLRRRLMQ 126 Query: 166 VEVFLKRTQIITAIRTFLNEAGFLEVETPILQAVLGGANAKPFKTHYNALKGDFYLRIAN 225 + L R Q I AIR + N+ GF+E+ETP L A+ F K FY + + Sbjct: 127 KRLLL-RHQFILAIRNWFNQQGFIEIETPTLSKS-TPEGAQDFLVPARIRKDCFYALVQS 184 Query: 226 -EIALKKLIVGGLPKVYEMGRMFRNEGVDTTHNPEFTSIEMYQANADYAVMMDLTENL 282 +I + L++ G+ K +++ R++R+E PE T I+ + + ++M+L E L Sbjct: 185 PQIYKQLLMIAGVEKYFQIARVYRDEDSRKDRQPEHTQIDFEISFCNQKMIMNLVEKL 242 >ref|NP_072775.1| asparaginyl-tRNA synthetase (asnS) [Mycoplasma genitalium G-37] Length = 456 Score = 68.2 bits (165), Expect = 2e-013, Method: Compositional matrix adjust. Identities = 105/461 (22%), Positives = 187/461 (40%), Gaps = 44/461 (9%) Query: 48 QSDAELKQYQVILTGRIIALRQT----FIIIQDFSG--KMQLYINKKTAPELFEYFNNYI 101 Q+ + Q+ L+G + R + F+ I D S +Q + ++ P++F + Sbjct: 11 QTPRKFNNKQIKLSGWVKNKRASANIIFLAISDGSSINTLQAVVKQEDNPQVFSLLQT-V 69 Query: 102 DLGDQIVATGHPMMTKTGV--LTLNVERLQIVAKCLQTPP--EKWHGLTDPEARARKRYL 157 +L ++ G ++T L L ++++ ++A+ P +K H + A R Sbjct: 70 NLASAVMVWGEIILTPKAKQPLELKLKQVSLLAQAESDYPLQKKEHSQEFFRSNAHLRVR 129 Query: 158 DLTYNRAQVEVFLKRTQIITAIRTFLNEAGFLEVETPILQA--VLGGANAKPFKTHYNAL 215 TY V R+ + AI + + F+ V++PIL + G K Sbjct: 130 AKTY----FAVMKIRSVLSHAIFEYFFKNDFILVQSPILTSNDCEGAGETFVIKDSETFF 185 Query: 216 KGDFYLRIANEIALKKLIVGGLPKVYEMGRMFRNEGVDTT-HNPEFTSIEMYQANADYAV 274 +L ++ + + KV+ G FR E T H EF IE A A+ Sbjct: 186 NKTTFLTVSGQFGAEAF-AQAFKKVFTFGPTFRAEKSHTNRHLSEFWMIEPEIAFANLKD 244 Query: 275 MMDLTENLIKFVCKTLNQWSFNWNGQTLDLAKPFKKVKMVDLICQVTGVNFDDVKDDQTA 334 +M L +NLIKF+ K + + N + + LAK F + +L ++ F ++ + Sbjct: 245 LMQLIQNLIKFLIKKVME---NASDELNVLAKQFSNDIISNLKTIISTKKFPIIEYSKAL 301 Query: 335 IALAKQHKVELKKHEQN---------KQHIINRFF-EQFCEHTLIQPTFVTHYPKAVSPL 384 L + + E N +H RF EQ+ ++ QP FV +YPK + Sbjct: 302 AILKESSDTKKTNFELNDFSFGIDLKTEH--ERFLCEQYFQN---QPLFVINYPKELKAF 356 Query: 385 AKQDPHNPEFTERFELFINTKELANAYSELNDPLEQRARFEQQLQEKRMGNDEASELDES 444 + + + +L + SE L Q Q L N + L+ Sbjct: 357 YMKTNTDNKTVAAVDLLLPKIGEICGGSERESDLNQLKNRCQSL------NIDTKSLNW- 409 Query: 445 FLDALSFGLPPTGGLGIGVDRLVMLLCECSSIRDVVFFPQL 485 +LD +G + G G+G DRL+ +C +IRD + FP++ Sbjct: 410 YLDMRKWGYFASAGFGLGFDRLLAYICGLENIRDAIPFPRV 450 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508017|ref|NP_109966.1| udp-galactopyranose mutase [Mycoplasma pneumoniae M129] (399 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072799.1| UDP-galactopyranose mutase (glf) [Mycoplasma ge... 505 e-145 >ref|NP_072799.1| UDP-galactopyranose mutase (glf) [Mycoplasma genitalium G-37] Length = 404 Score = 505 bits (1301), Expect = e-145, Method: Compositional matrix adjust. Identities = 242/398 (60%), Positives = 302/398 (75%), Gaps = 1/398 (0%) Query: 1 MTLFSFPNYVNWNKFDFIVLGAGISGIVLSHVLAQHGKSVLLLEKRNQLGGNCYDKLDET 60 + LFS P+ VN N FD +++GAGISGIVL+++LA H K VL++EKR+ +GGNCYDK+D Sbjct: 7 VMLFSSPSCVNINSFDILIVGAGISGIVLANILANHNKRVLIVEKRDHIGGNCYDKVDSK 66 Query: 61 TGLLFHQYGPHIFHTDNQKVMDFIQPFFELNNYQHRVGLQLDNNLDLTLPFDFSQMRKLL 120 T LLFHQYGPHIFHT+NQ V++FI PFFELNNY HRVGL+L NNLDLTLPFDF Q+ KL+ Sbjct: 67 TQLLFHQYGPHIFHTNNQTVINFISPFFELNNYHHRVGLKLKNNLDLTLPFDFQQIYKLM 126 Query: 121 DTKTASSLINFFQQHFPAEKHLTLMQLQTINFAPVQQLYQFLKIKVYGPYSVKMWGMPLE 180 K L++FF+++F HL+L +LQ I+ Q+LYQFL VY PYSVKMWG+P Sbjct: 127 G-KDGRKLVSFFKENFSLNTHLSLAELQLIDNPLAQKLYQFLISNVYKPYSVKMWGLPFA 185 Query: 181 QIDPSVLGRVKISLSENSSYFPTATIQGLPKGGYTKAFTKMVDHPLIDLRLNCPANLISV 240 I+ +V+ RVKI LSE SSYFP A IQGLPK GYT +F KM+ +PLID++LNC NL+ Sbjct: 186 MINENVINRVKIVLSEQSSYFPDAIIQGLPKSGYTNSFLKMLANPLIDVQLNCKDNLLVY 245 Query: 241 NNNQLLFANQPITKPVVYCGLIDQLFGYCFGRLQYRSLHFEWKRYAVKQHQAYPVMNWPL 300 + +L F N I KPVVYCGLID+LF +CFG LQYRSL F WKR+ K++Q YPV+N PL Sbjct: 246 QDEKLFFNNNLIEKPVVYCGLIDKLFNFCFGHLQYRSLAFSWKRFNQKKYQTYPVVNMPL 305 Query: 301 HPTITRQVEYKQLTQEGLESNQTIVSCETPGAFREGDPRFMEPYYPLNDVSNNALFARYL 360 +ITR VEYKQLT +G QTIVS ETPG++ DPRF EPYYP+N+ N+ LF +Y Sbjct: 306 AKSITRSVEYKQLTNQGSFKPQTIVSFETPGSYAINDPRFNEPYYPINNTLNDTLFKKYW 365 Query: 361 KLANAIPNIHLLGRLALYQYIDMDRAIAQSLAKAEQLL 398 K A+ + N+HLLGRLA YQYIDMD+AI S+ KA+QLL Sbjct: 366 KKASKLKNLHLLGRLATYQYIDMDKAILLSIKKAQQLL 403 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508018|ref|NP_109967.1| GTP-binding membrane protein LepA [Mycoplasma pneumoniae M129] (581 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072800.1| GTP-binding membrane protein (lepA) [Mycoplasma... 985 0.0 ref|NP_072751.1| elongation factor G (fus) [Mycoplasma genitaliu... 96 1e-021 ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplasma genitali... 72 1e-014 ref|NP_072804.1| translation initiation factor 2 (infB) [Mycopla... 61 3e-011 >ref|NP_072800.1| GTP-binding membrane protein (lepA) [Mycoplasma genitalium G-37] Length = 598 Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/562 (83%), Positives = 517/562 (91%) Query: 1 MEQQKIRNFSIIAHIDHGKSTLSDRLIERSIGFEKRLLQAQMLDTMAIERERGITIKLNA 60 MEQ+ IRNFSIIAHIDHGKSTLSDRL+E S+GFEKRLLQAQMLDTM IERERGITIKLNA Sbjct: 1 MEQKNIRNFSIIAHIDHGKSTLSDRLLEHSLGFEKRLLQAQMLDTMEIERERGITIKLNA 60 Query: 61 VQLKMAQGNQQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYLA 120 V+LK+ N YLFHL+DTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISN YLA Sbjct: 61 VELKINVDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNAYLA 120 Query: 121 LENNLEIIPVINKVDMESADVEKTKQAFHQLLGVDPNTIPLVSAKTGLGIDQLITTIIEK 180 LENNLEIIPVINK+DM++AD+E TK + H LLGV+ N+I LVSAK LGIDQLI TII K Sbjct: 121 LENNLEIIPVINKIDMDNADIETTKDSLHNLLGVEKNSICLVSAKANLGIDQLIQTIIAK 180 Query: 181 VPPPKGDESKPLKALLFDSYYDPYKGVVCFIRIFEGSLKLNDKIRFARSNSVYQIVELGI 240 +PPPKG+ ++PLKALLFDSYYDPYKGVVCFIR+F+G LK+NDK+RF +SNSVYQIVELG+ Sbjct: 181 IPPPKGEINRPLKALLFDSYYDPYKGVVCFIRVFDGCLKVNDKVRFIKSNSVYQIVELGV 240 Query: 241 KNPFFEKQDVLKAGEIGWFSAGIKKLRDVTVGDTIVHAEDTTTPPLPGYKKVLPMIYCGL 300 K PFFEK+D L+AG++GWFSAGIKKLRDV VGDTIV +D T PL GYKK+LPMIYCGL Sbjct: 241 KTPFFEKRDQLQAGDVGWFSAGIKKLRDVGVGDTIVSFDDQFTKPLAGYKKILPMIYCGL 300 Query: 301 YPIDNNDYQNLKMAMEKIILSDVALEYEYETSQALGFGVRCGFLGLLHMDVIKERLEREY 360 YP+DN+DYQNLK+AMEKII+SD ALEYEYETSQALGFGVRCGFLGLLHMDVIKERLEREY Sbjct: 301 YPVDNSDYQNLKLAMEKIIISDAALEYEYETSQALGFGVRCGFLGLLHMDVIKERLEREY 360 Query: 361 NLKLISAPPSVRYKVLLTNGEELELDNPSLLPERSRIKSISEPFVRVYIDLPDHYLGTVI 420 NLKLISAPPSV YKVLLTNG+E+ +DNPSLLPERS+IK+ISEPFV+V+IDLPD YLG+VI Sbjct: 361 NLKLISAPPSVVYKVLLTNGKEISIDNPSLLPERSKIKAISEPFVKVFIDLPDQYLGSVI 420 Query: 421 DLCQNFRGQYEKLEEIDIDRKRLVYLMPLGEIIYSFFDKLKSITKGYASLNYEFDQYQVS 480 DLCQNFRGQYE L EIDI+RKR+ YLMPLGEIIYSFFDKLKSI+KGYASLNYEF YQ S Sbjct: 421 DLCQNFRGQYESLNEIDINRKRICYLMPLGEIIYSFFDKLKSISKGYASLNYEFYNYQHS 480 Query: 481 QLAKVEIMLNKQKVDALSFIAHHDFAFQRAKKFCVKLKELIPKHLFEIPIQATIGSKVIA 540 QL KVEIMLNKQK+DALSFI+H DFAF+RAKKFC KLKELIPKHLFEIPIQATIGSKVIA Sbjct: 481 QLEKVEIMLNKQKIDALSFISHKDFAFKRAKKFCTKLKELIPKHLFEIPIQATIGSKVIA 540 Query: 541 RETIKAVRKDVTAKLYGGDVTR 562 RETIKAVRKDV AKLYGGDV+R Sbjct: 541 RETIKAVRKDVIAKLYGGDVSR 562 >ref|NP_072751.1| elongation factor G (fus) [Mycoplasma genitalium G-37] Length = 688 Score = 95.5 bits (236), Expect = 1e-021, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 11/178 (6%) Query: 4 QKIRNFSIIAHIDHGKSTLSDRLIERSIGFEKRLLQAQ----MLDTMAIERERGITIKLN 59 + RNF I+AHID GK+T S+R++ S G ++ + ++D M E+ERGITI Sbjct: 8 KNFRNFGIMAHIDAGKTTTSERILFHS-GRIHKIGETHDGESVMDWMEQEKERGITITSA 66 Query: 60 AVQLKMAQGNQQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYL 119 A + + +L+DTPGHVDFT EV RSL +G + ++DA G++ QT + Sbjct: 67 ATSVSW----KNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQ 122 Query: 120 ALENNLEIIPVINKVDMESADVEKTKQAFHQLLGVD--PNTIPLVSAKTGLGIDQLIT 175 A + + +NK+D A+ E++ + Q LGV P P+ + GI +IT Sbjct: 123 ASRYEVPRVIFVNKMDKTGANFERSVLSIQQRLGVKAVPIQFPIGAENDFNGIIDIIT 180 Score = 65.5 bits (158), Expect = 2e-012, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 36/245 (14%) Query: 163 SAKTGLGIDQLITTIIEKVPPP------------------KGDESKPLKALLFDSYYDPY 204 SA GI L+ +++ +P P K + L F DP+ Sbjct: 260 SAFKNKGIKLLLDAVVDFLPSPVDVPPAKAIDANNKEISIKASDDANFIGLAFKVATDPF 319 Query: 205 KGVVCFIRIFEGSLKLNDKIRFARSNS---VYQIVELGIKNPFFEKQDVLKAGEIGWFSA 261 G + FIR++ G LK ++ R N V ++V++ +N + D ++AG+I Sbjct: 320 VGRLTFIRVYAGVLKSGSYVKNVRKNKKERVSRLVKMHAQNR--NEIDEIRAGDI----C 373 Query: 262 GIKKLRDVTVGDTIVHAEDTTTPPLPGYKKVLPMIYCGLYPIDNNDYQNLKMAMEKIILS 321 + L+D T G+T+ +D L + P+I + P D + + +A+ K+ Sbjct: 374 AVIGLKDTTTGETLT--DDKLDVQLEAMQFAEPVISLAVEPKTKADQEKMSIALSKLAEE 431 Query: 322 DVALEY--EYETSQALGFGVRCGFLGLLHMDVIKERLEREYNLKLISAPPSVRYKVLLTN 379 D + + ET Q + G +G LH+D++ +R++RE+ +++ P V ++ + Sbjct: 432 DPTFKTFSDPETGQTIIAG-----MGELHLDILVDRMKREFKVEVNIGAPQVSFRETFKS 486 Query: 380 GEELE 384 E+E Sbjct: 487 TSEVE 491 >ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplasma genitalium G-37] Length = 394 Score = 72.4 bits (176), Expect = 1e-014, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 26/267 (9%) Query: 8 NFSIIAHIDHGKSTLSDRLIERSIGFEKRLLQAQM--LDTMAIERERGITIKLNAVQLKM 65 N I HIDHGK+TL+ I + E + + +D E+ RGITI N+ ++ Sbjct: 14 NVGTIGHIDHGKTTLT-AAICTVLAKEGKSAATRYDEIDKAPEEKARGITI--NSAHVEY 70 Query: 66 AQGNQQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYLALENNL 125 + + Y VD PGH D+ + A +G +L+V AT + QT + LA + + Sbjct: 71 SSDKRHYAH--VDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHILLARQVGV 128 Query: 126 -EIIPVINKVDMESAD--VEKTKQAFHQLL---GVDPNTIPLV--SAKTGL--------G 169 +++ +NK D+ S + E + LL G D P++ SA L Sbjct: 129 PKMVVFLNKCDIASDEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALEGDPKWEAK 188 Query: 170 IDQLITTIIEKVPPPKGDESKPLKALLFDSYYDPYKGVVCFIRIFEGSLKLNDKIRFARS 229 I LI + E +P P + KP + D+ +G V R+ G LK+ ++ Sbjct: 189 IHDLIKAVDEWIPTPTREVDKPFLLAIEDTMTITGRGTVVTGRVERGELKVGQEVEIVGL 248 Query: 230 NSVYQIVELGIKNPFFEKQ-DVLKAGE 255 + + V GI+ F+K+ D AG+ Sbjct: 249 KPIRKAVVTGIE--MFKKELDSAMAGD 273 >ref|NP_072804.1| translation initiation factor 2 (infB) [Mycoplasma genitalium G-37] Length = 619 Score = 60.8 bits (146), Expect = 3e-011, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 23/174 (13%) Query: 10 SIIAHIDHGKSTLSDRLIERSIGFEKRLLQAQMLDTMAIERERGITIKLNAVQLKMAQGN 69 +I+ H+DHGK++L D + + ++ + GIT K+ A Q+K Q N Sbjct: 126 TIMGHVDHGKTSLLDTIRKTNV---------------TAKEFGGITQKIGAYQVKNHQ-N 169 Query: 70 QQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYLALENNLEIIP 129 + F +DTPGH FT +R + V+L+V A GI+ QT A N II Sbjct: 170 KTITF--IDTPGHEAFTLMRARGAKVTDIVVLVVAADDGIKKQTEEAISHAKSANTPIIV 227 Query: 130 VINKVDMESADVEKTKQAFHQLLGV-----DPNTIPLVSAKTGLGIDQLITTII 178 INK+D +A+ + Q ++ V + SA TG GI++L+ I+ Sbjct: 228 FINKMDKPTANPDLVIQQLNKFDLVPEAWGGKTIFVMGSALTGQGINELLDNIL 281 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508019|ref|NP_109968.1| similar to single stranded RNA(DNA) processing enzymes [Mycoplasma pneumoniae M129] (569 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072801.1| hypothetical protein MG139 [Mycoplasma genitali... 1026 0.0 ref|NP_073094.1| hypothetical protein MG423 [Mycoplasma genitali... 135 1e-033 >ref|NP_072801.1| hypothetical protein MG139 [Mycoplasma genitalium G-37] Length = 569 Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/569 (85%), Positives = 531/569 (93%) Query: 1 MIKDFDPSEFVGKTPTKIFAFGGIQEVGKNMXXXXXXXXXXXXXXXXKFASDDLLGIDGI 60 MIKDF+P +F+GK PTKI+AFGGIQEVGKNM KFASDDLLGI+GI Sbjct: 1 MIKDFNPGDFIGKKPTKIYAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGINGI 60 Query: 61 IPSFEYLIENQAKVKALFITHGHEDHIGGVPYLLKQVDVPVIYAPRIAASLILKKVNEHK 120 IPSFE+LIENQ+KVKALFITHGHEDHIGGVPYLLKQVD+PVIYAPRIAASLILKKVNEHK Sbjct: 61 IPSFEHLIENQSKVKALFITHGHEDHIGGVPYLLKQVDIPVIYAPRIAASLILKKVNEHK 120 Query: 121 DAKLNKVVVYDDFSNFETKHFKIDFYRVNHSIPDAFGVCVQTPNGNIVESGDFRFDFAAG 180 DAKLNK+V +DDFS F+TKHFKIDFYRVNHSIPDAFG+CVQTPNGNIV+SGD+RFDFAAG Sbjct: 121 DAKLNKIVTFDDFSEFQTKHFKIDFYRVNHSIPDAFGICVQTPNGNIVQSGDYRFDFAAG 180 Query: 181 GEMLDVHKVVKIAERNVHVFMCETTNAEIPGFSQSEKLIYRNINKIIKEARGRVILTTFA 240 EMLDVHKVVKIAERNVHVFM E+TNAE+PGFSQSEKLIYRNI KI+KEARGRVILTTFA Sbjct: 181 SEMLDVHKVVKIAERNVHVFMSESTNAEVPGFSQSEKLIYRNIQKILKEARGRVILTTFA 240 Query: 241 SNITRINEIIEIAVNNKRKVCLLGKSMDVNVNISRKIGLMDIDSNDIVEVRDIKNYPDRS 300 SNITRINEIIEIA+NNKRK+CLLGKSMDVNVNISRKIGLM IDSNDIVEVRDIKNYPDR+ Sbjct: 241 SNITRINEIIEIALNNKRKICLLGKSMDVNVNISRKIGLMAIDSNDIVEVRDIKNYPDRN 300 Query: 301 ILILCTGSQGEDSAALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKYG 360 ILILCTGSQGE++AALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSK+G Sbjct: 301 ILILCTGSQGEEAAALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKFG 360 Query: 361 VTIFENSPNMKLHASGHATQQELQLMLNLVFPRYLIPIHGEYKMMRTIKNIAQECGINGD 420 V I+ENS +KLHASGHATQQELQLMLNL+FP+YLIPIHGE+KMMRTIKNIA ECGI + Sbjct: 361 VAIYENSSQLKLHASGHATQQELQLMLNLMFPKYLIPIHGEFKMMRTIKNIANECGIKSE 420 Query: 421 DVGLLANGQVMYLIDGKLYYSGEVINADPIYIESRNSSPDLARVIKQRQILSREGMFAVI 480 DV LL+NGQVMYLID +LYYS E+INADPIYIES NSSPDLAR+IKQRQILSR+GMFAVI Sbjct: 421 DVALLSNGQVMYLIDEELYYSNEIINADPIYIESHNSSPDLARIIKQRQILSRDGMFAVI 480 Query: 481 VVFDKNNNILGMPTLITRGCFFALDSSPLMTKITHSIKRGLENVIQNKRFNTREQMIKEL 540 VVFDKNNNI+G+PTLITRGCFFALDS+PLMTKI HS+KR LE+VIQ+K+FN+ EQ+ KEL Sbjct: 481 VVFDKNNNIIGIPTLITRGCFFALDSNPLMTKIAHSVKRTLESVIQSKKFNSHEQLTKEL 540 Query: 541 KRVCKETVSYFIWKNKSRNPLISTVLSWV 569 KRVCKETVSYFIWKNK+RNPLISTVLSW+ Sbjct: 541 KRVCKETVSYFIWKNKNRNPLISTVLSWI 569 >ref|NP_073094.1| hypothetical protein MG423 [Mycoplasma genitalium G-37] Length = 561 Score = 135 bits (339), Expect = 1e-033, Method: Compositional matrix adjust. Identities = 134/566 (23%), Positives = 258/566 (45%), Gaps = 25/566 (4%) Query: 17 KIFAFGGIQEVGKNMXXXXXXXXXXXXXXXXKFASDDLLGIDGIIPSFEYLIENQAKVKA 76 K FA GG E GKN + +LG+ IIP F ++ ENQA+VK Sbjct: 5 KFFALGGQDERGKNCYVLEIDNDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQARVKG 64 Query: 77 LFITHGHEDHIGGVPYLLKQVDVPVIYAPRIAASLILKKVNEHK-DAKLNKVVVYD--DF 133 +FI + +++G + +L V IY I AS+I K+NE+K + +K+ +++ Sbjct: 65 IFIGNAITENLGSLEFLFHTVGFFPIYTSSIGASIIKSKINENKLNIARDKLEIHELKPL 124 Query: 134 SNFETKHFKIDFYRVNHSIPDAFGVCVQTPNGNIVESGDFRF----DFAAGGEMLDVHKV 189 E + I ++V+ S+P +FG + T NG IV DF + A ++ + + Sbjct: 125 ETIEISNHSITPFKVSSSLPSSFGFALNTDNGYIVFIDDFIVLNDKNIAFENQLNQI--I 182 Query: 190 VKIAERNVHVFMCETTNAEIPGFSQSEKLIYRNINKIIKEARGRVILTTFASNITRINEI 249 K+++ + + GF+ + +N+II A+GR+ + + SN + + Sbjct: 183 PKLSDNTLLLITGVGLVGRNSGFTTPKHKSLEQLNRIITPAKGRIFVACYDSNAYSVMTL 242 Query: 250 IEIAVNNKRKVCLLGKSMDVNVNISRKIGLMDIDSNDIVEVRDIKNYPDRSILILCTGSQ 309 +IA R + +S N + L + + + + +I N + SI++L T Sbjct: 243 AQIARMQNRPFIIYSQSFVHLFNTIVRQKLFNNTHLNTISIEEINNSTN-SIVVL-TSPP 300 Query: 310 GEDSAALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKYGVTIFENSPN 369 + A L + + + + +DT I + + G +L+++++ V+ + Sbjct: 301 DKLYAKLFKIGMNEDERIRYRKSDTFIFMTPKVAGYEEIEAQILDDIARNEVSYYNLGRE 360 Query: 370 MKLHASGHATQQELQLMLNLVFPRYLIPIHGEYKMMRTIKNIAQECGINGDDVGLLANGQ 429 + S A+ ++++ +++ + P+Y+IP G Y+ + ++ G + + +L NG+ Sbjct: 361 I---LSIQASDEDMKFLVSSLKPKYIIPTGGLYRDFINFTMVLKQAGAEQNQILILFNGE 417 Query: 430 VMYLIDGKLYYSGEVINADPIYIESRNSSPDLARVIKQRQILSREGMFAVIVVFD-KNNN 488 V+ + + KL + +P ++S A ++ +R +S G+ +I+ FD K + Sbjct: 418 VLTIENKKLDSKKNELKLNPKCVDSAGLQEIGASIMFERDQMSESGVVIIIIYFDQKKSE 477 Query: 489 ILGMPTLITRGCFFAL-DSSPLMTKITHSIKRGLENVIQNKRFNTREQMI-----KELKR 542 L T G + + L TK+ IK+ + ++ K F T ++ I KELK Sbjct: 478 FLNEITYSFLGVSLDVPEKDKLKTKMEELIKKQINDI---KDFTTIKKRIGKEISKELKV 534 Query: 543 VCKETVSYFIWKNKSRNPLI-STVLS 567 K V K S+ PLI ST++S Sbjct: 535 SIKRAVMNLFTKMTSKAPLILSTIIS 560 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508020|ref|NP_109969.1| hypothetical protein MPN281 [Mycoplasma pneumoniae M129] (377 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 372 e-105 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 277 1e-076 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 372 bits (955), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/361 (51%), Positives = 246/361 (68%), Gaps = 12/361 (3%) Query: 22 ACGARGKFDQFDDGXXXXXXXXXXXXXXXXXQTIIEKYNIVKSGKDYPIEITQIAGGYDG 81 AC +FDQ DDG +T+++KYN K DYPIEI QIAGGYDG Sbjct: 22 ACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYNDTKDPGDYPIEIVQIAGGYDG 81 Query: 82 GRTDLQTRVSVKDKTNFYNLILNYPDLVSVLARSGMELLFDKVNVDKLEPNFLKFNEQIS 141 G+ D+QT+VS KDK NFYNLILNYP++VS L+RS M L FD VNVDKL PNFL FN +I Sbjct: 82 GKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALNFDGVNVDKLHPNFLSFNSRIG 141 Query: 142 GVAKSGNYGIPVSLSTDILVLNGPVLHYILNSAKKE--EANSQVKSQIKTSQIQAKGSLT 199 G+ G Y IP+S+STD++V+NGPVLHYILNSA+KE ++ V++ + + + KG+L Sbjct: 142 GIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTPTSTTVQATVSSRSAEKKGTLE 201 Query: 200 IDTDENTKSLWEKIQNSAKANG-ETNQKGRKAAKSNKTALVQLKNGAXXXXXXXXXXXXX 258 I D T LW+ IQ +A+ N ET ++ ++ +S+ ++ G Sbjct: 202 IANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSSSTTSTTG-------ETKDTTK 254 Query: 259 SDDKVKQTWGDYVEKDDGLKNYTFRASVFENWHDFLDFSTRVAKSFTEKVSNITNKKGTD 318 SD+K+K+ WG+Y E D GLKN+TF+AS+FENW++ LDF+TR+A SF EKV NITNK G D Sbjct: 255 SDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDFATRIANSFPEKVKNITNKTGLD 314 Query: 319 IQGVLGVDSSPNVLFASVFAAGGGNYENFFYKL--KDGRADFSNFKNKGSSYQNLQSVFK 376 +QGVLGVDSS N L+A+VFAAG NY+NFF+ + + G AD+SNF NK SSYQNL+SV+ Sbjct: 315 LQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYADYSNFLNKDSSYQNLESVYN 374 Query: 377 D 377 D Sbjct: 375 D 375 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 277 bits (709), Expect = 1e-076, Method: Compositional matrix adjust. Identities = 159/378 (42%), Positives = 221/378 (58%), Gaps = 25/378 (6%) Query: 1 MKFKYGTXXXXXXXXXXXXXAACGARGKFDQFDDGXXXXXXXXXXXXXXXXXQTIIEKYN 60 MKFK AC A +FDQ DDG TII KYN Sbjct: 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLATVTSASASGSLT-TIISKYN 59 Query: 61 IVKSGKDYPIEITQI--AGGYDGGRTDLQTRVSVKDKTNFYNLILNYPDLVSVLARSGME 118 K DYP+E+ + G Y G+ DLQ ++ KDK NFYNL NY D+VS+L+RS ME Sbjct: 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query: 119 LLFDKVNVDKLEPNFLKFNEQISGVAKSGNYGIPVSLSTDILVLNGPVLHYILNSAKKEE 178 L FD V+ +P+FL FN IS V + Y +P ++S ++LVLNGPVLHYIL+SAKK + Sbjct: 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKK-D 178 Query: 179 ANSQVKSQIKTSQIQAKGSLTIDTDENTKSLWEKIQNSAKANGETNQKGRKAAKSNKTAL 238 +N+ + + S KG++ + +D T SLW K++ +AK N +TN+ + KSN + Sbjct: 179 SNTTLSTH-SASNNSNKGTMVVASDSETSSLWTKLEAAAKMNAQTNE--TQVLKSNSSES 235 Query: 239 VQLKNGAXXXXXXXXXXXXXSDDKVKQTWGDYVEKDDGLKNYTFRASVFENWHDFLDFST 298 Q + SD ++K+ WGDY E D GLKNYTF+ASVF NW D DF+T Sbjct: 236 NQTQ---------------ASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLNDFAT 280 Query: 299 RVAKSFTEKVSNITNKKGTDIQGVLGVDSSPNVLFASVFAAGGGNYENFFYKLKDGRADF 358 R+AKSFT+ + T KKG ++Q V G+ S N L+ ++FA+G +Y NF + +K+ R +F Sbjct: 281 RIAKSFTKLQT--TTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRINF 338 Query: 359 SNFKNKGSS-YQNLQSVF 375 SNF NK S+ +QNL+++F Sbjct: 339 SNFFNKSSTAFQNLKTIF 356 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508021|ref|NP_109970.1| hypothetical protein MPN282 [Mycoplasma pneumoniae M129] (166 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 159 2e-041 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 91 8e-021 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 159 bits (402), Expect = 2e-041, Method: Compositional matrix adjust. Identities = 84/166 (50%), Positives = 107/166 (64%), Gaps = 20/166 (12%) Query: 2 KTIYIYKGSIPEDKKKGDNAIWVTEKKIIDALEKAANSN-GESTQSNPKTIALQAAXXXX 60 K I +YKGSIP K++G +AI ++ +I+ LE+A N + ++S I Sbjct: 462 KDINLYKGSIPSGKQQGVDAILISNPNLINILEQAKQKNTAQGSESTTNKI--------- 512 Query: 61 XXXXXXXXXXIGYTTTGYVNADGKHIFDTDRINNERFDRKIIIGATLETLDQSSTLQSGE 120 IGYTTT VN D ++IF ++NNE+F RKII+ AT ETLDQS TLQS E Sbjct: 513 ----------IGYTTTANVNVDNQNIFSVSKLNNEQFQRKIIVNATEETLDQSQTLQSNE 562 Query: 121 AIVLPAPGKYKSSDQKTVMTAQGPKIIGIHANAKENEETQKFVNWF 166 +IVLP PGKYKS+D+ VM QGP +IGIHAN KEN ET+KFVNWF Sbjct: 563 SIVLPMPGKYKSTDKNKVMITQGPNLIGIHANEKENIETKKFVNWF 608 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 90.5 bits (223), Expect = 8e-021, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 28/170 (16%) Query: 2 KTIYIYKGSIPEDKKKGDNAIWVTEKKIIDALEK-----AANSNGESTQSNPKTIALQAA 56 K + +Y+ + +K+ G +A+ + ++ +I+ L+ +A S E++Q+ L Sbjct: 449 KQVSLYEKQVDSNKQIGVDALLIKDETLINHLKSLKSQVSAKSASETSQTKQNKTFL--- 505 Query: 57 XXXXXXXXXXXXXXIGYTTTGYVNADGKHIFDTDRINNERFDRKIIIGATLETLDQSSTL 116 +TT VNAD K IFD ++N + KIII AT T + STL Sbjct: 506 ---------------AFTT---VNADQKAIFDVGKLNGKT--AKIIINATETTNAKISTL 545 Query: 117 QSGEAIVLPAPGKYKSSDQKTVMTAQGPKIIGIHANAKENEETQKFVNWF 166 Q EAIVL AP +++S+D + QGP +IGIHAN +E+ ET+KFVNW+ Sbjct: 546 QEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFVNWY 595 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508022|ref|NP_109971.1| hypothetical protein MPN283 [Mycoplasma pneumoniae M129] (115 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508023|ref|NP_109972.1| hypothetical protein MPN284 [Mycoplasma pneumoniae M129] (794 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 449 e-128 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 353 3e-099 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 449 bits (1155), Expect = e-128, Method: Compositional matrix adjust. Identities = 243/448 (54%), Positives = 312/448 (69%), Gaps = 12/448 (2%) Query: 1 MKLKYGTIIFSGLLGVSAILAACGARGKFDQVDDGKIVLASSLTSKGAANALQTIVKKYN 60 MKLK + + G S +L AC +FDQVDDGKI LASSLTSK AA AL+T+VKKYN Sbjct: 1 MKLKGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYN 60 Query: 61 EVKNIDDYPIEIIQIAGGYDGGRGNLQTKLSVKDKNSFYNLILNYPDVVSVLGRVGMELP 120 + K+ DYPIEI+QIAGGYDGG+ ++QTK+S KDKN+FYNLILNYP++VS L R M L Sbjct: 61 DTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALN 120 Query: 121 FDKVRTDKLSPRFLDFNKRISAISKQGIYGIPVSLSTEVLVLNGPVLHYILSSAK--GSS 178 FD V DKL P FL FN RI I GIY IP+S+ST+++V+NGPVLHYIL+SA+ G+ Sbjct: 121 FDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTP 180 Query: 179 GKTQVSQTSSGSNQQKTLQKPLKIXXXXXXXXXLWTQIEXXXXXXXXXXXXXXXXXXXTD 238 T V T S + +K + L+I LW I+ + Sbjct: 181 TSTTVQATVSSRSAEK--KGTLEI-ANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSS 237 Query: 239 QSTQTHNDQG---DASESDKKIKESWGDYEEVDGGLKGFTFKASIFDNWHDLLDFSTRAA 295 S+ T + G D ++SD KIKE WG+Y+EVDGGLK FTFKASIF+NW++ LDF+TR A Sbjct: 238 SSSSTTSTTGETKDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDFATRIA 297 Query: 296 KSF-KKIKDNNTKKGTDIQGILGVDSSANSLFTSVFAAGNGDYDNFFYKV--ANGRADFS 352 SF +K+K+ K G D+QG+LGVDSS+N+L+ +VFAAG +YDNFF+ + G AD+S Sbjct: 298 NSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYADYS 357 Query: 353 NFKNRGSSFQNLQSVFNDYKGLIDQNGLFVNKGGSYSSNFQKFHQLAYSISSTSGFYYSF 412 NF N+ SS+QNL+SV+ND+ LI NGLFVN+GGSYSSNF+KFHQLA+S+SS+ G+ Y F Sbjct: 358 NFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSGGYSYYF 417 Query: 413 AGNSAKRLKFGDNSFIEYPQYTVPIKAP 440 A ++AKRLKF N IEYP +T I+AP Sbjct: 418 AKDNAKRLKFS-NYAIEYPSFTQTIQAP 444 Score = 273 bits (698), Expect = 5e-075, Method: Compositional matrix adjust. Identities = 158/310 (50%), Positives = 188/310 (60%), Gaps = 38/310 (12%) Query: 509 IEIYKNKIPDGKNAGKDAILIKDNNLIKQLEDAAKKNGAESNQKQGGESNVQKEQIIGYT 568 I +YK IP GK G DAILI + NLI LE A +KN A QG ES K IIGYT Sbjct: 464 INLYKGSIPSGKQQGVDAILISNPNLINILEQAKQKNTA-----QGSESTTNK--IIGYT 516 Query: 569 TTGNVREDGNHIFRVDKINDEQYDRKIIVGVTVETLEQSSTLQSEEAIVLAAPGKYKSTD 628 TT NV D +IF V K+N+EQ+ RKIIV T ETL+QS TLQS E+IVL PGKYKSTD Sbjct: 517 TTANVNVDNQNIFSVSKLNNEQFQRKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTD 576 Query: 629 KKKVTITQGPNIIGIHANEKENAETQKFVDWFLNTEV-DWPAKENSSNKQDQQNSTKKQT 687 K KV ITQGPN+IGIHANEKEN ET+KFV+WFLN + DW NS+N+Q + T K T Sbjct: 577 KNKVMITQGPNLIGIHANEKENIETKKFVNWFLNQSITDW----NSNNQQKNSDQTTK-T 631 Query: 688 AAEFFVESASYILPLXXXXXXXX-------------------------XXXXXXXXXXXX 722 AAE+F + ASYILPL Sbjct: 632 AAEYFTDQASYILPLKEKFNKSSDLELKGSSSSSNLTTSSASASLLISNNSSTASSPAPK 691 Query: 723 XXXXXXXTYAEKALELFQQISKDEIVSYSDPSDFRSGKFRDGIGSNFNAAVSSKADFNKF 782 T+ KALELFQQ + +EI+ +SDPSDFR+G FR+ I S+FNAAV+SK FN+F Sbjct: 692 KTNNNSNTFTAKALELFQQAANNEIIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQF 751 Query: 783 VKGFIATLGS 792 V+ FI +LGS Sbjct: 752 VQNFINSLGS 761 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 353 bits (907), Expect = 3e-099, Method: Compositional matrix adjust. Identities = 196/428 (45%), Positives = 268/428 (62%), Gaps = 19/428 (4%) Query: 1 MKLKYGTIIFSGLLGVSAILAACGARGKFDQVDDGKIVLASSLTSKGAANALQTIVKKYN 60 MK K + S L ++ AC A +FDQVDDGKI LA+ +TS A+ +L TI+ KYN Sbjct: 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKYN 59 Query: 61 EVKNIDDYPIEIIQI--AGGYDGGRGNLQTKLSVKDKNSFYNLILNYPDVVSVLGRVGME 118 K+ +DYP+E++ + G Y G+ +LQ KL KDKN+FYNL NY DVVS+L R ME Sbjct: 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query: 119 LPFDKVRTDKLSPRFLDFNKRISAISKQGIYGIPVSLSTEVLVLNGPVLHYILSSAKGSS 178 L FD V T P FL FN IS ++ IY +P ++S EVLVLNGPVLHYILSSAK S Sbjct: 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDS 179 Query: 179 GKTQVSQTSSGSNQQKTLQKPLKIXXXXXXXXXLWTQIEXXXXXXXXXXXXXXXXXXXTD 238 T + ++S ++ + T+ + LWT++E Sbjct: 180 NTTLSTHSASNNSNKGTM-----VVASDSETSSLWTKLEAAAKMNAQTNETQVL------ 228 Query: 239 QSTQTHNDQGDASESDKKIKESWGDYEEVDGGLKGFTFKASIFDNWHDLLDFSTRAAKSF 298 +S + ++Q A SD +IK+ WGDY+EVDGGLK +TFKAS+F+NW DL DF+TR AKSF Sbjct: 229 KSNSSESNQTQA--SDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLNDFATRIAKSF 286 Query: 299 KKIKDNNTKKGTDIQGILGVDSSANSLFTSVFAAGNGDYDNFFYKVANGRADFSNFKNRG 358 K++ TKKG ++Q + G+ S N+L+T++FA+G DY+NF + + N R +FSNF N+ Sbjct: 287 TKLQ-TTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRINFSNFFNKS 345 Query: 359 SS-FQNLQSVFNDYKGLIDQNGLFVNKGGSYSSN-FQKFHQLAYSISSTSGFYYSFAGNS 416 S+ FQNL+++FN +K LIDQNGL N + N + KF+QLA+ SST+ F YSFA +S Sbjct: 346 STAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTARFPYSFASDS 405 Query: 417 AKRLKFGD 424 KRL D Sbjct: 406 VKRLIVND 413 Score = 159 bits (402), Expect = 1e-040, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 156/295 (52%), Gaps = 48/295 (16%) Query: 505 NSTTIEIYKNKIPDGKNAGKDAILIKDNNLIKQLED----AAKKNGAESNQKQGGESNVQ 560 NS + +Y+ ++ K G DA+LIKD LI L+ + K+ +E++Q + Q Sbjct: 447 NSKQVSLYEKQVDSNKQIGVDALLIKDETLINHLKSLKSQVSAKSASETSQTK------Q 500 Query: 561 KEQIIGYTTTGNVREDGNHIFRVDKINDEQYDRKIIVGVTVETLEQSSTLQSEEAIVLAA 620 + + +TT V D IF V K+N + KII+ T T + STLQ +EAIVL A Sbjct: 501 NKTFLAFTT---VNADQKAIFDVGKLNGKT--AKIIINATETTNAKISTLQEKEAIVLKA 555 Query: 621 PGKYKSTDKKKVTITQGPNIIGIHANEKENAETQKFVDWFLNTEVDWPAKENSSNKQDQQ 680 P +++STD + + QGP++IGIHANE+E+ ET+KFV+W+LNT+V W ++ Sbjct: 556 PQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFVNWYLNTKVQW-----------EE 604 Query: 681 NSTKKQTAAEFFVESASYILPLXXXXXXXXXXXXXXXXXXXXXXXXXXXTYAEKALELFQ 740 NS K T AE+ + ASY+LP +Y E Sbjct: 605 NSIK--TPAEYVADKASYLLPF-------------------KNRLNNTNSYNEFVKTAVS 643 Query: 741 QISKDEIVSYSDPSDFRSGKFRDGIGSNFNAAVSSKA-DFNKFVKGFIATLGSEI 794 Q + + +++P+DF S K RDG+ SN NAA+++ + DF+ F+ LGS++ Sbjct: 644 QFADKNVTKFAEPADFLSNKVRDGVKSNLNAAINNHSIDFDSFINDLTDYLGSDV 698 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508024|ref|NP_109973.1| type I restriction enzyme ecokI specificity protein [Mycoplasma pneumoniae M129] (306 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508025|ref|NP_109974.1| hypothetical protein MPN286 [Mycoplasma pneumoniae M129] (465 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 142 6e-036 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 142 bits (359), Expect = 6e-036, Method: Compositional matrix adjust. Identities = 120/368 (32%), Positives = 160/368 (43%), Gaps = 75/368 (20%) Query: 1 MLDYIPWIGNGHRYGNDHRXXXXXXXXXXXXXXXXXXASGTEPASTFSNVGVGLKANVXX 60 LD++PWIGNG + N AS + P TFSN+ VG+K+ + Sbjct: 764 FLDFLPWIGNGKPFSNSPSPSTS--------------ASSSTPLPTFSNINVGVKSMITQ 809 Query: 61 XXXXXXXXXXXKDIPKWPTLDQANLQLWTGAGWRNDKASSGQSDENHTKFXXXXXXXXXX 120 K+ +W + + +WTGAG+R A+ +N F Sbjct: 810 HLN--------KENTRWVFIPNFSPDIWTGAGYRVQSANQ----KNGIPFEQVKP----- 852 Query: 121 XXXXXXXXXXXPDSLKQDKVDKSGDSVTVAETTSGDXXXXXXXXXXXXXXXADWPNALSF 180 S D + D V + +DW NAL+F Sbjct: 853 -------------SNNSTPFDPNSDDNKVTPSGGSSKPTTYPALPNSISPTSDWINALTF 899 Query: 181 TNKNNXXXXXXXXXXXXGSIPVLVNKSGQDDSNKFQATDQKWSYTELKSDQTKLNLPAYG 240 TNKNN G+IPVL+NKSG + + ++QKW TE NLP +G Sbjct: 900 TNKNNPQRNQLLLRSLLGTIPVLINKSGDSNDQFNKDSEQKWDKTETNEG----NLPGFG 955 Query: 241 EVNGLLNPALVEVYGLXXXXXXXXXXXXXXXXXXXXXXXXXYARPGIGFKLPSTDSESSK 300 EVNGL N AL+ YG P IGFK + S SS Sbjct: 956 EVNGLYNAALLHTYGFFGTNTNS-------------------TDPKIGFK--ADSSSSSS 994 Query: 301 ATLITPGLAWTAQDVGNLVV-SGTSLSFQLGGWLVTFTDFIKPRSGYLGLQLTGLDANDS 359 +TL+ GL WT+QDVGNLVV + TS FQLGGW +TFTDFI+PR+GYLG+ L+ L Sbjct: 995 STLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYLGITLSSL----- 1049 Query: 360 DQRELIWA 367 + +IWA Sbjct: 1050 QDQTIIWA 1057 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508026|ref|NP_109975.1| hypothetical protein MPN287 [Mycoplasma pneumoniae M129] (118 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508027|ref|NP_109976.1| hypothetical protein MPN288 [Mycoplasma pneumoniae M129] (787 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 704 0.0 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 489 e-140 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/819 (49%), Positives = 510/819 (62%), Gaps = 92/819 (11%) Query: 1 MKFK-YCAIFFSGFLGLSAILAACGARGKFDQVDDGKIKLAFSLTSKSASNALQAIVKKY 59 MK K + A+ S F G S +L AC +FDQVDDGKIKLA SLTSK A+ AL+ +VKKY Sbjct: 1 MKLKGFLAVGVSVF-GFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKY 59 Query: 60 NEVKKPGDYHIEITQIAGGYDGGRSDLQTRVNVKDTTNFYNLILNYPDLVSTLGRVGMEL 119 N+ K PGDY IEI QIAGGYDGG+ D+QT+V+ KD NFYNLILNYP++VSTL R M L Sbjct: 60 NDTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMAL 119 Query: 120 LFDKVNTDKLSDRFLDFNKRISAISKPGIYGIPVSLSTEVLSINGPVLHYILKSAKGDSD 179 FD VN DKL FL FN RI I GIY IP+S+ST+++ INGPVLHYIL SA+ + Sbjct: 120 NFDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGT 179 Query: 180 NVKVSQRTGETTQKSKVTNPLKINTQNDPATKDLWEKIEASAKANGXXXXXXXXXXXXXX 239 + + +++ ++ L+I ND T LW+ I+ +A+ N Sbjct: 180 PTSTTVQATVSSRSAEKKGTLEI--ANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSS 237 Query: 240 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNKIKESWGEYQEVDGGLKNFEFKASIFENWHD 299 NKIKE WGEYQEVDGGLKNF FKASIFENW++ Sbjct: 238 SSSSTTSTTGETKDTTKSD---------NKIKEFWGEYQEVDGGLKNFTFKASIFENWNE 288 Query: 300 LLDFSTRVAKSFTN-VKGKDIKKGTDIQGVLGVDSTPNSLFTSVFAAGGGDYNNFFYKIE 358 LDF+TR+A SF VK K G D+QGVLGVDS+ N+L+ +VFAAG +Y+NFF+ I+ Sbjct: 289 TLDFATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNID 348 Query: 359 --NGRADFSNFKNKGTSYQNLQKVFGDFKGLIDKNGIFVNKGGSYSSNFQKFHQLAYSIS 416 G AD+SNF NK +SYQNL+ V+ DF LI NG+FVN+GGSYSSNF+KFHQLA+S+S Sbjct: 349 KRTGYADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVS 408 Query: 417 STSGFFYSFAGNSAKRLKFGDNFIEFPRFTQEIKAPSTENGGQSNLLGTFXXXXXXXXXX 476 S+ G+ Y FA ++AKRLKF + IE+P FTQ I+AP++ +SNLLGTF Sbjct: 409 SSGGYSYYFAKDNAKRLKFSNYAIEYPSFTQTIQAPNSSET-ESNLLGTFKLS------- 460 Query: 477 XXXTNRKEDGAQNQGKKESDKKTIYLYKSQIPSDKTEGENAILIKEQNVINQLEQAAKKD 536 +K I LYK IPS K +G +AILI N+IN LEQA +K+ Sbjct: 461 --------------------EKDINLYKGSIPSGKQQGVDAILISNPNLINILEQAKQKN 500 Query: 537 --EKGETVTNKVASLETKAANAKKDSSKTIIGYTTTDNVHEDGKNIFKINKLKTEDYDRK 594 + E+ TNK IIGYTTT NV+ D +NIF ++KL E + RK Sbjct: 501 TAQGSESTTNK------------------IIGYTTTANVNVDNQNIFSVSKLNNEQFQRK 542 Query: 595 IIVGATEEVLEQSSTLQSDEAIVLPAPGKYQSGDAKKVTITQGPNIIGIHANEKENAETQ 654 IIV ATEE L+QS TLQS+E+IVLP PGKY+S D KV ITQGPN+IGIHANEKEN ET+ Sbjct: 543 IIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIGIHANEKENIETK 602 Query: 655 KFVNWFLNNT-ESWEVKN-GKDSSTKQQTAAEFFAESASYILPLKEIFDKD--------- 703 KFVNWFLN + W N K+S +TAAE+F + ASYILPLKE F+K Sbjct: 603 KFVNWFLNQSITDWNSNNQQKNSDQTTKTAAEYFTDQASYILPLKEKFNKSSDLELKGSS 662 Query: 704 -----------------NKKATENKDNNTSNKKQANTYAEKALDLFQQISKGDIVSYSDP 746 N +T + +NT+ KAL+LFQQ + +I+ +SDP Sbjct: 663 SSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNTFTAKALELFQQAANNEIIPFSDP 722 Query: 747 SDFRSGKFRDGIGSNFNAAVSSKADFDRFVKGFIATLGS 785 SDFR+G FR+ I S+FNAAV+SK F++FV+ FI +LGS Sbjct: 723 SDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLGS 761 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 489 bits (1259), Expect = e-140, Method: Compositional matrix adjust. Identities = 318/796 (39%), Positives = 437/796 (54%), Gaps = 107/796 (13%) Query: 1 MKFKYCAIFF--SGFLGLSAILA-ACGARGKFDQVDDGKIKLAFSLTSKSASNALQAIVK 57 MKFK +FF S LG A+ AC A +FDQVDDGKIKLA ++TS SAS +L I+ Sbjct: 1 MKFK---LFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLA-TVTSASASGSLTTIIS 56 Query: 58 KYNEVKKPGDYHIEITQI--AGGYDGGRSDLQTRVNVKDTTNFYNLILNYPDLVSTLGRV 115 KYN K P DY +E+ + G Y G+ DLQ ++ KD NFYNL NY D+VS L R Sbjct: 57 KYNSQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRS 116 Query: 116 GMELLFDKVNTDKLSDRFLDFNKRISAISKPGIYGIPVSLSTEVLSINGPVLHYILKSAK 175 MEL FD V+T FL FN IS ++ IY +P ++S EVL +NGPVLHYIL SAK Sbjct: 117 QMELSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAK 176 Query: 176 GDSDNVKVSQRTGETTQKSKVTNPLKINTQNDPATKDLWEKIEASAKANGXXXXXXXXXX 235 DS+ T T S +N + +D T LW K+EA+AK N Sbjct: 177 KDSN------TTLSTHSASNNSNKGTMVVASDSETSSLWTKLEAAAKMNAQTNETQVLKS 230 Query: 236 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKIKESWGEYQEVDGGLKNFEFKASIFE 295 +IK+ WG+YQEVDGGLKN+ FKAS+F Sbjct: 231 NSSESNQTQASDT--------------------EIKKIWGDYQEVDGGLKNYTFKASVFN 270 Query: 296 NWHDLLDFSTRVAKSFTNVKGKDIKKGTDIQGVLGVDSTPNSLFTSVFAAGGGDYNNFFY 355 NW DL DF+TR+AKSFT ++ KKG ++Q V G+ S N+L+T++FA+G DYNNF + Sbjct: 271 NWKDLNDFATRIAKSFTKLQTT-TKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLF 329 Query: 356 KIENGRADFSNFKNK-GTSYQNLQKVFGDFKGLIDKNGIFVNKGGSYSSN-FQKFHQLAY 413 I+N R +FSNF NK T++QNL+ +F FK LID+NG+ N + N + KF+QLA+ Sbjct: 330 NIKNQRINFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAF 389 Query: 414 SISSTSGFFYSFAGNSAKRLKFGDNFIEFPRFTQEIKA-PSTENGGQSNLLGTFXXXXXX 472 SST+ F YSFA +S KRL D IE + S+++ SNL+GT Sbjct: 390 YTSSTARFPYSFASDSVKRLIVNDKTIENKNNKSVFEVNLSSDSDNNSNLIGTVSL---- 445 Query: 473 XXXXXXXTNRKEDGAQNQGKKESDKKTIYLYKSQIPSDKTEGENAILIKEQNVINQLEQA 532 + K + LY+ Q+ S+K G +A+LIK++ +IN L+ Sbjct: 446 ----------------------ENSKQVSLYEKQVDSNKQIGVDALLIKDETLINHLKSL 483 Query: 533 AKKDEKGETVTNKVASLETKAANAKKDSSKTIIGYTTTDNVHEDGKNIFKINKLKTEDYD 592 + V+ K AS ET ++ +KT + +TT V+ D K IF + KL + Sbjct: 484 KSQ------VSAKSAS-ET----SQTKQNKTFLAFTT---VNADQKAIFDVGKLNGK--T 527 Query: 593 RKIIVGATEEVLEQSSTLQSDEAIVLPAPGKYQSGDAKKVTITQGPNIIGIHANEKENAE 652 KII+ ATE + STLQ EAIVL AP +++S D + + QGP++IGIHANE+E+ E Sbjct: 528 AKIIINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIE 587 Query: 653 TQKFVNWFLNNTESWEVKNGKDSSTKQQTAAEFFAESASYILPLKEIFDKDNKKATENKD 712 T+KFVNW+LN WE + K T AE+ A+ ASY+LP K N+ Sbjct: 588 TKKFVNWYLNTKVQWEENSIK-------TPAEYVADKASYLLPFK------------NRL 628 Query: 713 NNTSNKKQANTYAEKALDLFQQISKGDIVSYSDPSDFRSGKFRDGIGSNFNAAVSSKA-D 771 NNT N+Y E Q + ++ +++P+DF S K RDG+ SN NAA+++ + D Sbjct: 629 NNT------NSYNEFVKTAVSQFADKNVTKFAEPADFLSNKVRDGVKSNLNAAINNHSID 682 Query: 772 FDRFVKGFIATLGSEI 787 FD F+ LGS++ Sbjct: 683 FDSFINDLTDYLGSDV 698 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508028|ref|NP_109977.1| this protein specifications means only that it is a type I restriction with enzyme ecokI specificity protein [Mycoplasma pneumoniae M129] (187 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508029|ref|NP_109978.1| hypothetical protein MPN290 [Mycoplasma pneumoniae M129] (145 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508030|ref|NP_109979.1| hypothetical protein MPN291 [Mycoplasma pneumoniae M129] (196 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072870.1| hypothetical protein MG208 [Mycoplasma genitali... 285 3e-079 >ref|NP_072870.1| hypothetical protein MG208 [Mycoplasma genitalium G-37] Length = 196 Score = 285 bits (729), Expect = 3e-079, Method: Compositional matrix adjust. Identities = 130/196 (66%), Positives = 167/196 (85%) Query: 1 MRFFNKYKLFLDCAYKHLNIVLLDFKTNTVVDQLTIPVQQNLTELAVYHLEKLLKKNKVR 60 M F +KYKLFLDCAYK LNI++L+ KTN VVD+L+I V+QNLTELAVY+LE +L KNK++ Sbjct: 1 MFFLSKYKLFLDCAYKTLNIIILEMKTNAVVDELSIGVEQNLTELAVYYLETMLTKNKLK 60 Query: 61 NNTVRQFYVTTGPGSFTGQRVGAIIAKTWCTVNPNCQLFALNSLRLQIPYGCGISKISAG 120 ++++QFYVT GPGSFTGQR+ IIAK+WC + P+C+L+ALNSLR QIPY GISKIS G Sbjct: 61 KSSIKQFYVTIGPGSFTGQRIATIIAKSWCLLYPSCELYALNSLRFQIPYEHGISKISCG 120 Query: 121 NEKNYCGLFTETTSEIALLAKPDFVKLCKANTELPVYENFENIDSIEELFLNNIERFELV 180 N++NYCGL+++TTSEI L++K DFVKLCKAN ELP+YENFENI+S +L L+NI+ FE + Sbjct: 121 NDQNYCGLYSQTTSEIKLISKADFVKLCKANNELPMYENFENIESYSKLLLSNIDHFERI 180 Query: 181 ENPQNLELLYLKDPVN 196 E+P L+ +YLKDPVN Sbjct: 181 EDPLTLQPIYLKDPVN 196 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508031|ref|NP_109980.1| similar to RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D [Mycoplasma pneumoniae M129] (309 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072871.1| sfhB protein, putative [Mycoplasma genitalium G... 347 1e-097 ref|NP_073042.1| hypothetical protein MG370 [Mycoplasma genitali... 77 2e-016 >ref|NP_072871.1| sfhB protein, putative [Mycoplasma genitalium G-37] Length = 308 Score = 347 bits (890), Expect = 1e-097, Method: Compositional matrix adjust. Identities = 176/309 (56%), Positives = 227/309 (73%), Gaps = 1/309 (0%) Query: 1 MEQTFSVTTAQRLDTFLATLLNLSRVKVAKLIVDGLVSVNGKKITKNGWLVQPEDRVHVN 60 M+Q F VTT +RLD+ LA+LLNLSRVKV KLI++G + VN K KN +V +D + V Sbjct: 1 MKQCFVVTTTKRLDSLLASLLNLSRVKVVKLIMNGQIKVNEKLTFKNSLIVAKDDVIKVE 60 Query: 61 WSEELFEKVPVEVQPYDFPLDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHCN 120 +E V+PY+ L++L+ED+ +MV+NKP+GL++HPT+FNE SLL A +FH N Sbjct: 61 IHDETTSDFITSVEPYNLKLEVLFEDKDLMVINKPSGLLTHPTTFNEKASLLAACIFHNN 120 Query: 121 HQPVFLVHRLDRDTSGVIMLAKNXXXXXXXXXXXXXRVMKRYYLALVHFPLDSLSGTISA 180 PV+LVHRLDRDTSG I++ KN R +KRYY+ALVHFP ++L+G+I+A Sbjct: 121 KNPVYLVHRLDRDTSGAIVVCKNQASLLNLQNQLQNRTLKRYYVALVHFPFNALTGSINA 180 Query: 181 PLERVGNNKVMWKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQIRVHLQFIK 240 PL RV NNKVM+K+ ++ KAK A TKF V+NQNEKAALI ELLTGRTHQIRVHL+FI+ Sbjct: 181 PLARVNNNKVMFKIAQTA-KAKQAITKFKVINQNEKAALISLELLTGRTHQIRVHLKFIQ 239 Query: 241 HPVYNDPLYGLKSEQATEYGQYLHAQQISFIHPTLNKEMGFEAQLDKTFSDKLDNLNLKI 300 HPVYNDPLYG+KSE+ YGQ+LHA +I FIHPTLNK M F A L+ FS KL +LNL + Sbjct: 240 HPVYNDPLYGIKSEKKDSYGQFLHANRICFIHPTLNKPMDFHAPLEPKFSTKLKSLNLSL 299 Query: 301 ANSLYALFQ 309 + L+ LF+ Sbjct: 300 TDPLHVLFK 308 >ref|NP_073042.1| hypothetical protein MG370 [Mycoplasma genitalium G-37] Length = 323 Score = 77.0 bits (188), Expect = 2e-016, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 19/207 (9%) Query: 80 LDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHC----------NHQPVFLVHR 129 L I++EDE I+VV+KP G++ P + +L L HC N P F HR Sbjct: 88 LKIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFYPQF-AHR 146 Query: 130 LDRDTSGVIMLAKNXXXXXXXXXXXXXRVMKRYYLALVHFPLDSLSGTISAPLERVGNNK 189 +DR+TSG+++ AK + + Y LV + L G +A ++ NN Sbjct: 147 IDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVFGQFNHL-GLQTAYWKKDNNNG 205 Query: 190 VM---WKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQIRVHLQFIKHPVYND 246 ++ WK + K F + + Q + +LI L++GRTHQIR L + + D Sbjct: 206 IVTVKWKPFPEAKKISTFFENSSYIAQKD-MSLITIRLISGRTHQIRACLNLFSNQLVGD 264 Query: 247 PLYGL---KSEQATEYGQYLHAQQISF 270 Y L K+ Q LHA ++ F Sbjct: 265 KKYSLIQFKNRNNKYKHQALHAYELVF 291 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508032|ref|NP_109981.1| prolipoprotein signal peptidase [Mycoplasma pneumoniae M129] (184 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072872.1| prolipoprotein signal peptidase (lsp) [Mycoplas... 211 4e-057 >ref|NP_072872.1| prolipoprotein signal peptidase (lsp) [Mycoplasma genitalium G-37] Length = 181 Score = 211 bits (537), Expect = 4e-057, Method: Compositional matrix adjust. Identities = 113/182 (62%), Positives = 130/182 (71%), Gaps = 5/182 (2%) Query: 3 KAPTFFSKLLKQILFANRKPFLYYKLALILFVGFVILFQVFMLRAALNGEKGINGANGTD 62 + FFS+L Q+L AN+KPFL+YKL +I FVGF+IL QVF+LR ALNGE + T Sbjct: 4 RKTKFFSQLKHQVLTANQKPFLFYKLTMIGFVGFIILLQVFILRNALNGE-----MDNTM 58 Query: 63 VARSSFISIYVIGNKGVGFSLLADQPGLVYFLQGFLSFIALFFLVFSTSYNYIFWITTLA 122 VA S FI+IYVI NKGVGFSLL +Q GLVYFLQG LS IAL FLVF Y+YIFWITTLA Sbjct: 59 VANSGFINIYVIRNKGVGFSLLQNQTGLVYFLQGLLSVIALVFLVFMVKYSYIFWITTLA 118 Query: 123 FGSLGNFFDRLTSGSGEVLDYFVFSGGNSVFNLADCCITXXXXXXXXXXXXXXXKEMKQT 182 FGSLGNFFDRLTS + VLDYF+F G+SVFN ADCCIT KE K + Sbjct: 119 FGSLGNFFDRLTSANDSVLDYFIFQNGSSVFNFADCCITFGFIGLFFCFLIQMFKEFKHS 178 Query: 183 KS 184 K+ Sbjct: 179 KN 180 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508033|ref|NP_109982.1| similar to intracellular protease [Mycoplasma pneumoniae M129] (206 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508034|ref|NP_109983.1| hypothetical protein MPN295 [Mycoplasma pneumoniae M129] (220 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072873.1| hypothetical protein MG210.1 [Mycoplasma genita... 303 1e-084 >ref|NP_072873.1| hypothetical protein MG210.1 [Mycoplasma genitalium G-37] Length = 219 Score = 303 bits (776), Expect = 1e-084, Method: Compositional matrix adjust. Identities = 151/217 (69%), Positives = 171/217 (78%), Gaps = 4/217 (1%) Query: 1 MNNTKNKSDWQLFLEDYRFYHEKEFDWITYLNHCLNSYPDFDILKFIRKYGPECEKSFLS 60 M TKNKSDWQ+FLEDYRFY E +FDW+TYLN+CLNSYPDFDI+KFI+KYGPECEKSFLS Sbjct: 1 MGKTKNKSDWQIFLEDYRFYFETDFDWVTYLNNCLNSYPDFDIIKFIKKYGPECEKSFLS 60 Query: 61 LQSKTKADVYGVFTKQIKAGSVNEVLAQKLVQLDALRTNYLIGALYSTNKTQKKLFKQSW 120 QSK K+DVY T +IK +E L +LVQLDALRTNYLIG+L+S NKTQ+KL K+SW Sbjct: 61 WQSKAKSDVYSELTNKIKKQQFSEQLIYQLVQLDALRTNYLIGSLFSDNKTQRKLLKRSW 120 Query: 121 KNAKKQGYTKQEWLMTLVGLPFEKGEYHKQLYAHSRQEILDLVEAVKKLYLRPE-KDDKL 179 KNAKK+GYTKQEWLM LVGLPFEKG YHKQLY HSRQEILDL E +KKLYL+ E +DKL Sbjct: 121 KNAKKEGYTKQEWLMILVGLPFEKGAYHKQLYDHSRQEILDLTEVIKKLYLKTETNNDKL 180 Query: 180 EFADXXXXXXXXXXXXTNAVTLPSDDLDKELFEFSGE 216 EFA T + L S DLDK+L EFSGE Sbjct: 181 EFA---ATTSKTTAQLTKTMPLNSSDLDKDLMEFSGE 214 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508035|ref|NP_109984.1| ribosomal protein S21 [Mycoplasma pneumoniae M129] (60 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072874.1| Ribosomal protein S21 [Mycoplasma genitalium G-37] 109 5e-027 >ref|NP_072874.1| Ribosomal protein S21 [Mycoplasma genitalium G-37] Length = 62 Score = 109 bits (272), Expect = 5e-027, Method: Compositional matrix adjust. Identities = 54/60 (90%), Positives = 59/60 (98%) Query: 1 MPKIEVKNDDLELALKKFKRVSLEIRRLAQRHEYHLRKGMRLREKRKIAQKKRRKFRNMV 60 MPKIEVKNDDLELALKKFKR+SLE+RRLAQRHEYHLRKGMRLREK+KIAQKKRRKFR++ Sbjct: 1 MPKIEVKNDDLELALKKFKRISLEVRRLAQRHEYHLRKGMRLREKQKIAQKKRRKFRSLA 60 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508036|ref|NP_109985.1| hypothetical protein MPN297 [Mycoplasma pneumoniae M129] (149 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072875.1| hypothetical protein MG211 [Mycoplasma genitali... 196 8e-053 >ref|NP_072875.1| hypothetical protein MG211 [Mycoplasma genitalium G-37] Length = 147 Score = 196 bits (498), Expect = 8e-053, Method: Compositional matrix adjust. Identities = 96/149 (64%), Positives = 117/149 (78%), Gaps = 2/149 (1%) Query: 1 MDNDKKDKIILSGELTNHRFNFTKDGENGYSAYEVDRFLDQLVHTLTHYEAQRNREEEMK 60 MDN K+I S L NHRFNF KD + GY A EVD FLDQL TL HYE +N E+E+K Sbjct: 1 MDNKNPQKLITSELLANHRFNFAKDDKGGYDANEVDAFLDQLTKTLIHYEEMKNNEQELK 60 Query: 61 TAYEKLFQDRDEILKRCSKLEAELNNFYENGYSNRVLISRVQALENKIESLPSGQNDRLE 120 AY+KLF DRD+IL RC+KLEA+LN FYENGY+N+VLI+RVQ LE+K+E LP ++LE Sbjct: 61 NAYDKLFSDRDQILSRCAKLEADLNTFYENGYANKVLINRVQELEDKLEKLPDRYTEKLE 120 Query: 121 RIEKLLKRVIKHWTDGEDLSYGDFDDDFF 149 RIEKLLK+VIKHWTDGED+S +F+D+FF Sbjct: 121 RIEKLLKKVIKHWTDGEDIS--NFEDEFF 147 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508037|ref|NP_109986.1| similar to holo-acyl-carrier protein synthase [Mycoplasma pneumoniae M129] (119 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072876.1| hypothetical protein MG211.1 [Mycoplasma genita... 135 1e-034 >ref|NP_072876.1| hypothetical protein MG211.1 [Mycoplasma genitalium G-37] Length = 114 Score = 135 bits (341), Expect = 1e-034, Method: Compositional matrix adjust. Identities = 67/114 (58%), Positives = 91/114 (79%), Gaps = 2/114 (1%) Query: 1 MILGIGIDLVEIKRFEQLARQTDNCFAKRLLTSTEYAHYAKLRKDSEKSSFLAVHWSLKE 60 M++GIGID+V++KRF L +T +CFAKRLLTS E Y KL ++++++FLAVHW+LKE Sbjct: 1 MVVGIGIDVVQLKRFLTLV-ETSDCFAKRLLTSNELNSYWKL-NNNQRANFLAVHWTLKE 58 Query: 61 AIYKAVNHIKPLFSQLEITKKNQRYNCQIDPKIELLLSVSYSSNNITAICLAQQ 114 AIYKA +HIKPLF++LEI K N +Y C+ I LLLSVSY++ +++AICLAQQ Sbjct: 59 AIYKATSHIKPLFTKLEIYKLNNQYRCEFIQNINLLLSVSYTNCHVSAICLAQQ 112 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508038|ref|NP_109987.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Mycoplasma pneumoniae M129] (266 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072877.1| 1-acyl-sn-glycerol-3-phosphate acetyltransferas... 310 1e-086 >ref|NP_072877.1| 1-acyl-sn-glycerol-3-phosphate acetyltransferase (plsC) [Mycoplasma genitalium G-37] Length = 268 Score = 310 bits (793), Expect = 1e-086, Method: Compositional matrix adjust. Identities = 149/230 (64%), Positives = 184/230 (80%) Query: 33 ISSLISAKNYESIPENYPPEIRFKKVYRLVSLFLYIKGVKVVIVNPENVPKKAVLVVANH 92 ++ LI++KNYES+P NYPPEIRFKKVYRLVS++LYIKG+KVV VN + +PKK VLVVANH Sbjct: 33 LACLITSKNYESLPYNYPPEIRFKKVYRLVSMWLYIKGIKVVTVNDKIIPKKPVLVVANH 92 Query: 93 KSNLDPLILIKAFGKTEGVPPLTFIAKIELQDTWLFKIMKLIDCVFIDRKNLRQMAASLE 152 KSNLDPL+LIKAFG+ + PPLTF+AKIEL+DT LFK+MKLIDCVFIDRKN+RQ+A +LE Sbjct: 93 KSNLDPLVLIKAFGRLKNSPPLTFVAKIELKDTVLFKLMKLIDCVFIDRKNIRQIANALE 152 Query: 153 QQQQIIRQGTALCVFPEGTRVLSRQIGEFKSGALKVAYNAFVPIVPLTIVGSMGHMESKK 212 QQQ+IRQGTA+ VF EGTR+LS IGEFK GALKVAYNAFVPI+P++IVGS+G MES K Sbjct: 153 TQQQLIRQGTAIAVFAEGTRILSNDIGEFKPGALKVAYNAFVPILPVSIVGSLGKMESNK 212 Query: 213 RLQKAQVERDRGYKIQVXXXXXXXXXXXXXXDSQNVANNVWREISQTYAQ 262 RL++ V++ Y+++V DS N+ANN+ IS Y Sbjct: 213 RLKEHGVKKSSNYEVKVIFNKLINPISFNQIDSNNLANNIRSIISDAYTS 262 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508039|ref|NP_109988.1| bidomainal:Dihydrofolate Reductase and C-terminal domain is conserved hypo-thetical [Mycoplasma pneumoniae M129] (506 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072878.1| hypothetical protein MG213 [Mycoplasma genitali... 357 e-100 ref|NP_072894.1| dihydrofolate reductase (dhfR) [Mycoplasma geni... 83 7e-018 >ref|NP_072878.1| hypothetical protein MG213 [Mycoplasma genitalium G-37] Length = 471 Score = 357 bits (915), Expect = e-100, Method: Compositional matrix adjust. Identities = 213/483 (44%), Positives = 300/483 (62%), Gaps = 30/483 (6%) Query: 1 MITLIWCQDKHFGIGRDNTIPWKLTEANQHFYNTTKNQTVVMGYNTFQELGDKLTDHNVV 60 MI+LI+ + F P E HF +T+V+ Y +FQ +L + Sbjct: 1 MISLIFDKSNSFN-------PQLCVELLNHFKVVMLTKTIVVDYPSFQAWKAQLKPFKLA 53 Query: 61 VLSKKHFEELQNNTNIKVFNSIEKLLQHHFNRDLYVIGGKQIFHHFIELADRLIISVLPV 120 V S EL N+ + VFN+ ++LL N DL + + F D+LI+ + P Sbjct: 54 VFSDNLQTELTPNSKLTVFNNYQQLLVD--NNDLIIFATPTLVQLFDNEIDQLIV-INPT 110 Query: 121 D-----FKCNLRLKLGLDSFELMQEQQHSQFKVQYWHKKHPERLSFNVFLEDYNGTLPNL 175 F CN + F L+++ +V Y+ KK F V + + G L +L Sbjct: 111 SKSKDQFNCNW------NDFVLIKQTNFKNHQVGYFDKKSSYEPPFTVVTDHFFGNLTDL 164 Query: 176 LELLIDKKFNLHQVDIAKITTQYLHLINTNLNKQAIEPITDYLVITSRIVEQKANNLLQI 235 LL+DKK +++ VDI I+ QYL++I NK+AIE ITDYLVITS+I+ +KA+NLL Sbjct: 165 FSLLVDKKVSVNDVDIGLISLQYLNIIANYTNKKAIEKITDYLVITSKILAKKADNLL-- 222 Query: 236 ND----IALDSDFLDNKLRDKLVAQLVEYKRYRESLDDFEKLRINRLAYFSKDNDFNRFI 291 ND L+ D N RDK++A LVE+KRY +SL +FEKLR+NRLAYFSK N+ +FI Sbjct: 223 NDHQEESVLEYDLATNNFRDKMIANLVEHKRYCDSLGEFEKLRVNRLAYFSKANEMEQFI 282 Query: 292 QTVDKSNTEPVKIEDELPNYVSVLKLHHAMNKLMQRWRAQFLANKNISIQELSIEQVQAE 351 +T +N + V +ED+LPNY+SVLKL HAMNKL++ + L NKNI+I+ELS+EQVQ E Sbjct: 283 KT---ANDQLVTVEDQLPNYISVLKLFHAMNKLLEMRLSSLLTNKNITIKELSVEQVQKE 339 Query: 352 ILATIKQFGYHSVSLKRVLLKVNHHISLMYFITAFVALLVLINNQIIDIEQTSFDDELYI 411 ++ IKQF Y +VSLKRVLLK+NH ISLMYF+TAFVALLVL+NNQ+I +EQ + ELYI Sbjct: 340 LVLAIKQFNYQTVSLKRVLLKLNHPISLMYFVTAFVALLVLLNNQVIGLEQKDYHSELYI 399 Query: 412 CLLDSSRIEQLQETPEAMVERAVKQRQEAQELARQVAREKAIANAQKREAYLKAKYGKDY 471 LLD ++++ QE+P+ MV+R Q+Q+ + + + + +AI N QKR YLK KYG++Y Sbjct: 400 FLLDENQLKTFQESPDEMVKRIQAQQQQNELIIAKNKQLRAIKNKQKRADYLKKKYGENY 459 Query: 472 LTR 474 L + Sbjct: 460 LDK 462 >ref|NP_072894.1| dihydrofolate reductase (dhfR) [Mycoplasma genitalium G-37] Length = 160 Score = 82.8 bits (203), Expect = 7e-018, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 8/161 (4%) Query: 1 MITLIWCQDKHFGIGRDNTIPWKLTEANQHFYNTTKNQTVVMGYNTFQELGDKLTDHNVV 60 M+ IW + IG +NT+PW + + HF TT Q ++MG T++ L + Sbjct: 1 MLIAIWAMTQEGLIGNNNTLPWMIKQELAHFKKTTLFQALLMGRKTYESLPKVFEKRTIF 60 Query: 61 VLSKKH---FEELQNNTNIKVFNSIEKLL---QHHFNRDLYVIGGKQIFHHFIELADRLI 114 +LSK FEE + +KV N L+ Q + +DL++ GGK ++ I D+LI Sbjct: 61 LLSKDQNYRFEE--KGSEVKVINDFWPLIKSYQANKEKDLFICGGKSVYEQTINECDQLI 118 Query: 115 ISVLPVDFKCNLRLKLGLDSFELMQEQQHSQFKVQYWHKKH 155 +S++ +K + LK+ L F L + + +F V Y+ KK Sbjct: 119 VSIIKKKYKGDQFLKVDLSKFVLNEVVEFEEFNVNYYRKKQ 159 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508040|ref|NP_109989.1| hypothetical protein MPN301 [Mycoplasma pneumoniae M129] (208 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072879.1| hypothetical protein MG214 [Mycoplasma genitali... 313 1e-087 >ref|NP_072879.1| hypothetical protein MG214 [Mycoplasma genitalium G-37] Length = 207 Score = 313 bits (801), Expect = 1e-087, Method: Compositional matrix adjust. Identities = 152/208 (73%), Positives = 177/208 (85%), Gaps = 1/208 (0%) Query: 1 MDATIKVTKPVLKQKDSSAANLVAAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALV 60 M TI + P LK K S ANLVA+IYGLLFV G KG+TL EL R+ +K G+EK+K AL+ Sbjct: 1 MKTTINIATPTLK-KPSKEANLVASIYGLLFVCGAKGITLRELIRIFKKAGIEKVKLALL 59 Query: 61 QLERKLSLDDESGIEIKKFGHSFRLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAY 120 LERKL+ D++SG+E+KKFG+SF LVTK IKD++H L +K+KNPLNSK MEVLAIIAY Sbjct: 60 ALERKLADDEQSGVELKKFGNSFSLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAY 119 Query: 121 NQPCTRPRINEIRGADSFQIVDDLLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSL 180 NQPCTRPRINEIRG DSFQIVDDL+ KELIVELGR D PGRPFIYEVS KFYDLFGI+SL Sbjct: 120 NQPCTRPRINEIRGVDSFQIVDDLIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSL 179 Query: 181 DELPKVENFDLDKFRQGSFFDSNRYGDD 208 D+LPK+E+FDLDKF+QGSFFDSNRYGD+ Sbjct: 180 DQLPKIEHFDLDKFKQGSFFDSNRYGDE 207 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508041|ref|NP_109990.1| 6-phosphofructokinase [Mycoplasma pneumoniae M129] (328 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072880.1| 6-phosphofructokinase (pfk) [Mycoplasma genital... 457 e-131 >ref|NP_072880.1| 6-phosphofructokinase (pfk) [Mycoplasma genitalium G-37] Length = 323 Score = 457 bits (1175), Expect = e-131, Method: Compositional matrix adjust. Identities = 213/321 (66%), Positives = 261/321 (81%) Query: 8 KIAILTSGGDAPGMNATLVYLTRYATSSEIEVFFVKNGYYGLYHDELVPAHQLDLSNSLF 67 KIAILTSGGDA GMNAT+ YLT+YA + ++EVF+VKNGYYGLYH+ + + +LDL++ F Sbjct: 3 KIAILTSGGDASGMNATIAYLTKYAIAKQLEVFYVKNGYYGLYHNHFITSKELDLTDFFF 62 Query: 68 SAGTVIGSKRFVEFKELKVREQAAQNLKKRQIDYLVVIGGDGSYMGAKLLSELGVNCYCL 127 GTVIGS RF +F++ +R+QA NLKKR I+ LVVIGGDGSYMGAK LSELG+NC+CL Sbjct: 63 MGGTVIGSSRFKQFQDPSLRKQAVLNLKKRGINNLVVIGGDGSYMGAKALSELGLNCFCL 122 Query: 128 PGTIDNDINSSEFTIGFLTALESIKVNVQAVYHTTKSHERVAIVEVMGRHCGDLAIFGAL 187 PGTIDND+NSSEFTIGF TALE+I+VNV+A+YHTTKSH R+AI+EVMGR C DL IFG L Sbjct: 123 PGTIDNDVNSSEFTIGFWTALEAIRVNVEAIYHTTKSHNRLAIIEVMGRDCSDLTIFGGL 182 Query: 188 ATNADFVVTPSNKMDLKQLESAVKKILQHQNHCVVIVSENIYGFDGYPSLTAIKQHFDAN 247 ATNA FVVT N +DL E AV+K+LQ QN+CVV+VSENIYG +G PSL +K+HF+ N Sbjct: 183 ATNASFVVTSKNSLDLNGFEKAVRKVLQFQNYCVVLVSENIYGKNGLPSLEMVKEHFENN 242 Query: 248 NMKCNLVSLGHTQRGFAPTSLELVQISLMAQHTINLIGQNKVNQVIGNKANVPVNYDFDQ 307 +KCNLVSLGHTQRGF+P S+EL QISLMA+HTI+L+ N +QVIG K N VNYDF+ Sbjct: 243 AIKCNLVSLGHTQRGFSPNSIELFQISLMAKHTIDLVVNNANSQVIGMKNNQAVNYDFNT 302 Query: 308 AFNMPPVDRSALIAVINKNII 328 AFN+P DR+ L+ +N II Sbjct: 303 AFNLPKADRTKLLNQVNTAII 323 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508042|ref|NP_109991.1| pyruvate kinase [Mycoplasma pneumoniae M129] (508 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072881.1| pyruvate kinase (pyk) [Mycoplasma genitalium G-37] 808 0.0 >ref|NP_072881.1| pyruvate kinase (pyk) [Mycoplasma genitalium G-37] Length = 508 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/508 (76%), Positives = 434/508 (85%) Query: 1 MIHHLKRTKIIATCGPALTKKLWTLAMLDDPXXXXXXXXXXXNIENIIKNGVTVIRLNFS 60 MI HLKRTKIIATCGPALTK L +L MLDD NIE IIK+GV+VIRLNFS Sbjct: 1 MIDHLKRTKIIATCGPALTKSLVSLKMLDDNEYAAIKKVAYANIEAIIKSGVSVIRLNFS 60 Query: 61 HGNHEEQAVRIKIVRDVAKKLNLPVSIMLDTNGPEIRVFETAPEGLKILKDSEVVINTTT 120 HG HEEQ VRIKIVRDVAK +N+PVSIMLDTNGPEIR+ ET EGLKI KDSEV+INT + Sbjct: 61 HGTHEEQQVRIKIVRDVAKAMNIPVSIMLDTNGPEIRIVETKKEGLKITKDSEVIINTMS 120 Query: 121 KEVAKNNQFSVSDASGTYNMVNDVKVGQKILVDDGKLSLVVKRIDTKNNQVICVAQNDHT 180 K +A +NQF+VSDASG YNMVNDV +GQKILVDDGKL+LVV R+D ++NQVICVA+NDHT Sbjct: 121 KMIASDNQFAVSDASGKYNMVNDVNIGQKILVDDGKLTLVVTRVDKQHNQVICVAKNDHT 180 Query: 181 IFTKKRLNLPNADYSIPFLSAKDLRDIDFGLTHQIDYIAASFVNTTENIKQLRDYLASKN 240 +FTKKRLNLPNA YSIPFLS KDL+DIDFGL+ IDYIAASFVNT +IKQLRDYL KN Sbjct: 181 VFTKKRLNLPNAQYSIPFLSEKDLKDIDFGLSQGIDYIAASFVNTVADIKQLRDYLKLKN 240 Query: 241 AKHVKLIAKIESNHALNNIDGIIKASDGIMVARGDLGLEIPYYKVPYWQRYMIKACRFFN 300 A VK+IAKIESNHALNNID IIKASDGIMVARGDLGLEIPYY+VPYWQRYMIKACRFFN Sbjct: 241 ASGVKIIAKIESNHALNNIDKIIKASDGIMVARGDLGLEIPYYQVPYWQRYMIKACRFFN 300 Query: 301 KRVITATQMLDSLEKNIQPTRAEVTDVYFAVDRGNDATMLSGETANGAFPLNAVYVMKMI 360 KR ITATQMLDSLEKNIQPTRAEVTDVYFAVDRGNDATMLSGETA+G +PLNAV VM+ I Sbjct: 301 KRSITATQMLDSLEKNIQPTRAEVTDVYFAVDRGNDATMLSGETASGLYPLNAVAVMQKI 360 Query: 361 DKQSETFFDYQYNLNYYMANSKARHSEFWKQVVLPLAQKTAPKRKLINSDFKYDFVVHAT 420 DKQSETFFDYQYN+NYY+ NS A S FW VVLPL +KT PKRKL+NS FKYDF+V+ T Sbjct: 361 DKQSETFFDYQYNVNYYLKNSTANKSRFWHNVVLPLTKKTVPKRKLVNSAFKYDFIVYPT 420 Query: 421 NNLNEIYALSNARLAAAVIILTNDPQVYTGHGVDYGIFPYLIDQKPQSLSKAEFKSLANV 480 NN+N IYALSNARLAAAVIILTN+ +VYTGHGVDYGIF YLID+ P L+KAE LA Sbjct: 421 NNINRIYALSNARLAAAVIILTNNKRVYTGHGVDYGIFCYLIDKNPNQLTKAELIELAWK 480 Query: 481 AIKHYQQHGEISQLKQCLGVFHNKIISL 508 AI HYQ +G++ +LKQCL V++ II+L Sbjct: 481 AINHYQAYGDLEKLKQCLAVYNETIINL 508 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508043|ref|NP_109992.1| (N-terminal, fragment) [Mycoplasma pneumoniae M129] (238 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508044|ref|NP_109993.1| (C-terminal, fragment) [Mycoplasma pneumoniae M129] (198 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508045|ref|NP_109994.1| less (fragment) [Mycoplasma pneumoniae M129] (273 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508046|ref|NP_109995.1| carbamate kinase (EC 2.7.2.2) [Mycoplasma pneumoniae M129] (309 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508047|ref|NP_109996.1| aa_permeases [Mycoplasma pneumoniae M129] (565 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508048|ref|NP_109997.1| hypothetical protein MPN309 [Mycoplasma pneumoniae M129] (405 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072882.1| proline-rich P65 protein [Mycoplasma genitalium... 232 6e-063 >ref|NP_072882.1| proline-rich P65 protein [Mycoplasma genitalium G-37] Length = 372 Score = 232 bits (591), Expect = 6e-063, Method: Compositional matrix adjust. Identities = 171/421 (40%), Positives = 223/421 (52%), Gaps = 65/421 (15%) Query: 1 MDINKPGWNQSDQQATA-YDPNQQQYYGD------GSTYYDPDQ------AVDPNQAYYP 47 M+ N+ + Q+ Q + ++ +Q QYY D + +DP+Q DPNQ YY Sbjct: 1 MEKNRSAFQQNQQASNQPFNQDQNQYYQDPNQQQFNQSGFDPNQQQFNQPGFDPNQQYYQ 60 Query: 48 DPNTXXXXXXXXXXXXXXXXXXXXXAQDPNQAYYADPNAYQDPNAYTDPNA--YVDPNAY 105 DPN D NQ YY DPN Q DPN Y DPN Sbjct: 61 DPNQQQFNQAGF---------------DQNQQYYQDPNQQQFNQPGFDPNQQYYQDPNQQ 105 Query: 106 QDPNAYVDPNN-YTDPNXXXXXXXXXXXXXXXXAQDPNQAYYADPNAYQDPNAYTDPYYV 164 Q A D N Y DPN Q NQ+ + YQDPN + Sbjct: 106 QFNQAGFDQNQYYQDPN----------------QQQFNQSGFDQNQYYQDPNQ--QQFNQ 147 Query: 165 TSTDPNAYYGQVDNVPALEASDLAYEVTPQEQAAEQELFSEPETKVIREIHEFPFEKIRS 224 S D N Q N P S A+E+TPQEQ AEQE+F E +V+REIHE PFEKIRS Sbjct: 148 PSFDLN---NQQFNQPGFNQSP-AFEITPQEQKAEQEMFGEEPPQVVREIHELPFEKIRS 203 Query: 225 YFQTDFDSYNSRLTQLKDKLDNAIFSMRKAIDTVKENSANLQIMKQNFERQLKEQQTQRL 284 + Q+DFDSYN RL LK KLDNA++S+ K I EN+ANL+ ++ N E++++ Q+++L Sbjct: 204 FLQSDFDSYNFRLNSLKSKLDNALYSLDKTIQNTNENTANLEAIRHNLEQKIQN-QSKQL 262 Query: 285 TSNTDAEKIGAKINQLEERMQRLSRTMESVEWTKKEPRQEQFDPRFVDPRNFNNYVNNTD 344 +N D +K+ KIN+LE RMQ+L+R ES+ K + + + N D Sbjct: 263 RTNFDTQKLDDKINELEIRMQKLTRNFESLSELSKHNSYPNYYEKLL--------PNGGD 314 Query: 345 TMMSMFEKVLMMNLLRSTTPVQPPVQYFTPQPLTASPRPVYEEPISASFRRRGYRGDEFY 404 +M ++FEK LMMNLLR+T P QP VQY+ PQP RP Y+EPI A FRRRGYR D+FY Sbjct: 315 SMTNVFEKALMMNLLRTTLPPQPQVQYY-PQPYPYI-RPYYDEPIYAGFRRRGYR-DDFY 371 Query: 405 E 405 E Sbjct: 372 E 372 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508049|ref|NP_109998.1| Cytadherence High Molecular Weight Protein 2 (SwissProt HMW2_MYCPN) [Mycoplasma pneumoniae M129] (1818 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072883.1| cytadherence accessory protein (hmw2) [Mycoplas... 1733 0.0 >ref|NP_072883.1| cytadherence accessory protein (hmw2) [Mycoplasma genitalium G-37] Length = 1805 Score = 1733 bits (4489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 989/1828 (54%), Positives = 1325/1828 (72%), Gaps = 36/1828 (1%) Query: 1 MNDTDKKFPLQPVYDTGFDDGYLQRDYEKCLESAAANDAQTVELQTQLLAEIKNLENEIK 60 M DKK LQP+YD GFDDGYLQ +YEK + + D +E QLL EIK+LE+E+K Sbjct: 1 MKPFDKKPSLQPIYDIGFDDGYLQSEYEK---NRSKTDVDKIE--NQLLKEIKSLEDELK 55 Query: 61 ALKAQESRQPD-PHNNARIQSLEASLNRLVNEYNNFEFQKNYMVDRVAELNNKARFFKDE 119 LK +++ D P + +I LE LNRLVNEY NF+FQKN+MVD+V+EL+N RF+K+E Sbjct: 56 NLKGLKNQAEDNPELDKKINHLEVDLNRLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNE 115 Query: 120 LKRLQQENAAFVNSRYANWADFQSNYQLKLDQFQALIDQQNQTIKQLNEQIAANQGLIDQ 179 L RLQQENA F+NS+YAN A+FQ+NY KL+ F LI+ QNQTI +LN++I NQ LID Sbjct: 116 LTRLQQENADFLNSKYANLANFQANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDN 175 Query: 180 NVQRLQQNHSLDQQERDALLYEVDHLYNELYELENQKRLVGIEYEATYQDLVSADAELQN 239 NV LQ N ++ ++++ LL +D LYNEL +LENQKRL+ IEYE TY++LVSAD ELQN Sbjct: 176 NVALLQ-NPNITVEKKNYLLNVIDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQN 234 Query: 240 VYETIAQNQANFQKQCDAYWAQLKQVEQQIQTTKQELVDEESTLKVRLNDADFYINSRLA 299 VYE I QNQ F+ Q Y +L Q+E++IQ TKQELVD+ES L+V+++DADFYIN+RLA Sbjct: 235 VYENIDQNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLA 294 Query: 300 ELDDLTSKINERDFVSKEQAQDVKASLANLTKEKERLSAEKDSFERLRNTALNDINRMEQ 359 ELDD+ +++ +D ++K+ AQ V+ L L KEK+RL+ +K++F LR +AL DIN+++Q Sbjct: 295 ELDDVAKQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQ 354 Query: 360 ENALFAKHLEQQQYEFERKQQESLLKLETEHKQLQKRIGEFKIESEAKSEALLIQERELL 419 EN LFAKHLE QQ EFE+KQ +SLLKLETE+K LQ +I EFK ES KSE LL QEREL Sbjct: 355 ENELFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELF 414 Query: 420 EKRREIDDLLTQASLEYEQQRRTNQVLKEKHRQVQQHFQNLVHAKKKLDQKRHYLAEQKR 479 EKRREID LLTQASLEYE QR ++Q+LK+K +V+QHFQNL +AKK+LD++R+ L +QK+ Sbjct: 415 EKRREIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKK 474 Query: 480 IDEEQIFKLKEKIATERRELEKLYLVKKQKQDQKENDLLIFEKQLRQYQADFENEIEEKQ 539 +D E IF+LKEK+A ER+ELE+LYLVKKQKQDQKEN+LL FEKQL+Q+QADFENE+E KQ Sbjct: 475 VDSEAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQ 534 Query: 540 NELFASQKSLQKSFTQLKNKEAELNQKAQKIAEDWAHLKQNKHHHADLEIFLEGEFNHLQ 599 ELF ++ +L++SF +L++KE +LN KAQ+IA +++ LK +K AD E+ L+ E+ +LQ Sbjct: 535 QELFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQ 594 Query: 600 QEKHKLLEARTQFDNRVSLLSARFKQKQAELVKQKQSLEQLTAAFNKEQEAVERDWKDRL 659 QEK KL + RT F+ ++LS R +QK+ EL++QK++L+QLT +F +E+ +R+ K+ + Sbjct: 595 QEKQKLFQERTYFERNAAVLSNRLQQKREELLQQKETLDQLTKSFEQERLINQREHKELV 654 Query: 660 ANLEKQKEMLGDKVHQFDENSLNISKKLAERELAIKFKEKELEAAQKQLSLDNNNNAGLK 719 A++EKQKE+LG K+ F + SLN SK LAERE+AIKFKEKE+EA +KQL D NN ++ Sbjct: 655 ASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQ 714 Query: 720 LQLDKLSESLKTERLELEASKERILDFYDESSRRIADYESDLQARLAEVKTLEKNQQETA 779 L +L++SL ER EL+ +K+RI DF+++S +++ +YE LQ RL E++TLE NQ++ + Sbjct: 715 ADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHS 774 Query: 780 AKSERELKVALEKLNQAKKAFLQIRKQQLLEIASVKQQLAQKANLLKNQQAELDKQTEEL 839 +++ + L+KLN+ K+AFL +RK+Q +E+ ++KQ+L+ K L QQAELD++T EL Sbjct: 775 YQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHEL 834 Query: 840 EAAFLEQDTDKKELEKALHSVKSKQELLERERSFLLQKQREFAEHVAGFKRQVHFKTTQM 899 AFL D D+K L+ L +VK Q+L++ ERS LL+KQREFAE+VAGFKR KT+Q+ Sbjct: 835 NNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQL 894 Query: 900 QRLSEFNKQQQSEQIKRETELKIAFADLKKDYQLFELQKNQEFQQIEQKHXXXXXXXXXX 959 Q++ E K+Q+SEQ ++ETELKIAF+DL+KDYQ+FELQK+QEF+QIE K Sbjct: 895 QKIYELTKKQESEQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKN 954 Query: 960 XXXXXXXXXXXTALASQDQDTVQAKLDLARQQHELELRQNAFNQASLSLNKQREQLTNQV 1019 AL +Q QDTVQA+L+L R+QH+L L Q AFNQA+ SL KQREQLT ++ Sbjct: 955 NQVKLELDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKI 1014 Query: 1020 KVLHGELKKRHEKLTLKDRLLAEKEKDQHKKDAEINQRFKQFENEYADFDQAKKRELQEL 1079 + H ELKKR++ L LK + L KE+DQ +KD EIN RFKQFE EY DFD+AKKREL+EL Sbjct: 1015 QAFHYELKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEEL 1074 Query: 1080 NQIRRNLEQSNASLLKKRNQLTLDFALLRKVQHNTQTNRVQLNTQIKEFLLEKKNFQKAS 1139 +IRR+L QSN L +KR +L DF L KVQHNTQ NR QLN+QI++FLLE+KNFQ+ S Sbjct: 1075 EKIRRSLSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFS 1134 Query: 1140 DEAALQKALLIKRLRSFASKLQLQREALAIQKLEFDKRDEQQKSEINNAKLQLEQFKLEK 1199 +EA +KA LIKRLRSFAS L+LQ+EALAIQKLEFDKRDEQQK E+ A LQLEQFK EK Sbjct: 1135 NEANAKKAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEK 1194 Query: 1200 QNFDEAKQKQLIEFKDQCQRLDVEXXXXXXXXXXXXXXXXXYLTYKNRADLSQQQLQHKY 1259 QNFD KQ+QL+ K QC++L E YL KN+A+ SQQQLQ KY Sbjct: 1195 QNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKY 1254 Query: 1260 ANLLELKEKLQTAKRALDKKHRAIYGKMAQFVSELRQEKKQLLSAQKQVDDKSRLLEQNQ 1319 NLL+LKE L+ K LDKKHR+I+ ++ +F ++LR EKKQLL AQ+ VDDK+RLL++N+ Sbjct: 1255 TNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENE 1314 Query: 1320 RHLQNLSSETKKKRQSLEHDINKFDQRRKEAVSSILNSHKKLKQKEGELQGILQKLSLKK 1379 R+L LS+ET++KR LE I+ F+++RK+A +IL SHK++K+KEGELQ +L +L +K Sbjct: 1315 RNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRK 1374 Query: 1380 TQIEQEFSKLYQQREKLDRQRTTLSKLHRELKAQNEATAHKNREVLEIENYYKKELQRLT 1439 T++ +F+K +QRE+ + QR L +L + L+ Q + K + + EIEN YK+ ++ L Sbjct: 1375 TKLNNDFAKFSRQREEFENQRLKLLELQKTLQTQTNSNNFKTKAIQEIENSYKRGMEELN 1434 Query: 1440 TEKSEFDNNKNRLFEYFRKIRNEIEKKEAHIKTVLEETQKKRHLVETEAVKLHLQKQSII 1499 +K EFD NK+RL+EYFRK+R+EIE+KE+ +K VL+ETQ+K +L+E +A KL+++K +I Sbjct: 1435 FQKKEFDKNKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTID 1494 Query: 1500 SKGQELKEIKERVSRDISHTNKQREEXXXXXXXXXXXXXXXAEREREINNKDSLLTQKIQ 1559 K +ELK K++V +DI TNKQR+E ERER IN+KDSLL +KI+ Sbjct: 1495 FKEKELKAFKDKVDQDIDSTNKQRKELNELLNENKLLQQSLIERERAINSKDSLLNKKIE 1554 Query: 1560 TAKQKLSEKEARILKLLEKMRAVEQQYQAEITRLKTRNADLEKNDNKHLFPPLFKINGND 1619 T K++L +KE R+L+L+++M+ EQ+YQ EI RL+T+ D EK D K+ FPPLFKINGND Sbjct: 1555 TIKRQLHDKEMRVLRLVDRMKLAEQKYQTEINRLRTQTFDSEKQDIKNFFPPLFKINGND 1614 Query: 1620 MNXXXXXXXXXXQQKQEDSSNQIRHLFEQQLQFMQQRYENELTELRRQRALLEKKLDQIQ 1679 M QQKQ+D++ QIR LFEQQLQFMQQRYENEL ELRRQR LLEKKLDQIQ Sbjct: 1615 MAFPYLYPWLYPQQKQDDNTLQIRQLFEQQLQFMQQRYENELNELRRQRNLLEKKLDQIQ 1674 Query: 1680 LESQLSAKKNDFEKVEQMMQKLLEKTEQKLSAFDQKINALAEQINTQK----------AE 1729 LESQL+ K+++F KVE MM+KLLEKTE +L+ FDQKIN L +++N Sbjct: 1675 LESQLNNKQSEFSKVESMMEKLLEKTESRLNDFDQKINYLTKKVNQHNTYQPSSYQPTPS 1734 Query: 1730 HADSEKQQLLLRIEQLEKQNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLATX 1789 + DS+KQQLL RI++LEKQNL F A Sbjct: 1735 YQDSDKQQLLFRIQELEKQNL-----------------FQQQFQPAPAVVQQPTSFAAP- 1776 Query: 1790 XXXXXXXXXXXLNAEINSIKKLIAQKAA 1817 LNAEIN+IK+LIAQKAA Sbjct: 1777 -NITKQQQIAQLNAEINNIKRLIAQKAA 1803 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508050|ref|NP_109999.1| hypothetical protein MPN311 [Mycoplasma pneumoniae M129] (357 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072884.1| hypothetical protein MG218.1 [Mycoplasma genita... 330 1e-092 >ref|NP_072884.1| hypothetical protein MG218.1 [Mycoplasma genitalium G-37] Length = 346 Score = 330 bits (846), Expect = 1e-092, Method: Compositional matrix adjust. Identities = 186/364 (51%), Positives = 236/364 (64%), Gaps = 27/364 (7%) Query: 1 MTNDYQQLNYLVETDDEADIIIANLVKQLNELKEILLSLDNQDLEINQVNHRTTVHXXXX 60 + N+YQQLN LVE+DDEAD++IANLVKQLNELK+IL+SLDNQ+ V + Sbjct: 2 VNNEYQQLNTLVESDDEADLVIANLVKQLNELKQILVSLDNQEASATAVTDKKE------ 55 Query: 61 XXXXXXXXXXIADGNYNSNFFHNFSKETLQTQAKRGFLLLERCSLVGLQQLELEYLNVLG 120 + N N + FHNFSKETLQ QAKRGFLLLERCSLVGLQQLELEY+N+LG Sbjct: 56 -----------EEYNQNQSSFHNFSKETLQKQAKRGFLLLERCSLVGLQQLELEYVNLLG 104 Query: 121 RSFESHQDKINFLVNLRDLTNDHLLDTEKIVSTLEQIFNVIGGTEYTPILNSFFNQSLND 180 RSF+S+Q K L NL++L ++H DTEKI++TLE+IF+VIGG+EYTP+LNSFFN+ L+D Sbjct: 105 RSFDSYQQKTELLNNLKELVDEHFSDTEKIINTLEKIFDVIGGSEYTPVLNSFFNKLLSD 164 Query: 181 PDPIQREIGLKQFVANLRQRFKTLLQKTNNSIQQLEAEIQIPTTHIKSDEVMFGPPDM-- 238 PDPIQREIGL+QF+ LRQRFK L QK ++S++Q+E E +I T +++ EVMFGPPD+ Sbjct: 165 PDPIQREIGLRQFIITLRQRFKKLSQKIDSSLKQIETEAKIATEQVQNSEVMFGPPDIAN 224 Query: 239 NERLVLN--DSETDAILRSIEAELESALQNKKQ----VVVTAVPPIAANLATDSISXXXX 292 + L LN DSETDAIL S+E ELE+AL K Q ++VT PP Sbjct: 225 DHELNLNWPDSETDAILSSMENELEAALLAKHQEEPPLIVT--PPSLIKPTVSQPEVEVV 282 Query: 293 XXXXXXXXXXXXXXXXXXXXXXXXXRKPQISLRPIFQGNFPKRLSREDIQRYAHQLQELE 352 + RP+F+ N P +LS++DI YAHQL E Sbjct: 283 TPTNNTNFQPQVDLKPTDLKKQQKKKPLNFITRPVFKSNLPPKLSKDDIVHYAHQLLEKN 342 Query: 353 QSNE 356 NE Sbjct: 343 THNE 346 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508051|ref|NP_110000.1| hypothetical protein MPN312 [Mycoplasma pneumoniae M129] (218 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508052|ref|NP_110001.1| hypothetical protein MPN313 [Mycoplasma pneumoniae M129] (90 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072886.1| hypothetical protein MG220 [Mycoplasma genitali... 89 6e-021 >ref|NP_072886.1| hypothetical protein MG220 [Mycoplasma genitalium G-37] Length = 102 Score = 89.4 bits (220), Expect = 6e-021, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 1/91 (1%) Query: 1 MQRLKKSEAKQVVGGLSFWSFSAGVIMIVNAFSTLINTALDISEXXXXXXXXXXXSSYSY 60 M +L+K++AKQVVGGLSFW+FSAG+IMIVNA + + + DI + + + Sbjct: 10 MYKLEKAQAKQVVGGLSFWTFSAGLIMIVNALTGVAHAVNDIFQSTTANANGSDDDNENK 69 Query: 61 KRR-NSQKDYFSTGRFRLGLTPGKSSYSFPV 90 S+ +YF+T RF+LGLTPG SSYSFPV Sbjct: 70 NNSYRSKSNYFNTARFKLGLTPGSSSYSFPV 100 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508053|ref|NP_110002.1| hypothetical protein MPN314 [Mycoplasma pneumoniae M129] (141 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072887.1| hypothetical protein MG221 [Mycoplasma genitali... 245 1e-067 >ref|NP_072887.1| hypothetical protein MG221 [Mycoplasma genitalium G-37] Length = 154 Score = 245 bits (626), Expect = 1e-067, Method: Compositional matrix adjust. Identities = 115/141 (81%), Positives = 130/141 (92%) Query: 1 MLLGTFNITLDAKNRISLPAKLRAFFEGSIVINRGFENCLEVRKPQDFQKYFEQFNSFPS 60 MLLGTFN+TLD KNRISLPAKLR+FF+ SIVINRGFENCLE+RKP DF+ YF+ FN+FP+ Sbjct: 14 MLLGTFNLTLDNKNRISLPAKLRSFFDSSIVINRGFENCLEIRKPADFESYFQTFNNFPN 73 Query: 61 TQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWDKKLY 120 TQKDTRTLKRLIFANAN V++D+A R+LIPNNLI+DAKLDKEIVLIGQFDHLE+WDK Y Sbjct: 74 TQKDTRTLKRLIFANANLVELDSANRILIPNNLISDAKLDKEIVLIGQFDHLEVWDKVQY 133 Query: 121 EDYLANSESLETVAERMKDVK 141 E YLA+SESLETVAERMKD K Sbjct: 134 EQYLASSESLETVAERMKDAK 154 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508054|ref|NP_110003.1| SAM-Dependent Methytransferase (Koonin for MG ortholog) [Mycoplasma pneumoniae M129] (308 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072888.1| hypothetical protein MG222 [Mycoplasma genitali... 395 e-112 >ref|NP_072888.1| hypothetical protein MG222 [Mycoplasma genitalium G-37] Length = 309 Score = 395 bits (1015), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/308 (63%), Positives = 241/308 (78%), Gaps = 1/308 (0%) Query: 1 MLSNQP-HKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDS 59 ML+NQ H+SVL++EVIHNLNI GNYLDLT GF GHSQ ILE+LTTGTLT ND+DK+S Sbjct: 1 MLNNQQIHQSVLINEVIHNLNINPCGNYLDLTAGFAGHSQKILEKLTTGTLTINDVDKES 60 Query: 60 ITFCTELFKDKKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFK 119 I FC +LF NVV++HDNFANF HLKQL +TKFDGIL+DLGVSS+QL++P RGFSFK Sbjct: 61 INFCQKLFFKNNNVVIIHDNFANFPVHLKQLSITKFDGILMDLGVSSHQLNQPNRGFSFK 120 Query: 120 HAGPFDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNTKNP 179 + GP DMRM QS++ TAL +L+ L+E++L+ +LKK+G+I HPKPIA LK + KN Sbjct: 121 NDGPIDMRMDQSNQKNTALTVLKNLTEQKLSLILKKYGDIKHPKPIAIGLKKAVQTEKNL 180 Query: 180 XXXXXXXXXXXXXSNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRF 239 + FEKY+SRNYLAKVFQAIRIYLN E+ +L+ L IP LL N RF Sbjct: 181 TTTQLAKVVKECATGFEKYQSRNYLAKVFQAIRIYLNDEITNLKTALTFIPNLLKNNSRF 240 Query: 240 LVIVFHSLEEKLVRNYIFKLTHFVQPPELPVKLTPPFELITKKPILPTEQEIKTNPRVRS 299 LVIVFHS+EEK+VRN+I KLT F+QP LP+KLTP ++LITKKPILP+++E++ NPR RS Sbjct: 241 LVIVFHSIEEKIVRNFIAKLTSFIQPEALPIKLTPAYQLITKKPILPSQKELELNPRSRS 300 Query: 300 AKLFVIEK 307 AKLFVI+K Sbjct: 301 AKLFVIQK 308 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508055|ref|NP_110004.1| hypothetical protein MPN316 [Mycoplasma pneumoniae M129] (419 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072889.1| hypothetical protein MG223 [Mycoplasma genitali... 389 e-110 >ref|NP_072889.1| hypothetical protein MG223 [Mycoplasma genitalium G-37] Length = 411 Score = 389 bits (999), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/423 (48%), Positives = 300/423 (70%), Gaps = 16/423 (3%) Query: 1 MYNLKNIYASITLYPHEINLVVSDNNNQFHVLYENSIANDELYTHAGITNKAKFKVVLNQ 60 MY KNI + +T Y +I LVVSD+ NQF++L+ +I ND Y+ + NK + K+ LNQ Sbjct: 1 MYKPKNINSVLTFYKDQIQLVVSDDQNQFNILFYQTIDNDGFYSKQQLKNKLRLKLALNQ 60 Query: 61 LINNANDYLGFKLEKVIVVLAELVDDLEINRFKTDVFFTGYDFNHQDMLSSEKNRFLLKN 120 L++ AN +LGFKLEKV+VVLAEL+DDL+I+ FK+++FFTGYDF+H+ M+ EK RF +N Sbjct: 61 LVDQANYFLGFKLEKVVVVLAELIDDLKIHNFKSEIFFTGYDFDHKAMIKKEKQRFCEQN 120 Query: 121 RHINPNEVLDLVALNYRDLTTDKISKNFKYNCSYRANVIYYTTKNSLVKELKPFLKRNII 180 + V+D + LNY D+ +KI+K+F +N SY AN++ Y++K++L+ ELK FLKRN+ Sbjct: 121 NQLT---VMDTMVLNYHDVINNKITKSFAFNKSYVANLVAYSSKSNLIGELKFFLKRNVN 177 Query: 181 VKIDKIVTHHMVLAHSIKQINKNNLFVYLGEHTTDLMLFMDNALVDLVSEPFGRVNFLES 240 +K+ KI++HH+ LA+S+ + +NN+FVYLG+ TT+LMLFMDNALVD+++ FG+ +F++ Sbjct: 178 LKVKKIISHHLALANSLSK-KQNNMFVYLGQKTTELMLFMDNALVDVITNQFGKNHFIDI 236 Query: 241 DNDSENKALLEFLVDSTARIGDSGSIGMAYTDGSTYKEIRAVTIDDLIQSVNEKTKYLID 300 + ENK LLEFLVD+T +IGD S+GM YTDG +YKEI+A+TI DL+Q+V++K K LID Sbjct: 237 PANQENKPLLEFLVDNTTKIGDCYSLGMTYTDGDSYKEIKALTIGDLMQTVSDKIKTLID 296 Query: 301 FINTNTEIFFQKYGFLPSTLLFYTKSKXXXXXXXXXXXXXXXHFKTVTIFKNEVQFVSRK 360 FIN+ + FF K+ LP L FYT+SK FKTV I+KN++QF+S Sbjct: 297 FINSGSLTFFNKFKTLPKLLYFYTRSKQITNLFQANVALINPQFKTVDIYKNKIQFISEN 356 Query: 361 YLLNCQTIALSWR---QDQINVNPTSFALPFYSDKIEK-QFKKSFLMLKVHTHINKLVQK 416 YLL+C+ I+L ++QI+ + T+ +D I+K + KK F++L H+ K VQ+ Sbjct: 357 YLLSCEAISLQITNRIKNQISFDFTN------ADNIQKPKPKKHFMIL--SKHLTKFVQR 408 Query: 417 LIK 419 L+K Sbjct: 409 LVK 411 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508056|ref|NP_110005.1| cell division protein FtsZ [Mycoplasma pneumoniae M129] (380 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072890.1| cell division protein (ftsZ) [Mycoplasma genita... 328 4e-092 >ref|NP_072890.1| cell division protein (ftsZ) [Mycoplasma genitalium G-37] Length = 369 Score = 328 bits (842), Expect = 4e-092, Method: Compositional matrix adjust. Identities = 160/302 (52%), Positives = 212/302 (70%), Gaps = 2/302 (0%) Query: 34 DDMLRMHPELQTANVQFFALNTDLQHLKTKRYVQNKAVIQFEESKGLGVGGDPQKGAVLA 93 D L +P L + N+ F+A+N+DLQHL K V+NK +IQ +KG G GGDP KGA LA Sbjct: 34 DASLYHYPNLASENIHFYAINSDLQHLAFKTNVKNKLLIQDHTNKGFGAGGDPAKGASLA 93 Query: 94 HHFLEQFHKLSDSFDFCILVXXXXXXXXXXXXPVFSKFLSNKGVLNLSIVSYPAMCEGLK 153 F EQF+ L+D +DFCILV PVFSK L K +LN++IV+YP++ EGL Sbjct: 94 ISFQEQFNTLTDGYDFCILVAGFGKGTGTGATPVFSKILKTKKILNVAIVTYPSLNEGLT 153 Query: 154 AREKAAKGLERLNQATDSFMLFRNDRCTDGIYQLANVAIVKTIKNIIELINLPLQQNIDF 213 R KA KGLE LN+ATDS+MLF N++CT+GIYQLAN IV IKN+IELI +PLQQNIDF Sbjct: 154 VRNKATKGLEILNKATDSYMLFCNEKCTNGIYQLANTEIVSAIKNLIELITIPLQQNIDF 213 Query: 214 EDIRSFFKKPAQRLENEANLFRVTNTFTFSFDAHNTIEHFSHKLKNFEYEGFFDHKVEGA 273 ED+R+FF+ ++ + LF VT+ F+FSFD+ ++IE F+ + KNFE +FDH + GA Sbjct: 214 EDVRAFFQ--TKKTNQDQQLFTVTHPFSFSFDSKDSIEQFAKQFKNFEKVSYFDHSIVGA 271 Query: 274 QKVILKVLVNQGLYPLDLTQIQEIIWAKIDNHNLEVQLGVDFTDANPSVQLFFLMEKKQA 333 +KV+LK +NQ + L+ QIQ+IIW KIDN+ LE++LGVDF P++Q+F L E K Sbjct: 272 KKVLLKANINQKIVKLNFKQIQDIIWTKIDNYQLEIRLGVDFVTTIPNIQIFILSEHKNP 331 Query: 334 VS 335 VS Sbjct: 332 VS 333 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508057|ref|NP_110006.1| amino acid permease [Mycoplasma pneumoniae M129] (491 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072891.1| hypothetical protein MG225 [Mycoplasma genitali... 617 e-179 ref|NP_072892.1| hypothetical protein MG226 [Mycoplasma genitali... 195 1e-051 >ref|NP_072891.1| hypothetical protein MG225 [Mycoplasma genitalium G-37] Length = 489 Score = 617 bits (1592), Expect = e-179, Method: Compositional matrix adjust. Identities = 324/489 (66%), Positives = 387/489 (79%), Gaps = 4/489 (0%) Query: 1 MAVASKKFTERQFLFFVVNYIAGFGFISTALSLFELGPLSWVIFFLVSLISLIVTLAFAR 60 M ++KF+E+QFL FVVNYIAGFGFI+TA+SLF LGP SW+IF LVSL+SLIVTL+FAR Sbjct: 1 MGQINRKFSEKQFLLFVVNYIAGFGFIATAISLFRLGPFSWLIFLLVSLVSLIVTLSFAR 60 Query: 61 VSAIDKNNYGGAYLWAKKAFNSERYSHRLFIFFTGWNNFIASPLYAAIAPLFILSAFKGI 120 +S+ID NYGG YLWAKKA + E+ + R+F FFTGWNNFI PL AA APLFIL++F GI Sbjct: 61 LSSIDSQNYGGPYLWAKKAVDKEKIAGRMFSFFTGWNNFIIGPLSAATAPLFILNSFSGI 120 Query: 121 DGIQGNAANTWILIAAGFTFYLLLAFLSTKGTSLNKKLIAVFASIKWAVLLSTLIVALIV 180 DGI+GN NTWILIA GF+FY+LLAF+STKGTSLNKKLIA+FAS+KW V+LS LIVA+ V Sbjct: 121 DGIRGNLVNTWILIAIGFSFYVLLAFISTKGTSLNKKLIALFASVKWIVILSALIVAIYV 180 Query: 181 IGKNGNGYAINNDIKQGPFKEREITLGAVATVFITFFYSYSGAEDISTMTPDVKTTNFRK 240 I ++GNGY+ NN+++ G F REI+ +ATVFITFFYSY+G EDIS MTPDVKT NFRK Sbjct: 181 IARDGNGYSQNNNLESGFFGRREISFAQIATVFITFFYSYAGVEDISVMTPDVKTNNFRK 240 Query: 241 ILIISFIAVFLFYFVGILIFNGLLNVSQSDDDKGKDGRIASVADIFRLAGGLGALIFYGV 300 ILI+SFIAVFLFYF+GI+I NGL N++Q G+ I +VADIF+ A GLG LIFYGV Sbjct: 241 ILIVSFIAVFLFYFIGIIILNGLQNIAQRG---GEANSIGNVADIFKKAAGLGTLIFYGV 297 Query: 301 GALFNNVSTRLSTIIANSRKILPLAQDNYLPTTFSKANSKGEFQNAIWFTFGTTIITMTV 360 GALFNNVSTRLSTIIANSRKILPLA DNYLP+ F K N KGEFQNAIWFTFGTT+I MT+ Sbjct: 298 GALFNNVSTRLSTIIANSRKILPLAYDNYLPSFFYKQNKKGEFQNAIWFTFGTTLIAMTL 357 Query: 361 LFFVPLITSNFDFDKSTEYASSIGSAATLVQYILVFFIIFRLIYKKEQLYQKNWTRELEQ 420 L F+PL+ SNFDFD +TEYA+S+GSAATL+QYI VFFIIF+ IYKKE LYQK W + E+ Sbjct: 358 LVFIPLVASNFDFDNATEYAASVGSAATLLQYIFVFFIIFKFIYKKEPLYQKKWVKTTEE 417 Query: 421 XXXXXXXXXXXXXXXXXXXXXXDGKTKWQLKNTLTLVVYGVLILIGFALFMTQEYK-RNK 479 DG +KW+ K+TLT+V+YGVL LIG LF+ QEYK +NK Sbjct: 418 LLFCLGTIVIVLMLLVYLFPVIDGFSKWETKHTLTIVLYGVLSLIGLVLFLLQEYKHKNK 477 Query: 480 QKESYVTPR 488 Q + T + Sbjct: 478 QNANKQTTQ 486 >ref|NP_072892.1| hypothetical protein MG226 [Mycoplasma genitalium G-37] Length = 459 Score = 195 bits (495), Expect = 1e-051, Method: Compositional matrix adjust. Identities = 124/390 (31%), Positives = 210/390 (53%), Gaps = 16/390 (4%) Query: 31 LSLFELGPLSWVIFFLVSLISLIVTLAFARVSAIDKNN-YGGAYLWAKKAFNSERYSHRL 89 +++F++GP S+++ L S L V L+F+R+S + N+ YGG+YL AKKA + + R Sbjct: 1 MTMFDVGPFSYLVLGLTSFAILGVVLSFSRLSVLCGNSAYGGSYLIAKKAVGTNSKTKRF 60 Query: 90 FIFFTGWNNFIASPLYAAIAPLFILSAFKGIDGIQGNAANTWILIAAGFTFYLLLAFLST 149 F+F +GWN + + P ++ +F I ++ N L+ GF + LL F+S Sbjct: 61 FVFLSGWNVSLTGSFNGVVIPAVLIFSFADIPVVKANNNIIIGLLVGGFLLFGLLTFISL 120 Query: 150 KGTSLNKKLIAVFASIKWAVLLSTLIVALIVIGK-NGNGYAINNDIKQGPFKEREITLGA 208 G +NKK I FA IKW V++ I+ + +IG NG G+ NN I I Sbjct: 121 FGLKINKKAIFYFAVIKWIVVIGGFILGIYLIGTTNGKGFVENNLIGT----RENIDFFK 176 Query: 209 VATVFITFFYSYSGAEDISTMTPDVKTTNFRKILIISFIAVFLFYFVGILIFNGLLNVSQ 268 + + + +++G ED++++TPDVK+ N RK +I+F V L Y VG +I +GL + Sbjct: 177 IIFISLALTIAFAGTEDLASITPDVKSNNLRKCFLIAFGCVVLLYLVGFVIISGLDGIRG 236 Query: 269 SDDDKG-KDGR-IASVADIFRLAGGLGALIFYGVGALFNNVSTRLSTIIANSRKILPLAQ 326 G KD + I + I+RL GG+ L+ YG+G L N++++RLS I +RK + LAQ Sbjct: 237 YGLALGNKDPKAINNYGSIYRLVGGVPLLVIYGLGLLVNSLASRLSMTITTARKYVALAQ 296 Query: 327 DNYLPTTFSKANSKGEFQNAIWFTFGTTIITMTVLFFVPLITSNFD--------FDKSTE 378 D +LP+ +K N E+ +A+ + T++ M ++ +P + + + ++ Sbjct: 297 DGFLPSFLAKTNKHNEYHHAVLISNLMTLLVMLIMVIIPFLPDHNNNNNSLFNAIEQLVT 356 Query: 379 YASSIGSAATLVQYILVFFIIFRLIYKKEQ 408 + +A +L+QY + F F + KKE Sbjct: 357 VTIEMAAAISLIQYFITFIFFFMIFAKKEN 386 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508058|ref|NP_110007.1| general amino acid permease GAP1 homolog; similar to Swiss-Prot Accession Number P19145, from S. cerevisiae [Mycoplasma pneumoniae M129] (503 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072892.1| hypothetical protein MG226 [Mycoplasma genitali... 431 e-123 ref|NP_072891.1| hypothetical protein MG225 [Mycoplasma genitali... 208 1e-055 >ref|NP_072892.1| hypothetical protein MG226 [Mycoplasma genitalium G-37] Length = 459 Score = 431 bits (1108), Expect = e-123, Method: Compositional matrix adjust. Identities = 244/458 (53%), Positives = 299/458 (65%), Gaps = 7/458 (1%) Query: 38 LTMFKLGPFSYXXXXXXXXXXXXVMLSFSRLSIICGSKAYGGSYLIAKKALGVKTITARF 97 +TMF +GPFSY V+LSFSRLS++CG+ AYGGSYLIAKKA+G + T RF Sbjct: 1 MTMFDVGPFSYLVLGLTSFAILGVVLSFSRLSVLCGNSAYGGSYLIAKKAVGTNSKTKRF 60 Query: 98 FTFLSGWNVSLTGPFNGLIVPAVLVLSFADIKAVKDNNXXXXXXXXXXXXXXXXXNFISL 157 F FLSGWNVSLTG FNG+++PAVL+ SFADI VK NN FISL Sbjct: 61 FVFLSGWNVSLTGSFNGVVIPAVLIFSFADIPVVKANNNIIIGLLVGGFLLFGLLTFISL 120 Query: 158 FGLKMNKNAILFFAXXXXXXXXXXXXXXXXXXXTNHGHGFVENNTLGEHIEDLSFLKVIS 217 FGLK+NK AI +FA T +G GFVENN +G E++ F K+I Sbjct: 121 FGLKINKKAIFYFAVIKWIVVIGGFILGIYLIGTTNGKGFVENNLIGTR-ENIDFFKIIF 179 Query: 218 TTVGMLVAFAGTEDLTAITPDVKSKNIRKCFLLMFGAVTLLYLIGFVIISGISGLNGYGL 277 ++ + +AFAGTEDL +ITPDVKS N+RKCFL+ FG V LLYL+GFVIISG+ G+ GYGL Sbjct: 180 ISLALTIAFAGTEDLASITPDVKSNNLRKCFLIAFGCVVLLYLVGFVIISGLDGIRGYGL 239 Query: 278 DGKEKNEKAINTFGSIYFQAGGKYLGIPLLVIFGLGFLLNSLASRLGMTITTARKYVALA 337 K+ KAIN +GSIY G G+PLLVI+GLG L+NSLASRL MTITTARKYVALA Sbjct: 240 ALGNKDPKAINNYGSIYRLVG----GVPLLVIYGLGLLVNSLASRLSMTITTARKYVALA 295 Query: 338 QDGFLPSFINEQNKHHEYHKAVWASNIMTLAVMVLMIIVPFLPNDENPGKQLVMFDAISX 397 QDGFLPSF+ + NKH+EYH AV SN+MTL VM++M+I+PFLP+ N L F+AI Sbjct: 296 QDGFLPSFLAKTNKHNEYHHAVLISNLMTLLVMLIMVIIPFLPDHNNNNNSL--FNAIEQ 353 Query: 398 XXXXXXXXXXXXSLIQYFITYIFFFMILAKKEGSASVSWWEIASYGVSFAIITVLLFVNL 457 SLIQYFIT+IFFFMI AKKE + WE SY +SFA+++VLLFV L Sbjct: 354 LVTVTIEMAAAISLIQYFITFIFFFMIFAKKENQKLIPLWEKVSYVISFALVSVLLFVPL 413 Query: 458 FPITAWKNTNTFKLSXXXXXXXXXXXXXXHSEIKHKGQ 495 FP W NTFK+ ++E K+K + Sbjct: 414 FPFNQWTVFNTFKIVVLICFYLLGVGFFGYAEWKNKNK 451 >ref|NP_072891.1| hypothetical protein MG225 [Mycoplasma genitalium G-37] Length = 489 Score = 208 bits (529), Expect = 1e-055, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 196/373 (52%), Gaps = 14/373 (3%) Query: 13 QQFSEKQFIAFAFNYVAGFGFISVVLTMFKLGPFSYXXXXXXXXXXXXVMLSFSRLSIIC 72 ++FSEKQF+ F NY+AGFGFI+ +++F+LGPFS+ V LSF+RLS I Sbjct: 6 RKFSEKQFLLFVVNYIAGFGFIATAISLFRLGPFSWLIFLLVSLVSLIVTLSFARLSSI- 64 Query: 73 GSKAYGGSYLIAKKALGVKTITARFFTFLSGWNVSLTGPFNGLIVPAVLVLSFADIKAVK 132 S+ YGG YL AKKA+ + I R F+F +GWN + GP + P ++ SF+ I ++ Sbjct: 65 DSQNYGGPYLWAKKAVDKEKIAGRMFSFFTGWNNFIIGPLSAATAPLFILNSFSGIDGIR 124 Query: 133 DNNXXXXXXXXXXXXXXXXXNFISLFGLKMNKNAILFFAXXXXXXXXXXXXXXXXXXXTN 192 N FIS G +NK I FA + Sbjct: 125 GNLVNTWILIAIGFSFYVLLAFISTKGTSLNKKLIALFASVKWIVILSALIVAIYVIARD 184 Query: 193 HGHGFVENNTLGEHI---EDLSFLKVISTTVGMLVAFAGTEDLTAITPDVKSKNIRKCFL 249 G+G+ +NN L ++SF ++ + + ++AG ED++ +TPDVK+ N RK + Sbjct: 185 -GNGYSQNNNLESGFFGRREISFAQIATVFITFFYSYAGVEDISVMTPDVKTNNFRKILI 243 Query: 250 LMFGAVTLLYLIGFVIISGISGLNGYGLDGKEKNEKAINTFGSIYFQAGGKYLGIPLLVI 309 + F AV L Y IG +I++G+ + G E N +I I+ +A G + L+ Sbjct: 244 VSFIAVFLFYFIGIIILNGLQNI---AQRGGEAN--SIGNVADIFKKAAG----LGTLIF 294 Query: 310 FGLGFLLNSLASRLGMTITTARKYVALAQDGFLPSFINEQNKHHEYHKAVWASNIMTLAV 369 +G+G L N++++RL I +RK + LA D +LPSF +QNK E+ A+W + TL Sbjct: 295 YGVGALFNNVSTRLSTIIANSRKILPLAYDNYLPSFFYKQNKKGEFQNAIWFTFGTTLIA 354 Query: 370 MVLMIIVPFLPND 382 M L++ +P + ++ Sbjct: 355 MTLLVFIPLVASN 367 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508059|ref|NP_110008.1| thymidylate synthase [Mycoplasma pneumoniae M129] (328 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072893.1| thymidylate synthase (thyA) [Mycoplasma genital... 451 e-129 >ref|NP_072893.1| thymidylate synthase (thyA) [Mycoplasma genitalium G-37] Length = 287 Score = 451 bits (1159), Expect = e-129, Method: Compositional matrix adjust. Identities = 213/287 (74%), Positives = 247/287 (86%) Query: 42 MQQYLDLARYVLEHGKYRPNRTDTAGIGVFGYQMHFDISKHFPLLTTKKVHWKSIVHELL 101 M+QYLDLA YVL +GK R NRTDT + VFGYQM FD++ FPLLTTKKV+WK+IVHELL Sbjct: 1 MKQYLDLASYVLANGKKRKNRTDTDTLSVFGYQMKFDLTNSFPLLTTKKVNWKAIVHELL 60 Query: 102 WFIKGDTNIKYLVDNKVNIWNEWPYESFKKSPHFNGESQKEFIERIRQDAKFAQQFGNLG 161 WFIKGDTNIKYLVDN VNIWNEWPYE+FKKSP F E+ +EFI +++ D +FA+QF +LG Sbjct: 61 WFIKGDTNIKYLVDNGVNIWNEWPYENFKKSPSFQNETLQEFILKVKTDNEFAKQFADLG 120 Query: 162 PVYGKQWRDFNGVDQLKKVIAQIKVNPFSRRLIVSSWNPNEVDQMLLPPCHSLYQFYVQD 221 PVYGKQWR+FNGVDQLKKVI +IK NP SRRLIVSSWNP+E+++M L PCHSL+QFYV++ Sbjct: 121 PVYGKQWRNFNGVDQLKKVIQEIKENPNSRRLIVSSWNPSELEKMALAPCHSLFQFYVEE 180 Query: 222 GQLSCQLYQRSGDIFLGIPFNIASYSLLVYLVAKETNLKPGSFVHTIGDAHIYENHLEQI 281 +LS QLYQRSGDIFLG+PFNIASY+LLVYLVA ET LKPG F+HT+GDAHIYENH+EQI Sbjct: 181 DKLSLQLYQRSGDIFLGVPFNIASYALLVYLVAHETKLKPGYFIHTLGDAHIYENHIEQI 240 Query: 282 KLQLTRQPKPLPKVVLKSDKSIFDYQFDDIELVDYDHHPTIKGEVAV 328 KLQLTR P+VVLKSDKSIF Y FDDIELV Y++HP I G VAV Sbjct: 241 KLQLTRTTLDPPQVVLKSDKSIFAYSFDDIELVGYNYHPFIYGRVAV 287 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508060|ref|NP_110009.1| dihydrofolate reductase (EC 1.5.1.3) [Mycoplasma pneumoniae M129] (160 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072894.1| dihydrofolate reductase (dhfR) [Mycoplasma geni... 174 4e-046 >ref|NP_072894.1| dihydrofolate reductase (dhfR) [Mycoplasma genitalium G-37] Length = 160 Score = 174 bits (441), Expect = 4e-046, Method: Compositional matrix adjust. Identities = 82/157 (52%), Positives = 107/157 (68%) Query: 1 MVKAIWAMDQNGLIGNGNSLPWRIKAELQHFRQTTLHQDVLMGSATYLSLPPVFSERNVY 60 M+ AIWAM Q GLIGN N+LPW IK EL HF++TTL Q +LMG TY SLP VF +R ++ Sbjct: 1 MLIAIWAMTQEGLIGNNNTLPWMIKQELAHFKKTTLFQALLMGRKTYESLPKVFEKRTIF 60 Query: 61 ILTRNLNFNPPDKGCLTKVIHEYENFIQPYLHHPDKHLYICGGAQVYEQLIPRCDALIVS 120 +L+++ N+ +KG KVI+++ I+ Y + +K L+ICGG VYEQ I CD LIVS Sbjct: 61 LLSKDQNYRFEEKGSEVKVINDFWPLIKSYQANKEKDLFICGGKSVYEQTINECDQLIVS 120 Query: 121 TIFGKYTGDKYLKVDFSPFELTKEISFAEFKVAYYHK 157 I KY GD++LKVD S F L + + F EF V YY K Sbjct: 121 IIKKKYKGDQFLKVDLSKFVLNEVVEFEEFNVNYYRK 157 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508061|ref|NP_110010.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma pneumoniae M129] (339 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072895.1| ribonucleoside-diphosphate reductase, beta chai... 562 e-162 >ref|NP_072895.1| ribonucleoside-diphosphate reductase, beta chain (nrdF) [Mycoplasma genitalium G-37] Length = 340 Score = 562 bits (1448), Expect = e-162, Method: Compositional matrix adjust. Identities = 274/338 (81%), Positives = 286/338 (84%) Query: 2 ANTKKYFLESVSPLEYAQKKFQGNLRSVNWNLVDDEKDLEVWNRITQNFWLPEKIPVSND 61 AN KKYFLES SPL Y + FQGNLRSVNWNLVDDEKDLEVWNRI QNFWLPEKIPVSND Sbjct: 3 ANNKKYFLESFSPLGYVKNNFQGNLRSVNWNLVDDEKDLEVWNRIVQNFWLPEKIPVSND 62 Query: 62 IPSWKQLSKEWQDLITKTFTGLTLLDTIQATIGDIKQIDYALTDHEQVIYANFAFMVGVH 121 IPSWK+LSK+WQDLITKTFTGLTLLDTIQATIGDI QID+ALTDHEQVIYANFAFMVGVH Sbjct: 63 IPSWKKLSKDWQDLITKTFTGLTLLDTIQATIGDICQIDHALTDHEQVIYANFAFMVGVH 122 Query: 122 ARSYGTIFSTLCTSEQITEAHEWVVKTESLQKRAKALIPYYTGKDPLKSKVAAALMXXXX 181 ARSYGTIFSTLCTSEQI AHEWVV TESLQKRAKALIPYYTG DPLKSKVAAALM Sbjct: 123 ARSYGTIFSTLCTSEQINAAHEWVVNTESLQKRAKALIPYYTGNDPLKSKVAAALMPGFL 182 Query: 182 XXXXXXXXXXXSSRKQLPNTSDIIRLILRDKVIHNYYSGYKFQRKVEKMSKEKQAEMKRF 241 SSRKQLPNTSDIIRLILRDKVIHNYYSGYK+QRK+EK+ KQ EMK F Sbjct: 183 LYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYKYQRKLEKLPLAKQKEMKAF 242 Query: 242 VFDLMXXXXXXXXXXXXXXXXGFGIVEDAIKFSIYNAGKFLQNLGYDSPFTEEETRIKPE 301 VF+LM GFGIV+DAIKFS+YNAGKFLQNLGYDSPFT ETRIKPE Sbjct: 243 VFELMYRLIELEKDYLKELYEGFGIVDDAIKFSVYNAGKFLQNLGYDSPFTAAETRIKPE 302 Query: 302 IFAQLSARADENHDFFSGNGSSYVMGISEETEDKDWDF 339 IFAQLSARADENHDFFSGNGSSYVMG+SEET D DW+F Sbjct: 303 IFAQLSARADENHDFFSGNGSSYVMGVSEETNDDDWNF 340 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508062|ref|NP_110011.1| probably nrdI [Mycoplasma pneumoniae M129] (153 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072896.1| nrdI protein (nrdI) [Mycoplasma genitalium G-37] 239 1e-065 >ref|NP_072896.1| nrdI protein (nrdI) [Mycoplasma genitalium G-37] Length = 153 Score = 239 bits (609), Expect = 1e-065, Method: Compositional matrix adjust. Identities = 111/149 (74%), Positives = 127/149 (85%) Query: 1 MHKDIKIVDASAIVKPTGTPYVVYFSSISNNTHRFIEKLEFEHTRIPVNLDEQIEVNQEY 60 MHKDIK+V + I KP G+P++VYFSSISNNTHRFIEKL F+H RIPV++ + I V+ EY Sbjct: 1 MHKDIKLVKETEIRKPIGSPFIVYFSSISNNTHRFIEKLGFQHKRIPVDITQSITVSNEY 60 Query: 61 VLFCPTYSGGGEYTSGAVPKQVIHFLNNKHNRDLCRGVISSGNTNFGNTFAIAGPILSKK 120 VL CPTYSGGG GAVPKQVI FLNNKHNR+LCRGVI+SGNTNFG+TF +AG ++SKK Sbjct: 61 VLICPTYSGGGNQVEGAVPKQVIQFLNNKHNRELCRGVIASGNTNFGDTFCLAGTVISKK 120 Query: 121 LNVPLLYQFELLGTKNDVEQVQTIITNFF 149 LNVPLLYQFELLGTKNDVEQ Q II NFF Sbjct: 121 LNVPLLYQFELLGTKNDVEQTQKIIANFF 149 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508063|ref|NP_110012.1| ribonucleoside-diphosphate reductase alpha chain) [Mycoplasma pneumoniae M129] (721 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072897.1| ribonucleoside-diphosphate reductase, alpha cha... 1330 0.0 >ref|NP_072897.1| ribonucleoside-diphosphate reductase, alpha chain (nrdE) [Mycoplasma genitalium G-37] Length = 721 Score = 1330 bits (3442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 629/721 (87%), Positives = 680/721 (94%) Query: 1 MSVKEKIPAFNTQEDLESYISLNAYTKVYGDFKMDLHAVEAYIQEHVKPKTKVFHSTKER 60 M+ KEKIP FNT+ED+ESYIS NA K+Y DF +DL AVE+YIQEHVKPKTKVFHSTKER Sbjct: 1 MTSKEKIPTFNTEEDVESYISFNAQAKIYDDFAIDLQAVESYIQEHVKPKTKVFHSTKER 60 Query: 61 LDFLVKNDYYDENIINMYSFEQFEEITRKAYAYRFRYANFMGAFKFYNAYALKTFDGKWY 120 LDFL+KNDYYDE IINMYSFEQFEEIT KAY+YRFRYANFMGAFKFYNAYALKTFDGK+Y Sbjct: 61 LDFLIKNDYYDEKIINMYSFEQFEEITHKAYSYRFRYANFMGAFKFYNAYALKTFDGKYY 120 Query: 121 LENYEDRVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVSCYLLR 180 LENYEDRVVMNVL LANGN+NKALKLLKQII NRFQPATPTFLNAGRKKRGEFVSCYLLR Sbjct: 121 LENYEDRVVMNVLMLANGNFNKALKLLKQIILNRFQPATPTFLNAGRKKRGEFVSCYLLR 180 Query: 181 IEDNMESIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSGIIPIMKLLEDSF 240 IEDNMESIGRAITTTLQLSKRDGGVALLL+N+RE+GAPIKKIENQSSGIIPIMKLLEDSF Sbjct: 181 IEDNMESIGRAITTTLQLSKRDGGVALLLSNLREAGAPIKKIENQSSGIIPIMKLLEDSF 240 Query: 241 SYANQLGQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFTLAKN 300 SY+NQLGQRQGAGAVYLH HHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITF LAKN Sbjct: 241 SYSNQLGQRQGAGAVYLHCHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFQLAKN 300 Query: 301 NEEMALFSPYDVYEEYGKPLSDISVTEMYYELLANQRIKKTFINARKFFQTVAELHFESG 360 NE MALFSPYD+Y+EYGK LSDISVTEMYYELL NQRIKKTFI+ARKFFQT+AELHFESG Sbjct: 301 NEMMALFSPYDIYQEYGKALSDISVTEMYYELLENQRIKKTFISARKFFQTIAELHFESG 360 Query: 361 YPYILFDDTVNRRNAHPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDISCNLGSLNI 420 YPYILFDDTVNRRNAH NRIVMSNLCSEIVQPS PSEF+ DL FKKVG+DISCNLGSLNI Sbjct: 361 YPYILFDDTVNRRNAHKNRIVMSNLCSEIVQPSLPSEFYSDLTFKKVGSDISCNLGSLNI 420 Query: 421 AKAMESGPEFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALGLGAMNLHGFLATN 480 A+AMESG E +EL++LAIESLDLVSR+S+LETAPSI+KGNSENHALGLGAMNLHGFLATN Sbjct: 421 ARAMESGSELAELIQLAIESLDLVSRISSLETAPSIKKGNSENHALGLGAMNLHGFLATN 480 Query: 481 QIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFADGSYFDKYIKVEP 540 IYY+S EA+DFTNIFFYTVAYHAF AS++LALE GKFK+FENTKFADGSYFDKY KV Sbjct: 481 AIYYDSKEAVDFTNIFFYTVAYHAFSASNKLALELGKFKDFENTKFADGSYFDKYTKVAS 540 Query: 541 DFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAIAPTGSISYLSSCT 600 DFWT KTE+V+ALF KYQV+IPT+ENWK+L +IQK+GLANSHL+AIAPTGSISYLSSCT Sbjct: 541 DFWTCKTEKVQALFDKYQVKIPTQENWKQLVASIQKDGLANSHLMAIAPTGSISYLSSCT 600 Query: 601 PSLQPVVSPVEVRKEGRLGRIYVPAYQLNKDSYPFYKDGAYELGPEPIINIAAAAQQHVD 660 PSLQPVVSPVEVRKEG+LGRIYVPAY+L+ D+Y ++KDGAYELG EPIINI AAAQQHVD Sbjct: 601 PSLQPVVSPVEVRKEGKLGRIYVPAYKLDNDNYQYFKDGAYELGFEPIINIVAAAQQHVD 660 Query: 661 QAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQEVLEDSEDHTIQMQQCEACV 720 QAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQ+VL+DSEDHTI+++ CE C Sbjct: 661 QAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQDVLKDSEDHTIKIKDCEVCS 720 Query: 721 I 721 I Sbjct: 721 I 721 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508064|ref|NP_110013.1| ribosomal protein L21 [Mycoplasma pneumoniae M129] (100 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072898.1| ribosomal protein L21 (rpL21) [Mycoplasma genit... 174 3e-046 >ref|NP_072898.1| ribosomal protein L21 (rpL21) [Mycoplasma genitalium G-37] Length = 100 Score = 174 bits (440), Expect = 3e-046, Method: Compositional matrix adjust. Identities = 82/100 (82%), Positives = 93/100 (93%) Query: 1 MHAIVVCGSKQYLVHENDTFFVEKLEAPVGKEIQLDKVLMLDEKIGAPYLEKARVVCVVE 60 MHAIVVCG+KQYLVHEN++ FVEKL VG+EIQLDKVLMLDEKIG PYLEKA+VVCV+E Sbjct: 1 MHAIVVCGAKQYLVHENESIFVEKLAGKVGQEIQLDKVLMLDEKIGKPYLEKAKVVCVIE 60 Query: 61 KHGLQRKVNVIKHISQKHHLKKYGHRQPYTKLKVVRFVHD 100 KHGL+ K+ +IKHISQKHHLK+YGHRQPYTKLKVVRF+HD Sbjct: 61 KHGLKSKIKLIKHISQKHHLKRYGHRQPYTKLKVVRFIHD 100 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508065|ref|NP_110014.1| hypothetical protein MPN326 [Mycoplasma pneumoniae M129] (100 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072899.1| hypothetical protein MG233 [Mycoplasma genitali... 108 1e-026 >ref|NP_072899.1| hypothetical protein MG233 [Mycoplasma genitalium G-37] Length = 99 Score = 108 bits (271), Expect = 1e-026, Method: Compositional matrix adjust. Identities = 48/96 (50%), Positives = 68/96 (70%) Query: 1 MIKLTVSHHKLTASGHALFAKKGQDIVCAAVSGIIFGALPWFETNSIAVQEDATVPSLSL 60 MIK+ +S + L A GHALFA+KG+DIVCAA+SGIIFG + WFE + I E+ VPS++L Sbjct: 1 MIKINISQNFLVAKGHALFAEKGKDIVCAAISGIIFGGVAWFEPDKIEFTENKLVPSIAL 60 Query: 61 ELVQPTAKLITGLSVVIMQLKTLAHSYPQFISFEDQ 96 +L+ PT + SV+ +QLK +A+SYP I ++ Sbjct: 61 KLIDPTPNVAVAFSVITVQLKAIANSYPNHIVINEE 96 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508066|ref|NP_110015.1| ribosomal protein L27 [Mycoplasma pneumoniae M129] (104 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072900.1| ribosomal protein L27 (rpL27) [Mycoplasma genit... 163 3e-043 >ref|NP_072900.1| ribosomal protein L27 (rpL27) [Mycoplasma genitalium G-37] Length = 104 Score = 163 bits (413), Expect = 3e-043, Method: Compositional matrix adjust. Identities = 75/104 (72%), Positives = 93/104 (89%) Query: 1 MNNKYFLTKIDLQFFASKKGVGSTKNGRDSHAKRLGAKKADGQMIRTGQIIYRQRGTRVY 60 M+ + +I+LQFFASKKGVGSTKNGRDSH+KRLGAKKADGQMIR GQIIYRQRGT+++ Sbjct: 1 MSKNSYCYQINLQFFASKKGVGSTKNGRDSHSKRLGAKKADGQMIRVGQIIYRQRGTKIF 60 Query: 61 PGVNVGLGSDDTLFALSDGLVKYQKFGPKQGKTRVSVVKHKLDA 104 G NV +GSD+TLFALSDG+V++QKFG KQ KTRV+++KH+L+A Sbjct: 61 AGQNVAMGSDNTLFALSDGIVRFQKFGSKQSKTRVNIIKHQLNA 104 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508067|ref|NP_110016.1| endonuclease IV [Mycoplasma pneumoniae M129] (286 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072901.1| endonuclease IV, putative [Mycoplasma genitaliu... 404 e-115 >ref|NP_072901.1| endonuclease IV, putative [Mycoplasma genitalium G-37] Length = 291 Score = 404 bits (1039), Expect = e-115, Method: Compositional matrix adjust. Identities = 187/283 (66%), Positives = 227/283 (80%) Query: 1 MPKLLGSFISFKSPHYLVGSVRDAVSIKAQAFMIFLGAPHTALRVDPNRMQIDEGHTLME 60 MPKLLGSFISFK+P+Y V S +DA++I A A M+FLG PH+A RV N+MQ G+ L++ Sbjct: 1 MPKLLGSFISFKAPNYFVQSAQDAIAIDATALMVFLGPPHSAYRVPFNKMQFSLGYELLK 60 Query: 61 QHNLSKSGMVVHAPYIINCASKDPVKQTFAIDVLTREVKLCHAVGAKLIVLHPGSAVEQT 120 N++ +G+VVHAPYIINCASKDP+KQ AI VLT E++LC+ GA +VLHPGSAV QT Sbjct: 61 TKNINSNGLVVHAPYIINCASKDPLKQQNAISVLTNEIQLCNLAGAHYLVLHPGSAVAQT 120 Query: 121 QTQALDHLIKVLNTVIANTKEVIICLETMAGKGNEIGRDLDQLKYVINHIEQQERIGVCL 180 +ALD+L+KVLN VI TK +ICLETMAGKGNEIGRDL +LKYVI+ I ++RIGVCL Sbjct: 121 TNEALDNLVKVLNQVINKTKTTVICLETMAGKGNEIGRDLTELKYVIDRIVDKDRIGVCL 180 Query: 181 DTCHFHDSGNDFNNTAEIMETIDTKLGFEFLKVIHLNESKNVCGSKKDRHANLGEGMIGF 240 DTCHFHDSG DF++ + TI TKLGFEFLKVIHLNESKN CGSKKDRHAN+ GMIGF Sbjct: 181 DTCHFHDSGIDFSDLTGVFNTITTKLGFEFLKVIHLNESKNNCGSKKDRHANINAGMIGF 240 Query: 241 DNLMRFIAQPQIKQIPIVLETPSDKHNYPAVYGAEIERIRAWF 283 +NLM+FI+ PQIK +PI+LETPS NYP +Y EI +IR+WF Sbjct: 241 ENLMKFISHPQIKDLPIILETPSTSLNYPTIYREEISQIRSWF 283 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508068|ref|NP_110017.1| Ferric uptake regulator (Koonin for MG homologue) [Mycoplasma pneumoniae M129] (158 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072902.1| hypothetical protein MG236 [Mycoplasma genitali... 173 7e-046 >ref|NP_072902.1| hypothetical protein MG236 [Mycoplasma genitalium G-37] Length = 140 Score = 173 bits (439), Expect = 7e-046, Method: Compositional matrix adjust. Identities = 79/139 (56%), Positives = 105/139 (75%) Query: 19 LKDYISVFERNKMRLTQSRLMLLQCLVQHRDWHTLAELKHHLEQNQQRTTLASIYNNLKI 78 L Y+ V E+N +RLT+ R+ LL+CL++H+DWH L+++K HL+ Q +TLASIYNNL+I Sbjct: 2 LTSYVKVLEQNNLRLTKPRIALLKCLIEHQDWHNLSQIKTHLDLANQPSTLASIYNNLRI 61 Query: 79 FAKLKLINIFVDTNRFETYYCLRHENHKHIYFFDENQRKFLTLPLQDKEALSLIGHKSKH 138 AKLKLINIFVD RFETYYCLRH H HIY FDE +++F TLPL D + +L+ ++ Sbjct: 62 LAKLKLINIFVDPERFETYYCLRHAEHNHIYLFDEVKQQFFTLPLTDGQIKTLLETQNHT 121 Query: 139 GKIKLNDFYIVASGTLEDD 157 K+KLNDFYIVA G + +D Sbjct: 122 SKVKLNDFYIVARGEINND 140 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508069|ref|NP_110018.1| hypothetical protein MPN330 [Mycoplasma pneumoniae M129] (294 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072903.1| hypothetical protein MG237 [Mycoplasma genitali... 390 e-111 >ref|NP_072903.1| hypothetical protein MG237 [Mycoplasma genitalium G-37] Length = 294 Score = 390 bits (1002), Expect = e-111, Method: Compositional matrix adjust. Identities = 190/294 (64%), Positives = 232/294 (78%) Query: 1 MINKPNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKDF 60 MINKPNQF+NHL LK+HF+ Y L+++F Y N EL FF +QF+K++ LVK+K+F Sbjct: 1 MINKPNQFLNHLDGLKQHFSDYDSLQKSFKKYLSENQTELNNFFFNQFEKIIVLVKKKEF 60 Query: 61 KTAQSRCEEELAAPYLPKPLVSFFQSLLQLVNHDLLEQQNAALASLPAAKIIELVLQDYP 120 KTAQ RCEEELA PY KPLV FFQSLLQL+NHDL+EQ+N LA++ KI+E+VL DYP Sbjct: 61 KTAQERCEEELATPYFSKPLVGFFQSLLQLINHDLIEQKNQQLANMSCEKIVEMVLSDYP 120 Query: 121 NKLNMIHYLLPKTKAFVKPHLLQRLQFVLTDSELLELKRFSFFQALNQIPGFQGEQVEYF 180 NKLN+IHYLL K +FV P+LLQR+ FVLTD ELLELKRFSFF+ALNQIP F+ +V YF Sbjct: 121 NKLNLIHYLLAKEASFVNPNLLQRMTFVLTDLELLELKRFSFFKALNQIPAFKNHKVTYF 180 Query: 181 NSKLKQKFTLTLGEFEIAQQPDAKAYFEQLITQIQQLFLKEPVNAEFANEIIDAFLVSYF 240 NSKLKQKF +TLGEF Q K +F+QLI ++ QLFLKEPV+ EFA EIIDA LVS+F Sbjct: 181 NSKLKQKFVITLGEFAFPQTDKTKQFFQQLIKKVSQLFLKEPVSCEFAYEIIDALLVSFF 240 Query: 241 PLHPPVPLAQLAAKIYEYVSQIVLNEAVNLKDELIKLIVHTLYEQLDRPVGDEN 294 PLHP + + LA KI++YVS+IV+NE V+LKD KLIV TLYEQLDR +G+EN Sbjct: 241 PLHPNLEVNHLAKKIHQYVSKIVINEVVDLKDPTTKLIVDTLYEQLDRAIGEEN 294 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508070|ref|NP_110019.1| trigger factor [Mycoplasma pneumoniae M129] (444 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072904.1| trigger factor (tig) [Mycoplasma genitalium G-37] 593 e-171 >ref|NP_072904.1| trigger factor (tig) [Mycoplasma genitalium G-37] Length = 444 Score = 593 bits (1529), Expect = e-171, Method: Compositional matrix adjust. Identities = 278/444 (62%), Positives = 358/444 (80%) Query: 1 MKQYKLVNTTQKEKTLCLEIAIDTKLWKETQQKQTQDLTKNMKIKGFRKGKVPPTLAKDY 60 MK YK++N+ +K+LCLE+ ID W+ TQ+K ++ K++KIKGFR GK+PP LA Sbjct: 1 MKLYKVLNSKTTDKSLCLEVEIDPNYWQATQKKLVGEMAKSIKIKGFRPGKIPPNLASQS 60 Query: 61 LDRAELLQRSAQAVIDAIFQPLQQEAVIADNENVIEDFPTIDFKTINENDCVILFDFDLV 120 +++AEL+Q+SAQ V+++I++ +QQE ++A N+NVI+D+PTIDFKTI E +CV+LF FDL+ Sbjct: 61 INKAELMQKSAQNVMNSIYESVQQEEIVASNDNVIDDYPTIDFKTITEQNCVLLFYFDLI 120 Query: 121 PQFEPPDYKHIKDLSPIVPLKDEEFNKELHNIEKNKGKLVDVSDKALANNDIAVIDFVGK 180 P F+ PDYK IKDL+P+ L + EFN E+ + K K +VDVSDK LAN DIA+IDF G Sbjct: 121 PNFQLPDYKKIKDLTPLTKLTEAEFNNEIEKLAKTKSTMVDVSDKKLANGDIAIIDFTGI 180 Query: 181 VDGKVLESATAKQYELTIGSNSFIDGFESGLIGMKVGDKRQLKLKFPKDYHAEELKGKPV 240 VD K L SA+A+ YELTIGSNSFI GFE+GLI MKV K+ L L FP DYH +EL+ KPV Sbjct: 181 VDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKELQSKPV 240 Query: 241 EFDIELKAIKQLEITPMDETNFKEYLPAQYQGFNSLKEFKTYFHKLVSAKKLEITLQENS 300 F++ LKAIK+LE TPMDETNFK +LP Q+Q F SLK FK+YFHKL+ KK E LQEN+ Sbjct: 241 TFEVVLKAIKKLEFTPMDETNFKSFLPEQFQSFTSLKAFKSYFHKLMENKKQETILQENN 300 Query: 301 VKIRQFFLANTTLPYIPDSLIKLESDRLLRAQKDQAEQYKIPFERLLAASKLSLEQLQQR 360 KIRQF L NT LP++P++LIKLE++RLL+ Q+ QAEQYKIPFE+LL+AS ++L +LQ R Sbjct: 301 QKIRQFLLTNTKLPFLPEALIKLEANRLLKLQQSQAEQYKIPFEKLLSASNITLTELQDR 360 Query: 361 NIKEARDNVTFALVMKRIADVEKIKVDNKKIHSEIESIIDVEYPFVNAELKKQMFHNMEQ 420 NIKEA++NVTFALVMK+IAD+EKIKVDN KI +EIE++I VEYPF + E+KKQ+F NMEQ Sbjct: 361 NIKEAKENVTFALVMKKIADIEKIKVDNNKIKAEIENVIAVEYPFASDEMKKQLFFNMEQ 420 Query: 421 QKDFVESIILNRLTTTKIIEYSTH 444 QK+FVESII+NRLTTTKI+ YSTH Sbjct: 421 QKEFVESIIINRLTTTKIVSYSTH 444 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508071|ref|NP_110020.1| ATP-dependent protease Lon [Mycoplasma pneumoniae M129] (795 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072905.1| ATP-dependent protease La (lon) [Mycoplasma gen... 1262 0.0 >ref|NP_072905.1| ATP-dependent protease La (lon) [Mycoplasma genitalium G-37] Length = 795 Score = 1262 bits (3265), Expect = 0.0, Method: Compositional matrix adjust. Identities = 609/795 (76%), Positives = 699/795 (87%) Query: 1 MPAVKKPQILVVRNQVIFPYNGFELDVGRERSKKLIKALKNLKTKRLVLVTQKNSDQLNP 60 MP KK QILVVR QVIFP+ F LDVGR RS+K+IKALK LKTKRLVLVTQK + + NP Sbjct: 1 MPVTKKSQILVVRGQVIFPFVPFSLDVGRPRSRKIIKALKTLKTKRLVLVTQKFTGEQNP 60 Query: 61 EFDDIYHCGTLCDIDEIIEVPSEDGKTADYKIKGKGLQRVAITSFSDADLTKYDHHFLNS 120 EF+DIYH GTLC+IDEI++VP D KT DY+IKG+GLQRV I FSDAD+ + + LNS Sbjct: 61 EFNDIYHVGTLCEIDEIVDVPGVDSKTVDYRIKGRGLQRVLIEKFSDADINEVSYQLLNS 120 Query: 121 TLTENKALDKLLERIFPDKEDFAEILDSLNSFLELQELKKLSKVPKDIKRYDIITFKLAS 180 T+ + +D+ L+RIFP+KE+ ++++ FLEL+ + K VPK +K+ DIITFKLA+ Sbjct: 121 TVKDEANVDRFLQRIFPEKEEIEQLMEGAEKFLELENISKTVNVPKGLKQLDIITFKLAN 180 Query: 181 LIFKDITLQQAILEENDIEKRLQKIIGSGIEDLGHISEEARAKQRESEFDKIDNRITRKV 240 L+ +++QAILEEN+I RL+KII +GIEDL I + R+K +E+EFDK+D++ITRK+ Sbjct: 181 LVPNTESIKQAILEENEIANRLEKIIQAGIEDLQKIQDYGRSKNKETEFDKLDSKITRKI 240 Query: 241 NEQLSRQQRDFYLREKLRVIREEIGMTSKKEDEVSNIRKKLEENPYPEHIKKRILSELDH 300 NEQLSRQQRDFYLREKLR+IREEIG++SKKEDEV++IRKKL+ENPYPE IKKRILSEL+H Sbjct: 241 NEQLSRQQRDFYLREKLRIIREEIGISSKKEDEVASIRKKLDENPYPEAIKKRILSELEH 300 Query: 301 FENXXXXXQESTLTKTYIDTLMNLPWWQESKDNADVKNLIKILNKNHSGLDKVKERVVEY 360 +EN QESTLTKTYIDTL+NLPWWQ+SKDN+DVKNLIK L+KNH+GLDKVKER+VEY Sbjct: 301 YENSSSSSQESTLTKTYIDTLLNLPWWQKSKDNSDVKNLIKTLDKNHTGLDKVKERIVEY 360 Query: 361 LAVQLRTKKLKGPIMCLVGPPGVGKSSLAKSIAEALNKCFVKVSLGGVHDESEIRGHRKT 420 LAVQLRT+K KGPIMCLVGPPGVGKSSLAKSIAEAL+K FVK+SLGGVHDESEIRGHRKT Sbjct: 361 LAVQLRTQKNKGPIMCLVGPPGVGKSSLAKSIAEALDKKFVKISLGGVHDESEIRGHRKT 420 Query: 421 YLGSMPGRILKGMVRAKVINPLFLLDEIDKMTSSNQGYPSGALLEVLDPELNNKFSDNYV 480 YLGSMPGRILKGM RAKVINPLFLLDEIDKMTSSNQGYPSGALLEVLDPELNNKFSDNYV Sbjct: 421 YLGSMPGRILKGMTRAKVINPLFLLDEIDKMTSSNQGYPSGALLEVLDPELNNKFSDNYV 480 Query: 481 EEDYDLSKVMFVATANYIEDIPEALLDRMEVIELTSYTEQEKLQITKSHLVKRCLDDAEI 540 EEDYDLSKVMF+ATANYIEDIPEALLDRME+IELTSYTEQEK++I K+HL+KRCL+DA++ Sbjct: 481 EEDYDLSKVMFIATANYIEDIPEALLDRMEIIELTSYTEQEKIEIAKNHLIKRCLEDADL 540 Query: 541 KTDDLKFTDEGISYIIKFYTREAGVRQLERLIQQIVRKYIVNLQKTGEQQXXXXXXXXXX 600 +++LKFTDE ISYIIKFYTREAGVRQLERLIQQ+VRKYIV +QK G +Q Sbjct: 541 NSEELKFTDEAISYIIKFYTREAGVRQLERLIQQVVRKYIVAMQKDGIKQETIDVNAVKK 600 Query: 601 XXXXEIFDYTVRDEDALPGIVNGMAYTPTGGDLLPIEVTHVAGKGDLILTGNLKQTMRES 660 EIFD+T+RDE +LPGIVNGMAYTPTGGDLLPIEVTHVAGKG+LILTGNLKQTMRES Sbjct: 601 YLKKEIFDHTMRDEVSLPGIVNGMAYTPTGGDLLPIEVTHVAGKGELILTGNLKQTMRES 660 Query: 661 ASVALGYVKANAQSFNINPNLFKKVDINIHVPGGGIPKDGPSAGAALVTAIISSLTGKKV 720 A+VALGYVKANA+ FNINP+LFKK+DINIHVPGGGIPKDGPSAGAALVTAIISSLTGKKV Sbjct: 661 ANVALGYVKANAERFNINPSLFKKIDINIHVPGGGIPKDGPSAGAALVTAIISSLTGKKV 720 Query: 721 DPKIAMTGEITLRGKVMTIGGVKEKTISAYRGGVRTIFMPEKNERYLDEVPKDIVKDLEI 780 DP +AMTGEITLRGKV+ IGGVKEKTISAYRGGV TIFMPEKNERYLDEVPK+IV L I Sbjct: 721 DPTVAMTGEITLRGKVLVIGGVKEKTISAYRGGVTTIFMPEKNERYLDEVPKEIVDKLNI 780 Query: 781 ILVKEYKDIYNKIFN 795 I VKEY DIYNK+F+ Sbjct: 781 IFVKEYSDIYNKLFS 795 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508072|ref|NP_110021.1| hypothetical protein MPN333 [Mycoplasma pneumoniae M129] (750 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508073|ref|NP_110022.1| ABC transporter ATP-binding protein [Mycoplasma pneumoniae M129] (326 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasm... 68 1e-013 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 68 1e-013 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 67 3e-013 ref|NP_072781.1| galactoside ABC transporter, ATP-binding protei... 65 1e-012 ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding prote... 62 9e-012 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 61 1e-011 >ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 245 Score = 68.2 bits (165), Expect = 1e-013, Method: Compositional matrix adjust. Identities = 52/231 (22%), Positives = 106/231 (45%), Gaps = 13/231 (5%) Query: 13 EKEFGFWRKNRILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFKDEINIDGIS 72 EK ++K +L++++F +M E +G++G GK++ + + ++ + DG++ Sbjct: 10 EKVSIIYKKAPLLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVYFDGVA 69 Query: 73 NKNAKSKGVISYIPEYAVFPKHLNTHEYLYT------------LGKLSGCSLQTIKEKVD 120 + + K + P ++T +Y+Y L KL + IK+K+ Sbjct: 70 SNKKEYKKLKKQCSYLDQIPNLIDT-DYVYEAILRSAKQKLTWLQKLICFEPKWIKDKIL 128 Query: 121 YWLARFQIEHLRFKKPNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLDPKTRNEFMDV 180 L + D S+GQK++V + + F PKLL++DEPT LDP T ++ MD+ Sbjct: 129 AILKEVNLNDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDL 188 Query: 181 CYELNVRNKMAVFVSSHILAELENYCDSLTVIHEGEILFNGKTKNIAKDNF 231 + R K+ + +H + Y + + ++ + T+ + K+ Sbjct: 189 ITDFVKREKITLVFVTHDIDLALKYSTRIIALKNHALVLDRLTEKLTKEQL 239 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 67.8 bits (164), Expect = 1e-013, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 12/206 (5%) Query: 24 ILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFKDEINIDG--ISNKNAK---- 77 ++++++F++ GE+ +G NG+GK+T K L + EI I G + N Sbjct: 23 LIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDNVSYLRN 82 Query: 78 SKGVISYIPEYAVFPKHLNTHEYLYTLGKLSGC-SLQTIKEKVDYWLARFQIEHLRFKKP 136 + G+I P+ T E G + C S Q IK +D + Q + ++P Sbjct: 83 NIGIIFQNPDNQFIGI---TVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQTDGFIKQEP 139 Query: 137 NDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLDPKTRNEFMDVCYELNVRNKMAVFVSS 196 ++ S GQK++V + L +P ++I DE TA LDPK + +L + K + + + Sbjct: 140 HNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGKCVISI-T 198 Query: 197 HILAELENYCDSLTVIHEGEILFNGK 222 H + E+ D + V++EG+++ GK Sbjct: 199 HDMEEVTK-ADKVLVMNEGKLIKQGK 223 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 66.6 bits (161), Expect = 3e-013, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 19/228 (8%) Query: 6 IVEVKHLEKEFGFWRKN--RILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFK 63 I+ V HL F N +++ D ++ + + IG +G+GK+T + + + Sbjct: 16 ILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQ 75 Query: 64 DEINIDGIS-----------NKNAKSKGVISYIPEYAVFPKHLNTHEYLYTLGKLS-GCS 111 +I + I K K+ ++ PEY +F +T E G ++ G S Sbjct: 76 GDIWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFK---DTVEKDIMFGPVALGQS 132 Query: 112 LQTIKEKVDYWLARFQIEHLRFKK-PNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLD 170 ++K Y+L +++ ++ P + S GQK++V + L +P++LI DEPTA LD Sbjct: 133 KYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLD 192 Query: 171 PKTRNEFMDVCYELNVRNKMAVFVSSHILAELENYCDSLTVIHEGEIL 218 P+ E M + + + VF+ +H + + D + V+ +G+++ Sbjct: 193 PEGEREMMQLIKTAK-QQQRTVFMITHQMENVLEVADVVLVLAKGKLV 239 >ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length = 564 Score = 64.7 bits (156), Expect = 1e-012, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 31/241 (12%) Query: 8 EVKHLEKEF--GFWRKNRILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFKDE 65 +++H+ K F G + N DV+ + H +G+NGAGK+T L Y+ + Sbjct: 7 KMEHISKSFDNGKIKANV---DVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGK 63 Query: 66 INI-----------DGISNKNAKSKGVISYIPEYAVFPKHLNTHEYLYTL-----GKLSG 109 I I D + +K I Y V + +E + K+S Sbjct: 64 IFIGEKQVNFKSSKDAVKHKIGMVHQHFKLIENYTVLDNIILGNESRFGFLPLINRKVSE 123 Query: 110 CSLQTIKEKVDYWLARFQIEHLRFKKPNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANL 169 ++TI EK ++ Q K ++ + GQ+++V +++ LF D +LI DEPTA L Sbjct: 124 AKIKTIMEKYGIFVDLKQ-------KVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVL 176 Query: 170 DPKTRNEFMDVCYELNVRNKMAVFVSSHILAELENYCDSLTVIHEGEIL--FNGKTKNIA 227 F+ + K V + SH L E++ D+ TV+ G+++ F+ KT + Sbjct: 177 SDLEIQNFLKIIANFKKLGKTIVLI-SHKLNEIKQVADTATVLRLGKVVGSFDVKTTPVD 235 Query: 228 K 228 K Sbjct: 236 K 236 >ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length = 848 Score = 61.6 bits (148), Expect = 9e-012, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 56/94 (59%) Query: 133 FKKPNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLDPKTRNEFMDVCYELNVRNKMAV 192 ++ P++FS GQ++++ + +AL PKL+I DE + LD + + +++ +L ++ + V Sbjct: 679 YRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTV 738 Query: 193 FVSSHILAELENYCDSLTVIHEGEILFNGKTKNI 226 +H L+ ++ C+ L ++H G+I+ G I Sbjct: 739 LFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEI 772 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 61.2 bits (147), Expect = 1e-011, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 30/214 (14%) Query: 24 ILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFKDEINIDGISNKNAK------ 77 IL DV+ I GE +G +G+GKTT + LI Y D I++ N Sbjct: 104 ILSDVSLQIAYGEIVIILGSSGSGKTTLLN-LIGGY----DSISLGSCIVANCPLEKCTS 158 Query: 78 ------SKGVISYIPEYAVFPKHLNTHEYLYTLGKL-----SGCSLQTIKEKVDYWLARF 126 K + Y+ + + L+ ++ + L ++ + EK+D Sbjct: 159 EQLLTYRKNNLGYVYQRYNLIELLSAYDNIAISQNLIPKYQRRLDIEELAEKLD------ 212 Query: 127 QIEHLRFKKPNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLDPKTRNEFMDVCYELNV 186 I+ + +K P + S GQK++V + +A+ +PKLL+ DEPT LD + +++ +N Sbjct: 213 -IKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINK 271 Query: 187 RNKMAVFVSSHILAELENYCDSLTVIHEGEILFN 220 K + + +H ++ L + + I +G+I+ N Sbjct: 272 TYKQTILMVTHDVS-LTRIANRIIKISDGKIVSN 304 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508074|ref|NP_110023.1| hypothetical protein MPN335 [Mycoplasma pneumoniae M129] (741 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508075|ref|NP_110024.1| bidomain: nucleotidyl transferase and conserved hypo-thetical second domain, probably phosphopantetheine adenylyltransferase activity [Mycoplasma pneumoniae M129] (344 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072906.1| hypothetical protein MG240 [Mycoplasma genitali... 340 1e-095 >ref|NP_072906.1| hypothetical protein MG240 [Mycoplasma genitalium G-37] Length = 292 Score = 340 bits (871), Expect = 1e-095, Method: Compositional matrix adjust. Identities = 158/292 (54%), Positives = 215/292 (73%), Gaps = 1/292 (0%) Query: 54 MLRVALKALPQMAVSNFDIKAQNGFSFNTVQHFKQRFPNAELYFLIGSDKLSELAKWHNI 113 ML++A+K++ VSNFDIK +N FS NTV HFK +P +E+YFLIGSDKL+EL KW +I Sbjct: 1 MLKLAIKSVNNALVSNFDIKTKNAFSINTVNHFKSCYPTSEIYFLIGSDKLNELEKWDHI 60 Query: 114 EQLQKLCRFVCYERFGYPIDEQLVQQFNVRLLGKCPLDLASSEMFGSHKFRQIPAKVLHY 173 +QL+ LC FVCYER YP ++++ QFNV+ L KCPL++ASS++ + + IP VL+Y Sbjct: 61 QQLKDLCTFVCYERKPYPFNKKIANQFNVKYLAKCPLEIASSKLLNQPRKKLIPLAVLNY 120 Query: 174 IHQHNIYLKTILQTLLDEPRMQHCLRVGQLAKTLAVANKLDGKTAYTAGAYHDLAKQLPQ 233 I+ +++YL L+ ++D+ R QHCLRVG+LAK LA+ANKLD K A+ AGAYHDLAKQLP Sbjct: 121 INTNHLYLIPTLKAMVDDKRFQHCLRVGKLAKQLAIANKLDAKRAFVAGAYHDLAKQLPV 180 Query: 234 AQLEKLAKVA-GVNDYPSWKVLHSYAGAYILKHWYGLNNSAVFSAIWNHTVPPQKMSQLD 292 QL +A + +YPSWKVLHSY GAYILK+W+G+ + + +AI NHT+PP+++S+LD Sbjct: 181 DQLVNIATSELKITNYPSWKVLHSYVGAYILKNWFGVKDKMIINAIKNHTIPPKQVSKLD 240 Query: 293 MIIYLADKLEPMRVHEEWAKGIDITXXXXXXXXXXXXXYQITLKYVRSLQKN 344 MI+YLADKLEP R E+W+ GI+I Y ITLKYV++L K+ Sbjct: 241 MIVYLADKLEPNRKQEQWSGGIEIDQLVKLAKSNLKQAYLITLKYVQNLVKD 292 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508076|ref|NP_110025.1| hypothetical protein MPN337 [Mycoplasma pneumoniae M129] (621 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072907.1| hypothetical protein MG241 [Mycoplasma genitali... 823 0.0 >ref|NP_072907.1| hypothetical protein MG241 [Mycoplasma genitalium G-37] Length = 620 Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/621 (65%), Positives = 490/621 (78%), Gaps = 2/621 (0%) Query: 1 MVKKELEMYNLYTFQIDLDKKLLFEKADNQQNYSKIRARYFKNSARNQQAVFLNKNLIKN 60 M++KE+E+YNL+TFQIDLDKKLLFEK+++Q+NYSKIR YFK+ +N+ AVFLNKNLIKN Sbjct: 1 MIQKEMEIYNLFTFQIDLDKKLLFEKSNDQKNYSKIRTHYFKHKFKNKSAVFLNKNLIKN 60 Query: 61 TFNKALLNFSDFLSGSGVESIFKQVIDDQPEVLNYLKQVKKEDSCDGHSEASQLVFNVVI 120 + NK LLNFSDF+SG+G++++F Q+ID+ PEVLNYLKQVKK+ S + ++ SQL FNV I Sbjct: 61 SLNKVLLNFSDFVSGAGIDTVFNQIIDEDPEVLNYLKQVKKDLSKENNA-TSQLTFNVTI 119 Query: 121 NPKNTLANFFEELTIYLHFNEENNTVVGSFSLKWNIKRADLFSETKNIAINNLIHTFCKN 180 NPKNTLANFFE IYLHFNEENNTV+GSFSL+W+IK+ DLFSETKNIAINNLIHTFCKN Sbjct: 120 NPKNTLANFFEGFNIYLHFNEENNTVIGSFSLQWHIKKTDLFSETKNIAINNLIHTFCKN 179 Query: 181 NLNEVSFIQIIKCFAKTLINKQGQIVLESCAFKQKWQNIVEQKYPFSTIHKNLKIVNSDF 240 N++E+SF+QII CF+KT INK G+IVL+SCAFKQKWQN+V +KYPFST K+L+ +N DF Sbjct: 180 NMHEISFMQIINCFSKTKINKHGEIVLKSCAFKQKWQNVVAEKYPFSTASKDLEKIN-DF 238 Query: 241 FDAFFVXXXXXXXXXXXXXXXXEKTEHFEWKLNSKISNFKEDNTEVYLSKMLLFLKDWYF 300 FDA FV EKT+ FEWK + K + FK +++ YL++MLLFL DWY Sbjct: 239 FDALFVMLLLVCHLNKNLLWLCEKTDFFEWKPSQKTALFKANDSGAYLARMLLFLNDWYN 298 Query: 301 ENQAVTNXXXXXXXXXXXXGKLVEKYSANQPQKLSSNSTVYVFEPDKKQCFLKNDDFFNT 360 ENQA+T GKLVEKYS NQPQKLS NSTVYV + +KQ FLKND FFN Sbjct: 299 ENQAITTADIENVNEVEDIGKLVEKYSTNQPQKLSLNSTVYVLQTKQKQFFLKNDFFFNN 358 Query: 361 NEAKLLFLITMQPNVFGLDDTAIANDLNLREIGDFFKEIDFTDSDVLNDFQQQKETLLVR 420 NEAKL FLITM+PNVFGLDDTAIAN+LNL++I DFFKEIDF D D+LNDF+Q++E LLVR Sbjct: 359 NEAKLFFLITMKPNVFGLDDTAIANNLNLKKISDFFKEIDFNDEDILNDFKQEQEKLLVR 418 Query: 421 RTFNQLLFMNSNTDVLSIVNNKFKSAIHNIVWTITYSKAIMLKAFDYSKIFEQNRTNDPX 480 RTFNQLLFMN NT++LS+VN+K KS IHNIVWTITYSKAIMLKAFDYSK FE+NRT+DP Sbjct: 419 RTFNQLLFMNKNTEILSVVNDKQKSVIHNIVWTITYSKAIMLKAFDYSKAFEKNRTSDPS 478 Query: 481 XXXXXXXXXXXXXXXXEYFRTASVKYDQLYTKVKEYMQLDQFLVDMINQVNHEDEIFGKY 540 EYF+ AS+KYD LYTK K+YMQ+D+F+ DMI +VNHEDEIFGK+ Sbjct: 479 LLRSNLTVINRLRYLSEYFQNASLKYDLLYTKAKQYMQIDKFINDMIRKVNHEDEIFGKF 538 Query: 541 KERVYLSLGIVTAVVFGIIEFFNCVWTVLTVSQQTAEKSLADPRNXXXXXXXXXXXXXXX 600 KER+YLSLGI++AVVFGI+EFFNCVWT+LTVSQ+ +KS+ DPRN Sbjct: 539 KERIYLSLGIISAVVFGIVEFFNCVWTILTVSQEVVDKSVLDPRNIIFISIGTILVLFLL 598 Query: 601 XXXXXFMTRRLYLFEFNKKHK 621 FMTRRLYLFE NKKHK Sbjct: 599 VTILVFMTRRLYLFEINKKHK 619 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508077|ref|NP_110026.1| hypothetical protein MPN338 [Mycoplasma pneumoniae M129] (632 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072908.1| hypothetical protein MG242 [Mycoplasma genitali... 898 0.0 >ref|NP_072908.1| hypothetical protein MG242 [Mycoplasma genitalium G-37] Length = 630 Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/632 (69%), Positives = 516/632 (81%), Gaps = 2/632 (0%) Query: 1 MEFNKLQLSHCISFYISDVSEVFFESINQHPSRDFVNNILQKIXXXXXXXXXXXXXXXXX 60 M+FNKL LSHCISFYIS+VSEVFFESINQHPSRDFVNNILQKI Sbjct: 1 MKFNKLNLSHCISFYISEVSEVFFESINQHPSRDFVNNILQKIKTTLSEEELEKLNSIEE 60 Query: 61 VTKDEKILIMLNHVLKKIVSKTGSSSCDLFQIVKHDRFNEPVYIQSVNAFENNLINNEFA 120 VTKDEKI+IMLNHVLKKIVSKTGSS CDLF ++K DRFN PVYIQS+NAFENNLINNEFA Sbjct: 61 VTKDEKIVIMLNHVLKKIVSKTGSSKCDLFNVIKQDRFNSPVYIQSINAFENNLINNEFA 120 Query: 121 ERRYDYLIEINKHSYLRKYVNAIRISFFLDLRAQILSGSFTLDVINKQLEHQNKEELFQA 180 ERRYDYLIE+NK+SYL+K+VN+IRISFFLDLRAQILSGSFTL+++NK +E Q K E+F+ Sbjct: 121 ERRYDYLIEVNKNSYLKKFVNSIRISFFLDLRAQILSGSFTLNLVNKSIEKQKKTEIFKD 180 Query: 181 IYLRSLIKHFISNQLYPISLNSFIFGDKNRENKTVENDKLSVLKNNWNQIFFSKYFDFVA 240 I++ +L+KHFI NQLYPISLNSFIF +N NK +++ +LK NWN +FF K+++ Sbjct: 181 IFVNALVKHFICNQLYPISLNSFIFDSENPSNKLALKERIKLLKTNWNSLFFDKFYN-CL 239 Query: 241 KNKEERVVDNNCDELFYATMNTXXXXXXXXXXXRVYFNSKEPALILKLLDNKVSLREDPD 300 NK ++ + DE+FYA +NT RVYF SKEPALILK+LD K +LREDPD Sbjct: 240 NNKNKQQLQETSDEMFYAVINTYLIMLISVEELRVYFTSKEPALILKVLDKKNTLREDPD 299 Query: 301 QNPETDLHELIKFAEKNYLEKEKTSRWHKKRVKSLEELLEEIKQINLETKNESLAYPDEI 360 QNPETDL+ELI+F E+NYL+K+K + W+KK+V+ LE+LLEEI +INLETKNESLAYPDEI Sbjct: 300 QNPETDLYELIQFIEQNYLKKDKKTSWNKKKVQDLEQLLEEINKINLETKNESLAYPDEI 359 Query: 361 VELELDNVHNFVSTKQVFRHQLDLQTLHGIVINPERYGIGMWSNHFVDWEEFKDLIEQIT 420 ELE+DN NFVSTKQVFR+QL+LQ LHGIVINPE+YGIGMWS++F DW E+K+LIEQ+ Sbjct: 360 TELEIDN-DNFVSTKQVFRNQLELQLLHGIVINPEKYGIGMWSSYFADWSEYKNLIEQML 418 Query: 421 DAENGSDLYGFEKDLDESICQVNKKYLTFIXXXXXXFLIIKNDQTKVISNYVWAQLYFET 480 + ++G+D Y FEKD+DESICQ+NKKYLTFI FLI+KND KVISNYVWAQL+FET Sbjct: 419 NPKSGNDFYQFEKDIDESICQINKKYLTFISSDSNTFLIVKNDDVKVISNYVWAQLFFET 478 Query: 481 RRWIINDIEYDLYEKGFDKSHFASNIALLESLNFNWLDPFYGLTSIKEIMQKIDSKSNLK 540 RRWIINDIE+DLYEKGFDKSHF+ NIALLESL+F+WLDPFYGLTSIKEIMQKIDSKSNLK Sbjct: 479 RRWIINDIEFDLYEKGFDKSHFSRNIALLESLSFSWLDPFYGLTSIKEIMQKIDSKSNLK 538 Query: 541 TSIAEMVAKFKHEQRISKKDNERVLMIFAYVAAAVVGFINFFSMVFTILTVSDLNAGLTP 600 TSI EMV +FKHEQRI+KKDNERVLMIFAY+AA VVGFINFFSMVFTILTVSDLNAGLT Sbjct: 539 TSIEEMVNRFKHEQRINKKDNERVLMIFAYIAAFVVGFINFFSMVFTILTVSDLNAGLTV 598 Query: 601 XXXXXXXXXXXXXXXXXXXXXXFRFRWKYIKH 632 FRF+WK+IKH Sbjct: 599 PNIIVISIASVLAFILIVIAVLFRFKWKHIKH 630 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508078|ref|NP_110027.1| hypothetical protein MPN339 [Mycoplasma pneumoniae M129] (224 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_077805.1| hypothetical protein MG243m [Mycoplasma genital... 173 1e-045 >ref|NP_077805.1| hypothetical protein MG243m [Mycoplasma genitalium G-37] Length = 226 Score = 173 bits (439), Expect = 1e-045, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MQVKVIDENSNTTAVLNCAKAKTRALAWLCDTVXXXXXXXXXYGISSIFIKEQSSVFLIM 60 MQ+KVI+E + T + CAK K RALAWLCD + I+ F + +FL++ Sbjct: 1 MQIKVINETNKTVQIFQCAKVKHRALAWLCDVFLLAIVLVVIFLITQAFSDNRFLLFLVL 60 Query: 61 TVSQAVLWLTYFVILPGLWKGKTLFRALLGLSLLIFKKRFWNLLVHELFLWVWYSVIFLA 120 + SQ +LW YF+ LP W GKTLFR LL + L F KRF +++HELFLW+ +SV+FL Sbjct: 61 SCSQTILWTVYFIFLPFFWDGKTLFRNLLKIKLFAFDKRFLRIMIHELFLWICFSVLFLV 120 Query: 121 LAIYFFVNRDDPKILQAFFDNQNSNLSWXXXXXXXXXXXXXXXXXXXYFCFSSQKQALQD 180 +A YFF+N++ + L F + N YFCFSS+KQALQ+ Sbjct: 121 IASYFFINQNSSEALNFFTNLDKPNAIAITIRTITILISFLQLIFIGYFCFSSEKQALQE 180 Query: 181 LLSKSFMVQKAIKVKDCKSELKSTNTIKTHSDLPGDIDLEQL 222 +LS +FMVQ+ +K + LK TN ++LPG I L+++ Sbjct: 181 ILSNTFMVQEKHTLKSKPTSLK-TNNQPDPANLPGVIALDEV 221 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508079|ref|NP_110028.1| DNA helicase II [Mycoplasma pneumoniae M129] (529 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072909.1| DNA helicase II, putative [Mycoplasma genitaliu... 315 9e-088 >ref|NP_072909.1| DNA helicase II, putative [Mycoplasma genitalium G-37] Length = 703 Score = 315 bits (806), Expect = 9e-088, Method: Compositional matrix adjust. Identities = 169/390 (43%), Positives = 244/390 (62%), Gaps = 18/390 (4%) Query: 4 LNQEQKAAVTCDNGVNVVYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDKAASE 63 +N++QK A++C GVNVVYSGAGTGKTT+I RFAYLVN++ V+P ILA TFT KAA E Sbjct: 1 MNEQQKQAISCGKGVNVVYSGAGTGKTTIITNRFAYLVNKEKVDPSRILAITFTKKAAKE 60 Query: 64 MRQRIIKLIPQKSLQDLHIYTFHSFANRFLQKHGKSDFAILSDSNRFFSDYEMGDQL--- 120 M+ RI+KLI + +IYTFHSF N+FL + K F I D + F ++ +L Sbjct: 61 MQFRILKLIDSSLAEKTNIYTFHSFCNKFLIQTLKKRFIIDDDISYFLKEFLADSKLDIN 120 Query: 121 --QTVVEIYKNKVVDLELDNLEYNSAFRDACTDTF---NEDFSTISNGQFRKRAATALRA 175 + +++ +KN D E++ L+ + C + +E++ST+ + + A + Sbjct: 121 LAKQIIDNFKNTFADFEINKLDQDERLISLCEHSLLNKDEEYSTL-----KTQLINAFIS 175 Query: 176 YQNYLITNNLFDFSDLIIETCHLLKGNSELLQAFTESVHYILVDEFQDTNLAQYELVKLL 235 Y+ I NN DF DL+I+TC+LL +++LL ++E +ILVDEFQDTN QYEL+K+L Sbjct: 176 YEKNKILNNKLDFHDLLIKTCNLLSNDNDLLNQWSEQFQHILVDEFQDTNQIQYELIKML 235 Query: 236 ATTHPNLFLVGDSNQMIYGWRGAVVEIFELLKNDFQAVK--EFYTTQNYRSIQAVLAVAN 293 T + NLFLVGD+NQMIY WRGAV I LK+DF K EF+ QNYR Q +LAVAN Sbjct: 236 VTKNKNLFLVGDNNQMIYRWRGAVNGIITALKHDFNVPKSNEFFINQNYRCDQNILAVAN 295 Query: 294 DVLTAIARKERKALV---LLHSSIDSKAVPVHYKANSLKNQDQWIIYQMKQLHLNNGVPY 350 +L I E++ LL S+++S PV+++A S++NQ WI ++K L+ + + Sbjct: 296 QILLKIMAYEKQVKTEKNLLFSTLNSDKKPVYFQAESVENQANWIFNKIKALNQTEKINF 355 Query: 351 DQMAVLFRKNKHLDAFSQTVLEDGDLPLAK 380 MA+LFRKN+ + + + DG +PL K Sbjct: 356 KDMAILFRKNRDITTMVELIEADGTIPLPK 385 Score = 90.5 bits (223), Expect = 3e-020, Method: Compositional matrix adjust. Identities = 51/99 (51%), Positives = 69/99 (69%), Gaps = 3/99 (3%) Query: 381 LNLLTIHAAKGLEFEAVFVYGLVERAFPS-LHWDGSDKHKLLEEMKLFYVAITRAKQFLF 439 +NLLT+HAAKGLEFEAVF+YG+ + FP L + +D+ L++E+KLFYVAITRAK+FLF Sbjct: 532 INLLTVHAAKGLEFEAVFIYGMNQGDFPLFLSQNQNDEQHLIDELKLFYVAITRAKRFLF 591 Query: 440 LVSVSVESFNAYYEPSRFLKLIEK-EHLQTQKAAYFKEQ 477 + +V ++ N +PS FL I K E+L Y EQ Sbjct: 592 ITAV-LQINNNSIKPSSFLNYINKSEYLDIATINYVLEQ 629 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508080|ref|NP_110029.1| DNA helicase II (with Mycoplasma specific C-terminal domain) [Mycoplasma pneumoniae M129] (715 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072909.1| DNA helicase II, putative [Mycoplasma genitaliu... 723 0.0 >ref|NP_072909.1| DNA helicase II, putative [Mycoplasma genitalium G-37] Length = 703 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/708 (51%), Positives = 495/708 (69%), Gaps = 6/708 (0%) Query: 9 LNKEQRAAVTCGKGVNIVYSGAGTGKTTIISQRFAYLFNQKRINPSNILALTYTRKAASE 68 +N++Q+ A++CGKGVN+VYSGAGTGKTTII+ RFAYL N+++++PS ILA+T+T+KAA E Sbjct: 1 MNEQQKQAISCGKGVNVVYSGAGTGKTTIITNRFAYLVNKEKVDPSRILAITFTKKAAKE 60 Query: 69 MKQRILELLPEKYHKDVNIYTFHSFCSRFLREEGQKNFVIDDDLSNFLKDFLKESELKSQ 128 M+ RIL+L+ + NIYTFHSFC++FL + +K F+IDDD+S FLK+FL +S+L Sbjct: 61 MQFRILKLIDSSLAEKTNIYTFHSFCNKFLIQTLKKRFIIDDDISYFLKEFLADSKLDIN 120 Query: 129 KVLQIIDGFKNAYFDFDTNSLKDDERLVELCEFHLDPQERNFQLFKETAIAAFVEYEKGK 188 QIID FKN + DF+ N L DERL+ LCE L ++ + K I AF+ YEK K Sbjct: 121 LAKQIIDNFKNTFADFEINKLDQDERLISLCEHSLLNKDEEYSTLKTQLINAFISYEKNK 180 Query: 189 QQNNKIDFADLLIKTCTLLSKDHKLLRKWSKKFQYILGDEFQDTNQIQYELIKMLASHHQ 248 NNK+DF DLLIKTC LLS D+ LL +WS++FQ+IL DEFQDTNQIQYELIKML + ++ Sbjct: 181 ILNNKLDFHDLLIKTCNLLSNDNDLLNQWSEQFQHILVDEFQDTNQIQYELIKMLVTKNK 240 Query: 249 NLFLVGDNNQMIYRWRGAVSDIIDSLKSDFKVRPENEFYITQNYRCDQNILTVANSILGT 308 NLFLVGDNNQMIYRWRGAV+ II +LK DF V NEF+I QNYRCDQNIL VAN IL Sbjct: 241 NLFLVGDNNQMIYRWRGAVNGIITALKHDFNVPKSNEFFINQNYRCDQNILAVANQILLK 300 Query: 309 IYAKENQPDSTKGFLFSAIKSNRLPVYFQASSVEGQHSWIINKIKNLHKNHGIQYKDMAI 368 I A E Q + K LFS + S++ PVYFQA SVE Q +WI NKIK L++ I +KDMAI Sbjct: 301 IMAYEKQVKTEKNLLFSTLNSDKKPVYFQAESVENQANWIFNKIKALNQTEKINFKDMAI 360 Query: 369 LFRTNRNMDSMTEALEADGSIPLKQNKGFFKQLETFKKVLVALITRSNYDIKLALKSLRV 428 LFR NR++ +M E +EADG+IPL + K +F QL ++VL+A+ TR+N DIK AL++L++ Sbjct: 361 LFRKNRDITTMVELIEADGTIPLPKQKSYFNQLVKLQRVLIAISTRTNLDIKRALQALKI 420 Query: 429 WPNVLNKSLTVNEQVNLDKILQNLEQAIFLDEHTRGELTEAAKVFTRLIKFVEEQQFEAL 488 W N L + +++ NL L+ E L++ +A F LIK E+QQ L Sbjct: 421 WSNDLKELWKQSDKTNLFDFLKWSE----LNQKNHSSKLKATGYFNLLIKLAEDQQINLL 476 Query: 489 LAFTFEALNTDQFVCNFIFRTLQKLQTENKNFTITDFINELRFQQDELKQSKDNVINLIT 548 F+ L DQ + N +++ L + Q + F++++FI L + D + ++ + INL+T Sbjct: 477 FTELFKKLKVDQTIENLLWKKLTEFQKDKTEFSLSEFITSLALEFDSIIENSSDTINLLT 536 Query: 549 VHSAKGLEFEAVFIYGINQDNFPL-KSKNQIIDLQRELDELRLFYVALTRAKKYLFLLSV 607 VH+AKGLEFEAVFIYG+NQ +FPL S+NQ D Q +DEL+LFYVA+TRAK++LF+ +V Sbjct: 537 VHAAKGLEFEAVFIYGMNQGDFPLFLSQNQ-NDEQHLIDELKLFYVAITRAKRFLFITAV 595 Query: 608 YQMSGEIIYPSKFIRFINKEDRLEIATINHKVHQDDEFFDSSKTEDYQKKYLTENTDFVN 667 Q++ I PS F+ +INK + L+IATIN+ + QDD+FFDS+K DY KK E+ D + Sbjct: 596 LQINNNSIKPSSFLNYINKSEYLDIATINYVLEQDDDFFDSTKKTDYTKKLRKESLDIIV 655 Query: 668 GDSVSHRTYGKGXXXXXXXXXXXXXFKNSKYGQRWIVKNHRDLVKAVY 715 GD V+ R +GKG FK+++YG +WI+KNH+ L KA+Y Sbjct: 656 GDLVTSRYFGKGVVVEVRDKEVLVAFKDTRYGMKWILKNHKSLTKALY 703 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508081|ref|NP_110030.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129] (543 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508082|ref|NP_110031.1| hypothetical protein MPN343 [Mycoplasma pneumoniae M129] (330 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508083|ref|NP_110032.1| hypothetical protein MPN344 [Mycoplasma pneumoniae M129] (216 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508084|ref|NP_110033.1| Type I Restriction Enzyme (fragment) [Mycoplasma pneumoniae M129] (206 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508085|ref|NP_110034.1| Type I Restriction Enzyme hsdR (fragment) [Mycoplasma pneumoniae M129] (115 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508086|ref|NP_110035.1| Type I Restriction Enzyme (fragment) [Mycoplasma pneumoniae M129] (376 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508087|ref|NP_110036.1| 5-formyl tetrahydrofolate cyclo-ligase (HI0858) homolog [Mycoplasma pneumoniae M129] (164 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072910.1| hypothetical protein MG245 [Mycoplasma genitali... 205 2e-055 >ref|NP_072910.1| hypothetical protein MG245 [Mycoplasma genitalium G-37] Length = 165 Score = 205 bits (521), Expect = 2e-055, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 121/161 (75%) Query: 1 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIKNEVTFVD 60 +DKN+LRK +L KR L+ +EKSHLDQKINQKL+AFL +P IK +ALY PIKNEV F+D Sbjct: 2 VDKNSLRKLMLLKRAELNDLEKSHLDQKINQKLMAFLITRPTIKNLALYIPIKNEVAFLD 61 Query: 61 FFFEFLKINQIRAVYPKVISDTEIIFIDQETNTFEPNQIDCFLIPLVGFNKDNYRLGFGK 120 F +FLK+N+I + +P ++ + FIDQ N PN IDCF IPL+ FNK N+R+GFGK Sbjct: 62 NFLDFLKLNKITSCFPSIVDQFNMKFIDQNNNEINPNDIDCFFIPLLAFNKANHRIGFGK 121 Query: 121 GYYDRYLMQLTRQQPKIGIAYSFQKGDFLADPWDVQLDLII 161 GYYDRYL +++Q KIGIAY FQ +F DPWD QLDLII Sbjct: 122 GYYDRYLSLTSKKQLKIGIAYDFQYAEFTNDPWDYQLDLII 162 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508088|ref|NP_110037.1| hypothetical protein MPN349 [Mycoplasma pneumoniae M129] (281 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072911.1| hypothetical protein MG246 [Mycoplasma genitali... 423 e-120 >ref|NP_072911.1| hypothetical protein MG246 [Mycoplasma genitalium G-37] Length = 281 Score = 423 bits (1087), Expect = e-120, Method: Compositional matrix adjust. Identities = 198/280 (70%), Positives = 230/280 (82%) Query: 2 MNSIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKE 61 M++IK +FLGDVYGKAGR II ++L +K KYQ +L+I NAENTT+GKGLS HY+ LK+ Sbjct: 1 MDNIKVLFLGDVYGKAGRKIISDHLPIIKKKYQLNLIIANAENTTNGKGLSWNHYQILKQ 60 Query: 62 AGVNYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRIT 121 AG++YITMGNHTWFQK DL +V+N+ D++RPLNL F + LG+GS +F N KIRIT Sbjct: 61 AGIDYITMGNHTWFQKQDLELVLNQVDVIRPLNLMQDFNYFQLGKGSYLFSLNGLKIRIT 120 Query: 122 NLLGTSVPLPFKTTNPFKVLKELILKRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIFG 181 NLLGTS+ LPF TNPF LK+L+L +DCDLHIVDFHAETTSEKNAFCM FDGYVT I G Sbjct: 121 NLLGTSINLPFAITNPFVELKKLVLTKDCDLHIVDFHAETTSEKNAFCMVFDGYVTAILG 180 Query: 182 THTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSREHFEVSKCGA 241 THTHVPS DLRITPKGS YITDVGMCGPGFGSVIGANP+QSI+LFC G R+ FEVS CGA Sbjct: 181 THTHVPSNDLRITPKGSVYITDVGMCGPGFGSVIGANPKQSIKLFCTGERQFFEVSNCGA 240 Query: 242 QLNGVFFEVDVNTKKVIKTEAIRIVEDDPRYLKQDYFNLI 281 QLNGVFFEV T +V+K E IRIV DD +YL DYFNL+ Sbjct: 241 QLNGVFFEVCSKTNQVVKIEQIRIVLDDEKYLANDYFNLV 280 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508089|ref|NP_110038.1| hypothetical protein MPN350 [Mycoplasma pneumoniae M129] (239 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072912.1| hypothetical protein MG247 [Mycoplasma genitali... 365 e-103 >ref|NP_072912.1| hypothetical protein MG247 [Mycoplasma genitalium G-37] Length = 239 Score = 365 bits (938), Expect = e-103, Method: Compositional matrix adjust. Identities = 172/239 (71%), Positives = 210/239 (87%) Query: 1 MNAASAIALLIVFSLVIGYLMGSVMFADVFGKILNKDVRKLGSKNPGATNSIRVFGLKIG 60 MN ASAIA+L++FSL GYL+GS++FAD+F KIL K+VR+ GSKNPGATNS+RVFGLKIG Sbjct: 1 MNQASAIAILVIFSLASGYLLGSIIFADIFSKILKKNVREFGSKNPGATNSMRVFGLKIG 60 Query: 61 FLVGLCDALKGFLAFVFSFLIFSFWLQQYLNVNQYQKVYYLTYLSCFAATIGHIFPLYFK 120 FLV + DA KGF AF+ ++++F F LQ YL YQ Y+L+YLSCFAATIGHIFPLYFK Sbjct: 61 FLVAIFDAFKGFFAFLLTWILFRFGLQGYLTEKVYQSTYFLSYLSCFAATIGHIFPLYFK 120 Query: 121 FKGGKAIATTGGSLLAISLWWFVICLVLWLLVTLITKYVSLASLVTFFILAIIILVPWLD 180 FKGGKAIATTGGSLLAISLWWF+ICL++W+++TLITKYVSLASL+TFF+LA+IIL+PWLD Sbjct: 121 FKGGKAIATTGGSLLAISLWWFLICLLIWIMITLITKYVSLASLITFFVLAVIILIPWLD 180 Query: 181 YLYFFKPNPINAISYQNDWYIILFFVLWYWPLTIAVFWLHRKNIHRLLNKTENKVTQLN 239 YLYFF +P+ +I+YQN+WYIILFF LWYWPLT+ VFWLHR NI R+L+ E+K+TQLN Sbjct: 181 YLYFFNSDPLKSITYQNEWYIILFFCLWYWPLTVVVFWLHRANIIRILHGKESKITQLN 239 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508090|ref|NP_110039.1| methyltransferase [Mycoplasma pneumoniae M129] (213 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072913.1| hypothetical protein MG248 [Mycoplasma genitali... 227 8e-062 >ref|NP_072913.1| hypothetical protein MG248 [Mycoplasma genitalium G-37] Length = 218 Score = 227 bits (578), Expect = 8e-062, Method: Compositional matrix adjust. Identities = 113/213 (53%), Positives = 146/213 (68%), Gaps = 1/213 (0%) Query: 1 MKRRISTIANLVLQQKPKAFYDIGCDHGYLARELVQQNPSLVGVNSDISANXXXXXXXXX 60 MK+RISTIANLV PK YDIGCDH YL L++ N +L VNSDIS N Sbjct: 1 MKKRISTIANLVQSFNPKLVYDIGCDHSYLTSYLIKTNQNLTIVNSDISKNALLSNYQKF 60 Query: 61 XDHTNMHFITSDGFDLLPNLNLDPAVGVIAGLGGLKIMQILAQHNNFLKHFVLQPQSNII 120 ++ N+HF SDGF+ LP LN++P +GVIAGLGGLKI+ I++Q NF+ FV+QPQSN+I Sbjct: 61 KNNNNIHFFVSDGFNNLPELNINPKIGVIAGLGGLKIINIISQKENFINRFVIQPQSNLI 120 Query: 121 ELRRFLSANQWTITTETLVEERGFIYLVLAVDKTKAQTQYLTEEQMILGPHLVNFTDKQM 180 ELR FLS N W I ETLV++R FIY +L ++K K + LT+E +ILGP L+NF DK Sbjct: 121 ELRSFLSLNSWDIVNETLVQDREFIYPILVIEKLKKPFK-LTKELVILGPKLINFKDKHC 179 Query: 181 LVKYYNGLLKNFTARLNPSQFDSQVIHVLNKII 213 L+K+Y LL+ + + PS D ++I LNKII Sbjct: 180 LMKHYQCLLRVYQPKQKPSLMDLKIIETLNKII 212 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508091|ref|NP_110040.1| Sigma-70 Factor Family [Mycoplasma pneumoniae M129] (499 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072914.1| RNA polymerase sigma-43 factor (rpoD) [Mycoplas... 842 0.0 >ref|NP_072914.1| RNA polymerase sigma-43 factor (rpoD) [Mycoplasma genitalium G-37] Length = 497 Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/500 (85%), Positives = 446/500 (89%), Gaps = 4/500 (0%) Query: 1 MSSPKKNFKKPQPKTENQKQALNEERIAELKKSRILGKNRPFKKMIYVDTKAQRKQKHEN 60 MS+ KK + K + K L+EE IAELKK RIL KNRP+KKMIYVD K QRK +HEN Sbjct: 1 MSTDKKTLGE---KPNSTKPELSEELIAELKKQRILEKNRPYKKMIYVDNKVQRKHRHEN 57 Query: 61 VAFLKTLQENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILEGSLKSHTENDDTNKVISL 120 +AFLKTL ENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILEGSLKSH ENDDTN VI+L Sbjct: 58 IAFLKTLHENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILEGSLKSHIENDDTNTVINL 117 Query: 121 LVEVWEXXXXXXXXX-XXXXXXIVNVLSKFELPDDEIIFVLDELRDKGIELPHDVEEHIH 179 L E WE I++VL+KFELP+DEII+VLDELRDKGI+L HDVEEHIH Sbjct: 118 LTEAWEKKSKKKQKNITLSNKEIISVLAKFELPEDEIIYVLDELRDKGIQLQHDVEEHIH 177 Query: 180 EFRANQDLSIIDEDIEELTTKNISNRDKVDDNVRFFLGSLDSSKMLDFESEQRIAKVLNS 239 EFRANQDLSIIDEDIEELT+KNISNRDKVDDNVRFFLGSLD SKMLDFESEQRIAKVLNS Sbjct: 178 EFRANQDLSIIDEDIEELTSKNISNRDKVDDNVRFFLGSLDFSKMLDFESEQRIAKVLNS 237 Query: 240 TDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNK 299 TDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNK Sbjct: 238 TDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNK 297 Query: 300 FSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREPTAEELAEK 359 FSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERAL QELGREPT EELAEK Sbjct: 298 FSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALYQELGREPTDEELAEK 357 Query: 360 MGGQAEGFTVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVRDTDAQMPDEFTESRSNY 419 MGGQAEGF VKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFV+DTDAQ PDEFTESRSN Sbjct: 358 MGGQAEGFNVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVKDTDAQTPDEFTESRSNS 417 Query: 420 EKIDELLNNCLSEQEELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQIETKAIRKLR 479 EKIDELLNN LSEQEELIVRMRIGMPPYNE KTLDEV QKI IPREKIRQIE KAIRKLR Sbjct: 418 EKIDELLNNNLSEQEELIVRMRIGMPPYNEPKTLDEVGQKILIPREKIRQIENKAIRKLR 477 Query: 480 QAVRNNHMSLSFMRGNEKKD 499 AVRNN +S+SF+R NEKKD Sbjct: 478 HAVRNNPISMSFLRINEKKD 497 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508092|ref|NP_110041.1| DNA primase [Mycoplasma pneumoniae M129] (620 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072915.1| DNA primase (dnaE) [Mycoplasma genitalium G-37] 546 e-157 ref|NP_072670.1| hypothetical protein MG010 [Mycoplasma genitali... 65 2e-012 >ref|NP_072915.1| DNA primase (dnaE) [Mycoplasma genitalium G-37] Length = 607 Score = 546 bits (1406), Expect = e-157, Method: Compositional matrix adjust. Identities = 282/623 (45%), Positives = 405/623 (65%), Gaps = 28/623 (4%) Query: 1 MTSPTSLDQLKQQIKIAPIVEHYAIKLKKKGKDFVALCPFHADQNPSMTVSVAKNIFKCF 60 + SLD+L +QIKI I++HY +K++ KG +ALCPFH D+NPSM++S +KNIFKC+ Sbjct: 2 VNKSNSLDELLKQIKITEIIQHYGVKIQTKGNSLLALCPFHDDKNPSMSISSSKNIFKCW 61 Query: 61 SCQVGGDGIAFIQKIDQVDWKTALNKALSILNLDSQYAVNFYLKEVDPKLKRYWDLHSAL 120 +C G+GIAFIQK DQ+DWKTAL KA+ I + + + L +VDPK KRYW++++AL Sbjct: 62 ACNAAGNGIAFIQKHDQLDWKTALKKAIEICGIKLENWNSNLLTKVDPKQKRYWEINNAL 121 Query: 121 VDYYQTRLKLEPKEQGLTYLTETRKLSPQVIERFQLGLAFTLEDQYFLPSLLNYPWISPA 180 + YYQTRLK E G+ YL E RKL+ +IE+FQLGLAF ED+Y S+ YP+I+P Sbjct: 122 ITYYQTRLKRETNPNGMNYLVEKRKLNKTLIEQFQLGLAFHNEDKYLCESMERYPFINPK 181 Query: 181 IEKAELCFATEKFPEALGFFNQQTHYATFKSRIMIPIHDLKGNPVGFSGRALQKTEKIKY 240 I+ +EL ++ + LGFF+ T ATF+++IMIPIHD GNPVGFS R++ K+KY Sbjct: 182 IKPSELYLFSKTNQQGLGFFDFNTKKATFQNQIMIPIHDFNGNPVGFSARSVDNINKLKY 241 Query: 241 KNSAEHQWFKKSELLFNFHRIDKNTLKLYLVEGYFDVFALTSAGIGDVVGLMGLALSESH 300 KNSA+H++FKK ELLFNFHR++KN +L++VEGYFDVF LT++ + V LMGLAL++ Sbjct: 242 KNSADHEFFKKGELLFNFHRLNKNLNQLFIVEGYFDVFTLTNSKF-EAVALMGLALNDVQ 300 Query: 301 IIAFQQQLKALETVVLALDNDTAGHDATFKLLQELNAHGIIVEVVDWNQAAYKDWDELFL 360 I A + K L+T+VLALDND +G +A F L+++LN + IVE+V W + YKDWDEL+L Sbjct: 301 IKAIKAHFKELQTLVLALDNDASGQNAVFSLIEKLNNNNFIVEIVQW-EHNYKDWDELYL 359 Query: 361 AEGSDAVKAKTHRVLNLVEYLVAYFKTKGFDERITVNKVIDIIAQNQKVTADTSFSRFLC 420 +GS+ V + ++ NL+EYLV++FK + D+R+ NK+I + +NQ + D SF FL Sbjct: 360 NKGSEQVILQANKRQNLIEYLVSFFKKQQLDQRVITNKIIAFLTKNQTILNDHSFLIFLI 419 Query: 421 QKLQQLLQYSDVEXXXXXXXXXXXXXXXXXXXXXXXRAPIYESVVGVVDNS--FRNES-- 476 + L +LL+YSD + E +V DN+ + N S Sbjct: 420 KNLVKLLEYSDEKTLYETVLKHK------------------EKLVSKFDNNRFYINTSGH 461 Query: 477 ----QPVAITKEFLVENNWKETKERVFHAEIFAYVLLDKQFLVELKQSDLDELFASLQTP 532 Q + T LV+ ++E ++ EIFA+ L+DK+FLVELKQS LDE+F Sbjct: 462 AQPPQELQKTTAALVQTAFEEAVNELWKPEIFAFALIDKRFLVELKQSHLDEVFKECNFN 521 Query: 533 LFDVALFIDKARLYWAKVQEPDWAVFNSILGEQQAMFPTTFLAQIKEFFLNKSLSYDPED 592 LFDV LFI+KAR+YW++ Q +W F S+L + + L +IK+ FL++ Y D Sbjct: 522 LFDVELFIEKARIYWSENQTANWVGFESVLDQNYLLNNKARLLEIKDIFLDELTCYQAND 581 Query: 593 YEEDLQFFRQLIVKQKELLKYFK 615 ++ L+ F+ L+ +QK+ LK K Sbjct: 582 FQNYLKTFQTLLKQQKQRLKNLK 604 >ref|NP_072670.1| hypothetical protein MG010 [Mycoplasma genitalium G-37] Length = 218 Score = 65.1 bits (157), Expect = 2e-012, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 13/174 (7%) Query: 206 YATFKSRIMIPIHDLKGNPVGFSGRALQKTEKIKYKNSAEHQWFKK----SELLFNFHRI 261 Y K + +P++ GN +GF R K+ YK + F K SE + Sbjct: 53 YLQNKEWLNLPLYSFDGNLIGFLNR------KVSYKKEFLYTPFNKPPSKSEAFVGLREL 106 Query: 262 DKNTLKLYLVEGYFDVFALTSAGIGDVVGLMGLALSESHIIAFQQQLKALETVVLALDND 321 +YLVEG FD A AGI + + L GL +S + +Q+ ++ + + DND Sbjct: 107 VIKDNSIYLVEGDFDWLAFRKAGILNSLPLCGLTISNQQVQWLKQK--KIKKIFICFDND 164 Query: 322 TAGHDATFKLLQELNAHGIIVEVVDWNQAAYKDWDELFLAEGSDAVKAKTHRVL 375 AG + L + L G I +V++ +AA KDW++LFL S+ T+++L Sbjct: 165 LAGKNGAKNLKEYLTKQGFITKVIEI-KAAAKDWNDLFLLNNSNWSAVLTNQLL 217 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508093|ref|NP_110042.1| glycyl-tRNA synthetase [Mycoplasma pneumoniae M129] (449 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072916.1| glycyl-tRNA synthetase [Mycoplasma genitalium G... 660 0.0 >ref|NP_072916.1| glycyl-tRNA synthetase [Mycoplasma genitalium G-37] Length = 446 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/444 (70%), Positives = 373/444 (84%) Query: 1 MAQVYSQEVYVQYLKRYGFVFQSSELYNGLANSWDFGPLGAVLKQQIKTALYNFFIKNKR 60 MA+VY+QEVYVQ+LK++GFVFQSSE+YNGL NSWDFGPLGAVLKQQIK ALYNFFIKNK Sbjct: 1 MAKVYNQEVYVQFLKQHGFVFQSSEIYNGLNNSWDFGPLGAVLKQQIKQALYNFFIKNKA 60 Query: 61 DVLLIDTPIILNEQIWKASGHLANFTDALVDCKSCKLRFRVDHLDEQIKSATQWNPKQVN 120 DVLL++TPIIL+E +WKASGHLANF D LVDCKSCK RFRVD ++ +IK+ WN +VN Sbjct: 61 DVLLVETPIILSELVWKASGHLANFVDTLVDCKSCKYRFRVDQINAEIKAKKDWNSFKVN 120 Query: 121 CPNCKANNWSEVRDFNLLFQTEIGVVNSEKRLVYLRPETAQGIFINFXXXXXXXXRPLPF 180 CPNC NWSEVRDFNLLFQTEIGVVN++KRLV+LRPETAQG FINF R LPF Sbjct: 121 CPNCHNQNWSEVRDFNLLFQTEIGVVNNDKRLVFLRPETAQGSFINFKNILQAKKRNLPF 180 Query: 181 GVAQFGKSFRNEVTPGNFLFRVREFEQFEMEWFCNPQASLSVFESQQQAIAHFLFKVLQL 240 +AQFGKSFRNE+TPGNFLFR REFEQFE+EWFC P + S+FE Q + FL VL++ Sbjct: 181 AIAQFGKSFRNEITPGNFLFRTREFEQFEIEWFCKPDDANSLFEKQLIMVEQFLQTVLKI 240 Query: 241 NPALVKQYEYDKNELAHYANKTVDFLFQFPHGLRELWGLADRGTFDLEQHQKYAKKPLDF 300 NP L+K++EYD++ELAHYA KT DFLF FPHGL+ELWGLA+RG FDL+QHQ+++KK + F Sbjct: 241 NPELLKKHEYDQSELAHYAKKTTDFLFNFPHGLKELWGLANRGDFDLKQHQEFSKKSMSF 300 Query: 301 FDGENNEHFIPAVVEPSVGIERLFYALIVSSYQQEQLEGEMREVLRLPFHLCPEQIVVLP 360 FD E N+HF+P ++EP+VGIERLFYALIVSSY++E + E REVL LPF LCPEQI+VLP Sbjct: 301 FDSELNQHFLPFIIEPAVGIERLFYALIVSSYRREIINEEEREVLSLPFDLCPEQIIVLP 360 Query: 361 LVNKLKETAQTLFEALSQTHWRIGFESAGSIGKRYRKADAIGTKFAITFDFESLEDQAVT 420 LVNKLK+ A ++FE L++T WR+ FE+ GSIGKRYRKADAIG K+A+TFDFESLED AVT Sbjct: 361 LVNKLKKEAFSVFETLAKTRWRVCFETTGSIGKRYRKADAIGIKYAVTFDFESLEDNAVT 420 Query: 421 IRERDSLKQVRVPIKELKAWFAQH 444 IR+RD+L Q R+ IKEL WF ++ Sbjct: 421 IRDRDTLVQQRIAIKELPQWFMKN 444 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129] (242 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072917.1| rRNA methylase, putative [Mycoplasma genitalium... 293 1e-081 >ref|NP_072917.1| rRNA methylase, putative [Mycoplasma genitalium G-37] Length = 242 Score = 293 bits (750), Expect = 1e-081, Method: Compositional matrix adjust. Identities = 139/242 (57%), Positives = 183/242 (75%) Query: 1 MKRMQETSFLFGSKAFLEALDNQLQIKKVNLSDKHQXXXXXXXXXXXXYEMHSSQWFHQQ 60 MK+ ++ S LFG KAF EA++NQ+ IK VN+S +H+ +++HS+ WF+ Q Sbjct: 1 MKKPRQQSCLFGVKAFEEAINNQVHIKLVNISIRHKKLIPLIEAKKINFQIHSTNWFNNQ 60 Query: 61 FRHINHQEFVCVINPNQMLKTIEQLIQITDSKSTSTLVMLHEIQDPHNFGAILRTCMAAE 120 +R INHQE V V++ NQ+L ++QL+++ ++K STLVML EIQDP+NFGAILRTC+A+E Sbjct: 61 YRDINHQELVAVLDTNQLLIPLDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASE 120 Query: 121 VDGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERL 180 VDGIIFKK+NQ PIN+TV++TSMG+VFYQNLVQV NLSY IT L++ GFWTV +TLD Sbjct: 121 VDGIIFKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVSTLDPIW 180 Query: 181 KPKDYRQVDFDKRILLVGNEXXXXXXXXXXXXXXKVKIPMNPKLNSLNVSVAVGIILFGW 240 KP DYR+VDF K+IL+VGNE ++KIPMN K+NSLNVSVA+GIILF W Sbjct: 181 KPIDYRKVDFAKKILIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAW 240 Query: 241 KS 242 K+ Sbjct: 241 KN 242 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508095|ref|NP_110044.1| cysteinyl-tRNA synthetase [Mycoplasma pneumoniae M129] (437 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072918.1| cysteinyl-tRNA synthetase (cysS) [Mycoplasma ge... 594 e-172 >ref|NP_072918.1| cysteinyl-tRNA synthetase (cysS) [Mycoplasma genitalium G-37] Length = 428 Score = 594 bits (1532), Expect = e-172, Method: Compositional matrix adjust. Identities = 282/428 (65%), Positives = 339/428 (79%), Gaps = 1/428 (0%) Query: 10 LIDTVSNQSVVLEQKQINIYLCGPTVYNDLHLGNTRPLIVFDVLQRVLQAAQYKVQFVQN 69 ++D+VS + L QK INIYLCGPTVYNDLHLGNTRPLIVFDVL RVL+ A+Y V FVQN Sbjct: 2 IVDSVSQKPTTLVQKTINIYLCGPTVYNDLHLGNTRPLIVFDVLNRVLKKAKYTVNFVQN 61 Query: 70 ITDXXXXXXXXXXXXXXXXXXLCKQQITAYKSLLKKLNILPIKHLQVTDKIDKMPGYIAR 129 ITD + KQQITAYKSLLKKLNILPIKH+Q+T+KIDK+P YI + Sbjct: 62 ITDIDDKIIKIAQQQEVSESVVTKQQITAYKSLLKKLNILPIKHIQITEKIDKIPDYIDQ 121 Query: 130 LVKKGFAYVSPLGNTYFSVSQLPQYGILANRVVETIEDEATDKRNKLDFVLWKQTTAGVK 189 LV + AYVS N YF+V+ L QYG LANR+V +E+ TDK+NKLDFVLWK TTAG+K Sbjct: 122 LVNQNHAYVSTQNNVYFAVNSLKQYGYLANRMVH-LEETDTDKKNKLDFVLWKITTAGIK 180 Query: 190 WNSPWGWGRPGWHVECAFLIDYSFKDQLTIHGGGVDLKFPHHENENAMHMALYDKPLTQH 249 WNS WG GRPGWHVECAFLIDY FK++LTIHGGGVDLKFPHHENENA+HMALY++P+T+H Sbjct: 181 WNSKWGLGRPGWHVECAFLIDYCFKNELTIHGGGVDLKFPHHENENALHMALYNQPITKH 240 Query: 250 WMHIGHLMFENQKMSKSLQNFLLAVDFLTIHDFRILRWLFYQKHYYHPLDLSQSLIEQAC 309 WMHIGHLM ENQKMSKSLQNFLLAVDFL HDFR+LRW+FYQKHY HP+DL+QSLIE+A Sbjct: 241 WMHIGHLMIENQKMSKSLQNFLLAVDFLNFHDFRVLRWIFYQKHYLHPIDLNQSLIEKAN 300 Query: 310 SDIKRIQKAVNVCRTWFVYSEQSAIPAPKQFEPVFKXXXXXXXXXXXITHIWKLVKQINH 369 +DI+RI K +NV RTW VYSEQS + +PKQ++PVF + IWKL+K+IN Sbjct: 301 NDIQRIAKTLNVARTWLVYSEQSELISPKQYDPVFSALLDNLNFANAVAAIWKLIKKINT 360 Query: 370 DVSKQNLSGLKEHLSHLEWALNILGIGFKSIHTKLNVQLIKKWASLRKNGQLDKADEVRQ 429 + ++ S L+E LS LEW++++LGI FKSIHTKLNV+LIK+W+ L K +DKAD++R+ Sbjct: 361 SIKTKDFSVLREQLSFLEWSIDLLGISFKSIHTKLNVRLIKEWSILHKQKAMDKADQIRK 420 Query: 430 KLIKKGLL 437 KLIKK LL Sbjct: 421 KLIKKMLL 428 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129] (658 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072919.1| DNA ligase [Mycoplasma genitalium G-37] 889 0.0 >ref|NP_072919.1| DNA ligase [Mycoplasma genitalium G-37] Length = 659 Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/653 (66%), Positives = 513/653 (78%) Query: 6 QIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQPDSPTQRVGGIV 65 +I+ +V +K YDYHYYVL +PL+ DFEYD LYK LQ LE+ HP+LIQ DSPTQRVGG Sbjct: 7 KIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQIDSPTQRVGGEA 66 Query: 66 VEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQNRFVVEPKIDGVSISLTYENG 125 V+ F K H +PMLSL+NAF T IA+FI NIN T +N FVVEPKIDGVSISLTY+NG Sbjct: 67 VKGFKKLNHNSPMLSLENAFSTKEIANFIDNINFQTNSKNEFVVEPKIDGVSISLTYKNG 126 Query: 126 LLTRALTRGDGLVGEDVLSNVKTIKSIPLTIPFHKQVEIRGEIFVDKKTFAQINENLAKP 185 +L ALTRGDG VGEDVL+NVKTIKSIPLTIPF K +EIRGEIFVDKKTF IN L KP Sbjct: 127 VLVHALTRGDGSVGEDVLNNVKTIKSIPLTIPFTKTIEIRGEIFVDKKTFLAINNQLEKP 186 Query: 186 FANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAVLAQLKQWNFPVSKA 245 FANARNLAAGT+RNLNSE++A+RKL+A FY++PN L +Q+ VL QLKQW FPVS Sbjct: 187 FANARNLAAGTIRNLNSEITAQRKLRALFYYIPNGLEESITTQTMVLEQLKQWKFPVSDT 246 Query: 246 VASFDRPEALIEYLEQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGFTSKFPRWALAYKFK 305 + F LI YLE FD+ R+QL F +DGLV+KL++ FY QLG TSK PRWA+A+KF Sbjct: 247 IRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFYQQLGATSKSPRWAIAFKFS 306 Query: 306 PKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFDYIKEKDIRLNDTVI 365 PKFVQTKL VL+T+GRTG++NYTA+L+ VNL+GT V+AATLHNFDYIK KDIR+NDTV+ Sbjct: 307 PKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAATLHNFDYIKTKDIRINDTVV 366 Query: 366 IYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPACQAPLVQYKDEVDQYCTNERCDQRNL 425 IYKAGEIIPKVL+V L R I EQ +CP+C + LV+ DEVDQYCTNE C +RN+ Sbjct: 367 IYKAGEIIPKVLKVNLEKRKNDTIIIQEQKYCPSCNSKLVKIVDEVDQYCTNETCKERNI 426 Query: 426 EAINYFVSKTAMDIQGLSIQTISKLYENNLVRSVVDLYHLKEHKAAVLALELKIGEVLFN 485 + INYFVSKTAMDI GL+I TI+KLYE+NLVRS+VDLY LK+ K VL L+LKIG+ LFN Sbjct: 427 QLINYFVSKTAMDINGLNINTITKLYEHNLVRSIVDLYDLKDKKNQVLKLDLKIGDKLFN 486 Query: 486 KLISSIEQSKTKGMARLLTGLGIKHVGQVLAKSLTKHFENIDALQSASMETLLELPDVGP 545 KL+ +IE SK KGMARLLTGLGIKHVG VLAK+L HF+NI ALQ AS+E L+ L DVG Sbjct: 487 KLVDNIENSKQKGMARLLTGLGIKHVGNVLAKNLANHFKNIKALQHASLENLISLNDVGI 546 Query: 546 TVAESLFNWFHNDNNLQLLAALKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFPISRD 605 TVAESL+NWFH+ N+LQL+ L+ V+ D L NF+T SIYFQK F+ITGSF ISRD Sbjct: 547 TVAESLYNWFHDPNHLQLIEQLELRQVKTDQLPLKINFETNSIYFQKRFLITGSFNISRD 606 Query: 606 TIKNLLVNKYDCRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINEPIWT 658 IK+LL K+DC+F + V VDFV+AG K T RK+ AK LNIPIINE IWT Sbjct: 607 QIKDLLSAKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINEAIWT 659 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508097|ref|NP_110046.1| hypothetical protein MPN358 [Mycoplasma pneumoniae M129] (534 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072920.1| hypothetical protein MG255 [Mycoplasma genitali... 372 e-105 ref|NP_072921.1| hypothetical protein MG255.1 [Mycoplasma genita... 96 1e-021 >ref|NP_072920.1| hypothetical protein MG255 [Mycoplasma genitalium G-37] Length = 365 Score = 372 bits (954), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/365 (52%), Positives = 252/365 (69%), Gaps = 2/365 (0%) Query: 1 METQNQIETLRYIFNQLNNQDKPQIIWFSGEGEDEKINFLIRLDNYFQPTFVQDLT-INF 59 ME++NQI L YIFNQ+N ++P+I+WFSGEGEDEKINFLIRL+++F+P FV++ +F Sbjct: 1 MESENQIAILDYIFNQVNQPNQPKIVWFSGEGEDEKINFLIRLNDFFKPKFVENTNDSSF 60 Query: 60 LPAFVKRNKKNPPNTLAKGNFVNIANKLLAVLARSLSWKQLNKPQQKXXXXXXXXXXXXX 119 L +F + L + NF NIANKLLAVL SL WKQLNKP Sbjct: 61 LLSFRNHVETKNSTPLTQANFANIANKLLAVLFGSLQWKQLNKPTGNWFLVILFLALLWL 120 Query: 120 XXX-XKKKVSKIFQFVNERGILSFIKEQWPIXXXXXXXXXXXXXPIFSITISQQKAILEN 178 K +++KI +FVN++GILSFIK+QWPI P+FS+TI+QQ I +N Sbjct: 121 RQCWLKLQLTKISKFVNQKGILSFIKQQWPILTTLVTVGTTLGTPVFSLTIAQQDGIKQN 180 Query: 179 AGHGAFVFLVIFSVFAIALGXXXXXXXXXXXXXXXRQKKSLQQLHQILSRLINKYFCFAN 238 AG+ F+FL+IFSVF+I+LG RQKK+L L ++LS+ I+KYF Sbjct: 181 AGNDVFIFLIIFSVFSISLGLVSSLIFLVSSLFSIRQKKTLDALDKVLSKFIDKYFFLDE 240 Query: 239 SEQNQTGRYQLKNTGVCFFYGFDFEEKEYITQAMNLLLLLKQTNCFVLVGCKESNMLLIK 298 E + +YQ KN GVCFFYGFDF++ E++ Q+MNL+LLLKQTNCF+LVGCKES M LIK Sbjct: 241 KEIKKQLKYQFKNNGVCFFYGFDFDQAEFLEQSMNLMLLLKQTNCFILVGCKESEMTLIK 300 Query: 299 NKVEPDINLKQSSLYLDLKSQISPLAQISKYNLLFEELALDADMFYLEDFFALLKTPRQI 358 NK+EP+INLKQ+S YLDL ++IS + QISK+NLLF +L L +++FYLEDFF L T +QI Sbjct: 301 NKIEPNINLKQNSFYLDLSNEISQVEQISKFNLLFRQLRLSSELFYLEDFFDYLTTAKQI 360 Query: 359 VNFLF 363 VNFLF Sbjct: 361 VNFLF 365 >ref|NP_072921.1| hypothetical protein MG255.1 [Mycoplasma genitalium G-37] Length = 119 Score = 95.5 bits (236), Expect = 1e-021, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 68/101 (67%) Query: 434 KDNSLLFKPELFNTHAYIPETYTQVTLENIDSDKRAQLVPLNWFSQQKFSDFIEEKINFW 493 ++NSL+ KPELF+ Y + Y + ++ +K L+PL W +QKF FIE + + Sbjct: 5 QENSLVLKPELFSLQKYTKDVYGLNVINQLNLNKHPMLIPLTWDKKQKFISFIESCVQKY 64 Query: 494 QTQQAENKVFYLTLGERIFFLVLVNKKFKQIKLEAALKYLN 534 + +N+VF LT+G+R+FFL+L+NK+FKQIKLE ALKYL Sbjct: 65 SQVKKDNQVFSLTVGKRVFFLLLINKQFKQIKLETALKYLG 105 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508098|ref|NP_110047.1| hypothetical protein MPN359 [Mycoplasma pneumoniae M129] (258 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072922.1| hypothetical protein MG256 [Mycoplasma genitali... 254 7e-070 >ref|NP_072922.1| hypothetical protein MG256 [Mycoplasma genitalium G-37] Length = 256 Score = 254 bits (649), Expect = 7e-070, Method: Compositional matrix adjust. Identities = 133/259 (51%), Positives = 178/259 (68%), Gaps = 4/259 (1%) Query: 1 MNYSYSFKEYIERFAKKVNSIDSEYFEFSSYIERMRTVFGLLIALICFSNVLCFLFIATW 60 M+++ +FKE + AKKVNS+DSEY+EFSS+IER+RT FGLLIAL SN++ F+ W Sbjct: 1 MHFNSNFKECFNKIAKKVNSLDSEYYEFSSFIERIRTTFGLLIALTVLSNLIIISFVLIW 60 Query: 61 FSTKGFGQHYRALIFTLFIPFVTSLLANIIFINLNRAFREYFKISSKSRSFLVICAFSSL 120 F T GFGQ R L FTLFIPF SLL I I LN +FR +F+I+ K+ FL C FSSL Sbjct: 61 FFTDGFGQ-LRLLFFTLFIPFFISLLVAIFLIFLNNSFRNFFQINEKNWLFLWTCVFSSL 119 Query: 121 PIVNIWLMLWWVAMIKRFTSNYAFAIFDKYNGLTSGVFIFDFADNVNFEGKLVSFDNTKD 180 PI N+WL++ IK F S+Y F I +KYN LTSG+F+FDFAD V+FE L ++ NT D Sbjct: 120 PIFNLWLIVRLNKTIKNFASDYGFKIVNKYNSLTSGIFVFDFADYVSFEANLTNWKNTND 179 Query: 181 TNRDFVHFYSEAKLKRDKITLQTNPIPH-ERMYVNRMYYQQKLSMGANQNSPSTAFANLK 239 NR+FV+F+ + ++K + P+ + +R+YVNR+YYQ KLS+G+NQ +P TAF NL+ Sbjct: 180 KNRNFVNFFET--ISKEKTGVVQKPVLNFQRLYVNRLYYQSKLSVGSNQQTPQTAFDNLR 237 Query: 240 RYVEHXXXXXXXXXXFILT 258 YVE+ +ILT Sbjct: 238 NYVENKQRETVRVKQYILT 256 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508099|ref|NP_110048.1| ribosomal protein L31 [Mycoplasma pneumoniae M129] (97 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072923.1| ribosomal protein L31 (rpL31) [Mycoplasma genit... 151 1e-039 >ref|NP_072923.1| ribosomal protein L31 (rpL31) [Mycoplasma genitalium G-37] Length = 97 Score = 151 bits (381), Expect = 1e-039, Method: Compositional matrix adjust. Identities = 71/97 (73%), Positives = 82/97 (84%) Query: 1 MKKDFHFPSQSVSFKCASCSNSFTIESTLKQKEITIDICGKCHPFYIGELTKQTVHGRAE 60 MKK HF SQ V F CASC+++FTI+ST KQK++ IDICGKCHPFYIG+LTKQTVHGRAE Sbjct: 1 MKKAIHFQSQPVVFNCASCNSNFTIDSTAKQKDLAIDICGKCHPFYIGQLTKQTVHGRAE 60 Query: 61 KLSGKFNAGKAFLENKTPKKAKGKTEEYTKHRSLNEL 97 KLS KFNAGKAFLENKT K + K E+ T+HRS+NEL Sbjct: 61 KLSQKFNAGKAFLENKTKKSNQAKVEKQTRHRSINEL 97 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508100|ref|NP_110049.1| peptide chain release factor 1 [Mycoplasma pneumoniae M129] (359 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072924.1| peptide chain release factor 1 (prfA) [Mycoplas... 602 e-174 >ref|NP_072924.1| peptide chain release factor 1 (prfA) [Mycoplasma genitalium G-37] Length = 359 Score = 602 bits (1551), Expect = e-174, Method: Compositional matrix adjust. Identities = 280/359 (77%), Positives = 320/359 (89%) Query: 1 MEFDKQFFSSVEKIVELAEQLEKDLNKPDLTFEQIKAINKELKHKQPLVVKFKEFKRLID 60 M+FDKQ F +VEKIVEL EQLEKDLNKP+L+FEQIK INKELKHKQPL+VKFKE ++L++ Sbjct: 1 MDFDKQLFFNVEKIVELTEQLEKDLNKPNLSFEQIKVINKELKHKQPLIVKFKELQKLVE 60 Query: 61 QXXXXXXXXXXXXXXXXHDEAKKELERVRSVVPEYEEALKLLLLPIDENNQKNVIVELRP 120 H+EAKKELE++++ +P EE +K LLLP+DENNQKNVIVE+RP Sbjct: 61 NANEAEQILNNSSLKELHEEAKKELEKIKASLPSLEEEIKFLLLPVDENNQKNVIVEIRP 120 Query: 121 AAGGDESCIFLADLFNMYRNFCSNKGWKLQINEMIPSSVGLNFVSFEVNGVDVFAKLKFE 180 AAGGDESCIFL+DLFNMY+N+C++K W +++NE+IP+SVG+NFVSF VNG DVFAKLKFE Sbjct: 121 AAGGDESCIFLSDLFNMYKNYCTSKNWTVELNEIIPASVGINFVSFAVNGTDVFAKLKFE 180 Query: 181 SGVHRVQRVPATESKGRVHTSTVTVAVLPQLEAVEVHINPADLRVDTYRASGAGGQHVNR 240 SGVHRVQRVP TE+KGRVHTSTVTVAVLPQLE VE+ INP+DLR+DTYRASGAGGQHVNR Sbjct: 181 SGVHRVQRVPLTEAKGRVHTSTVTVAVLPQLEEVEITINPSDLRIDTYRASGAGGQHVNR 240 Query: 241 TESAVRITHLPTGIVVSCQEGKSQFTNRDTAMKMLRAKLWEKAQNEQLSTQAGLRKSQVG 300 TESAVRITHLPTGIVV+CQEGKSQF+NRD AMKMLRAKLWE AQN+QLSTQA LRKSQVG Sbjct: 241 TESAVRITHLPTGIVVACQEGKSQFSNRDKAMKMLRAKLWENAQNKQLSTQADLRKSQVG 300 Query: 301 SGDRAEKIRTYNYPQNRVTDHRIKLTVNKLNTIILGDLDEIIEALQADEKKQQLENFFS 359 SG+RAEKIRTYNYPQNR+TDHRIKLT+NKLNT+ILGDLDEIIEALQADEKKQQLE F S Sbjct: 301 SGERAEKIRTYNYPQNRITDHRIKLTINKLNTVILGDLDEIIEALQADEKKQQLEKFIS 359 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508101|ref|NP_110050.1| hemk family, similar to methyltransferase (S-adenosyl-methionine dependent) [Mycoplasma pneumoniae M129] (453 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072925.1| hypothetical protein MG259 [Mycoplasma genitali... 471 e-135 >ref|NP_072925.1| hypothetical protein MG259 [Mycoplasma genitalium G-37] Length = 456 Score = 471 bits (1213), Expect = e-135, Method: Compositional matrix adjust. Identities = 231/454 (50%), Positives = 306/454 (67%), Gaps = 3/454 (0%) Query: 1 MNLYELFLNQKLLYGTDPHFNGVFLTLLEKFGLHFKDLTALWKHAKTITDFDEQGIVNAL 60 M LYE FLNQKL+Y + PHFNGVFLT+LE +G FK + LWK IT I L Sbjct: 1 MTLYEFFLNQKLVYQSSPHFNGVFLTILEHYGFQFKTIDKLWKSKLLITSELTDKIKQQL 60 Query: 61 KAYFVDQLPLPYITGSVKLGSLTFKTQPGVFIPRADSLALLKVVKAQNLKTAVDLCCGSG 120 K YF++++PLPY+ G+++L LTFKT+ GVFIPR DSLAL+ V + +KTA+DLCCGSG Sbjct: 61 KCYFIEKIPLPYLLGTIQLRKLTFKTKKGVFIPRIDSLALIASVNLKKIKTALDLCCGSG 120 Query: 121 TLAIALKKRFPHLNVYGSDXXXXXXXXXXXXXXXXMVEVQWIEADFLAALAQVNTPIDLI 180 TLAIALKK+ L+VYGSD V + WIEAD+ ++ TPIDLI Sbjct: 121 TLAIALKKKCDTLDVYGSDIDIQALKLAQQNALINNVSINWIEADWFDCFNKIKTPIDLI 180 Query: 181 ITNPPYLNESQLDQTLNHEPRNSLV-ADGNGILFYQKLYNFLLGNRQVKQVILECSPTQK 239 +TNPPYL ++QL++TLN+EP++SLV + N Y++L+N LL R +KQ+I ECS QK Sbjct: 181 VTNPPYLKKTQLNKTLNYEPKHSLVFQNKNSYFAYKQLFNLLLTKRSIKQLIFECSLFQK 240 Query: 240 KEFLALFSIFKTSEIYTSHKQFIGLSIDNTKLPVLKIAQTKQIKALLDKGMTAIIPTDTQ 299 + L LFSIFK+ I+ KQFIG+ +DN KLPV+ I TK IK LL G+ I+ TDTQ Sbjct: 241 ERLLNLFSIFKSRPIFNFQKQFIGMKVDNQKLPVVDIKNTKTIKQLLKMGLAGIVNTDTQ 300 Query: 300 IGLMSYCQQDLDHIKQRDPNKHYVQFLAPSQINXXXXXXXXXXXXFWPGAYTFIVDGQSY 359 +GL+SY + LD IKQR NKHYV ++ FWPG+YTFI + +SY Sbjct: 301 MGLISYSESTLDKIKQRALNKHYVSMFGLEELKKLPKKLQQIASYFWPGSYTFIKNNKSY 360 Query: 360 RLPNSPQLLKLLKTVGLIYCTSANQAKQKPFGKLSAYQNDPYWVQQNCFIVQNSFK--SN 417 R+P + LL L +G ++CTSAN + QKP+ KLS YQND YW++Q CFI++++ K SN Sbjct: 361 RVPKNLGLLNLFNAIGRVFCTSANISNQKPYTKLSDYQNDSYWIKQPCFIIRSTSKVQSN 420 Query: 418 NEPSLIYNLDTKQIVRGSSTQLQRFQALLAKHKL 451 N PSL+YNLDTKQ+VR ++ Q ++F L+ KH+L Sbjct: 421 NTPSLVYNLDTKQLVRTTAKQTKQFHKLITKHQL 454 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508102|ref|NP_110051.1| hypothetical protein MPN363 [Mycoplasma pneumoniae M129] (102 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 120 3e-030 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 85 2e-019 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 120 bits (302), Expect = 3e-030, Method: Compositional matrix adjust. Identities = 58/89 (65%), Positives = 66/89 (74%) Query: 14 LGLSAILAACGAKGKFDQVDDGKIVLASSLTSKNAANALQAVVEKYNQVKGGNDYPIEIT 73 G S +L AC +FDQVDDGKI LASSLTSK AA AL+ VV+KYN K DYPIEI Sbjct: 14 FGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYNDTKDPGDYPIEIV 73 Query: 74 QITGGYDGGRGNLQTKLSVKDKTTFYNLI 102 QI GGYDGG+ ++QTK+S KDK FYNLI Sbjct: 74 QIAGGYDGGKKDVQTKVSTKDKNNFYNLI 102 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 84.7 bits (208), Expect = 2e-019, Method: Compositional matrix adjust. Identities = 50/104 (48%), Positives = 64/104 (61%), Gaps = 5/104 (4%) Query: 1 MKFKYGATLFSGFLGLSAILA-ACGAKGKFDQVDDGKIVLASSLTSKNAANALQAVVEKY 59 MKFK L S LG A+ AC A +FDQVDDGKI LA+ +TS +A+ +L ++ KY Sbjct: 1 MKFKLFF-LSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKY 58 Query: 60 NQVKGGNDYPIEITQI--TGGYDGGRGNLQTKLSVKDKTTFYNL 101 N K NDYP+E+ + G Y G+ +LQ KL KDK FYNL Sbjct: 59 NSQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNL 102 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508103|ref|NP_110052.1| hypothetical protein MPN364 [Mycoplasma pneumoniae M129] (677 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 538 e-155 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 388 e-109 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 538 bits (1387), Expect = e-155, Method: Compositional matrix adjust. Identities = 320/709 (45%), Positives = 430/709 (60%), Gaps = 98/709 (13%) Query: 1 MELPLDNVDLSKLSPNFLKFNERISGVAKKANYAIPVSLSTEVLALNGPVLHYILNSA-K 59 M L D V++ KL PNFL FN RI G+ YAIP+S+ST+++ +NGPVLHYILNSA K Sbjct: 117 MALNFDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARK 176 Query: 60 GGNETAVTQRTASTNQQNTLQNSLKINESDPITKELWEKIQKAAETNGK--AKEQGKSKX 117 G T+ T + +++ + +L+I +D T +LW+ IQ A+ N KEQ + K Sbjct: 177 EGTPTSTTVQATVSSRSAEKKGTLEI-ANDSETTKLWQNIQTTAQNNSNETTKEQKQVKR 235 Query: 118 XXXXXXXXXXXXXXXXXXXXNTTKDGKATSDEAIKKTWGDYQKVENGLKGYTFKASVFEN 177 +TTK SD IK+ WG+YQ+V+ GLK +TFKAS+FEN Sbjct: 236 SSSSSSTTSTTGETK-----DTTK-----SDNKIKEFWGEYQEVDGGLKNFTFKASIFEN 285 Query: 178 WHELLDFSARIARSFTN-IHTKETKKGTDIQGVLGIDSTPNALFTSVFAAGGGNYDNFFY 236 W+E LDF+ RIA SF + K G D+QGVLG+DS+ NAL+ +VFAAG NYDNFF+ Sbjct: 286 WNETLDFATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFF 345 Query: 237 KV--QDGRADFSNFKNKETSYQNLQKVFSDYKELIDKNGLFVNKGGSYSSNFQKFHQLAY 294 + + G AD+SNF NK++SYQNL+ V++D+ +LI NGLFVN+GGSYSSNF+KFHQLA+ Sbjct: 346 NIDKRTGYADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAF 405 Query: 295 SISSTSGFFYSFAGNSAKRLKFDDGNFIEFPRFTQPVKAPNKTTQXXXXXXXXXXXXXXG 354 S+SS+ G+ Y FA ++AKRLKF + IE+P FTQ ++APN + G Sbjct: 406 SVSSSGGYSYYFAKDNAKRLKFSNYA-IEYPSFTQTIQAPNSS---------ETESNLLG 455 Query: 355 TFEIEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIYLYKAQIPEGKNKGDNAILITNQ 414 TF++ + I LYK IP GK +G +AILI+N Sbjct: 456 TFKLSEKD----------------------------INLYKGSIPSGKQQGVDAILISNP 487 Query: 415 TVIDKLEKAAKEDGKSGTQVSTIASKSTTKENQENKIIGYTSTDNLREDNKNIFDIDDLN 474 +I+ LE+A +++ G++ +T NKIIGYT+T N+ DN+NIF + LN Sbjct: 488 NLINILEQAKQKNTAQGSESTT------------NKIIGYTTTANVNVDNQNIFSVSKLN 535 Query: 475 DEKYDRKIIVSATEEVLEQSNTLQSEEAVVLPAPAKYKASDSTKIAITQEPNLIGIHANE 534 +E++ RKIIV+ATEE L+QS TLQS E++VLP P KYK++D K+ ITQ PNLIGIHANE Sbjct: 536 NEQFQRKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIGIHANE 595 Query: 535 KENEETRKFVNWFLNSEQT-WEXXXXXXXXXXXXXXRTPAQFFADSASYILPLKKTFDNA 593 KEN ET+KFVNWFLN T W +T A++F D ASYILPLK+ F+ + Sbjct: 596 KENIETKKFVNWFLNQSITDWN--SNNQQKNSDQTTKTAAEYFTDQASYILPLKEKFNKS 653 Query: 594 ---------------------------NKKEDQSKANNKTNSQRTNTYIEKALEIFKGIS 626 N S A KTN+ +NT+ KALE+F+ + Sbjct: 654 SDLELKGSSSSSNLTTSSASASLLISNNSSTASSPAPKKTNN-NSNTFTAKALELFQQAA 712 Query: 627 QNQITSYSDPSDFRSGRFRDGIGSNFNAVVNSKVDFNKFINNFIASLGS 675 N+I +SDPSDFR+G FR+ I S+FNA VNSKV FN+F+ NFI SLGS Sbjct: 713 NNEIIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLGS 761 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 388 bits (996), Expect = e-109, Method: Compositional matrix adjust. Identities = 253/680 (37%), Positives = 368/680 (54%), Gaps = 102/680 (15%) Query: 1 MELPLDNVDLSKLSPNFLKFNERISGVAKKANYAIPVSLSTEVLALNGPVLHYILNSAKG 60 MEL D VD S P+FL FN IS V + YA+P ++S EVL LNGPVLHYIL+SAK Sbjct: 118 MELSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKK 177 Query: 61 GNETAVTQRTASTNQQNTLQNSLKINESDPITKELWEKIQKAAETNGKAKEQGKSKXXXX 120 + T ++ +AS N + SD T LW K++ AA+ N + E K Sbjct: 178 DSNTTLSTHSASNNS----NKGTMVVASDSETSSLWTKLEAAAKMNAQTNETQVLK---- 229 Query: 121 XXXXXXXXXXXXXXXXXNTTKDGKATSDEAIKKTWGDYQKVENGLKGYTFKASVFENWHE 180 N T+ SD IKK WGDYQ+V+ GLK YTFKASVF NW + Sbjct: 230 -----------SNSSESNQTQ----ASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKD 274 Query: 181 LLDFSARIARSFTNIHTKETKKGTDIQGVLGIDSTPNALFTSVFAAGGGNYDNFFYKVQD 240 L DF+ RIA+SFT + T TKKG ++Q V GI S NAL+T++FA+G +Y+NF + +++ Sbjct: 275 LNDFATRIAKSFTKLQT-TTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKN 333 Query: 241 GRADFSNFKNK-ETSYQNLQKVFSDYKELIDKNGLFVNKGGSYSSN-FQKFHQLAYSISS 298 R +FSNF NK T++QNL+ +F+ +K LID+NGL N + N + KF+QLA+ SS Sbjct: 334 QRINFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSS 393 Query: 299 TSGFFYSFAGNSAKRLKFDDGNFIEFPRFTQPVKAPNKTTQXXXXXXXXXXXXXXGTFEI 358 T+ F YSFA +S KRL +D T K + GT + Sbjct: 394 TARFPYSFASDSVKRLIVNDK--------TIENKNNKSVFEVNLSSDSDNNSNLIGTVSL 445 Query: 359 EDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIYLYKAQIPEGKNKGDNAILITNQTVID 418 E+ + LY+ Q+ K G +A+LI ++T+I+ Sbjct: 446 ENSKQ---------------------------VSLYEKQVDSNKQIGVDALLIKDETLIN 478 Query: 419 KLEKAAKEDGKSGTQVSTIASKSTTKENQENKIIGYTSTDNLREDNKNIFDIDDLNDEKY 478 L K+ K +QVS ++ T++ Q + +T+ + D K IFD+ LN + Sbjct: 479 HL-KSLK------SQVSAKSASETSQTKQNKTFLAFTT---VNADQKAIFDVGKLNGKT- 527 Query: 479 DRKIIVSATEEVLEQSNTLQSEEAVVLPAPAKYKASDSTKIAITQEPNLIGIHANEKENE 538 KII++ATE + +TLQ +EA+VL AP +++++D IA+ Q P+LIGIHANE+E+ Sbjct: 528 -AKIIINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDI 586 Query: 539 ETRKFVNWFLNSEQTWEXXXXXXXXXXXXXXRTPAQFFADSASYILPLKKTFDNANKKED 598 ET+KFVNW+LN++ WE +TPA++ AD ASY+LP K +N N Sbjct: 587 ETKKFVNWYLNTKVQWE----------ENSIKTPAEYVADKASYLLPFKNRLNNTN---- 632 Query: 599 QSKANNKTNSQRTNTYIEKALEIFKGISQNQITSYSDPSDFRSGRFRDGIGSNFNAVVNS 658 N +++ A+ F + +T +++P+DF S + RDG+ SN NA +N+ Sbjct: 633 -----------SYNEFVKTAVSQF---ADKNVTKFAEPADFLSNKVRDGVKSNLNAAINN 678 Query: 659 K-VDFNKFINNFIASLGSDI 677 +DF+ FIN+ LGSD+ Sbjct: 679 HSIDFDSFINDLTDYLGSDV 698 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508104|ref|NP_110053.1| hypothetical protein MPN365 [Mycoplasma pneumoniae M129] (268 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508105|ref|NP_110054.1| involved in cytadherence [Mycoplasma pneumoniae M129] (272 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 61 1e-011 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 60.8 bits (146), Expect = 1e-011, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 16/108 (14%) Query: 91 SYILIFQAAPRA--TWVFERKIKLALPYVKQESQGSDDQGSNGKGSLYTTLQDLLVEQPV 148 SY++ F + W +K +L +P V + + L++L++EQP+ Sbjct: 109 SYVVEFTNSTNIGIKWTMVKKYQLDVPNVSSD--------------MNQVLKNLILEQPL 154 Query: 149 TPYTPNAGLARVNGVAQDTVHFGSGQESSWNSQRSQKGLKTTPLPMPS 196 T YT N+ LA+ G Q VH GSGQ + W SQR+Q L P P S Sbjct: 155 TKYTLNSSLAKEKGKTQREVHLGSGQANQWTSQRNQHDLNNNPSPNAS 202 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508106|ref|NP_110055.1| involved in cytadherence [Mycoplasma pneumoniae M129] (322 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 150 1e-038 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 150 bits (380), Expect = 1e-038, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 104/154 (67%), Gaps = 8/154 (5%) Query: 173 NVITQLYHTSTAQLAYLNGQIVVMSSARVPSLWYWVV---GEDQESGKATWWAKTELNWG 229 NVITQLY+ ST++LA N IVVM ++ +PS+WYWVV ++ S K TW+A T L+WG Sbjct: 289 NVITQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWG 348 Query: 230 TDKQKQFVENQLGFXXXXXXXXXXXXXXTQGLTQPAYLIAGLDVVADHLVFAAFKAGAVG 289 DKQKQFVENQLG+ ++ TQPAYLI+G+D V D ++F+ FKAG+VG Sbjct: 349 EDKQKQFVENQLGYKETTSTNSHNFH--SKSFTQPAYLISGIDSVNDQIIFSGFKAGSVG 406 Query: 290 YD---MTTDSNASTYNQALVWSTTAGLDSDGGTR 320 YD ++ S++ST +QAL WSTT LDS G + Sbjct: 407 YDSSSSSSSSSSSTKDQALAWSTTTSLDSKTGYK 440 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508107|ref|NP_110056.1| hypothetical protein MPN368 [Mycoplasma pneumoniae M129] (180 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508108|ref|NP_110057.1| hypothetical protein MPN369 [Mycoplasma pneumoniae M129] (253 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508109|ref|NP_110058.1| hypothetical protein MPN370 [Mycoplasma pneumoniae M129] (737 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 202 8e-054 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 202 bits (515), Expect = 8e-054, Method: Compositional matrix adjust. Identities = 140/401 (34%), Positives = 202/401 (50%), Gaps = 68/401 (16%) Query: 14 LTRFSTGFNLAGSVLDQVLDYVPWIXXXXXXXXXXXXVDDITAPKXXXXXXXXXXXXXXX 73 + RF+TG NL S DQ LD++PWI ++ Sbjct: 747 VQRFTTGPNLDSSTFDQFLDFLPWIGNGKPFSNSPSPSTSASSSTP-------------- 792 Query: 74 XXXFLPTFSNVGVGLKANVXXXXXXXXXXXXXKDIPKWPTLDPANLQLWTGAGWRNDKAS 133 LPTFSN+ VG+K+ + K+ +W + + +WTGAG+R A+ Sbjct: 793 ----LPTFSNINVGVKSMITQHLN--------KENTRWVFIPNFSPDIWTGAGYRVQSAN 840 Query: 134 NKQSDENHTTFKXXXXXXXXXXXXXXXXXXNPDSLKQDKISKSGQNLTTQDGAPQSNSTT 193 K N F+ +P+S +K++ SG + Sbjct: 841 QK----NGIPFE-------QVKPSNNSTPFDPNS-DDNKVTPSG--------------GS 874 Query: 194 ESASNYDHLPPNLTPTSDWPNALSFTNKNNAQRAQLFLRGLLGSIPVLVNRSGSDDSNKF 253 + Y LP +++PTSDW NAL+FTNKNN QR QL LR LLG+IPVL+N+SG + Sbjct: 875 SKPTTYPALPNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLINKSGDSNDQFN 934 Query: 254 QATDQKWSYTDLKSDQTKLNLPAYGEVNGLLNPALVETYFXXXXXXXXXXXXXXXXXXXF 313 + ++QKW K++ + NLP +GEVNGL N AL+ TY F Sbjct: 935 KDSEQKWD----KTETNEGNLPGFGEVNGLYNAALLHTY-----GFFGTNTNSTDPKIGF 985 Query: 314 KIPEQNNDSKAVLITPGLAWTPQDVGNLVV-SGTSLSFQLGGWLVTFTDFVKPRAGYLGL 372 K + ++ S + L+ GL WT QDVGNLVV + TS FQLGGW +TFTDF++PR GYLG+ Sbjct: 986 KA-DSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYLGI 1044 Query: 373 QLTGLDASDATQRALIWAKRPWAAFRGSWVNRLGRVESVWD 413 L+ L + +IWA +PW +F+GS+++ G +S+WD Sbjct: 1045 TLSSLQ-----DQTIIWADQPWTSFKGSYLDSDGTPKSLWD 1080 Score = 64.3 bits (155), Expect = 4e-012, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 10/127 (7%) Query: 612 WTTASLATG-LTVVGHFXXXXXXLKRQ---QFSYTRPDEVALRHTNAINPRLTPWTYRNT 667 + TA+L G +T VG + +R F+Y +P +++++H A++ LTPWT+ N Sbjct: 15 FLTAALTLGVITGVGGYFLFNQNKQRSSVSNFAY-QPKQLSVKHQQAVDETLTPWTWNNN 73 Query: 668 SFSSLPLTGENPGAWALVR---DN-TAKGITAGSGSQQTTYDPXXXXXXXXXXXXFVLRR 723 +FSSL +TGENPG++ LVR DN +T S Y F +RR Sbjct: 74 NFSSLKITGENPGSFGLVRSQNDNLNISSVTKNSSDDNLKY-LNAVEKYLDGQQNFAIRR 132 Query: 724 YDLAGRC 730 YD GR Sbjct: 133 YDNNGRA 139 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508110|ref|NP_110059.1| hypothetical protein MPN371 [Mycoplasma pneumoniae M129] (211 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508111|ref|NP_110060.1| similarity to pertussis toxin subunit s1 [Mycoplasma pneumoniae M129] (591 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508112|ref|NP_110061.1| hypothetical protein MPN373 [Mycoplasma pneumoniae M129] (204 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508113|ref|NP_110062.1| hypothetical protein MPN374 [Mycoplasma pneumoniae M129] (229 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508114|ref|NP_110063.1| hypothetical protein MPN375 [Mycoplasma pneumoniae M129] (129 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508115|ref|NP_110064.1| hypothetical protein MPN376 [Mycoplasma pneumoniae M129] (1140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508116|ref|NP_110065.1| hypothetical protein MPN377 [Mycoplasma pneumoniae M129] (74 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508117|ref|NP_110066.1| DNA polymerase III alpha subunit [Mycoplasma pneumoniae M129] (872 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072927.1| DNA polymerase III, subunit alpha (polC-2) [Myc... 930 0.0 >ref|NP_072927.1| DNA polymerase III, subunit alpha (polC-2) [Mycoplasma genitalium G-37] Length = 874 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/870 (54%), Positives = 606/870 (69%), Gaps = 6/870 (0%) Query: 1 MFVNLHTNSYYNFLNSTLSPXXXXXXXXXXXXXXXCLTDPNLFGATEFFLACQKAHIKPL 60 MFVNLHTNSYYNFLNS LSP +TDPNLFGA EFF+ C++ +IKP+ Sbjct: 1 MFVNLHTNSYYNFLNSALSPKKLVNLAINDQQKAVAITDPNLFGAVEFFITCKQNNIKPI 60 Query: 61 IGLSVTVRHYEQNVNLLVIAQTNRGYQNLMCLALVKDQPDLQLEPFLD---GNVVIICTQ 117 IGL++TV + + +V LL+IA++N+G+Q L +AL+ Q L++ +D VIIC+ Sbjct: 61 IGLNLTVEYQKNDVKLLLIAKSNKGFQTLNKIALI--QQKLEINSLVDQLTDIAVIICSL 118 Query: 118 TELRLNTANPVYLAHGLSGRYPKIAVTQKPVKCQNTNKDXXXXXXXKQISQINSEHFQPL 177 T + +T VY A G+ IA+ V C+ TN D KQ+ Q + Sbjct: 119 TTWK-STYKDVYQAKGIEINQTPIAILANAVNCEKTNSDQVVLTVLKQMKQNQTGKITTF 177 Query: 178 EWKLSRSLNEIQLDPPLLQQLRHQPFLSQKAAQQIFSEEELGNLQKLVEQSQWDLTKLKA 237 +W L + LN+I ++ L + QPFL QK AQQ+FSE EL NL LV + + DL LKA Sbjct: 178 DWDLKQKLNQISINENLKVKSEIQPFLDQKTAQQLFSETELNNLNDLVNRCELDLEHLKA 237 Query: 238 SSLQVSHNDAQMLSEQCQLALTEFLKLNPQLNKQLYEERLAKELEIINSLHFASYFLVVS 297 +SL ++ NDA +L CQ L +FL N LNK+ Y+ RL KEL +IN L+FASYFLVV+ Sbjct: 238 ASLSLTDNDAAVLESLCQTNLKQFLDKNQDLNKKAYQLRLEKELNVINKLNFASYFLVVN 297 Query: 298 DLVQFAHNNDILIGPGRGSAVGSLVAFLLKITQIDPVANNLIFERFISRHRQGLPDIDID 357 DLV +A DILIG GRGSAVGSLVAFLL IT+IDPV + LIFERFIS HRQ LPDIDID Sbjct: 298 DLVNYAFKKDILIGSGRGSAVGSLVAFLLNITKIDPVQHQLIFERFISTHRQDLPDIDID 357 Query: 358 IMETKRDLVIDYVMQKYGREQCAQIVTFQKFKTRSALRDVGKVFNHIEGAEDLLGKLPKD 417 IME KR +I+Y+ +KYG+E CAQIVTFQ+FKTRSA+++V K+FN ++ +LG LPKD Sbjct: 358 IMENKRAEMINYLFEKYGKENCAQIVTFQRFKTRSAVKEVAKLFNDYGISDMILGVLPKD 417 Query: 418 KSLLELDVNGVTDPVLQLSLKSFRLLWEVAREIINFPRQPSIHASGVVIVTEPLITTIPL 477 +++ D+ D LQL L+ F L+ E+A I++FPRQ SIHASG+VI + LI TIPL Sbjct: 418 QTITFTDLKATEDSALQLCLQQFGLIVELALAIVDFPRQSSIHASGIVIASNSLIKTIPL 477 Query: 478 MVGNNNNYVTQVSMDWLEWYNLNKFDLLGLINLTMIHEVVQAVKPKEVSVQQFLQQIPLD 537 + +NN+++TQVSM+WL ++NLNKFDLLGLINLTMI +V+ +KP +V QFL I Sbjct: 478 LQLDNNHFLTQVSMEWLSFFNLNKFDLLGLINLTMISDVITQIKPSNQTVNQFLNTISWT 537 Query: 538 DEATFTNLTNQATLGVFQLESFGMKKVLKQIKPHNLHDLAIVLALYRPGPQDNINTFIAN 597 D+ TF NL N+ TLG+FQLESFGMKK+L QIKP ++ LAIVLALYRPG QDNIN FI Sbjct: 538 DQNTFINLVNEDTLGIFQLESFGMKKLLVQIKPKTINQLAIVLALYRPGAQDNINLFINR 597 Query: 598 RNLGFDTSDIDPRILPILKETYGVLIFQEQVINIAKTVANYSLETADSFRRAISKKNLQV 657 + G+D SDIDPRILPI+K TYGVLIFQEQ+INI K VANYSLE ADSFRRAISKK++++ Sbjct: 598 LHNGYDQSDIDPRILPIVKNTYGVLIFQEQIINIVKVVANYSLEEADSFRRAISKKDVKL 657 Query: 658 IQDNMRSFYEGALANNFSLKAATTIFNYIQRFAGYGFNLSHALGYALLSYWTAWLKTHYF 717 IQ N R+F+E A+ NNF LK T IF+YI+RFA YGFNLSHALGYALLSYWTAWLKT+Y Sbjct: 658 IQKNKRNFFERAVQNNFDLKTTTKIFSYIERFANYGFNLSHALGYALLSYWTAWLKTNYP 717 Query: 718 EQFNLWWLNHXXXXXXXXXXLLNEFISSGYEICPPLINKAKSDFSVQDKKLYLGFKLING 777 F LW LNH ++ SG EI PPL+NKA+ + +++KK+YLG LI G Sbjct: 718 VYFYLWLLNHFQSSKDKQKLIIRTLEKSGIEIYPPLLNKAQPNSVIENKKIYLGLNLIKG 777 Query: 778 IGDKQAHALEHVQEVLKQNPNLSLIATVNLCLSKTVGGLELKDITLLQQAGCFNCFNYTV 837 I D+ L+ VQ +++ NL L V+ CL KT+G + LKD+ LL+ GCF+ F YT Sbjct: 778 INDRYIQNLQKVQHLIQTQNNLQLTDVVSWCLDKTIGDIPLKDLLLLKTMGCFDFFEYTY 837 Query: 838 DFNLAKSFWVQSNHELFPKIPLDQPPVINW 867 DFN AK FW++S+H LF ++PL++ W Sbjct: 838 DFNDAKDFWIKSDHLLFTRMPLEKKDSNFW 867 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508118|ref|NP_110067.1| 5'-3' exonuclease (complete) [Mycoplasma pneumoniae M129] (291 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072928.1| 5'-3' exonuclease, putative [Mycoplasma genital... 397 e-113 >ref|NP_072928.1| 5'-3' exonuclease, putative [Mycoplasma genitalium G-37] Length = 291 Score = 397 bits (1019), Expect = e-113, Method: Compositional matrix adjust. Identities = 188/291 (64%), Positives = 230/291 (79%) Query: 1 MKNAILIDGNSLAYRAYFATWQQVEFAKLHNLPFNNAIRTMLMMCWNLLQSKQYDYGVIS 60 MK AILIDGNSLAYRAYFATW+QVE+AK +NLPFNNAIRTML+MCWNL+++ Y YG++S Sbjct: 1 MKKAILIDGNSLAYRAYFATWKQVEYAKQNNLPFNNAIRTMLLMCWNLIKANVYQYGIVS 60 Query: 61 FDTKAPTFRDQLYSEYKSKRSKTPSELLVQIPVVKESLRHLGFLVCEQDGFEADDLIGSY 120 FDTKAPTFRDQ+Y YK KR KTP ELLVQIP++K++L +LGFLVCE+DGFEADDLIGSY Sbjct: 61 FDTKAPTFRDQIYEGYKQKRVKTPVELLVQIPLIKQALVYLGFLVCEKDGFEADDLIGSY 120 Query: 121 ARLMTQNNVAVDIYSSDRDLLQLVDSMTSVWLCVKGTKEMKEYNTDNFAEQFFGLTPKQV 180 A L T+ + VDIYSSDRD+LQLV++ T+V+LC+KGTKEM YN +NF F+GL P QV Sbjct: 121 ANLFTKQEITVDIYSSDRDMLQLVNAFTNVFLCIKGTKEMVMYNNENFKSLFYGLAPYQV 180 Query: 181 IEYKGLVGDNSDNLTXXXXXXXXXXXDLLKQYGTIDNIFANFDKLSKALQTILQGQIDTA 240 +EYKGLVGDNSDNL +LL+QYGTIDNI+ NF+ L LQ +L Q + A Sbjct: 181 VEYKGLVGDNSDNLAGIKGIGPIKGIELLQQYGTIDNIYTNFNNLPNQLQKLLNNQKEIA 240 Query: 241 KKFSFLASIKTDIKLNDDIVHAALKPIDKQALLELLDKYGIKALAQKFSQL 291 K FSFLA IKTDI+L+ +I LKPI KQAL++LL + I L +KFS++ Sbjct: 241 KTFSFLAKIKTDIELDQNIDLTGLKPIQKQALIQLLSENKINTLVEKFSKI 291 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508119|ref|NP_110068.1| formamidopyrimidine-DNA glycosylase [Mycoplasma pneumoniae M129] (277 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072929.1| formamidopyrimidine-DNA glycosylase (mutM) [Myc... 352 2e-099 >ref|NP_072929.1| formamidopyrimidine-DNA glycosylase (mutM) [Mycoplasma genitalium G-37] Length = 284 Score = 352 bits (903), Expect = 2e-099, Method: Compositional matrix adjust. Identities = 173/274 (63%), Positives = 205/274 (74%), Gaps = 2/274 (0%) Query: 1 MPELPEVATVITELKSCVLNKPVKQVKVHLDKVLKNTNVKQLNDALVNHSFVDIKRRGKY 60 MPELPEV TVI ELK VLNKP+ QV+V+L KVLKN + + LN L N F DIKR+GKY Sbjct: 1 MPELPEVTTVINELKETVLNKPLDQVQVNLRKVLKNIDPQLLNKQLKNQFFTDIKRKGKY 60 Query: 61 IIFCLSNGLFLVSHLRMEGKYFFEAKGSQFDLNHVLVEFLFQDGDQLNYHDTRQFGTFHL 120 IIF LSNGL+LVSHLRMEGKYFFE +GS+F+ HVLVEF F DG QLNYHDTRQFGTFHL Sbjct: 61 IIFLLSNGLYLVSHLRMEGKYFFEERGSKFNQKHVLVEFHFDDGSQLNYHDTRQFGTFHL 120 Query: 121 FNRYQFENARELNKLALDPLDQEFNHQAIFNKGHKSNKKIKTFILDQTNISGIGNIYADE 180 + + E A +LNKLA DPL+ F+++ IF K S +K+KTFILDQT ISGIGNIYADE Sbjct: 121 YEK--LEQAAQLNKLAFDPLEAGFDYRKIFQKAQNSKRKVKTFILDQTVISGIGNIYADE 178 Query: 181 ILFASKIHPETLAKNLNLSQYQLICQNATDILKKAVEMXXXXXXXXXXXXDHTGGYQHFL 240 ILFASKI+PET+ L + + +++C+NAT IL KA+ M DHTGGYQ+FL Sbjct: 179 ILFASKINPETMVDQLTIKEIEILCKNATKILAKAIVMKGTTISSFSFKKDHTGGYQNFL 238 Query: 241 KIHGKKGKQCQSCNTTIIKKKINGRGSYICEKCQ 274 K+H KK + C CN I+KKKINGRGSY C CQ Sbjct: 239 KVHTKKDQPCSVCNQLIVKKKINGRGSYFCLNCQ 272 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508120|ref|NP_110069.1| HAD superfamily hydrolase/phosphatase [Mycoplasma pneumoniae M129] (292 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072930.1| hypothetical protein MG263 [Mycoplasma genitali... 403 e-115 ref|NP_072932.1| hypothetical protein MG265 [Mycoplasma genitali... 69 5e-014 >ref|NP_072930.1| hypothetical protein MG263 [Mycoplasma genitalium G-37] Length = 291 Score = 403 bits (1036), Expect = e-115, Method: Compositional matrix adjust. Identities = 193/292 (66%), Positives = 235/292 (80%), Gaps = 1/292 (0%) Query: 1 MKNKIKYVYSDLDGTIVSWNPKNQFTHQGKTYKNLHEVSHATVTAFKQLQAQGIKIGIVT 60 MKN+IKY+YSDLDGTIVSWNPK +F +Q K+YKN HEVS AT++AF +LQ +GIK+GIVT Sbjct: 1 MKNEIKYLYSDLDGTIVSWNPKTEFVYQNKSYKNFHEVSDATISAFYRLQQKGIKVGIVT 60 Query: 61 GRDYCRVRWLEKYLNTDLPTITLDGAIIYFRDEIIRQEVLDKEFIHGINQIVKRYPTAAF 120 GRDYCRV WLEK L T LPTITLDGAII++++EI+ Q LD FI GIN IVKR+P AA+ Sbjct: 61 GRDYCRVLWLEKQLRTGLPTITLDGAIIFYQNEILSQTYLDDRFIEGINNIVKRFPEAAY 120 Query: 121 KLNMGWGNYYTCNPSLIFEGDHAYREHFNADSKFYRKEIDNTVDWDINNMKVNQVYFDTF 180 KLN GW +Y+T NPS+IFE D+A+ +FN ++K +K ID+T +WD+N +KVNQVYFD Sbjct: 121 KLNSGWISYFTKNPSVIFEIDYAFLGYFNPNTKLQKKFIDSTENWDLNKLKVNQVYFDID 180 Query: 181 TCPEPMIQELDNLVEKSDVTAKSYRHSLYIIKKGVSKASALQNLQRDFLVEMKPANTIVF 240 TCP M +E+ L+ SDV AK Y HS+YIIK GVSKASALQ+L + F + + NTIV Sbjct: 181 TCPLAMQKEIIELISVSDVNAKIYEHSMYIIKNGVSKASALQSLNQ-FAIPITKDNTIVC 239 Query: 241 GDGDNDIEMMQWADHSVSLTGSDPECYKLAKYHTDSVDDDGIAKWINKNLLC 292 GDGDNDIEMMQWA HSVSL GS+P+C+ LAKYHTDSVD+DGIA WI KNLLC Sbjct: 240 GDGDNDIEMMQWAKHSVSLIGSNPKCFALAKYHTDSVDNDGIANWIEKNLLC 291 >ref|NP_072932.1| hypothetical protein MG265 [Mycoplasma genitalium G-37] Length = 278 Score = 68.9 bits (167), Expect = 5e-014, Method: Compositional matrix adjust. Identities = 69/288 (23%), Positives = 132/288 (45%), Gaps = 45/288 (15%) Query: 4 KIKYVYSDLDGTIVSWN--PKNQFTHQGKTYKNLHEVSHATVTAFKQLQAQGIKIGIVTG 61 ++K + DLDGT++S N P Q TV K LQ +GI+I +G Sbjct: 2 ELKNIIFDLDGTLLSSNQIPLEQ-----------------TVEFLKDLQKKGIRITFASG 44 Query: 62 RDYCRVRWLEKYLNTDLPTITLDGAIIY-FRDE-IIRQEVLDKEFIHGINQIVKRYPTAA 119 R + +R ++ +LP I+ +GA++Y F E + + +D + I I Q++ + Sbjct: 45 RSHILIRNTATFITPNLPVISSNGALVYDFASEKPVHIKPIDNKVIPAIMQMLLEFQETF 104 Query: 120 FKLNMGWGNYYTCNPSLIFEGDHAYREHFNADSK----------FYRKEIDNTVDWDINN 169 + +YT F + + + S+ + + + +D+D Sbjct: 105 Y--------FYTDKKVFAFTHELDSAKILSTRSQIVGIDLIENNYIVNKFEKALDFDFKQ 156 Query: 170 MKVNQVYFDTFTCPE-PMI-QELDNLVEKSDVTAKSYRHSLYIIKKGVSKASALQNLQRD 227 + ++ T + P + ++LD + + + V++ ++ +L I++K V+KA L+ L + Sbjct: 157 HTITKILLVTKNREKVPFLAKQLDQIQDINYVSSMTF--ALDIMQKDVNKAYGLKVLVDN 214 Query: 228 FLVEMKPANTIVFGDGDNDIEMMQWADHSVSLTGSDPECYKLAKYHTD 275 + + P T+VFGD DND+E+ Q V+L K AK+ T+ Sbjct: 215 Y--NLDPEKTMVFGDADNDVEIFQSVKWPVALVNGTDLAKKNAKFITE 260 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508121|ref|NP_110070.1| hypothetical protein MPN382 [Mycoplasma pneumoniae M129] (200 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072931.1| hypothetical protein MG264 [Mycoplasma genitali... 177 6e-047 >ref|NP_072931.1| hypothetical protein MG264 [Mycoplasma genitalium G-37] Length = 198 Score = 177 bits (449), Expect = 6e-047, Method: Compositional matrix adjust. Identities = 87/192 (45%), Positives = 122/192 (63%), Gaps = 1/192 (0%) Query: 1 MLIXXXXXXXXXXXXXLQYIADYFHFPVFFADRFIHQQYANGQAGYAIVKQQFGAQFVNH 60 MLI LQY+ D +HF VF+AD FIH+QY GY ++ FG +FVN Sbjct: 1 MLIAIVGKPGVGKTSLLQYLKDNYHFSVFYADSFIHEQYQKNNPGYQLIMDHFGKEFVNQ 60 Query: 61 EAVDRKQLAQYVFNQPDELKRLSNLTKPLVQEWLNQLKAQFQDKIALVEIAVMLNYWNDY 120 VDRK+LA YVF+ +++LS +TKPL+ W+ LK QFQ K+AL+EIAVMLNYWN+Y Sbjct: 61 TEVDRKKLANYVFSDDKLIEKLSLVTKPLLIAWIKSLKTQFQKKLALIEIAVMLNYWNEY 120 Query: 121 RPFFDEVIQIERDAKIVKQALKARGVDVEQVQKLIADPTYPILTVINNSTVAECALHVTQ 180 R FD VI++ERD ++V AL+ R ++V+ LI +P I T+ NN ++A AL + + Sbjct: 121 RSLFDYVIKLERDDQLVNLALQQRNSH-KKVKDLIKEPNCKIDTIFNNDSIATAALKLIK 179 Query: 181 FLESIAKSDKCH 192 LE+ + +KC Sbjct: 180 LLETFLERNKCR 191 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508122|ref|NP_110071.1| HAD superfamily hydrolase/phosphatase [Mycoplasma pneumoniae M129] (282 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072932.1| hypothetical protein MG265 [Mycoplasma genitali... 330 1e-092 >ref|NP_072932.1| hypothetical protein MG265 [Mycoplasma genitalium G-37] Length = 278 Score = 330 bits (845), Expect = 1e-092, Method: Compositional matrix adjust. Identities = 160/276 (57%), Positives = 210/276 (76%), Gaps = 1/276 (0%) Query: 4 KVQNLIFDLDGTLLSWGHEPLPQTVTFLKELQKQGFKITFATGRSHILIRNTTQFIQPDL 63 +++N+IFDLDGTLLS PL QTV FLK+LQK+G +ITFA+GRSHILIRNT FI P+L Sbjct: 2 ELKNIIFDLDGTLLSSNQIPLEQTVEFLKDLQKKGIRITFASGRSHILIRNTATFITPNL 61 Query: 64 PVISSNGALIYDFAREKALHMTQLAPQSVVPIMRLLLQLEESFCIYTDKKVFGFEKPGIP 123 PVISSNGAL+YDFA EK +H+ + + + IM++LL+ +E+F YTDKKVF F + Sbjct: 62 PVISSNGALVYDFASEKPVHIKPIDNKVIPAIMQMLLEFQETFYFYTDKKVFAFTHE-LD 120 Query: 124 CKRLRTTQSKIVEPDITQNNFTINPLTDASKFDFATQNITKILLITEDRGRISKITKHLD 183 ++ +T+S+IV D+ +NN+ +N A FDF ITKILL+T++R ++ + K LD Sbjct: 121 SAKILSTRSQIVGIDLIENNYIVNKFEKALDFDFKQHTITKILLVTKNREKVPFLAKQLD 180 Query: 184 AIENISYVSSMTFALDIMHKDVNKAYGLKALEQQTGLDPQMTMVFGDGDNDVEIFNAVKY 243 I++I+YVSSMTFALDIM KDVNKAYGLK L LDP+ TMVFGD DNDVEIF +VK+ Sbjct: 181 QIQDINYVSSMTFALDIMQKDVNKAYGLKVLVDNYNLDPEKTMVFGDADNDVEIFQSVKW 240 Query: 244 SVAMANGSDLAKQNATFISEFDNDHDGIYHFLQCFL 279 VA+ NG+DLAK+NA FI+E+DN+H+GIY FL+ FL Sbjct: 241 PVALVNGTDLAKKNAKFITEYDNNHNGIYFFLKKFL 276 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508123|ref|NP_110072.1| leucyl-tRNA synthetase [Mycoplasma pneumoniae M129] (793 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycoplasma genit... 1200 0.0 ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycoplasma genita... 78 4e-016 >ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycoplasma genitalium G-37] Length = 792 Score = 1200 bits (3105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/791 (71%), Positives = 656/791 (82%) Query: 1 MYNHNLLEEKWLQLWKTKQVNRFFDDKTKPKYYILDMFPYPSAAGLHLGHVRAYTITDVL 60 MYNHNL+EEKWL+ WK K VNRF D K KYY+LDMFPYPSAAGLHLGHVRAYTITDV+ Sbjct: 1 MYNHNLIEEKWLKKWKNKDVNRFESDSNKKKYYVLDMFPYPSAAGLHLGHVRAYTITDVI 60 Query: 61 SRYHKAKGFNVIHPIGFDAFGLPAEQYAIASNKHPGDWTDKNITNFIEQLTAFGFDYDYQ 120 SRY+KAKGFNVIHPIGFDAFGLPAEQYAI SN++PG WTD+NI NFI QLT+FGFDYDY Sbjct: 61 SRYYKAKGFNVIHPIGFDAFGLPAEQYAINSNQNPGSWTDQNINNFINQLTSFGFDYDYH 120 Query: 121 LSLKTTDPRYYQYTQWIFGQLFEAGLAEVKEIDVNWCAELGTVLANEEVLIDSNGNAVSE 180 LSLKTTDPRYY+YTQWIF +LF+A LAE+ +IDVNWC +LGTVLANEEVLIDSNGNAVSE Sbjct: 121 LSLKTTDPRYYKYTQWIFSELFKANLAELVDIDVNWCEQLGTVLANEEVLIDSNGNAVSE 180 Query: 181 RGEFPVTKRKMKQWVLKITAFAESLLNGLAELDWHQSIKEMQTNWIGKSEGVEVTFDIEN 240 RG F V KRKMKQWVLKIT FA++LL GL LDW + IKEMQ NWIGKS+GV + F +++ Sbjct: 181 RGSFSVEKRKMKQWVLKITTFADALLEGLDTLDWPEPIKEMQRNWIGKSKGVTINFQLKD 240 Query: 241 SKETITIFTTKVQTIFGVTFLALSNSHPLVKEVAKTNPKIAQFLXXXXXXXXXXXXPETL 300 KE I IFTTK QTIFGV+FLA+S +H L K++A+TN K+A FL TL Sbjct: 241 HKEAIAIFTTKPQTIFGVSFLAVSTNHWLAKKIAETNKKVASFLKKQLQKTTTLKQKATL 300 Query: 301 HDGVDLKLKAINPATNTAIPLYVANYVVEGYGTDAVMGVPAHNENDNFFARKQKLPIITV 360 +DG+DL AI+P TN IP+YVANYV+EGYGTDA+MGV AHNENDNFFARKQKL II V Sbjct: 301 YDGIDLLTNAIHPLTNELIPVYVANYVIEGYGTDAIMGVGAHNENDNFFARKQKLKIINV 360 Query: 361 IDKQERLQHSGQFSGLNSQTANTQITQMLVERQKAKKTTVYKLRDWIFSRQRYWGEPFPI 420 IDK+ERLQ+S ++GL ++ A IT L+ + KAK TTVYKLRDWIFSRQRYWGEPFPI Sbjct: 361 IDKKERLQNSFAYNGLTTKEAQVAITNELISQNKAKLTTVYKLRDWIFSRQRYWGEPFPI 420 Query: 421 LFDENNQPHLVKELPVTLPALANYQPDGSTNPPLWRNQEWAKVKQGNQTFTRETSTMPQW 480 +FDENN PHLV++LPV LP L NY+PDGS N PL RNQ W + + N + RET+TMPQW Sbjct: 421 IFDENNTPHLVEQLPVELPLLENYKPDGSGNSPLMRNQAWVNIVKDNIHYQRETNTMPQW 480 Query: 481 AGSCWYYLGYLMLINNENFWPIDSREAKDLFERYLPVDLYVGGAEHAVLHLLYARFWHQF 540 AGSCWYYLGYLMLI N NFWPIDS+EAK LF++YLPVDLYVGGAEHAVLHLLYARFWH+F Sbjct: 481 AGSCWYYLGYLMLIKNPNFWPIDSKEAKKLFDQYLPVDLYVGGAEHAVLHLLYARFWHKF 540 Query: 541 LYQKGIVTTKEPFKKLINQGMVLGPDGKKMSKSKGNTINPTPLIDSHGADALRLYLMFMG 600 L+ K +V+TKEPF+KLINQGMVLGPDGKKMSKSKGNTINPTPL+DSHGADALRLYLMFMG Sbjct: 541 LFDKKLVSTKEPFQKLINQGMVLGPDGKKMSKSKGNTINPTPLVDSHGADALRLYLMFMG 600 Query: 601 PISAALTWLDDGLNGMRRWLDRVHNFFHKENIIKETVDQETVYGYNLFLKRSFEHLEKQE 660 PISA+LTW D+GLNGMRRWLDRV+NFF ++ + V QET++ YNLFLK S+ HL+K E Sbjct: 601 PISASLTWNDEGLNGMRRWLDRVYNFFFNHAVVTDQVSQETIFAYNLFLKNSYCHLDKHE 660 Query: 661 LNLVISQMMIFLNLLYKTKQLTLAYAKGFLTVLSFFAPYLAEELNAKLGMEPFIVHAQLP 720 LNLVIS+MMIFLN LYKTK+++L YAKGFLTVLSFFAP+LAEELN K G+EPF+V + Sbjct: 661 LNLVISEMMIFLNFLYKTKKISLNYAKGFLTVLSFFAPFLAEELNEKCGLEPFVVKQAIS 720 Query: 721 NVDNSVLETDKVKIILSVNGRFKGTKEFAKGVDEQTVLKAFKTDPEFQALFDQPLARVVF 780 VD + ET K K+ILS+NG+FK KEF KG E VL++FK D E + +QP+ RVV+ Sbjct: 721 LVDYQLFETAKTKVILSINGKFKAAKEFTKGSLEIDVLESFKQDKEINDILNQPIERVVY 780 Query: 781 VPNRIINVLLK 791 V +RIINVLLK Sbjct: 781 VQDRIINVLLK 791 >ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycoplasma genitalium G-37] Length = 837 Score = 77.8 bits (190), Expect = 4e-016, Method: Compositional matrix adjust. Identities = 121/533 (22%), Positives = 194/533 (36%), Gaps = 133/533 (24%) Query: 310 AINPATNTAIPLYVANYVVEGYGTDAVMGVPAHNENDNFFARKQKLPIITVIDKQERL-Q 368 +NP T IP+ +YV +GT + PAH+ ND K K ++ ID L Q Sbjct: 248 VVNPLTGKQIPVVTDSYVDIKFGTGILKCTPAHDFNDYEINTKYKFDFLSCIDSNGILNQ 307 Query: 369 HSGQFSGLN------------------------------SQTANTQITQMLVER------ 392 ++ +F GL+ S+ + T + ML ++ Sbjct: 308 NASKFQGLSVLQARNKIVKWLEKNKLLVKSIPLTSNVGFSERSGTVVEPMLSKQWFVDLP 367 Query: 393 -------------------QKAKKTTVYKLRDWIFSRQRYWGEPFPILFDENNQPHLVKE 433 K + KL+ W SRQ WG P+ F+ N +V E Sbjct: 368 KLKDHLYLKKYPDFIPKRFNKQVSNWLNKLKPWCISRQLIWGHKIPVWFENNTGEIVVGE 427 Query: 434 LPVTLPALANYQPDGSTNPPLWRNQEWAKVKQGNQTFTRETSTMPQWAGSCWYYLGYLML 493 P + Q +TR + W S Sbjct: 428 KP----------------------------SKNLQNYTRSKDVLDTWFSS---------- 449 Query: 494 INNENFWPIDSR--EAKDLFERYLPVDLYVGGAE---HAVLHLLYARFWHQFLYQKGIVT 548 + WP+ E D F +L V G + VL +L+ F+ T Sbjct: 450 ----SLWPLICLNWEQDDSFHE---TELLVTGYDILFFWVLRMLFNSFFE---------T 493 Query: 549 TKEPFKKLINQGMVLGPDGKKMSKSKGNTINPTPLIDSHGADALRLYLMFMGPISAALTW 608 K PFK ++ G+V +KMSKS N I+P LI ++GADA+RL+L L + Sbjct: 494 KKLPFKTVLIHGLVRDEQNRKMSKSLNNGIDPVDLIRNYGADAVRLFLCSNHTPGDDLIF 553 Query: 609 LDDGLNGMRRWLDRVHNFFHKENIIKETVDQETVYGYNLFLKRSFEHLEKQELNLVISQM 668 + + +L+++ N + +I+ DQE Y + L K L+ VI ++ Sbjct: 554 SEQKIKSAWNFLNKLWNV--TKFVIQLENDQEISYDLDKLSLSETWILAK--LDKVIQKI 609 Query: 669 MIFLNLLYKTKQLTLAYAKGFLTVLSFFAPYLAEELNAKLGMEPFIVHAQLPNVDNSVLE 728 L+ + LA A L + F + EP + QL SVL Sbjct: 610 TKLLD------KFQLALANQIL--VKFVWDDFCNTFIEAIKKEPNQLKPQLFYTAKSVLS 661 Query: 729 TDKVKIILSVNGRFKGTKEFAKGVDEQTVLKA---FKTDPEFQALFDQPLARV 778 + I+LS+ F + + + + ++V++A T + LFD LA + Sbjct: 662 N--IAILLSITVPFLSERIYQQ-FNNKSVMQATWPLATKIKIPKLFDLVLAAI 711 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508124|ref|NP_110073.1| hypothetical protein MPN385 [Mycoplasma pneumoniae M129] (114 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072934.1| hypothetical protein MG267 [Mycoplasma genitali... 129 6e-033 >ref|NP_072934.1| hypothetical protein MG267 [Mycoplasma genitalium G-37] Length = 115 Score = 129 bits (325), Expect = 6e-033, Method: Compositional matrix adjust. Identities = 62/113 (54%), Positives = 75/113 (66%) Query: 2 LLKRLIKXXXXXXXXXXXXXXXXXSFWLNTYNTKEWANLLAEKDASGLIVQIIPNINQWF 61 LL +L+K SFWLNTY T +WA+LLA DASG+I+ I PNIN WF Sbjct: 3 LLFKLVKIAILVFLMVIGFFIFIGSFWLNTYQTAQWADLLASSDASGIILTIFPNINSWF 62 Query: 62 KGTVEQQQKLFQTLVHFFIPVGFGLLFGIAVAIIADLFYHLIKYLIKRSFKKN 114 TV Q LF+T+VHFFIPVGFGLLFG+ +AII D+ Y L KY IKRS++ N Sbjct: 63 NATVANQPVLFKTMVHFFIPVGFGLLFGLIIAIIVDILYRLTKYAIKRSYQSN 115 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508125|ref|NP_110074.1| DEOXYGUANOSINE KINASE/ DEOXYADENOSINE KINASE [Mycoplasma pneumoniae M129] (229 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072935.1| hypothetical protein MG268 [Mycoplasma genitali... 297 5e-083 >ref|NP_072935.1| hypothetical protein MG268 [Mycoplasma genitalium G-37] Length = 228 Score = 297 bits (761), Expect = 5e-083, Method: Compositional matrix adjust. Identities = 137/224 (61%), Positives = 172/224 (76%) Query: 6 KPKFQPAKIANAVVVGGMIAFGKTTIAESLAKHLKGSKVIYXXXXXXXXXXXXXXKMYER 65 KP FQP KIAN +V+GGMIA GKTTIA +LA H++ +KV+ KMYER Sbjct: 5 KPHFQPNKIANCIVIGGMIALGKTTIANTLANHIQAAKVVCELETNDQLVELLLAKMYER 64 Query: 66 NDELLYAPLFQLYFTLNRFNKYRKECNNKTPTIFDRSIFEDWLFAKQNIHRPSIFTYYNH 125 +DELLY+PLFQLYFTLNRF KY+ CN PTIFDRSIFEDWLFAK NI RP++F+YYN Sbjct: 65 SDELLYSPLFQLYFTLNRFGKYQNNCNTINPTIFDRSIFEDWLFAKHNIIRPAVFSYYNQ 124 Query: 126 LWNGIVKELIFKHGIPALYVILEGDWELFEQRLFQRNRKVEIDNFAKNKDYFKNLYKIYG 185 LWN + KEL+ KHG+P LYVIL+GDW+LFE+RLF RNRKVEIDNF KN+ YF+NL+++Y Sbjct: 125 LWNRLAKELVNKHGVPNLYVILDGDWKLFEKRLFMRNRKVEIDNFTKNQLYFQNLHRVYT 184 Query: 186 EFIKNVCYDFGISHCIVNANQSVESITKQVLEVLKSKNLDWEII 229 F++ VC DFGI++CI++A + +I K +LE LK + LDW+ I Sbjct: 185 GFMEAVCNDFGINYCIIDAKLPIVTIIKMILEKLKLQKLDWKFI 228 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508126|ref|NP_110075.1| hypothetical protein MPN387 [Mycoplasma pneumoniae M129] (358 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072936.1| hypothetical protein MG269 [Mycoplasma genitali... 311 7e-087 >ref|NP_072936.1| hypothetical protein MG269 [Mycoplasma genitalium G-37] Length = 340 Score = 311 bits (797), Expect = 7e-087, Method: Compositional matrix adjust. Identities = 175/359 (48%), Positives = 237/359 (66%), Gaps = 20/359 (5%) Query: 1 MTNFEYYRDFDDFQRRETINFFLSKFPLASQKQLQDFLEQARQAYVQLRQTNPAHLDWNQ 60 M NF+YYRDFDDFQRRETINFFL+KFP AS+ QL FLEQA+ AYV+LR +NP ++DWNQ Sbjct: 1 MNNFDYYRDFDDFQRRETINFFLAKFPFASKAQLDVFLEQAKTAYVKLRTSNPKNVDWNQ 60 Query: 61 TLLYLAQKFLPEKQSEKDRLKKILVLQEQLKVRYEGEIKRQSQQNSELLIQLGQRDEEII 120 L+ L +KF PE +SEK+RLK+IL LQEQLKVR EGEI RQ QQNSEL QL Q + EII Sbjct: 61 MLVLLLKKFGPEARSEKERLKRILSLQEQLKVRLEGEINRQVQQNSELFSQLKQSESEII 120 Query: 121 QMQQLFKEKERQLEVYQKQLNEAKEYNHKL-EEHYNKTLEEALKEYEQQCTDAIHRRDEE 179 QMQQL + KE Q+E KQL+ KE N KL EEH + +EE LKEYE QC +AI++RD+ Sbjct: 121 QMQQLVEAKEHQIEALNKQLHAIKEANKKLIEEHESINVEELLKEYEVQCNEAIYKRDQH 180 Query: 180 IQAIFTSKLNEKNSEITQLQTYLQSAVDENEALQKQHKLVLFKNQKYEKMVSDLQVDLAR 239 IQ +F KL K+ EI++ Q+ L++A E +AL+K +KLV+ QK++K+ +++++D + Sbjct: 181 IQTVFEDKLALKDGEISETQSLLKTAEKEKQALKKAYKLVVNSLQKHQKLTTEIEIDFTK 240 Query: 240 IQEINNSLTSEKRDFQRANNDLVKQYNKLKNRLEQKLGEITNAQVNGQTHTVSLADTSQQ 299 + EI ++ E ++ + + +KQ+ K K +L +K+ EIT D S Sbjct: 241 LDEIIATIFDETKNPKTGFTNFIKQFEKTKAKLTKKIAEITK------------LDHSTP 288 Query: 300 FHRPQEAVIPQTQVISYTLXXXXXXXEVEETPPTTNKDLPRGATQPKRNSIKRVSKLID 358 + QE Q Q+ ++ + + + LPRG TQPK NSI RVSKLID Sbjct: 289 TNYQQETPASQQQL-------DQENEPIKPSKKSNSSSLPRGTTQPKSNSINRVSKLID 340 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508127|ref|NP_110076.1| hypothetical protein MPN388 [Mycoplasma pneumoniae M129] (42 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508128|ref|NP_110077.1| lipoate protein ligase [Mycoplasma pneumoniae M129] (339 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072937.1| lipoate protein ligase (lplA) [Mycoplasma genit... 543 e-156 >ref|NP_072937.1| lipoate protein ligase (lplA) [Mycoplasma genitalium G-37] Length = 336 Score = 543 bits (1398), Expect = e-156, Method: Compositional matrix adjust. Identities = 255/336 (75%), Positives = 297/336 (88%) Query: 1 MKTYILTSPKNIPYFNAALEEWLLTEFKKGEEIKVIYFWQNANTIVVGRNQNTYAEVNLS 60 M+T+I+TSP PYFNAALEEWLLTEF+K E +KVIYFWQNANTIVVGRNQNTYAEVNL Sbjct: 1 MQTFIITSPVFNPYFNAALEEWLLTEFRKNELVKVIYFWQNANTIVVGRNQNTYAEVNLK 60 Query: 61 EVEKDKVNLFRRFSGGGAVFHDMGNICFSIILPKAKKEMENAYEETTRNVVKFLNSVGVP 120 E+E DKVNLFRRFSGGGAVFHD+GNICFSIILP+ K MENAYE+TTRNVVKFLNS+ VP Sbjct: 61 ELESDKVNLFRRFSGGGAVFHDLGNICFSIILPRTGKVMENAYEQTTRNVVKFLNSLNVP 120 Query: 121 AQFHGRNDLEIEGKKFSGLAEYLSKDRVLVHGTLLFDTDFTKLAKYLNVDKTKMVSKGIE 180 A FHGRNDLEI KKFSGLAEY++KDR+LVHGTLLFDTDF+KLAKYLNVDKTK+ SKG++ Sbjct: 121 AVFHGRNDLEINNKKFSGLAEYIAKDRLLVHGTLLFDTDFSKLAKYLNVDKTKIASKGVD 180 Query: 181 SVQKRVVNVKEYLPNLSTPTFLEKMVQFFTETEHAETIHLDESSIKMVEKRAQEHFQSWD 240 SV KRVVNVKEYLPN +T FLE+M+ FFT TE AETI L + ++ VEKRA+EHFQSW+ Sbjct: 181 SVAKRVVNVKEYLPNWTTAKFLEEMINFFTVTEKAETIVLTKDALAKVEKRAKEHFQSWE 240 Query: 241 WNFGKTADYNFKNKKRFEGAGIFECNVQVDQGKVVDIKFYGDFLSVIDITPVTQQLVGQK 300 WNFGKT +YNFKNK+ F AG+FECNVQV++G VVDIKFYGDFLSV+DITPVT++L+GQK Sbjct: 241 WNFGKTYEYNFKNKRYFNNAGLFECNVQVEKGTVVDIKFYGDFLSVVDITPVTKKLIGQK 300 Query: 301 YDYQTFAKILGNIDNFKEYFGTLTPQQMLEVIFDNK 336 YDY+TF K+ +D+F +YFG+L P+Q+L VIFDNK Sbjct: 301 YDYKTFEKLFNELDHFSDYFGSLKPEQLLGVIFDNK 336 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508129|ref|NP_110078.1| dihydrolipoamide dehydrogenase [Mycoplasma pneumoniae M129] (457 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072938.1| dihydrolipoamide dehydrogenase (pdhD) [Mycoplas... 656 0.0 >ref|NP_072938.1| dihydrolipoamide dehydrogenase (pdhD) [Mycoplasma genitalium G-37] Length = 457 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/456 (68%), Positives = 377/456 (82%) Query: 1 MNYDLIIIGAGPAGYVAAEYAGKHKLKTLVVEKEYFGGVCLNVGCIPTKTLLKRAKIVDY 60 M+YDLII+GAGPAGY+AAEYAGKHKLKTLV+EK+YFGGVCLNVGCIPTKTLLKRAKI+DY Sbjct: 1 MDYDLIILGAGPAGYIAAEYAGKHKLKTLVIEKQYFGGVCLNVGCIPTKTLLKRAKIIDY 60 Query: 61 LRHAQDYGISINGQVALNWNQLLEQXXXXXXXXXXXXXAIIASAKAETVMGEAKVLDPNT 120 L HA+DYGI+INGQ L+W QLL+Q II AK E++ GEA V+D N Sbjct: 61 LVHAKDYGITINGQAKLDWKQLLKQKQEVVDKLVAGVKTIIKGAKVESIEGEATVIDKNK 120 Query: 121 VEVAGKTYTTKSIVVATGSRPRYLTLPGFAEARQNGFVIDSTQALSLEGVPRKLXXXXXX 180 V+V TYTT +I+VATGSRPRYLTLPGF +A+Q GF+IDSTQAL+LEGVP+K Sbjct: 121 VQVNNTTYTTNNIIVATGSRPRYLTLPGFEKAQQAGFIIDSTQALALEGVPKKFVVVGGG 180 Query: 181 XXXXEFAFLYASLGSEVTILQGVDRILEIFDTEVSDLVAKLLQTKNVKIITNAQVTRANN 240 EFAFL+ASLGSEVTI+QGVDRILE+ D++VS+L++K L+ K V+IITNA V RA N Sbjct: 181 VIGVEFAFLFASLGSEVTIIQGVDRILEVCDSDVSELISKTLKNKGVQIITNAHVVRAEN 240 Query: 241 NEVFYSQNGQEGSVVGDRILVSIGRIPNTECLDGLNLQRDERNRIVLNQDLQTSIPNIYI 300 N++FY+ NG E SV+GD+ILVSIGRI NTECLD L+L+RD N+IVLN+ LQTS NIY+ Sbjct: 241 NQLFYTVNGVEQSVIGDKILVSIGRIANTECLDQLDLKRDHNNKIVLNEKLQTSTTNIYL 300 Query: 301 VGDANAQLMLAHFAYQQGRYAVNHILNKKQVKPAQKLTCPSCIYTNPEVASVGYTEMELK 360 +GD N Q+MLAH+AYQQGRYAV+ ILN+ QVKPA+K CP+CIYTNPEVA VGY+EMEL+ Sbjct: 301 IGDVNTQMMLAHYAYQQGRYAVDQILNQNQVKPAEKNKCPACIYTNPEVAFVGYSEMELQ 360 Query: 361 KQGIPYVKTNLVLAHCGKAIADNETNGFVKMMFDPQTGKILGCCIIAATASDMIAELALA 420 K+ I YVK++L + GKAIAD+ETNGFVKMMF+P+TG ILG CIIA+TASD+IAELAL Sbjct: 361 KEKIDYVKSSLPFIYSGKAIADHETNGFVKMMFNPKTGAILGGCIIASTASDIIAELALV 420 Query: 421 MGAGLTVFDIANSISPHPTINEMIADVCKKALFDHF 456 M LTVFDIANSISPHPT+NEM+ DVCKKA+FD+F Sbjct: 421 MENNLTVFDIANSISPHPTMNEMVTDVCKKAIFDYF 456 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508130|ref|NP_110079.1| dihydrolipoamide acetyltransferase component (E2) [Mycoplasma pneumoniae M129] (402 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072939.1| dihydrolipoamide acetyltransferase (pdhC) [Myco... 512 e-147 >ref|NP_072939.1| dihydrolipoamide acetyltransferase (pdhC) [Mycoplasma genitalium G-37] Length = 384 Score = 512 bits (1318), Expect = e-147, Method: Compositional matrix adjust. Identities = 268/402 (66%), Positives = 297/402 (73%), Gaps = 18/402 (4%) Query: 1 MANEFKFTDVGEGLHEGKVTEILKKVGDTIKVDEALFVVETDKVTTELPSPYAGVITAIT 60 MANEFKFTDVGEGLHEGKVTEILK+VGD IK+DEALFVVETDKVTTELPSP+AG I+AI Sbjct: 1 MANEFKFTDVGEGLHEGKVTEILKQVGDQIKIDEALFVVETDKVTTELPSPFAGTISAIN 60 Query: 61 TNVGDVVHIGQVMAVIDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120 VGDVV IGQVMAVI + Sbjct: 61 VKVGDVVSIGQVMAVIGEKTSTPLVEPKPQPTEEVAKVKEAGASVVGE------------ 108 Query: 121 XXXXXIKVSNSVFPIFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEETIAITTM 180 IKVS+++FPIFG ++TIAI+TM Sbjct: 109 -----IKVSDNLFPIFGVKPHATPAVKDTKVASSTNITVETTQKPESKTE-QKTIAISTM 162 Query: 181 RKAIAEAMVKSHENIPATILTFYVNATKLKQYRESVNGLALSKYNMKISFFAFFVKAIVN 240 RKAIAEAM KSH IP T+LTFYVNATKLKQYRESVNG ALSKY+MKIS+FAFFVKAIVN Sbjct: 163 RKAIAEAMTKSHAIIPTTVLTFYVNATKLKQYRESVNGYALSKYSMKISYFAFFVKAIVN 222 Query: 241 ALKKFPVFNGRYDKERNLIVLNKDVNVGIAVDTPDGLIVPNIKQAQTKSVVDIAKDIVDL 300 ALKKFPVFN YD ++N IVLN D+NVGIAVDT +GLIVPNIKQAQTKSVV+IA+ IVDL Sbjct: 223 ALKKFPVFNASYDPDQNEIVLNDDINVGIAVDTEEGLIVPNIKQAQTKSVVEIAQAIVDL 282 Query: 301 ANRARSKQIKLPDLSKGTISVTNFGSLGAAFGTPIIKHPEMCIVATGNMEERVVRAEGGV 360 AN+AR+K+IKL DL+KGTISVTNFGSLGAA GTPIIK+PEMCIVATGN+EER+V+ E G+ Sbjct: 283 ANKARTKKIKLTDLNKGTISVTNFGSLGAAVGTPIIKYPEMCIVATGNLEERIVKVENGI 342 Query: 361 AVHTILPLTIAADHRWVDGADVGRFGKEIAKQIEELIDLEVA 402 AVHTILPLTIAADHRWVDGADVGRFGKEIAKQIEELIDL VA Sbjct: 343 AVHTILPLTIAADHRWVDGADVGRFGKEIAKQIEELIDLTVA 384 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508131|ref|NP_110080.1| pyruvate dehydrogenase E1-beta subunit [Mycoplasma pneumoniae M129] (327 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072940.1| pyruvate dehydrogenase component E1, subunit be... 575 e-166 >ref|NP_072940.1| pyruvate dehydrogenase component E1, subunit beta (pdhB) [Mycoplasma genitalium G-37] Length = 326 Score = 575 bits (1481), Expect = e-166, Method: Compositional matrix adjust. Identities = 276/327 (84%), Positives = 294/327 (89%), Gaps = 1/327 (0%) Query: 1 MSKTIQANNIEALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCP 60 MSK IQ NNIEAL NAMDLALERD NVVLYGQDAGFEGGVFRATKGLQ+KYG ERVWDCP Sbjct: 1 MSK-IQVNNIEALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCP 59 Query: 61 XXXXXXXXXXXXXXXXXLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCPIIVRM 120 LKPIVEIQFSGFSFPAMFQIF HAARIRNRSRGVYT P++VRM Sbjct: 60 IAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPLVVRM 119 Query: 121 PMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLY 180 PMGGGIKALEHHSETLEAIY QIAGLKTVMPSNPYDTKGLFLAA+ESPDPV+FFEPKKLY Sbjct: 120 PMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLY 179 Query: 181 RAFRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGIELIDLR 240 RAFRQEIP+DYYTVPIG+ANLIS+G+ LTIVSYGPTMFDLIN+VY GELKDKGIELIDLR Sbjct: 180 RAFRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGIELIDLR 239 Query: 241 TISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDI 300 TISPWDK+TVFNSVKKTGRLLVVTEA K+FTTS EII SVTEELF+YLK APQRVTG+DI Sbjct: 240 TISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDI 299 Query: 301 VVPLARGEHYQFNLNARILEAVNQLLK 327 VVPLARGE YQF +NAR+++AVNQLLK Sbjct: 300 VVPLARGEKYQFEINARVIDAVNQLLK 326 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508132|ref|NP_110081.1| Pyruvate dehydrogenase [Mycoplasma pneumoniae M129] (358 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072941.1| pyruvate dehydrogenase component E1, subunit al... 672 0.0 >ref|NP_072941.1| pyruvate dehydrogenase component E1, subunit alpha (pdhA) [Mycoplasma genitalium G-37] Length = 358 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/358 (88%), Positives = 336/358 (93%) Query: 1 MAILIKNKVPTTLYQVYDNEGKLMDPNHKITLSNEQLKHAFYLMNLSRIMDKKMLVWQRA 60 MAILIKNKVPTTLYQVYDNEGKL+DPNHKITL++EQLKHA+YLMNLSR+MDKKMLVWQRA Sbjct: 1 MAILIKNKVPTTLYQVYDNEGKLIDPNHKITLTDEQLKHAYYLMNLSRMMDKKMLVWQRA 60 Query: 61 GKMLNFAPNLGEEALQVGMGMGLNENDWFCPTFRSGALMLYRGVKPEQLLLYWNGNENGS 120 GKMLNFAPNLGEEALQVGMG+GLNENDW CPTFRSGALMLYRGVKPEQLLLYWNGNE GS Sbjct: 61 GKMLNFAPNLGEEALQVGMGLGLNENDWVCPTFRSGALMLYRGVKPEQLLLYWNGNEKGS 120 Query: 121 KIEAKYKTLPINITIGAQYSHAAGLGYMLHYKKLPNVAVTMIGDGGTAEGEFYEAMNIAS 180 +I+AKYKTLPINITIGAQYSHAAGLGYMLHYKK PNVAVTMIGDGGTAEGEFYEAMNIAS Sbjct: 121 QIDAKYKTLPINITIGAQYSHAAGLGYMLHYKKQPNVAVTMIGDGGTAEGEFYEAMNIAS 180 Query: 181 IHKWNSVFCINNNQFAISTRTKLESAVSDLSTKAIAVNIPRIRVDGNDLIASYEAMHEAA 240 IHKWN+VFCINNNQFAISTRTKLESAVSDLS KAIA IPR+RVDGNDLIASYEAM +AA Sbjct: 181 IHKWNTVFCINNNQFAISTRTKLESAVSDLSVKAIACGIPRVRVDGNDLIASYEAMQDAA 240 Query: 241 NYARSGNGPVLIEFFSWRQGPHTTSDDPSIYRTKEEEAEAMKSDPVKRLRNFLFDRGILT 300 NYAR GNGPVLIEFFS+RQGPHTTSDDPSIYRTK+EE E MKSDPVKRLRNFLFDR IL Sbjct: 241 NYARGGNGPVLIEFFSYRQGPHTTSDDPSIYRTKQEEEEGMKSDPVKRLRNFLFDRSILN 300 Query: 301 PQQEEEMVAKIEQEVQAAYEVMVSKTPVTLDEVFDYNYEKLTPDLARQKAEAKKYFKD 358 QEEEM +KIEQE+QAAYE MV TPV++DEVFDYNY++LTP+L QK AKKYFKD Sbjct: 301 QAQEEEMFSKIEQEIQAAYEKMVLDTPVSVDEVFDYNYQELTPELVEQKQIAKKYFKD 358 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508133|ref|NP_110082.1| NADH oxidase [Mycoplasma pneumoniae M129] (479 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072942.1| NADH oxidase (nox) [Mycoplasma genitalium G-37] 838 0.0 >ref|NP_072942.1| NADH oxidase (nox) [Mycoplasma genitalium G-37] Length = 478 Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/477 (83%), Positives = 441/477 (92%) Query: 1 MKKVIVIGVNHAGTSFIRTLLSKSKDFQVNAYDRNTNISFLGCGIALAVSGVVKNTEDLF 60 MKKVIVIG+NHAGTSFIRTLLSKSKDF+VNAYDRNTNISFLGCGIALAVSGVVKNT+DLF Sbjct: 1 MKKVIVIGINHAGTSFIRTLLSKSKDFKVNAYDRNTNISFLGCGIALAVSGVVKNTDDLF 60 Query: 61 YSTPEELKAMGANVFMAHDVVGLDLDKKQVIVKDLATGKETVDHYDQLVVASGAWPICMN 120 YS PEELK MGAN+FM+HDV +DL KKQV V+DL + KE D +DQLV+ASGAWPICMN Sbjct: 61 YSNPEELKQMGANIFMSHDVTNIDLIKKQVTVRDLTSNKEFTDQFDQLVIASGAWPICMN 120 Query: 121 VENEVTHTQLQFNHTDKYCGNIKNLISCKLYQHALTLIDSFRHDKSIKSVAIVGSGYIGL 180 VEN+VTH L+FN+TDKYCGN+KNLISCKLYQHALTLIDSFR DK+IKSVAIVGSGYIGL Sbjct: 121 VENKVTHKPLEFNYTDKYCGNVKNLISCKLYQHALTLIDSFRKDKTIKSVAIVGSGYIGL 180 Query: 181 ELAEAAWQCGKQVTVIDMLDKPAGNNFDEEFTNELEKAMKKAGINLMMGSAVKGFIVDAD 240 ELAEAAW C KQVTVID+LDKPAGNNFD EFT+ELEK M+K G+ LMMG +VKGF+VD+ Sbjct: 181 ELAEAAWLCKKQVTVIDLLDKPAGNNFDHEFTDELEKVMQKDGLKLMMGCSVKGFVVDST 240 Query: 241 KNVVKGVETDKGRVDADLVIQSIGFRPNTQFVPKDRQFEFNRNGSIKVNEYLQALNHENV 300 NVVKGVETDKG V+ADLV QSIGFRP+T+FVPKD+ FEF NGSIKVNE+LQALNH++V Sbjct: 241 NNVVKGVETDKGIVNADLVNQSIGFRPSTKFVPKDQNFEFIHNGSIKVNEFLQALNHKDV 300 Query: 301 YVIGGAAAIYDAASEQYENIDLATNAVKSGLVAAMHMIGSKAVKLESIVGTNALHVFGLN 360 YVIGG AAIY+AASEQYENIDLATNAVKSGLVAAMH+IGS VKL+SIVGTNALH+FGLN Sbjct: 301 YVIGGCAAIYNAASEQYENIDLATNAVKSGLVAAMHIIGSNQVKLQSIVGTNALHIFGLN 360 Query: 361 LAATGLTEKRAKMNGFDVGVSIVDDNDRPEFMGTFDKVRFKLIYDKKTLRLLGAQLLSWN 420 LAA GLTE+RAK GFDVG+S+VDDNDRPEFMG++DKVRFKL+YDKKTLR+LGAQLLSWN Sbjct: 361 LAACGLTEQRAKKLGFDVGISVVDDNDRPEFMGSYDKVRFKLVYDKKTLRILGAQLLSWN 420 Query: 421 TNHSEIIFYIALAVQKKMLISELGLVDVYFLPHYNKPFNFVLAAVLQALGFSYYTPK 477 TNHSEIIFYIALA+QK+ML++ELGLVDVYFLPHYNKPFNFVLA VLQALGFSYY PK Sbjct: 421 TNHSEIIFYIALAIQKQMLLTELGLVDVYFLPHYNKPFNFVLATVLQALGFSYYIPK 477 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508134|ref|NP_110083.1| adenine phosphoribosyltransferase [Mycoplasma pneumoniae M129] (177 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072943.1| adenine phosphoribosyltransferase [Mycoplasma g... 258 3e-071 >ref|NP_072943.1| adenine phosphoribosyltransferase [Mycoplasma genitalium G-37] Length = 180 Score = 258 bits (658), Expect = 3e-071, Method: Compositional matrix adjust. Identities = 123/180 (68%), Positives = 148/180 (82%), Gaps = 3/180 (1%) Query: 1 MKQKLQALDRAIKRFNDFPTPGILFYDITPIFLNSELFEFVLEQMAQFIQEVKADGIVCP 60 M Q + LD+AIKRF +FP G LFYDITP+F N +LF FVL QMAQFI+ + A+ IVCP Sbjct: 1 MDQNFKLLDQAIKRFENFPNQGTLFYDITPVFSNPQLFNFVLTQMAQFIKAINAEAIVCP 60 Query: 61 EARGFIFGGALASKTKLPLVLVRKPHKLSGELARETYDLEYRQNSILEMRVDAL---ENC 117 EARGFIFGGALASKT+LPLVLVRK +KL G+L +YDLEYR++++LEM +L N Sbjct: 61 EARGFIFGGALASKTQLPLVLVRKANKLPGQLISASYDLEYRKHAVLEMSTTSLIQANNA 120 Query: 118 KRCVIVDDLLATAGTVAAIDKLIARLGSQTVGYCFLIELQKLHGKAKLQPNVATKILLHY 177 KRCVIVDD+LATAGTVAAID+L+ +L +TVGYCFLIEL+KL+GKAKLQPNV +KILLHY Sbjct: 121 KRCVIVDDVLATAGTVAAIDQLLKQLNGETVGYCFLIELKKLNGKAKLQPNVVSKILLHY 180 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508135|ref|NP_110084.1| protein export, secD like [Mycoplasma pneumoniae M129] (971 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072944.1| hypothetical protein MG277 [Mycoplasma genitali... 1175 0.0 >ref|NP_072944.1| hypothetical protein MG277 [Mycoplasma genitalium G-37] Length = 970 Score = 1175 bits (3040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/979 (61%), Positives = 714/979 (72%), Gaps = 17/979 (1%) Query: 1 MGLKKRVSFDWLLKIGIILVLAFLGLFGIIFGSYKLLNDSRLGVVFNGSTTTTVYFLNHK 60 M KKR S DW+LKIG IL L LGLFG+IFGSYKLLNDSRLG VFNGSTTTTVYFLNHK Sbjct: 1 MRFKKRFSLDWILKIGTILGLVCLGLFGVIFGSYKLLNDSRLGAVFNGSTTTTVYFLNHK 60 Query: 61 SKDANKELDPTQKKDGNGSGNNTEMITDVNGFLNNIEKSYANSLYAQGFSSVNITKNSHD 120 S + N LDP Q K NG E IT+++ FL+ +EKSYANSL+ QGFSSVNITKN++D Sbjct: 61 STN-NTSLDPQQTKPTNG----IENITNIDSFLDGVEKSYANSLFIQGFSSVNITKNTND 115 Query: 121 TSAKELSDKGVFDSSWLVNDGLPSISVTFXXXXXXXXXXXXXXXIDAQVKRNALSAIEHN 180 +A EL + D SWLVN GLPS+++TF +DAQV+RNA+S++EHN Sbjct: 116 KTASELDN---IDKSWLVNGGLPSVTLTFEQNREQAKTRQRKRQVDAQVRRNAISSVEHN 172 Query: 181 YKLSLETTDGIVLFDSFDKEFIRNSLTAVVPQTTNTNSALTFEYKLSKNVITKESLHNDF 240 Y+LSLETTDG+VLFDS D FI S+ AVVPQ T+ NSALTFEYKL+KNV+TKESLH DF Sbjct: 173 YQLSLETTDGVVLFDSLDNNFINASIRAVVPQNTSVNSALTFEYKLNKNVVTKESLHTDF 232 Query: 241 LDFIKSKSLTDSDYNTGNGQKSVEGSGKWFKDKANGSAQNGNKTLVLWKDKEGAVQYVRN 300 LDFI SK+L+ SDYNTGNGQ SVEG+GK+FK ANG++ +GNKTLVLWKDK+GA+ YVRN Sbjct: 233 LDFINSKNLSSSDYNTGNGQASVEGNGKFFKQNANGTSSSGNKTLVLWKDKQGALNYVRN 292 Query: 301 IFNVPKGGTDYLTFNEREKNLWDFLHAEGNFSSGDNLFLQKNNNGNSPITKASDITLKNI 360 IFNV +G +DYLTFNEREK+LW+FLHA+G+F+SGDNLFL + NG SPI KASDITLKN+ Sbjct: 293 IFNVVEGSSDYLTFNEREKSLWEFLHAKGSFASGDNLFLNTDANGASPIKKASDITLKNL 352 Query: 361 YYIYAAPTHFSQXX--------XXXXXXXXXXXXXXXXXXXXXRKLRSGDATGFSGLFSN 412 YYIYAAP HFS RKLRS D++GFSGLF N Sbjct: 353 YYIYAAPNHFSAVASNSNDNNNQNNNNNNNSSDVITVSNSADTRKLRSADSSGFSGLFHN 412 Query: 413 YILAEIRTEDPVAKNGDPVKVNATLQSFLDSNNQRLEHGGNIKFQVANFVNNDGSYVPAS 472 YI++EIRTEDPV+K GDPVK+N TLQSFLD+NNQR+E+GGNIKFQV NF+++DG+Y P + Sbjct: 413 YIISEIRTEDPVSKTGDPVKINPTLQSFLDTNNQRIEYGGNIKFQVGNFLSSDGTYTPPN 472 Query: 473 YLEASRVKVLLSNGFPETATIAAANTKLVNAPLSNTLARDVSNFASSFIALGVIILLATI 532 ++ A+ VK LL+N FP ATIA A T LVNAPL+NT+ DVSNFASSFIA G+I+L+A + Sbjct: 473 FVTAATVKELLTNPFPTAATIATAKTSLVNAPLANTIT-DVSNFASSFIAFGIIVLIAAV 531 Query: 533 ALGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIINLITLAEL 592 L +R N+INL+ L EL Sbjct: 532 LLTLRYKLLGLYKALALGLSVVSSLVIFSAVGGVVDVFSFVGIFFVIAINLINLLNLGEL 591 Query: 593 FLRNIKNNASIVESWKLCLKRSFFTMIETHICWLLSALVVIYLSNYQVQQLGTLMAVSAI 652 FLRNI+NNASI+ESWKLCLKRSFF +E HI WL+SALVVIYLSNYQVQQL LMA+SAI Sbjct: 592 FLRNIRNNASIIESWKLCLKRSFFANLEFHITWLISALVVIYLSNYQVQQLANLMAISAI 651 Query: 653 TSYFLNYGLGVILVWLFVSSHSGLEWRFFLYKKDAQALTKTSSNYSILTENNDIQTDFFI 712 TSYF +YG+ ++L+ LFVSS SG W+ FLY+KDA+ALTKTSSNYS+L+ +D+ TDFFI Sbjct: 652 TSYFFSYGISIVLISLFVSSESGANWKLFLYQKDAKALTKTSSNYSLLSSTSDLNTDFFI 711 Query: 713 SKNQHDFFGKKKWSLLFIWLTVLAFGVVMLGLYLGAPQLLGNFLAADIESSTGIMXXXXX 772 +KNQHDFF K W LF+WL +LA GVVML LYL P LLG FLAAD+ESS GI+ Sbjct: 712 TKNQHDFFLKNNWKFLFVWLILLAIGVVMLVLYLVQPNLLGEFLAADVESSNGIIAGIGI 771 Query: 773 XXXXXXXXXXPRYGVXXXXXXXXXXXXXXXXXXXXMYLANFIFRIDQSTIQLIIFVYLFW 832 RYGV MYL N++F IDQSTIQLI FVYLFW Sbjct: 772 VSLLYLAYCLIRYGVAYCLSYLVSFILLCSGLFAVMYLTNYLFSIDQSTIQLITFVYLFW 831 Query: 833 LFFQARIGQTTIWTYCYWFKRSLKDRVFVKNLFNDNVNSQWRLDLIGSSVLILLFIVYAA 892 LFF A++ QTT WTY YWFKRSLKD+VF+KNLFNDN NSQW++DLI SS L+ +FI+Y+ Sbjct: 832 LFFAAKVSQTTTWTYFYWFKRSLKDKVFIKNLFNDNFNSQWKIDLIESSSLVFIFIIYSG 891 Query: 893 FNFGGINGTINLVIFYLIAIVALFSVFVNGLPLFSFGLINGWLSPYNYVQIHITLRHKKQ 952 FNFGGI+G NLVIFYLIAIV LF V LP+F FGLINGWLSP+NYV ++L+HKK Sbjct: 892 FNFGGIDGNFNLVIFYLIAIVGLFDVATAFLPMFCFGLINGWLSPFNYVHSRLSLKHKKH 951 Query: 953 MFKEVDQIEEQLISGINSF 971 FKE+DQIEEQLI+GINSF Sbjct: 952 PFKEIDQIEEQLIAGINSF 970 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508136|ref|NP_110085.1| p)ppGpp 3'-pyrophosphohydrolase [Mycoplasma pneumoniae M129] (733 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072945.1| guanosine-3',5'-bis(diphosphate) 3'- pyrophosph... 1061 0.0 >ref|NP_072945.1| guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase (spoT) [Mycoplasma genitalium G-37] Length = 720 Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/720 (70%), Positives = 599/720 (83%) Query: 14 MATLVEIERDFLQKTAQKFAPEVVALITKALDYSKKWHGEQKRLSGEPFFIHPLRTALRL 73 MAT+ EIE DFL K AQKF + LI KA ++K WH QKRLSGEPFFIHPLRTAL L Sbjct: 1 MATIQEIECDFLAKIAQKFTNAEIELINKAFYHAKTWHENQKRLSGEPFFIHPLRTALSL 60 Query: 74 VEWNMDSNTVCAGLLHDIIEDTQVTEADLTAIFGKEITDLVVKVTKITSESKKQRQLNRK 133 VEWNMD T+CAGLLHDIIEDT TEA++ IF KEI +LV KVTKIT+ESKKQR L K Sbjct: 61 VEWNMDPITICAGLLHDIIEDTDQTEANIAMIFSKEIAELVTKVTKITNESKKQRHLKNK 120 Query: 134 KEDLNLKSLVNIAMSSQQEVNALVLKLADRLDNISSIEFLAVEKQKIIAKETLELYAKIA 193 KE+LNLKS VNIA++SQQE+N +VLKLADRLDNI+SIEFL +EKQK+IAKETLELYAKIA Sbjct: 121 KENLNLKSFVNIAINSQQEINVMVLKLADRLDNIASIEFLPIEKQKVIAKETLELYAKIA 180 Query: 194 GRIGMYPVKTQLADLSFKVLDPKNFNNTLSKINQQKVFYDNEWGNFKKQLEEMLEQNQIE 253 GRIGMYPVKT+LADLSFKVLD KN++NTLSKIN+QKVFYDNEW NFK+QL+++L QNQIE Sbjct: 181 GRIGMYPVKTKLADLSFKVLDLKNYDNTLSKINKQKVFYDNEWDNFKQQLKKILAQNQIE 240 Query: 254 YRLESRIKGIYSTYQKLTFHEQNIAKIHDLFAIRLIVKSELDCYHLLGLIHLNFTVLMKH 313 Y+LESRIKGIYSTY+KLT HEQNI+KIHDLFAIRLI KSELDCYH+LGLIHLNF + K+ Sbjct: 241 YQLESRIKGIYSTYKKLTVHEQNISKIHDLFAIRLITKSELDCYHILGLIHLNFLIDSKY 300 Query: 314 FKDYIASPKQNFYQSIHTTVRLKGLNVEIQIRTQRMDHVSKYGFASHWIYKEKKEGLLAS 373 FKDYIASPKQN YQSIHTTVRLKGLNVEIQIRTQ+MD+VSK+G ASHWIYKE+KEGLLA Sbjct: 301 FKDYIASPKQNLYQSIHTTVRLKGLNVEIQIRTQQMDNVSKFGLASHWIYKEQKEGLLAP 360 Query: 374 ALQVNYLNSKQMHSRDFFKRIFGTDIIKVNVSSDNEPNIVKKLNVESNSKLLDIAYELYP 433 ALQ+NYL +KQ HS DF KRIFGTDIIK+NVS+ +EPN++K++NV+SN+KLLDIA+E YP Sbjct: 361 ALQLNYLVTKQKHSHDFLKRIFGTDIIKINVSASHEPNVIKQINVDSNNKLLDIAFENYP 420 Query: 434 KQFNKLEKIKLDGVEVMSFDVTAENEMVIEFCFGKTNNLKRRWLRYMNNHVFRERXXXXX 493 KQF KL KI++DGVE+ SFD + ENEM+IEF FGK NNLK +W+RYMNN ++RE+ Sbjct: 421 KQFAKLTKIEIDGVEINSFDTSVENEMLIEFYFGKNNNLKSKWIRYMNNPIYREKVKKSL 480 Query: 494 XXXXXXXXYSELPLYXXXXXXXXXXXXXXTQIKQRLNALGIKKLTEFLELIEYPHFPKNE 553 YSEL Y T+I++RLN L IKK++++L LIE +F +E Sbjct: 481 AKLAKSGRYSELAFYEKELGEKQLKLASETEIQKRLNTLRIKKMSDYLALIECTNFTNDE 540 Query: 554 HLYFLASNNQKWRELIKPIKFALSQAVFQNSYFEQIEGIYITKIVIETCCTKIPDMPEQV 613 HL FLA NN KW +L KP+KFA S+ VF NSYFEQIEGI+ITKIVIE CC+KIPDMPEQV Sbjct: 541 HLLFLAKNNDKWNKLTKPLKFAFSKVVFHNSYFEQIEGIFITKIVIEPCCSKIPDMPEQV 600 Query: 614 IGILMKNILRVHLHDCRELANQKQPKIIPLYWNAHQLKMRPRKFRCQINIRGVWSETTVN 673 GIL KNIL VH + C+ L N+KQ KIIPLYWN QLK++PRKFR INI GVWSE T+N Sbjct: 601 TGILTKNILSVHRYGCKNLQNKKQLKIIPLYWNIQQLKLKPRKFRSYININGVWSEKTIN 660 Query: 674 KIVQTIIEGDSYLERIIPKIDKQKDEFELNITMFIDNYHQLITIMEQITTKNISYVWKYL 733 KI QTII GD Y+E+IIPKI+KQKDEF+LNIT+F++NY QL+T+M+QITTKNIS+ WKYL Sbjct: 661 KICQTIINGDGYIEKIIPKINKQKDEFDLNITLFVNNYQQLLTLMDQITTKNISFSWKYL 720 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508137|ref|NP_110086.1| hypothetical protein MPN398 [Mycoplasma pneumoniae M129] (218 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072946.1| hypothetical protein MG279 [Mycoplasma genitali... 227 8e-062 >ref|NP_072946.1| hypothetical protein MG279 [Mycoplasma genitalium G-37] Length = 218 Score = 227 bits (578), Expect = 8e-062, Method: Compositional matrix adjust. Identities = 115/217 (52%), Positives = 150/217 (69%), Gaps = 2/217 (0%) Query: 1 MFKFLKKLSTFXXXXXXXXXXXXXTAAGYFAFENREPINNYYKEGYNKVKQYNEEIKKVS 60 M + LKKL+ F AGYFAF REPINNYYKEGYNK+ +YN EIKK+S Sbjct: 1 MIRLLKKLAVFLIILVGILLLGGIATAGYFAFTYREPINNYYKEGYNKISEYNTEIKKIS 60 Query: 61 KSLSSNELVKTLGDVESSIKEGKELTKLLG-DSALESSFNQLEDSLSKVNNFSKGSTFTE 119 +++ N LVKTL +VE S+ EG++LT+ S L+SS N LE SL K+NNF + FT+ Sbjct: 61 QNIFQNNLVKTLSEVEKSLNEGRKLTQNNSFASGLDSSLNALEGSLKKINNFDSNAAFTQ 120 Query: 120 VKNTIEKINQYVDEILKRFPNPNENDQFKEYVTNISQIVFYVGVSIIGTFVVSGALLFIF 179 +K+T+ I +VD++L++FPNPN+ND FK Y+T +SQI+FY G+SIIG F VSG LL +F Sbjct: 121 IKHTLNNITSFVDQMLEKFPNPNQNDDFKRYLTEVSQILFYTGISIIGAFFVSGFLLILF 180 Query: 180 TKRVYGVRVSRFNPQRXXXXXXXXXXXXNQDVYDEVF 216 TK+VYGVRVSRFNPQR +++VYD VF Sbjct: 181 TKKVYGVRVSRFNPQR-LLKKHLVLLLRDEEVYDAVF 216 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508138|ref|NP_110087.1| hypothetical protein MPN399 [Mycoplasma pneumoniae M129] (287 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072947.1| hypothetical protein MG280 [Mycoplasma genitali... 147 1e-037 >ref|NP_072947.1| hypothetical protein MG280 [Mycoplasma genitalium G-37] Length = 248 Score = 147 bits (370), Expect = 1e-037, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 125/255 (49%), Gaps = 23/255 (9%) Query: 33 YFKDNAAKLYIDTRKSIDSSFDSSQAFIDTYNGSSSKFSVESINXXXXXXXXXXXXXXXX 92 YF+ AA LY+ R SIDSSF+S++AF + S+++FS SI Sbjct: 16 YFRSTAANLYVQARNSIDSSFNSAKAFANALANSANQFSKSSITNNLDQVKKDLEQSLQK 75 Query: 93 XXXYEKQINQAKGLNGYLVSPEKLKELQEAKKSLQATKSQIEKYANTLKTANNGKTGQNG 152 Y+K + L +S EK++EL KK L+ +K+Q++ + N L +NG Sbjct: 76 VDEYKKNLESQNNLGN--ISQEKIRELDATKKDLENSKTQLDNFKNNL--------DKNG 125 Query: 153 XXXXXXXXXXXXXXXXXVSTRDTNGKTNSALKDIQEFSTQANDIIKQYKEIKNKIPTEKQ 212 +S + EFSTQA I+ Y++IKN IP+ +Q Sbjct: 126 TASSSPSVKKQATADGVISA-------------VSEFSTQAQSIVSSYEKIKNNIPSSEQ 172 Query: 213 FNEYYTIGAITXXXXXXXXXXXXXXXTVMTFLGSKKLGLRTFSRLTSTDQIADHVNDILD 272 FN YY + IT V +FL SKK GL FSR ST+Q+ADHVNDILD Sbjct: 173 FNNYYDVTMITIVAVSGGMLAILITTIVFSFLTSKKRGLIRFSRFISTEQLADHVNDILD 232 Query: 273 RYPELEDAVLEELDQ 287 RYP+LE+ V+ LD Sbjct: 233 RYPDLEEEVITALDH 247 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508139|ref|NP_110088.1| hypothetical protein MPN400 [Mycoplasma pneumoniae M129] (582 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072948.1| hypothetical protein MG281 [Mycoplasma genitali... 589 e-170 >ref|NP_072948.1| hypothetical protein MG281 [Mycoplasma genitalium G-37] Length = 556 Score = 589 bits (1518), Expect = e-170, Method: Compositional matrix adjust. Identities = 313/544 (57%), Positives = 388/544 (71%), Gaps = 29/544 (5%) Query: 31 INAFSAVLIVNEVLRLQSGETLIASGRSGNLSFQLYSKVNQNAKSKLNSISLTDGGYRSE 90 + FSAV+I N L QSG L+ASGRSGNL F+L+S + +A+ KL S+SL DG Y+SE Sbjct: 28 LTTFSAVMITN--LVNQSGYALVASGRSGNLGFKLFSTQSPSAEVKLKSLSLNDGSYQSE 85 Query: 91 IDLGDGSNFREDFRNFANNLSEAITDAPKDLLRPVPKVEVSGLIKTSSTFITPNFKAGYY 150 IDL G+NFRE FRNFAN LSEAIT++PK L RPVPK E+SGLIKT FITP+FKAGYY Sbjct: 86 IDLSGGANFREKFRNFANELSEAITNSPKGLDRPVPKTEISGLIKTGDNFITPSFKAGYY 145 Query: 151 DQVAADGKTLKYYQSTEYFNNRVVMPILQTTNGTLTANNRAYDDIFVDQGVPKFPGWFHD 210 D VA+DG L YYQSTEYFNNRV+MPILQTTNGTL ANNR YDD+F + VP F GW + Sbjct: 146 DHVASDGSLLSYYQSTEYFNNRVLMPILQTTNGTLMANNRGYDDVF--RQVPSFSGW-SN 202 Query: 211 VDKAYYAGSNGQSEYLFKEWNYYVANGSPLYNVYPNHHFKQIKTIAFDAPRIKQGNTDGI 270 + SN + + +W Y+ A GSPLY+ YPNH F+ +KT+A DA I + Sbjct: 203 TKATTVSTSNNLT---YDKWTYFAAKGSPLYDSYPNHFFEDVKTLAIDAKDI-----SAL 254 Query: 271 NLNLKQRNPDYVIINGLTGDGSTLKDLELPESVKKVSIYGDYHSINVAKQIFKNVLELEF 330 + P Y+II GL+G+GS L +L+LPESVKKVS+YGDY +NVAKQIF NV+ELEF Sbjct: 255 KTTIDSEKPTYLIIRGLSGNGSQLNELQLPESVKKVSLYGDYTGVNVAKQIFANVVELEF 314 Query: 331 YSTNQDNNFGFNPLVLGDHTNIIYDLFASKPFNYIDLTSLELKDNQDN--IDASKLKRAV 388 YST++ N+FGFNPLVLG TN+IYDLFASKPF +IDLT + L+ N DN IDA+KLK+AV Sbjct: 315 YSTSKANSFGFNPLVLGSKTNVIYDLFASKPFTHIDLTQVTLQ-NSDNSAIDANKLKQAV 373 Query: 389 SDIYIRRRFERQMQGYWAGGYIDRYLVKNTNEKNVNKDNDTVYAALKDINLHLEETYTHG 448 DIY RRFERQ QGY+AGGYID+YLVKN N N + D+D VY +LK++NLHLEE Y G Sbjct: 374 GDIYNYRRFERQFQGYFAGGYIDKYLVKNVN-TNKDSDDDLVYRSLKELNLHLEEAYREG 432 Query: 449 GNTMYRVNENYYPGASAYEAERATRDSEFQKEIVQRAELIGVVFEYGVKNLRPGLKYTVK 508 NT YRVNENYYPGAS YE ERA+RDSEFQ EI++RAE GV F+ +K + KY+V+ Sbjct: 433 DNTYYRVNENYYPGASIYENERASRDSEFQNEILKRAEQNGVTFDENIKRITASGKYSVQ 492 Query: 509 FESPQEQVALKSTDKFQPVIGSVTDMSKSVTDLIGVL-RDNAEILNITNVSKDETVVAEL 567 F+ + TD S+ M+K+V L+ V+ + E ++IT VS D V L Sbjct: 493 FQKLEND-----TD------SSLERMTKAVEGLVTVIGEEKFETVDITGVSSDTNEVKSL 541 Query: 568 KEKL 571 ++L Sbjct: 542 AKEL 545 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508140|ref|NP_110089.1| transcription elongation factor [Mycoplasma pneumoniae M129] (160 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072949.1| transcription elongation factor (greA) [Mycopla... 271 2e-075 >ref|NP_072949.1| transcription elongation factor (greA) [Mycoplasma genitalium G-37] Length = 161 Score = 271 bits (693), Expect = 2e-075, Method: Compositional matrix adjust. Identities = 136/160 (85%), Positives = 147/160 (91%), Gaps = 1/160 (0%) Query: 1 MELNKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEI 60 MELNKNYLT+EG KQLE ELE+LIQVKRP II+LLQEARDQGDLSENADYDAAKAQQGEI Sbjct: 1 MELNKNYLTQEGFKQLEKELENLIQVKRPEIIRLLQEARDQGDLSENADYDAAKAQQGEI 60 Query: 61 ETRIAEIQDILANVKLINESQTK-KANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEE 119 ETRIAEIQDILAN KLI++ Q K K KV+LGSTVEIYDYSSK++EKYTIVG LEANPEE Sbjct: 61 ETRIAEIQDILANAKLISDHQAKTKVTKVSLGSTVEIYDYSSKSNEKYTIVGTLEANPEE 120 Query: 120 HRISNESPLAHAIYGRLVDDECDVVGIEVPYRVKIVKIIN 159 H+ISNESPLA AIYGRL+ DECDVVGIEVPYRVKI+KI N Sbjct: 121 HKISNESPLALAIYGRLIGDECDVVGIEVPYRVKILKISN 160 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508141|ref|NP_110090.1| putative prolyl-tRNA synthetase; similar to Swiss-Prot Accession Number P38708, from S. cerevisiae [Mycoplasma pneumoniae M129] (483 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072950.1| prolyl-tRNA synthetase (proS) [Mycoplasma genit... 651 0.0 >ref|NP_072950.1| prolyl-tRNA synthetase (proS) [Mycoplasma genitalium G-37] Length = 483 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/483 (64%), Positives = 372/483 (77%) Query: 1 MANKDQNLTLWYDQLLSKAQLVSYGDVKGTNCFLPNSWNLWLQIQRLYNNATALIKLKDK 60 M K Q+LT WYDQLL KA+L+ +G+VKGT CFL NSW LW++IQ+LYN+A A Sbjct: 1 MTKKTQDLTSWYDQLLVKAKLICHGEVKGTVCFLNNSWGLWMEIQQLYNDAIANKNQLSA 60 Query: 61 VILKQFIPIEPLPYTVEQVQLPTLSFYSEYQKEKRHVEGFNPELFLIEQIGTKKLHDPLV 120 + L +F P Y V QVQLPTLSFYSEYQKEK H++GFNPELFLI Q+G K+L+DPLV Sbjct: 61 IALTKFQPTTSFCYQVFQVQLPTLSFYSEYQKEKTHIKGFNPELFLINQVGQKQLNDPLV 120 Query: 121 LRPTSEIAFCNLWKKQSFSYQNLPVIYNQWTCVFRAEKNTRPFLRNSEFYWQETHGLFSD 180 LRPTSEIAFCNLWKKQ SY +LP+IYNQWT VFRAEKNTRPFLRNSEFYWQETHGLF D Sbjct: 121 LRPTSEIAFCNLWKKQELSYHDLPLIYNQWTQVFRAEKNTRPFLRNSEFYWQETHGLFVD 180 Query: 181 GVNSESAAIAFWKLYQDIIVNQLCIPAFVGLKSPNERFAGAQNTWTVESIMPDGQALQCA 240 SE AAI+FW LYQD+I+N+LCIPAFVGLKS +E+FAGA+NTWT+E+IMPDGQ+LQCA Sbjct: 181 QSQSEQAAISFWNLYQDLIINKLCIPAFVGLKSESEKFAGAKNTWTIEAIMPDGQSLQCA 240 Query: 241 TSHDLGQTFTKPFGLTFQNQANQQAIPYSFSCGISTRILGALLLTHSDDFGLVLPWKVAP 300 TSHDLG TFTK F +++Q++ NQ+ P SFSCG+STRILGA+ LTHSDD+GLVLPW +A Sbjct: 241 TSHDLGDTFTKSFTISYQSKTNQKMTPSSFSCGMSTRILGAIFLTHSDDYGLVLPWYLAS 300 Query: 301 IQVKLYLFDKKGDTKTVELAQKVQTLLEQLAIRFQFIKVENQLGKQLGQGEVNGIPFQLI 360 QVKLYLFDK + KT LA V+ LE+L IRF FI++ NQLGKQL +GE+ GIP Q+I Sbjct: 301 KQVKLYLFDKNNNPKTRALAFLVKDFLEKLKIRFSFIEINNQLGKQLLKGEIEGIPLQMI 360 Query: 361 VDNPQTVNIFNRLTRVKTAYSFEQLASRFVELVQQYHQAMYDXXXXXXXXXXXXXTTLKQ 420 VDN +T+NIFNRLTR+KT+ +F L + FV LV YH MY TLK+ Sbjct: 361 VDNEKTINIFNRLTRLKTSLTFANLQTEFVNLVNNYHTEMYRKANDLVEQKLARVQTLKE 420 Query: 421 IEQAFNDKKAVLCAVRLTDTLEQQLKERYQVTVRCCLEQLQKPQICPFSGESAQDYVLIA 480 IEQAF +KKAVLC V+LT LEQ LK +YQV+VRC ++ Q CPF+ + D VLIA Sbjct: 421 IEQAFKNKKAVLCTVKLTGELEQHLKTKYQVSVRCVFKKSDVTQNCPFTNQPCFDSVLIA 480 Query: 481 RAY 483 RAY Sbjct: 481 RAY 483 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508142|ref|NP_110091.1| hypothetical protein MPN403 [Mycoplasma pneumoniae M129] (122 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072951.1| hypothetical protein MG284 [Mycoplasma genitali... 172 1e-045 >ref|NP_072951.1| hypothetical protein MG284 [Mycoplasma genitalium G-37] Length = 132 Score = 172 bits (436), Expect = 1e-045, Method: Compositional matrix adjust. Identities = 84/110 (76%), Positives = 92/110 (83%) Query: 8 QSKHLYSLMTKFKRSQLILKHQSNNFASELWNEEDIIRSKQFIELIEDTLLHLKKDTVDF 67 QSK L +LMTKFKRSQLILKHQ+NN A ELWNE DI SKQ IELIEDT LKK+TVDF Sbjct: 12 QSKSLAALMTKFKRSQLILKHQANNIALELWNENDINLSKQLIELIEDTFSMLKKETVDF 71 Query: 68 IYDIFIYGKKPCDISYSNSTYYKKLNKAANSFFDHFVWEAPIYKTKELKN 117 IYDI+IYGKKPCDI YSNSTYYKKLNKAANSFFDHFVW++ I + + N Sbjct: 72 IYDIYIYGKKPCDIGYSNSTYYKKLNKAANSFFDHFVWDSSILDKRIITN 121 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508143|ref|NP_110092.1| hypothetical protein MPN404 [Mycoplasma pneumoniae M129] (346 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072952.1| hypothetical protein MG285 [Mycoplasma genitali... 393 e-111 >ref|NP_072952.1| hypothetical protein MG285 [Mycoplasma genitalium G-37] Length = 347 Score = 393 bits (1010), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/345 (54%), Positives = 246/345 (71%) Query: 2 TILTVRQIQNNYYTEYYMGPVRNFADKKEVYFDAKVNNIESKVNKDKALLHITLALKYDS 61 IL V++IQNN TEY M PVRNFA+ K+VYFDA++ NIESK++ +A +H+T+ALKY++ Sbjct: 3 AILNVQRIQNNQVTEYTMSPVRNFANTKDVYFDAQLTNIESKIDSSRAQIHLTIALKYNT 62 Query: 62 NFPSNMFQAQFKLGNWSSEKIPLQKAPDKKSDLENKIHYFYATLEVPRTALIKREINRIS 121 N P N+FQA F LGNW S+KI LQKAPDKK D N I YFYA L+VPR+AL K+EINR S Sbjct: 63 NLPDNIFQAHFSLGNWQSDKIQLQKAPDKKHDSLNSIKYFYAFLDVPRSALAKKEINRFS 122 Query: 122 EYIREELTIAFRLNDSSDRYHWSNYNLFDTVAADMYQTVIKETVTFGNMIRLNQLEGEKE 181 + L I+FRL D S++ +WS+Y+LFDTVA+++Y TVIKET+ FGNMI++N L+G K+ Sbjct: 123 NVVARVLRISFRLQDQSEKGNWSDYHLFDTVASELYATVIKETINFGNMIKINALDGSKQ 182 Query: 182 GNIQQSELKYGWTMLDYRNMGPLEEVNNLINIKFNQPXXXXXXXXXXSYTAPDGKRQELK 241 Q KY WTM DYRN+ L+EV NLINI F++P Y G+ QE+K Sbjct: 183 LTSSQGSFKYSWTMYDYRNLEQLDEVRNLINISFDKPVQIVNVDVKIHYVPTKGRLQEIK 242 Query: 242 DQAEYQHTLNPNEEFKLNFPRRLSFNRVTKKLDFDPNGSAVFLPQGGFGSYEIKLEANVG 301 Q E+++ L+ NE+ KLN +F++ KKL D +G+ +FLPQGG+GSYEI + A VG Sbjct: 243 QQGEFENNLDVNEKLKLNLIGNWNFDKHNKKLISDISGTGIFLPQGGYGSYEIMIGATVG 302 Query: 302 NQFYTIVATNSFEYAHPFDDPKTNDFFLVQYAPVYSLFNFSDLIQ 346 N FYTI+A N F+Y P DD + NDFF V Y PVYS +NFSDL Q Sbjct: 303 NDFYTIIANNQFKYETPLDDLEQNDFFEVNYLPVYSTYNFSDLTQ 347 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508144|ref|NP_110093.1| hypothetical protein MPN405 [Mycoplasma pneumoniae M129] (197 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072953.1| hypothetical protein MG286 [Mycoplasma genitali... 272 2e-075 >ref|NP_072953.1| hypothetical protein MG286 [Mycoplasma genitalium G-37] Length = 196 Score = 272 bits (696), Expect = 2e-075, Method: Compositional matrix adjust. Identities = 126/196 (64%), Positives = 159/196 (81%) Query: 1 MIFSISKRKLICGFSLVALTIAGIVGGVYLVTKXXXXXXXXXXHFNVADPVNKVPNWRKL 60 MIFSISKRKLICGF LV LTI G++GGVYLVTK +FN + ++K+PN++ + Sbjct: 1 MIFSISKRKLICGFLLVILTIGGVLGGVYLVTKNNKDNYQNESNFNNQEQISKIPNFKAI 60 Query: 61 GPETQRELRDLLYPLDDTGYFIYKYGAISRYLQSQKELDELVDYRTVLPSTQKHFKYDSF 120 GPETQR LR+ YPLDD+GY++YKYG I+RYL+++ ELDEL++YR ++PS + H K +F Sbjct: 61 GPETQRILRERNYPLDDSGYYVYKYGEINRYLRNESELDELINYRVMVPSLKLHHKRVNF 120 Query: 121 NQSVLESKLRKWLMKAIKQHPYFQHFEFDPVLKAQYNINIPAQKITVNAVWFYKKDNDLT 180 +++ LESKLRKW++KAIKQH YFQHFE +P L+ QYN+NIPAQKI VNAVW YKKDND Sbjct: 121 DKAFLESKLRKWIIKAIKQHNYFQHFENEPNLRVQYNMNIPAQKIDVNAVWSYKKDNDAA 180 Query: 181 TGKPIRYWDQFEIKLK 196 TGKPIRYWDQFE+KLK Sbjct: 181 TGKPIRYWDQFELKLK 196 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508145|ref|NP_110094.1| acyl carrier protein homolog [Mycoplasma pneumoniae M129] (84 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072954.1| acyl carrier protein, putative [Mycoplasma geni... 90 4e-021 >ref|NP_072954.1| acyl carrier protein, putative [Mycoplasma genitalium G-37] Length = 84 Score = 89.7 bits (221), Expect = 4e-021, Method: Compositional matrix adjust. Identities = 43/67 (64%), Positives = 54/67 (80%) Query: 18 NFKTELDESVLQKPFRELKIDSLDMFSVIVSLEKEFDIMFEDEKLMQLNNLAELIAEVKH 77 NF LDE + +P RELKIDSLDMFS++VSLE EF I F+DEKLM L NLA+L+ EVK+ Sbjct: 18 NFNLNLDEKTINQPLRELKIDSLDMFSIVVSLENEFGISFDDEKLMNLKNLADLVLEVKN 77 Query: 78 LISQKGV 84 L+++KGV Sbjct: 78 LLAKKGV 84 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508146|ref|NP_110095.1| lipase [Mycoplasma pneumoniae M129] (879 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508147|ref|NP_110096.1| hypothetical protein MPN408 [Mycoplasma pneumoniae M129] (760 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 638 0.0 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 468 e-134 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/801 (44%), Positives = 491/801 (61%), Gaps = 85/801 (10%) Query: 5 KGFFALSSCTLGLGLILTACGARGKFDQVDDGVIKLATSIQNKDSIAALNTIYKKYKE-R 63 KGF A+ G +L AC +FDQVDDG IKLA+S+ +K + AL T+ KKY + + Sbjct: 4 KGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYNDTK 63 Query: 64 HPGSYPVQNFQVPGGYSGLRNDIRTRLSAKDGNNFYNIVLNYPDVVSSLATSDMQLILDN 123 PG YP++ Q+ GGY G + D++T++S KD NNFYN++LNYP++VS+L+ S M L D Sbjct: 64 DPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALNFDG 123 Query: 124 VDTKLLSKNFLSFNERIGGVRQKGIYAIPISLSTELMVLNGPVLHYILNSAKKKENGAQM 183 V+ L NFLSFN RIGG+R GIYAIPIS+ST+LMV+NGPVLHYILNSA+K+ Sbjct: 124 VNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTPTST 183 Query: 184 IKRS--GSFSTVQKGTMAIDMNDQKTKDLWQKIENAAKANGKTTSTQTSPQPKNAVSSLQ 241 ++ S S +KGT+ I ND +T LWQ I+ A+ N T+ + +++ SS Sbjct: 184 TVQATVSSRSAEKKGTLEI-ANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSSST 242 Query: 242 LKQAAEGTSTDNSQDAENSDNEIKKTWGEYKEEGNHTLKGYTFKASVFENWNELLDFSTR 301 E ++D SDN+IK+ WGEY +E + LK +TFKAS+FENWNE LDF+TR Sbjct: 243 TSTTGE------TKDTTKSDNKIKEFWGEY-QEVDGGLKNFTFKASIFENWNETLDFATR 295 Query: 302 VANSFPDKIKNQASKKATELQGVFGVDSVSGALFSATFAAGGGDYDKFFFNV--KNGRGN 359 +ANSFP+K+KN +K +LQGV GVDS S AL++A FAAG +YD FFFN+ + G + Sbjct: 296 IANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYAD 355 Query: 360 FRNLLEKGSSYNNLQKVFNDYKQLISSNGLYINKGGAYSSNFLKFHQLAFSVGSSSGYHF 419 + N L K SSY NL+ V+ND+ +LI +NGL++N+GG+YSSNF KFHQLAFSV SS GY + Sbjct: 356 YSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSGGYSY 415 Query: 420 AFAGESAKRLEFGQKAIEYPRDTYEIKAPTNSQNGNGTLLGSFTKSKSNGKEQSGQDEDN 479 FA ++AKRL+F AIEYP T I+AP NS LLG+F S+ + Sbjct: 416 YFAKDNAKRLKFSNYAIEYPSFTQTIQAP-NSSETESNLLGTFKLSEKD----------- 463 Query: 480 QTSETIELYKSSVPSGKEAGKNALAITNQQLISALENAAKDNKTSQPQARSLTASDQVQI 539 I LYK S+PSGK+ G +A+ I+N LI+ LE A + N ++ Sbjct: 464 -----INLYKGSIPSGKQQGVDAILISNPNLINILEQAKQKNTAQGSES----------- 507 Query: 540 TQSSDKVIGYITTSNLDIDNNNTFDVGKLNGDKSTSKIIVNATLKTLNKINTLQSEEGII 599 +++K+IGY TT+N+++DN N F V KLN ++ KIIVNAT +TL++ TLQS E I+ Sbjct: 508 --TTNKIIGYTTTANVNVDNQNIFSVSKLNNEQFQRKIIVNATEETLDQSQTLQSNESIV 565 Query: 600 LPHPQKYKSTDPQAVATVQGPSIIGVHANAKENAETQKFINWFINQKET-WPENSXXXXX 658 LP P KYKSTD V QGP++IG+HAN KEN ET+KF+NWF+NQ T W N+ Sbjct: 566 LPMPGKYKSTDKNKVMITQGPNLIGIHANEKENIETKKFVNWFLNQSITDWNSNNQQKNS 625 Query: 659 XXXXXMTAAQYFAKSSGYVLPYSETFTKQSEDE--------------------------- 691 TAA+YF + Y+LP E F K S+ E Sbjct: 626 DQTTK-TAAEYFTDQASYILPLKEKFNKSSDLELKGSSSSSNLTTSSASASLLISNNSST 684 Query: 692 -------------HSTTKDAYKILKDVNDGKLVGYSDPSDFRSGKFRDTIVAAFSGAVSS 738 ++ T A ++ + + +++ +SDPSDFR+G FR+ I ++F+ AV+S Sbjct: 685 ASSPAPKKTNNNSNTFTAKALELFQQAANNEIIPFSDPSDFRNGTFRNNISSSFNAAVNS 744 Query: 739 KADFNKFFKGFEQQLGQEYRR 759 K FN+F + F LG +RR Sbjct: 745 KVSFNQFVQNFINSLGSGFRR 765 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 468 bits (1205), Expect = e-134, Method: Compositional matrix adjust. Identities = 302/765 (39%), Positives = 433/765 (56%), Gaps = 75/765 (9%) Query: 3 IKKGFFALSSCTLG-LGLILTACGARGKFDQVDDGVIKLATSIQNKDSIAALNTIYKKY- 60 +K F LSS LG + L TAC A +FDQVDDG IKLAT + + + +L TI KY Sbjct: 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKYN 59 Query: 61 KERHPGSYPVQ--NFQVPGGYSGLRNDIRTRLSAKDGNNFYNIVLNYPDVVSSLATSDMQ 118 ++ P YPV+ + G YS + D++ +L AKD NNFYN+ NY DVVS L+ S M+ Sbjct: 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query: 119 LILDNVDTKLLSKNFLSFNERIGGVRQKGIYAIPISLSTELMVLNGPVLHYILNSAKKKE 178 L D VDT +FLSFN I V IYA+P ++S E++VLNGPVLHYIL+SAKK Sbjct: 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDS 179 Query: 179 NGAQMIKRSGSFSTVQKGTMAIDMNDQKTKDLWQKIENAAKANGKTTSTQTSPQPKNAVS 238 N + + S KGTM + +D +T LW K+E AAK N +T TQ Sbjct: 180 NTTLSTHSASNNS--NKGTMVV-ASDSETSSLWTKLEAAAKMNAQTNETQV--------- 227 Query: 239 SLQLKQAAEGTSTDNSQDAENSDNEIKKTWGEYKEEGNHTLKGYTFKASVFENWNELLDF 298 LK +++ S + SD EIKK WG+Y +E + LK YTFKASVF NW +L DF Sbjct: 228 ---LK-----SNSSESNQTQASDTEIKKIWGDY-QEVDGGLKNYTFKASVFNNWKDLNDF 278 Query: 299 STRVANSFPDKIKNQASKKATELQGVFGVDSVSGALFSATFAAGGGDYDKFFFNVKNGRG 358 +TR+A SF K++ +KK E+Q VFG+ S+ AL++A FA+G DY+ F FN+KN R Sbjct: 279 ATRIAKSFT-KLQ-TTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRI 336 Query: 359 NFRNLLEKGSS-YNNLQKVFNDYKQLISSNGLYINKGGAYSSN-FLKFHQLAFSVGSSSG 416 NF N K S+ + NL+ +FN +K LI NGL N N + KF+QLAF S++ Sbjct: 337 NFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTAR 396 Query: 417 YHFAFAGESAKRLEFGQKAIEYP--RDTYEIKAPTNSQNGNGTLLGSFTKSKSNGKEQSG 474 + ++FA +S KRL K IE + +E+ ++S N N L+G T S N K+ Sbjct: 397 FPYSFASDSVKRLIVNDKTIENKNNKSVFEVNLSSDSDN-NSNLIG--TVSLENSKQ--- 450 Query: 475 QDEDNQTSETIELYKSSVPSGKEAGKNALAITNQQLISALENAAKDNKTSQPQARSLTAS 534 + LY+ V S K+ G +AL I ++ LI+ L K+ + Q + +AS Sbjct: 451 ----------VSLYEKQVDSNKQIGVDALLIKDETLINHL-------KSLKSQVSAKSAS 493 Query: 535 DQVQITQSSDKVIGYITTSNLDIDNNNTFDVGKLNGDKSTSKIIVNATLKTLNKINTLQS 594 + Q Q+ ++ + ++ D FDVGKLNG T+KII+NAT T KI+TLQ Sbjct: 494 ETSQTKQNK----TFLAFTTVNADQKAIFDVGKLNG--KTAKIIINATETTNAKISTLQE 547 Query: 595 EEGIILPHPQKYKSTDPQAVATVQGPSIIGVHANAKENAETQKFINWFINQKETWPENSX 654 +E I+L PQ+++STDP +A VQGPS+IG+HAN +E+ ET+KF+NW++N K W ENS Sbjct: 548 KEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFVNWYLNTKVQWEENSI 607 Query: 655 XXXXXXXXXMTAAQYFAKSSGYVLPYSETFTKQSEDEHSTTKDAYKILKDVNDGKLVGYS 714 T A+Y A + Y+LP F + + +S + + D + ++ Sbjct: 608 K---------TPAEYVADKASYLLP----FKNRLNNTNSYNEFVKTAVSQFADKNVTKFA 654 Query: 715 DPSDFRSGKFRDTIVAAFSGAVSSKA-DFNKFFKGFEQQLGQEYR 758 +P+DF S K RD + + + A+++ + DF+ F LG + + Sbjct: 655 EPADFLSNKVRDGVKSNLNAAINNHSIDFDSFINDLTDYLGSDVK 699 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508148|ref|NP_110097.1| hypothetical protein MPN409 [Mycoplasma pneumoniae M129] (533 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 213 5e-057 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 213 bits (541), Expect = 5e-057, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 199/383 (51%), Gaps = 78/383 (20%) Query: 1 MDYVPWIGNGYRYGKNHRGVDDITAPKXXXXXXXXXXXXXXXXXXFLPTFSNVGVGLKAN 60 +D++PWIGNG LPTFSN+ VG+K+ Sbjct: 765 LDFLPWIGNG------------------KPFSNSPSPSTSASSSTPLPTFSNINVGVKSM 806 Query: 61 VQATLXXXXXXXXXXXKWPTLDQANLLLWTGSGWR----NDKNG------QSDENHTTFK 110 + L +W + + +WTG+G+R N KNG + N T F Sbjct: 807 ITQHLNKENT------RWVFIPNFSPDIWTGAGYRVQSANQKNGIPFEQVKPSNNSTPF- 859 Query: 111 XXXXXXXXXXXXXXXXXNPDSLKQDKISKSGDSLSVVDTGQGDDTHYANLPPSITPTSDW 170 +P+S +K++ SG G T Y LP SI+PTSDW Sbjct: 860 -----------------DPNS-DDNKVTPSG--------GSSKPTTYPALPNSISPTSDW 893 Query: 171 PNALSFTNKNNAQRVQLFLRGLLDSIPVLVNKSGQDDNSKFKAEHQKWKYSDFKSDQTKL 230 NAL+FTNKNN QR QL LR LL +IPVL+NKSG ++ K QKW K++ + Sbjct: 894 INALTFTNKNNPQRNQLLLRSLLGTIPVLINKSGDSNDQFNKDSEQKWD----KTETNEG 949 Query: 231 NLPAYGEVNGLLNPALVETYFGTTRAGGSGNQNRTTVPGIGFKIPEQNNDSKAVLITPGL 290 NLP +GEVNGL N AL+ TY G G +T P IGFK + ++ S + L+ GL Sbjct: 950 NLPGFGEVNGLYNAALLHTY------GFFGTNTNSTDPKIGFKA-DSSSSSSSTLVGSGL 1002 Query: 291 AWTPQDVGNLVV-SGTTVSFQLGGWLVTFTDFVKPRSGYLGLQLTGLDVSEATQRELIWA 349 WT QDVGNLVV + T+ FQLGGW +TFTDF++PR+GYLG+ L+ L + +IWA Sbjct: 1003 NWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYLGITLSSLQ-----DQTIIWA 1057 Query: 350 PRPWAAFRGSWVNRLGRVESVWD 372 +PW +F+GS+++ G +S+WD Sbjct: 1058 DQPWTSFKGSYLDSDGTPKSLWD 1080 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508149|ref|NP_110098.1| hypothetical protein MPN410 [Mycoplasma pneumoniae M129] (148 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508150|ref|NP_110099.1| hypothetical protein MPN411 [Mycoplasma pneumoniae M129] (252 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508151|ref|NP_110100.1| not in Genbank, but in the ZMBH list~MPN412 [Mycoplasma pneumoniae M129] (278 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 203 1e-054 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 203 bits (517), Expect = 1e-054, Method: Compositional matrix adjust. Identities = 105/227 (46%), Positives = 143/227 (62%), Gaps = 32/227 (14%) Query: 49 KVKVLQVAMKKKSDSEDNGQIELETNNLANAPIKRGSNNNQQVQLKAD-DFXXXXXXXXX 107 + K L+V +++ S S+ L N+ A P+K N++ +V+L+A+ +F Sbjct: 273 RAKALKVEVERGSQSD-----SLLKNDFAKKPLKH-KNSSGEVKLEAEKEFTEA------ 320 Query: 108 XXXXXXXXXXNPGPWTPWLTTEQIHNDPAKFAASILILYDAPYARNRTAIDRVDHLDPKV 167 W P LTT+QI + A+++ YDAPY+ N TA VDH+DPK Sbjct: 321 --------------WKPLLTTDQIAREKG-MGATVVSFYDAPYSENHTAFGLVDHIDPKK 365 Query: 168 MTANYPPSWRTPKWNHHGLWDWKARDVLLQTTGFFNPRRHPEWFDGGQTVADNEKTGFDV 227 M NYPPSW+TPKWNHHG+WD+ AR++LLQTTGFFNPRRHPEWFD GQ ADN GF V Sbjct: 366 MVENYPPSWKTPKWNHHGIWDYNARNLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKV 425 Query: 228 DNSENTKQGFQKEADSDKSAPIALPFEAYFANIGNLTWFGQALLVFG 274 ++++ K GF+K + S+PIALPFEAYFANIGN+ G ++ +FG Sbjct: 426 GDTDHKKDGFKKNS----SSPIALPFEAYFANIGNMVAIGNSVFIFG 468 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508152|ref|NP_110101.1| not in Genbank, but in the ZMBH list~MPN413 [Mycoplasma pneumoniae M129] (139 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508153|ref|NP_110102.1| hypothetical protein, involved in cytadherence [Mycoplasma pneumoniae M129] (493 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 337 2e-094 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 337 bits (864), Expect = 2e-094, Method: Compositional matrix adjust. Identities = 197/461 (42%), Positives = 258/461 (55%), Gaps = 88/461 (19%) Query: 9 NFTNNPAPKAVTGFKLDNGRAYRKLNEAWPVYEPLXXXXXXXXXXXXXXXXXXASEPKGD 68 + NNP+P A TGFKL G AYRKL+E+WP+YEP+ +E K D Sbjct: 192 DLNNNPSPNASTGFKLTTGNAYRKLSESWPIYEPIDGTKQGKGKDSSGWSSTEENEAKND 251 Query: 69 APLVSSTGSQMSAVTDSQQSGHNSGLVSLAQRSTTVAVQKSDSSGFQGQGTTDNKFQKYL 128 AP VS GS F KYL Sbjct: 252 APSVSGGGSSSGT------------------------------------------FNKYL 269 Query: 129 NTAQALHQMGVIVPSLETWPGKPSTGIATRAGGGVSVQAATRQSSSTNEDLP-NVITQLY 187 NT QAL +G++ ++ P NVITQLY Sbjct: 270 NTKQALESIGILF----------------------------------DDQTPRNVITQLY 295 Query: 188 HTSTSQLAYLNGQIVVMGSNAVPSLWYWVVD---ERTTSGSATWWAKTHLNFGTEVQKSF 244 + STS+LA N IVVMG++ +PS+WYWVV+ + S TW+A T+L++G + QK F Sbjct: 296 YASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWGEDKQKQF 355 Query: 245 VENQLGFXXXXXXXXXXXXXXAQDLTQPAYLITGLDVVQDHLVFAAFKAGAVGYDMTTDS 304 VENQLG+ ++ TQPAYLI+G+D V D ++F+ FKAG+VGYD ++ S Sbjct: 356 VENQLGYKETTSTNSHNFH--SKSFTQPAYLISGIDSVNDQIIFSGFKAGSVGYDSSSSS 413 Query: 305 NAS---TKDQALAWSTTAGLDSAGGYNNLVENTAGLNGPINDLFTLLDTFAYVTPVSGMK 361 ++S TKDQALAWSTT LDS GY +LV N GLNGPIN F++ DTF++V P SG Sbjct: 414 SSSSSSTKDQALAWSTTTSLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFVVPYSGNH 473 Query: 362 GGSQNNEEVQTKYPVKDDSKASAKIASLINASPLNSYGDDGVTVFDALGLNFNFKLDEAR 421 + ++T YPVK D K++ KI SLINA+PLNSYGD+G+ VFDALGLN+NFK ++ R Sbjct: 474 TNNGTTGPIKTAYPVKKDQKSTVKINSLINATPLNSYGDEGIGVFDALGLNYNFKSNQER 533 Query: 422 LPSRTDQLLVYGIVNESELKSARENAQSTSDDNSNTKVKWT 462 LPSRTDQ+ VYGIV+ +EL+SA+ +A ST D TKV W+ Sbjct: 534 LPSRTDQIFVYGIVSPNELRSAKSSADSTGSD---TKVNWS 571 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508154|ref|NP_110103.1| high affinity transport system protein P37 [Mycoplasma pneumoniae M129] (380 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072955.1| high affinity transport system protein P37 [Myc... 450 e-128 >ref|NP_072955.1| high affinity transport system protein P37 [Mycoplasma genitalium G-37] Length = 368 Score = 450 bits (1158), Expect = e-128, Method: Compositional matrix adjust. Identities = 216/363 (59%), Positives = 270/363 (74%), Gaps = 12/363 (3%) Query: 18 IIPATIFVSCARRESNHLIFNISLDHDADASISKFFELYSNNLSKKLDKKVTVSFNIIDD 77 II ++ +SCA + N LIFNISLDH+AD SI KFF ++S LS KL+KK+ V+FNI+DD Sbjct: 17 IISTSLLISCATKSDNTLIFNISLDHNADTSIEKFFTVFSKKLSGKLNKKINVNFNIVDD 76 Query: 78 SFTKISNIQTAKADFAFVNSQSIKDNGIEEFNLILQTQTDAFKEDTNLDYYSDGQLKSKA 137 SFTKI+NIQ KADFAFVNSQ+I N + ++QT T AFKED LDYY DG L+ KA Sbjct: 77 SFTKINNIQANKADFAFVNSQAIASNNWFGYTPLIQTLTTAFKEDLELDYYEDGNLQKKA 136 Query: 138 EKMTTLFSKTPYKDWEDTAQQWTGSRYNFLYETNKLINFYRGMILITGSEEEIKKIKEAW 197 EK LF PYK+W+D Q+WTG+RY+FLYE +KL++FYR MILITGS EI IK+AW Sbjct: 137 EKTNLLFLSPPYKEWDDIKQKWTGNRYDFLYEPSKLVSFYRSMILITGSASEITAIKKAW 196 Query: 198 DQKKWSDFMNYGIGHGSSGSAGKFQLPDLLLRKHFGSSYPGLQNAINQNPDKFANVRGRE 257 ++K W+ FM +GIGHG + SA +F+LPDLL RKHF +YPGLQNAIN +PDKFA VRGRE Sbjct: 197 NEKNWNQFMKFGIGHGQTNSASRFELPDLLFRKHFAKNYPGLQNAINSDPDKFAVVRGRE 256 Query: 258 IGRDNKIKIVFDDANSFAWTHNDKNATNHFYTPTEXXXXXXXXXXXXXXXXVEILTYTDP 317 IG + IKIVFDDANSF+WT N K + FYTP + +EILTY+DP Sbjct: 257 IGINKNIKIVFDDANSFSWTQNIKGSKRPFYTPID------------PNDRLEILTYSDP 304 Query: 318 MLYDIGIVSDTLSDRYQKAIAEVFVELAKTKQDIYGPSYGYNGYNLITDPNKEILDVIHK 377 +LYDIGIVS+ LS YQKAI E+F+ELA++ +D+YGPS GYNGY +I D KE++++I K Sbjct: 305 LLYDIGIVSNNLSRIYQKAIGEIFIELAQSSEDLYGPSIGYNGYKMINDFEKEVVEIIEK 364 Query: 378 TYG 380 TYG Sbjct: 365 TYG 367 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508155|ref|NP_110104.1| ATP-binding protein P29 [Mycoplasma pneumoniae M129] (244 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasm... 298 2e-083 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 94 1e-021 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 84 2e-018 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 79 3e-017 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 76 3e-016 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 75 7e-016 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 64 1e-012 ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasm... 62 5e-012 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 60 3e-011 ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasm... 58 9e-011 ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasm... 58 9e-011 >ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 245 Score = 298 bits (764), Expect = 2e-083, Method: Compositional matrix adjust. Identities = 147/241 (60%), Positives = 196/241 (81%) Query: 4 PVLVFDQVSLRYNGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIY 63 P+L F++VS+ Y APLL+NI+F + E++CLLGKSGVGK+SLLN +TNTK + G +Y Sbjct: 5 PILSFEKVSIIYKKAPLLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVY 64 Query: 64 FNGIASNNKDYKQLKKQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLR 123 F+G+ASN K+YK+LKKQ S+LDQ+PNLIDTD+VY+AI R AK L W Q+L EP+ ++ Sbjct: 65 FDGVASNKKEYKKLKKQCSYLDQIPNLIDTDYVYEAILRSAKQKLTWLQKLICFEPKWIK 124 Query: 124 EQIIQILEEVNLKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHK 183 ++I+ IL+EVNL +YV+ IIKDLS GQKQRVE+AKLFF + ++LLVDEPTTGLD + A K Sbjct: 125 DKILAILKEVNLNDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASK 184 Query: 184 IMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIALKNKALVLDQATNKLTKQKLMQIYH 243 IM+LI F +++ +TL+FVTHD++ ALKYS RIIALKN ALVLD+ T KLTK++L +IY Sbjct: 185 IMDLITDFVKREKITLVFVTHDIDLALKYSTRIIALKNHALVLDRLTEKLTKEQLYKIYD 244 Query: 244 D 244 + Sbjct: 245 N 245 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 94.0 bits (232), Expect = 1e-021, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 15/218 (6%) Query: 20 LLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNGIASNNKDYKQL-- 77 +L +++ I+ GE + +LG SG GKT+LLN I +IS G+ +QL Sbjct: 104 ILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLLT 163 Query: 78 --KKQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILEEVNL 135 K ++ Q NLI+ YD I ++N + +QR R I ++ E++++ Sbjct: 164 YRKNNLGYVYQRYNLIELLSAYDNI-AISQNLIPKYQR---------RLDIEELAEKLDI 213 Query: 136 KEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQFARQK 195 KE + ++SGGQKQRV +A+ ++LL DEPT LD +A I+ L+ + Sbjct: 214 KEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTY 273 Query: 196 AMTLIFVTHDVEFALKYSDRIIALKNKALVLDQATNKL 233 T++ VTHDV + ++RII + + +V +Q L Sbjct: 274 KQTILMVTHDVSLT-RIANRIIKISDGKIVSNQLVRPL 310 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 83.6 bits (205), Expect = 2e-018, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 17/222 (7%) Query: 8 FDQVSLRYNGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNGI 67 F V+ YN PL+ ++F++ GE++C++G +G GK+++ +T G I G Sbjct: 11 FINVAFSYNELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGK 70 Query: 68 ASNNKDYKQLKKQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQII 127 + + L+ + Q P D F+ I E + F R++I Sbjct: 71 TVDFDNVSYLRNNIGIIFQNP---DNQFI--GITVEDDIAFGLENKCF------SRQKIK 119 Query: 128 QILEEVNLKEYVTYIIK----DLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHK 183 I++EV L+ IK +LSGGQKQRV +A + N +++ DE T LD Sbjct: 120 AIIDEVTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKT 179 Query: 184 IMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIALKNKALV 225 I + +++ A+Q +I +THD+E K +D+++ + L+ Sbjct: 180 IKQFMVKLAKQ-GKCVISITHDMEEVTK-ADKVLVMNEGKLI 219 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 79.3 bits (194), Expect = 3e-017, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 26/222 (11%) Query: 16 NGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTI-----YFNGIASN 70 N ++++ ++T + C++G SG GK++L+N ++G I Y Sbjct: 32 NPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIYIGAKQRK 91 Query: 71 NKDYKQLKKQFSFLDQVP------NLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLRE 124 K++K+L+K S + Q P + ++ D ++ + A K+ R+ Sbjct: 92 IKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPV---ALGQSKY----------DARQ 138 Query: 125 QIIQILEEVNLK-EYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHK 183 + LE + LK ++ +LSGGQK+RV +A + ++L+ DEPT GLD + Sbjct: 139 KAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGERE 198 Query: 184 IMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIALKNKALV 225 +M+L I+ A+Q+ T+ +TH +E L+ +D ++ L LV Sbjct: 199 MMQL-IKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLV 239 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 76.3 bits (186), Expect = 3e-016, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 14/190 (7%) Query: 20 LLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNG---IASNNKDYKQ 76 +L+ ++ I + I +LG SG GKT+LLN I+ S G++ NG I N++ + Sbjct: 251 VLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTK 310 Query: 77 LKKQF-SFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILEEVNL 135 ++++ ++ Q L+ V + I E NL+ +P S R I +LE V + Sbjct: 311 FRQKYVGYIFQQYGLLPNLTVRENI--EIGANLQ-------PDP-SKRISIDALLEAVGM 360 Query: 136 KEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQFARQK 195 + +LSGGQ+QRV +A+ F N ++ DEPT LDL +++ + ++ Sbjct: 361 DSLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRY 420 Query: 196 AMTLIFVTHD 205 T+I VTH+ Sbjct: 421 QTTMIIVTHN 430 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 75.1 bits (183), Expect = 7e-016, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 17/216 (7%) Query: 16 NGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNG---IASNNK 72 N + +IN I PGE + +LGKSG GKTSLL+ I+ + G + G I ++ Sbjct: 67 NNQLICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNTICCSDA 126 Query: 73 DYKQLK-KQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILE 131 L+ K ++ Q L+ V D I +L L + + ++LE Sbjct: 127 KLTALRNKNVGYIFQQYGLLRDLDVDDNI------------KLALPLKKRFNNNLEELLE 174 Query: 132 EVNLKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQF 191 + LKE+ + LSGGQ+QRV +A+ ++L DEPT +++ + KI++ +++ Sbjct: 175 RLELKEHRHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEY 234 Query: 192 ARQKAMTLIFVTHDVEFALKYSDRIIALKNKALVLD 227 R K T++ VTH+ E ++ + R+I + + +++D Sbjct: 235 NRDKGTTIVIVTHN-EKIVELAKRVIKIHDGKIIVD 269 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 64.3 bits (155), Expect = 1e-012, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 55/96 (57%) Query: 124 EQIIQILEEVNLKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHK 183 +++ ++E V LK + +LSGG KQRV +A+ ++LL+DEP + LD Sbjct: 326 KKVSDVIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKN 385 Query: 184 IMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIAL 219 + + + Q ++ +T I VTHD E AL SDRI+ + Sbjct: 386 LQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVM 421 >ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length = 253 Score = 62.4 bits (150), Expect = 5e-012, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 20 LLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNGIASNNKDYKQLKK 79 +L I+F + G H+ ++G +G GK++L+ + KGTI+FN + + ++ Sbjct: 1 MLNQISFNVQDGCHLAVIGHNGSGKSTLVKLLGGFLKAKKGTIFFNDKELTSVGFNKI-- 58 Query: 80 QFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILEEVNLKEYV 139 L Q P D + D + +E L+ L + + I ++L V LK+ Sbjct: 59 --GILLQDP---DVQLLADTLHQELIFTLENHGVL----ASEMDKIINEVLTVVELKDKQ 109 Query: 140 TYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQFARQKAMTL 199 +K LS G+KQR A L Q+ L+DE + LD ++K+ + + +++ + Sbjct: 110 FTPLKKLSFGEKQRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIV 169 Query: 200 IFVTHDVEFALKYSDRIIALKNKALVLDQATNKLTKQKLMQIYHD 244 I +THD L +D II L +L+ A + +Q + ++H+ Sbjct: 170 INITHDFN-DLFLADEIIFLSKGSLIKKFAPEAIYEQ--LDLFHN 211 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 59.7 bits (143), Expect = 3e-011, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 76 QLKKQFS-FLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILEEVN 134 QLKKQ+ FL+Q+ + + D + N ++ + + Q + + +++ ++ Sbjct: 299 QLKKQYKVFLNQL--IKNYSLKTDKLTDTQLNEIEQIKTRIVSIKQFINKTALEVANKLA 356 Query: 135 LKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQFARQ 194 + + +T +SGGQ+QRV +A+ ++LL+DEP + LD + + I QF ++ Sbjct: 357 ITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQE 416 Query: 195 KAMTLIFVTHDVEFALKYSDRIIAL 219 +T +FVTHD E A+ SD I+ + Sbjct: 417 LQITTVFVTHDQEEAMSISDVIVCM 441 >ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 357 Score = 58.2 bits (139), Expect = 9e-011, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 111/237 (46%), Gaps = 22/237 (9%) Query: 6 LVFDQVSL---RYNGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTI 62 L F+ +S+ ++N +++ + I P + + G+SG GKT+L+ + + S G I Sbjct: 72 LFFNNISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLIKQLGLFEKPSFGYI 131 Query: 63 YFNGIASNNKDYKQ-----LKKQFSFLDQVPNLIDTDFVYDAIWRE---AKNNLKWWQRL 114 Y+Q K++ ++ Q + F D+I E NLK + Sbjct: 132 NCANYCYFANQYQQKITKNFKQKIGYILQKA---EDQFFCDSILEEVLTGAVNLKLCHK- 187 Query: 115 FLVEPQSLREQIIQILEEVNLKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTT 174 + + ++ + + N+ I +LS GQK+R+ +A + + L++DEPT Sbjct: 188 ---KDVNYAKKYLDLCGLENIPLIKNPI--ELSDGQKKRLALASVLAMQVKFLILDEPTV 242 Query: 175 GLDLINAHKIMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIALKNKALVLDQATN 231 GLD + + ++++ A ++ ++ V+HDV+F + +D+II L ++ N Sbjct: 243 GLDQMAISNLSKMLV--AMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQTTVN 297 >ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 589 Score = 57.8 bits (138), Expect = 9e-011, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 27/205 (13%) Query: 8 FDQVSLRYN-GAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNG 66 F+ V+ YN P L INF++ G+ + ++G +G GK++++N + +G IY + Sbjct: 354 FENVAFGYNKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDN 413 Query: 67 IASNNKDYKQLKKQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQI 126 ++ K +++ S + Q F++ +E N++ L + ++I Sbjct: 414 FEISDVTKKAWREKISIVLQ------DSFLFSGTIKE---NIR------LGRQDATDDEI 458 Query: 127 IQILEEVNLKEYV--------TYIIKD---LSGGQKQRVEVAKLFFANSQVLLVDEPTTG 175 I + N +++ TYI LS G++Q + +A+ N+ VLL+DE T+ Sbjct: 459 IAACKTANAHDFIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSS 518 Query: 176 LDLINAHKIMELIIQFARQKAMTLI 200 +D+ + I E I + + K +I Sbjct: 519 VDVHSEKLIQESIGRLMKNKTSFII 543 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508156|ref|NP_110105.1| transport system permease protein P69 [Mycoplasma pneumoniae M129] (542 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072957.1| transport system permease protein P69 [Mycoplas... 486 e-139 >ref|NP_072957.1| transport system permease protein P69 [Mycoplasma genitalium G-37] Length = 543 Score = 486 bits (1251), Expect = e-139, Method: Compositional matrix adjust. Identities = 255/542 (47%), Positives = 337/542 (62%) Query: 1 MTSLFFYQISDKQKRWNWYWKXXXXXXXXXXXXYSFIDNFSGFNVSGFRNFSRNFIRLFT 60 +T LFF+Q+ D +KR WYWK YS+IDNFS FN G F N LFT Sbjct: 2 ITKLFFHQVGDNKKRLIWYWKLLIIIAVLAIVIYSWIDNFSSFNQFGLNVFINNITSLFT 61 Query: 61 PDTARDYFLGSYLLQTIFYVVSGSILGFVIALWFSYLTAFKIQPLYIALPTRLFTIFLRS 120 P+ +Y L +L QT F+V GS LGF+ A+ FSY TAFKIQP YIALP RL TI LR+ Sbjct: 62 PNLNHEYTLVRFLAQTAFFVTGGSFLGFIFAILFSYWTAFKIQPFYIALPIRLITIVLRA 121 Query: 121 XXXXXXXXXXXXXXXKQLTATLTITWFSWLWSTKYITAFFENSALKQFFNQSSRYIHKFK 180 KQL ATLTI+WFS+LW+TKYIT FFENS LK FFN+ R FK Sbjct: 122 FPVLLFGFLFSNLFNKQLAATLTISWFSFLWNTKYITTFFENSNLKYFFNKKIREGSGFK 181 Query: 181 AFWNTVVISQAERLWLFLLYSLEANFRWTTVLSIAGITGIGELIATPLGGTVQLNLVLIP 240 AFW T+ +S+ ERLWLF LYSLEANFRWTT+LSI GI GIG+LI PL VQ +LVLIP Sbjct: 182 AFWTTIFLSENERLWLFFLYSLEANFRWTTLLSIFGIGGIGQLIVDPLSIRVQFDLVLIP 241 Query: 241 MLTLIGFLLFLEASVFLLTKFVLQKQSQAGDYFLQAKTLQKRKWKKVMIYILALVLAAFT 300 ++ LI FL+F+E VFLL+ FV +K S+ L+ ++KRKWK+++ + +VL + + Sbjct: 242 LVVLITFLIFIEVVVFLLSSFVFEKNSEDLRPILKTTVIEKRKWKRIIFILFIVVLISLS 301 Query: 301 LANLVQLDYTVKAPGFVXXXXXXXXXXXXXXLISEDANINPLLMLLKLTTQAISLITXXX 360 LANLV +DY + F+ S D NINP+LML+KLTTQAISLI+ Sbjct: 302 LANLVTIDYRINDAEFLQDFFNQFFQLKSNLFSSNDPNINPILMLVKLTTQAISLISLVV 361 Query: 361 XXXXXXXXXXSKXXXXXXXXXXXXXXXVIRVIPSVLLFRLFDPIIFRPETTIIFVLAIHS 420 +RV+PS+LLFRL DP+ +TTII VL I+ Sbjct: 362 IFSILFGFISCNLFKKRFSISFKILLLFVRVVPSILLFRLLDPLFLEAKTTIILVLLINH 421 Query: 421 AASYGQLITINFDNANEGVINNMQNHGFSRFYILWNYLIPTTKPQLLNTLSDSFDNAIRD 480 +SYGQL++INF+ AN+ +INN +NHG ++ +ILWNYL+ KP L+N SD++D+ IRD Sbjct: 422 GSSYGQLMSINFNKANQNIINNYKNHGMTKGFILWNYLLVENKPNLINITSDAYDSVIRD 481 Query: 481 LVVXXXXXXXXXXXXXXXXXERAQYSELGTITLPLMVYLMVFEVILMAVRLNKLKVWQRH 540 L++ ERAQ+ LG++T+PLMVYL+ E+I ++VRL ++ V++ + Sbjct: 482 LILFGSFGGSIIGSRITNFFERAQFDNLGSVTIPLMVYLIAIEIIFLSVRLTRISVFKNY 541 Query: 541 LW 542 L+ Sbjct: 542 LY 543 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508157|ref|NP_110106.1| hypothetical protein MPN419 [Mycoplasma pneumoniae M129] (140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072958.1| hypothetical protein MG291.1 [Mycoplasma genita... 171 2e-045 >ref|NP_072958.1| hypothetical protein MG291.1 [Mycoplasma genitalium G-37] Length = 138 Score = 171 bits (434), Expect = 2e-045, Method: Compositional matrix adjust. Identities = 82/134 (61%), Positives = 102/134 (76%) Query: 1 MQYILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60 M+YIL IDFGLK+IGTA+ NT+D++PS F VF V+NN + AVN LF +K GYEL +IV Sbjct: 1 MKYILAIDFGLKKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIV 60 Query: 61 IGFPHFHYQSSIQVSIHKFVELIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTFKKA 120 IGFP FHY S IQ +I F +L++ RFN+P+ L+DES TTS VK L + LK++ FKKA Sbjct: 61 IGFPKFHYYSDIQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKA 120 Query: 121 KDTLAATLILERFL 134 KDTLAA LILERF Sbjct: 121 KDTLAAVLILERFF 134 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508158|ref|NP_110107.1| alanyl-tRNA synthetase [Mycoplasma pneumoniae M129] (900 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072959.1| alanyl-tRNA synthetase (alaS) [Mycoplasma genit... 1184 0.0 >ref|NP_072959.1| alanyl-tRNA synthetase (alaS) [Mycoplasma genitalium G-37] Length = 900 Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 572/872 (65%), Positives = 673/872 (77%), Gaps = 1/872 (0%) Query: 1 MKWTTDKVRQTWLDYFTAKGHLALPSKSLIPVNDPSLLWINSGVATLKDYFSAKKTPPSK 60 M WTTDKVRQTWLDYF K HL L SKSLIP+NDPSLLWINSGVATLKDYFSA+KTPPSK Sbjct: 1 MNWTTDKVRQTWLDYFAKKDHLVLASKSLIPINDPSLLWINSGVATLKDYFSARKTPPSK 60 Query: 61 RLANAQICLRVNDIENVGFTSRHQTLFEMLGNFSIGDYFKEEAIGFANDLLVNHYHLDPK 120 RL NAQICLRVNDIENVGFTSRHQTLFEMLGNFSIGDYFK EAI FA DLLVN+Y LDPK Sbjct: 61 RLVNAQICLRVNDIENVGFTSRHQTLFEMLGNFSIGDYFKTEAIDFAFDLLVNYYQLDPK 120 Query: 121 RFYITVYQDDELTFNTWLKHGIPASRIIKCDRDRNFWDLGLGPCGPCTEIYYDRGERFDP 180 RFYITVY+DDE T+ W+KH I + IIKCD+ RNFWDLGLGPCGPCTEIYYDRGE+FDP Sbjct: 121 RFYITVYEDDETTYKRWIKHKIDKNHIIKCDKSRNFWDLGLGPCGPCTEIYYDRGEKFDP 180 Query: 181 HKVGEKLFFEDIENDRYVEVWNIVFSQFNNDGNGNYSELAQKNIDTGAGIERLVAILQDA 240 K+GEKLFFEDIENDRYVE+WNIVFSQFNNDGNGNY+ELAQKNIDTGAGIERLV++LQ++ Sbjct: 181 KKIGEKLFFEDIENDRYVEIWNIVFSQFNNDGNGNYTELAQKNIDTGAGIERLVSVLQNS 240 Query: 241 PTNFDTDIFLKLIGIIEQHCKHKYDTNLYFKFDQKLNEAQSAFRIISDHFKAITFTIAEG 300 PTNFDTDIFLKLI IIE C KYD N YF FD + + QS FRII+DHFKAITFTI+EG Sbjct: 241 PTNFDTDIFLKLIKIIEAFCPFKYDPNSYFTFDPQKVKEQSYFRIIADHFKAITFTISEG 300 Query: 301 VLPGPNERSYIVXXXXXXXXXXXXXXXXXXXFIDPMVDAIISVYGSYYXXXXXXXXXXXX 360 VLPGPNER+Y+V FI+ ++D II+ Y +YY Sbjct: 301 VLPGPNERNYVVRRLLRRALIACKKLQLNLAFIEKIIDEIIASYENYYQHLKAKNETVKQ 360 Query: 361 AIWKEVTAFDKTINLGLMLFEKSIAHNALQPQVAFQLYETYGFPIEMIKELVDKRQLQVD 420 + KE+ AF+KTI+LGL+LFEKS+ +N L PQ+ FQL ETYGFP+E+I+ELV+++ L +D Sbjct: 361 VVLKEINAFNKTIDLGLVLFEKSVKNNTLTPQLTFQLNETYGFPVEIIRELVNQKGLTID 420 Query: 421 WKAVEQLMEQHRLISKQNSNTLSFEKQNEHLVNFKTASEFLYEANEITAKVIGLFDEQYQ 480 W +QLM +HR ISKQN+ T++FEKQN +LVNFKT S F Y N+I AKVIGLFDE Y Sbjct: 421 WTVFDQLMAKHRSISKQNNQTINFEKQNINLVNFKTKSTFFYHKNKINAKVIGLFDENYL 480 Query: 481 PVQKLHNQSGYVVFDQTVLYATSGGQRYDEGYCINHS-QNDQRVSFQGVFKGPNKQHFHF 539 PV++L+NQSGYVVFDQTVLYATSGGQRYDEG CINHS NDQ++SFQGVFKGPNKQHFH+ Sbjct: 481 PVKELNNQSGYVVFDQTVLYATSGGQRYDEGSCINHSNNNDQKISFQGVFKGPNKQHFHY 540 Query: 540 FLTGSFQLGDKVILVHDGKWRQLVKNNHSLEHLLHAALQNEIDPLIKQDGAFKSAQKATI 599 FL GSF+L D+V L HD WR+L NNHSLEHLLHAALQ EIDPLIKQ GAFKSAQKATI Sbjct: 541 FLVGSFKLNDQVTLSHDETWRKLAANNHSLEHLLHAALQKEIDPLIKQSGAFKSAQKATI 600 Query: 600 DFNFSRALTWAELERVXXXXXXXXXXXXXXXXXFTDLEGSQKLNAIAYFEEEYSNHELLR 659 DFN +R LT ELE+V FTD EGSQKLNAIAYFEEEYS HE+LR Sbjct: 601 DFNLNRHLTRNELEKVENKIRSLIKQKISSKEIFTDFEGSQKLNAIAYFEEEYSQHEILR 660 Query: 660 VIRFGDFSVELCGGTHVEHTGLIENCFITDYYARGTGRWRIEIISSNETIAAYLNEQNGK 719 VIRFGD+SVELCGGTHV +T IE+CFITD+Y+ G GRWRIEIISSNETI YL +N K Sbjct: 661 VIRFGDYSVELCGGTHVANTASIEDCFITDFYSLGAGRWRIEIISSNETINNYLKAENQK 720 Query: 720 LSETINSLHNTLNNIANPALNKQKTALTKQLNHFHLPQVITDLRKCQALLNELKITVNEL 779 L + + L L+ I + + L ++L+ F LP+ IT LR L LK +N+L Sbjct: 721 LIQLKSELEKVLSLIDSSIFKVELKELQQRLDKFILPEKITQLRDASDTLLALKNDINQL 780 Query: 780 KTEDFKWKQKQLAEKIKQELLELAKQDKAYVLASFAAVDPKLLSQVAQAVLNQHKNKLFV 839 KT+++K Q+ LA IK++LL L ++K+YV+A+F V+PKLL Q V NQ++ K F+ Sbjct: 781 KTKNYKVSQQALALSIKKQLLSLVDENKSYVIATFNDVEPKLLLQTLHDVFNQNQTKNFL 840 Query: 840 LLNQFNNSPSFMLLGQDVSKCIQLLKAHFELK 871 ++NQFN S SF+++G + I+ L+ F LK Sbjct: 841 IINQFNESNSFIVIGNKTTTIIEKLRNSFNLK 872 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508159|ref|NP_110108.1| glycerophosphoryl diester phosphodiesterase [Mycoplasma pneumoniae M129] (241 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072960.1| glycerophosphoryl diester phosphodiesterase, pu... 340 7e-096 ref|NP_073058.1| hypothetical protein MG385 [Mycoplasma genitali... 119 3e-029 >ref|NP_072960.1| glycerophosphoryl diester phosphodiesterase, putative [Mycoplasma genitalium G-37] Length = 244 Score = 340 bits (873), Expect = 7e-096, Method: Compositional matrix adjust. Identities = 161/241 (66%), Positives = 197/241 (81%) Query: 1 MLKRQLLLAHRGYSDIAPENTQLAFELAFQYRFDGVELDVHLTKDGELVIIHDETTTRTA 60 M +QLLLAHRGYS IAPENT+LAF+LAF+Y FDG+ELDVHLTKD +LVIIHDETT RTA Sbjct: 1 MHNKQLLLAHRGYSFIAPENTKLAFDLAFEYCFDGIELDVHLTKDEQLVIIHDETTLRTA 60 Query: 61 LVDKTIELETLASLKQDDHSAFFKFKTQPQPIMTLKEFFDQYLDKFQLINVEIKTDQKEY 120 LV+K +E E+L SLK+DDHSAFF K Q Q I+TLKEF D YLDKF+LIN+EIKTDQK Y Sbjct: 61 LVNKEVEFESLVSLKRDDHSAFFHLKIQFQSILTLKEFLDLYLDKFKLINIEIKTDQKPY 120 Query: 121 PGIEAKIDALAQQYGKKVIEKVVFSSFNFASLQRLYDINPNYQIAFLFWTKKQFQAVDAL 180 GIE K+ L + YGKK I+K++FSSFNF SLQ++YD++ +Y+ FLFWTKKQF+ + Sbjct: 121 LGIEKKLVDLVKGYGKKAIDKILFSSFNFESLQKVYDLDNSYKKGFLFWTKKQFETISTA 180 Query: 181 KIKQVCQYLHPWTNIYEKFPDMVLSLQLPLGLWTLNSEVKFHQFRQDRMVYAQIANKKFE 240 +I+++CQ+LHPWT IYEK+P M+ L LPL LWT+NS+ KF QF D VYAQIANKKFE Sbjct: 181 RIQKICQFLHPWTKIYEKYPQMIKKLNLPLNLWTVNSQNKFQQFLADNHVYAQIANKKFE 240 Query: 241 V 241 + Sbjct: 241 I 241 >ref|NP_073058.1| hypothetical protein MG385 [Mycoplasma genitalium G-37] Length = 236 Score = 119 bits (298), Expect = 3e-029, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 128/236 (54%), Gaps = 6/236 (2%) Query: 2 LKRQLLLAHRGYSDIAPENTQLAFELAFQYRFDGVELDVHLTKDGELVIIHDETTTRTAL 61 +++Q L+A+RGYS IAPENT+LAF+ A + FDG+ +D+ LTKD ++V+ H E + Sbjct: 1 MRKQFLIAYRGYSSIAPENTKLAFQAAQVFDFDGIWIDIQLTKDKQIVVTHKENFKVS-- 58 Query: 62 VDKTIELE--TLASLKQDDHSAFFKFKTQPQPIMTLKEFFDQYLDKFQLINVEIKTDQKE 119 +K + L L LK+ + ++ FK K Q I TLKE Q++ F+ + + IK D++ Sbjct: 59 -NKNLNLNQINLVDLKKVNLASEFKLKVTSQQIQTLKEVLTQFIQPFKYLLIHIKDDKEN 117 Query: 120 YPGIEAKIDALAQQYGKKVIEKVVFSSFNFASLQRLYDINPNYQIAFLFWTKKQFQAVDA 179 + +++ L + + EK++ S NF ++ + + ++ F+ KK Sbjct: 118 NNSLLEQLNLLCKDFV-LAKEKMILLSSNFHIIKLINETFKGFKTGFVIANKKALLVASR 176 Query: 180 LKIKQVCQYLHPWTNIYEKFPDMVLSLQLPLGLWTLNSEVKFHQFRQDRMVYAQIA 235 ++ + C++L P + Y K + +L LP+ LW + +++ + DR V QI Sbjct: 177 DELMRYCRFLVPNESFYHKNCKEIQNLGLPVILWVIKGLLRYQFYENDRFVKFQIT 232 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508160|ref|NP_110109.1| permease [Mycoplasma pneumoniae M129] (475 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072961.1| hypothetical protein MG294 [Mycoplasma genitali... 722 0.0 >ref|NP_072961.1| hypothetical protein MG294 [Mycoplasma genitalium G-37] Length = 474 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/475 (75%), Positives = 402/475 (84%), Gaps = 3/475 (0%) Query: 1 METKLSLKKRLQQFSKKQLIALIILGAADVFVIAAPYYIKNVVPNLHLYLGITEDEVATL 60 + TK KKRL+ FSK+Q++ALIILGA DVFVIAAPYY+KNVVPNLHLYLGITEDEVAT+ Sbjct: 3 VTTKKGFKKRLKDFSKQQILALIILGAIDVFVIAAPYYVKNVVPNLHLYLGITEDEVATV 62 Query: 61 TSIIGYVTLATQLPGGFLANRFSSRKLLFLSEISTGVITFWLATNILTRESQKSNALFVQ 120 TSIIGYVTLATQLPGGFL NRFSSRKLLFLS I+TG ITFWLA NILT+ Q +ALF+Q Sbjct: 63 TSIIGYVTLATQLPGGFLTNRFSSRKLLFLSAITTGAITFWLAANILTKNQQSHDALFIQ 122 Query: 121 YCVIWGLWGITSTLIFWTPLWKLASQQATQENQALGFGIQGAANGVWGXXXXXXXXXXXT 180 YCVIWGLWGITSTLIFWTPLWKLASQQAT+ENQALGFGIQGAANG+WG T Sbjct: 123 YCVIWGLWGITSTLIFWTPLWKLASQQATKENQALGFGIQGAANGIWGLIFIFLIALIIT 182 Query: 181 AVAYPAGGESSANNPAPFAIYAFIIGGMLLVTGFTVLFFVPEKPIEKYDSHTSLKTAKKN 240 ++ YP+GG +A++ PFA YAFII ML++TGFTVLFFV EKPIEK S T+L + K+N Sbjct: 183 SIFYPSGGSENADSK-PFAAYAFIIAIMLVITGFTVLFFVKEKPIEK-QSQTTLVSFKRN 240 Query: 241 FEQILITLKNWKLWLLSFFLMGMYVFQSTFAYYLLQMMQNAFLAPVILGTVLGGVRTYVL 300 QIL+TLKNWKLWLLSFFLMGMYVFQSTFAYYLLQM+QNAFLAPV+L TV+GG+RTY L Sbjct: 241 LNQILVTLKNWKLWLLSFFLMGMYVFQSTFAYYLLQMLQNAFLAPVVLVTVIGGIRTYAL 300 Query: 301 RSAVSVYLGRLADKFRSYILFLMLCTGLGIIFVLMFILLGFGQVGQQQNYALIIVSAILY 360 RSAVSVYL RLADK +SYILFLM+CT LGI+FVL FILLGF Q N LI S+ILY Sbjct: 301 RSAVSVYLCRLADKCKSYILFLMICTVLGIVFVLAFILLGFVQT-NSANITLITFSSILY 359 Query: 361 ILTGVLSWGMVTVRYNQVAEIEIGKNNYASSVGLLSFIGFSTDGWLYTVTSVVGKAYTPD 420 I TG+LSWGMVTVRYNQ+ EI+IGKNNYASSVGLLSFIGFSTDGWLYTVT+ VGK YT Sbjct: 360 IFTGILSWGMVTVRYNQIGEIDIGKNNYASSVGLLSFIGFSTDGWLYTVTAEVGKKYTVA 419 Query: 421 GQKNTSIQGYQIIAAICLGIALFGLLCGTIVFLVNTWELKRLGKTDYRWRTLDNA 475 GQ NTS GYQIIAAICL IALFGL+CG+IVF+ N+ E+KRL K YRWR LDNA Sbjct: 420 GQSNTSNTGYQIIAAICLSIALFGLICGSIVFISNSMEIKRLNKASYRWRDLDNA 474 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508161|ref|NP_110110.1| TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE. [Mycoplasma pneumoniae M129] (370 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072962.1| hypothetical protein MG295 [Mycoplasma genitali... 488 e-140 >ref|NP_072962.1| hypothetical protein MG295 [Mycoplasma genitalium G-37] Length = 367 Score = 488 bits (1257), Expect = e-140, Method: Compositional matrix adjust. Identities = 229/362 (63%), Positives = 282/362 (77%) Query: 4 KTVFVGISGGVDSAVSALLLKQQYREVIGIFMECWDNTLNNDQLGHRAFNEHKSGCSSKE 63 KTVF+G+SGGVDSAVSALLLK+QY+EVIG+FMECWD TLNND GH+ N +KSGCSS + Sbjct: 6 KTVFIGLSGGVDSAVSALLLKKQYQEVIGVFMECWDETLNNDFYGHKKINNNKSGCSSFQ 65 Query: 64 DFREAQAIAQLLGIKLIKQNLVEPYWKQVFLPTIDAFKNGLTPNPDMLCNRLIKFGLMRD 123 DF++A+ IA LGIKLIK+NL+E YW +VFLP I +FK GLTPNPD+ CNR IKFGL+ D Sbjct: 66 DFQQAKKIANSLGIKLIKKNLIEAYWNKVFLPMIQSFKKGLTPNPDIWCNRFIKFGLLHD 125 Query: 124 YCKQLDPNSDFATGHYAALSWDNNQPLLAIPKDKHKDQTYFLAHVKPAQLQDVVFPLAHL 183 +CKQ++PNS FATGHYA ++ NQPLL+IPKD +KDQTYFLA+VK Q Q+V+FPLA L Sbjct: 126 FCKQINPNSLFATGHYAKINMIENQPLLSIPKDTNKDQTYFLANVKKEQFQNVIFPLADL 185 Query: 184 LKTEVRQIALAHHFSVATKKDSTGICFIGERHFSDFLKNYLPVKPGVIYDWKTQRQLGSH 243 K VR IA +++ VA KKDSTGICFIGERHFSDFLKNYLPVK G+I DWKT++ + H Sbjct: 186 KKITVRNIARENNWEVADKKDSTGICFIGERHFSDFLKNYLPVKKGLIKDWKTKQTISEH 245 Query: 244 EGVWFYTTGQRSGLNLGGQAARNFVVEKDLKTNTLYVSSDPEDLQRRGITLSHFNWLYQP 303 +GVWFYT GQRSGLNLGG R+FVV KD++TN L+VS D E+L + I L FNWLY P Sbjct: 246 DGVWFYTIGQRSGLNLGGLKQRHFVVAKDIETNELFVSCDKEELLKTTILLDQFNWLYTP 305 Query: 304 NPLTQTVLVRIRHAQPLVQGHITVQPNNVVQVQLDQPIDRVTNGQYGVLYTQNGICLGSG 363 L VLVRIRHAQ + + +N +++ P+ V +GQ+GVLYT + ICLG+G Sbjct: 306 KQLPSQVLVRIRHAQKPEIAKLKLLSDNKLEITFKNPVISVASGQFGVLYTLDQICLGAG 365 Query: 364 II 365 +I Sbjct: 366 LI 367 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508162|ref|NP_110111.1| hypothetical protein MPN423 [Mycoplasma pneumoniae M129] (129 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072963.1| hypothetical protein MG296 [Mycoplasma genitali... 187 3e-050 >ref|NP_072963.1| hypothetical protein MG296 [Mycoplasma genitalium G-37] Length = 129 Score = 187 bits (475), Expect = 3e-050, Method: Compositional matrix adjust. Identities = 86/129 (66%), Positives = 105/129 (81%) Query: 1 MKPQLLALKQFVQTEFEKVDFETFRQNFNRCLEREQSTLLIYEDDDYDDQSFFLKPMLSD 60 MKPQL+A K+F+QTEF+ VDFETFR NFN CL+REQ ++IYEDDDYDDQ FF KPMLSD Sbjct: 1 MKPQLIAFKKFLQTEFQAVDFETFRINFNLCLKREQDNIVIYEDDDYDDQPFFFKPMLSD 60 Query: 61 AFFISSEVVKQLDLLAVLVDNPKGDVKSCCQSFYEALTLFISALAITKGVDVGRYHQQLG 120 FFI +EV+KQLD LA +V+NPK + CCQ+FYEAL +FISALAITKG++ R+HQ+L Sbjct: 61 GFFIQTEVIKQLDYLAKVVENPKDSDQQCCQNFYEALIVFISALAITKGINPNRFHQRLV 120 Query: 121 KRFGVLTVY 129 RF + VY Sbjct: 121 NRFAIHAVY 129 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508163|ref|NP_110112.1| hypothetical protein MPN424 [Mycoplasma pneumoniae M129] (102 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508164|ref|NP_110113.1| cell division protein FtsY [Mycoplasma pneumoniae M129] (348 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072964.1| cell division protein (ftsY) [Mycoplasma genita... 493 e-141 ref|NP_072708.1| signal recognition particle protein (ffh) [Myco... 100 2e-023 >ref|NP_072964.1| cell division protein (ftsY) [Mycoplasma genitalium G-37] Length = 346 Score = 493 bits (1269), Expect = e-141, Method: Compositional matrix adjust. Identities = 231/332 (69%), Positives = 285/332 (85%) Query: 1 MSFIHXXXXXXXXXXXLVDQVQQAVQEKSFFQANQKSYYQGLNKSANSFANTINKLAANY 60 M F+ + Q+++ V+++S FQ N K+YYQGL KSA +FA TIN+L+ Y Sbjct: 1 MGFLSKLIAKLKPKKSVAKQLKEEVEKQSLFQTNNKTYYQGLKKSATTFAKTINELSKRY 60 Query: 61 VTVNEQFQESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEIIVDKLIVYYI 120 V V+EQF+E+LFE LVLLD+GYHAA KICDAI++++KL R++D QLI+E+I+D++IVYYI Sbjct: 61 VNVDEQFKENLFEGLVLLDVGYHAANKICDAIIEQIKLNRITDFQLIKELIIDQIIVYYI 120 Query: 121 QDKLFETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAV 180 QDKLF+TDL V+ N TNVYLFVGVNGVGKTT+LAK+AD KQNKRVL+VAGDTFRAGA+ Sbjct: 121 QDKLFDTDLIVKPNFTNVYLFVGVNGVGKTTTLAKIADFFIKQNKRVLLVAGDTFRAGAI 180 Query: 181 AQLAEWAQRIGCDIVLPNPKEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNEL 240 QL +WA+ + CDIVLPNPKE+TPAVIFRGV++GI ++YDFVLCDTSGRLQNK NLMNEL Sbjct: 181 EQLNQWAKLLNCDIVLPNPKEQTPAVIFRGVKKGIDDKYDFVLCDTSGRLQNKLNLMNEL 240 Query: 241 KKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGII 300 +KIYQI+QKVS ++P ETLLVLDGT GQ+GL+QAKVFNEF++LTGI+LTKMD S+KGGII Sbjct: 241 QKIYQIIQKVSGSEPSETLLVLDGTVGQTGLSQAKVFNEFSKLTGIVLTKMDGSAKGGII 300 Query: 301 LAIKDLFNLPVKLIGFGETTADLAAFDLEQYV 332 LAIKD+FNLPVKLIGFGE T+DLA FDLE+YV Sbjct: 301 LAIKDMFNLPVKLIGFGEKTSDLAIFDLEKYV 332 >ref|NP_072708.1| signal recognition particle protein (ffh) [Mycoplasma genitalium G-37] Length = 446 Score = 100 bits (249), Expect = 2e-023, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 109/214 (50%), Gaps = 15/214 (7%) Query: 140 LFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAG-DTFRAGAVAQLAEWAQRIGCDIVL-- 196 + VG+ G GKTT+ KLA L K+ K+ M+ G D +R A+ QL +Q+ Sbjct: 103 MMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQLETLSQQTNSVFFAQG 162 Query: 197 PNPKEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQ 256 P +T + + ++CDT+GRLQ LM+EL V + P Sbjct: 163 TQPVAKTTKAALSAFKTA---KCQTIICDTAGRLQTNETLMDEL------VSVKNELNPD 213 Query: 257 ETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGF 316 E ++V+DG +GQ + A+ F++ +LTG I++K+DS ++ G L++ L +P+KLIG Sbjct: 214 EIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAALSLASLLQVPIKLIGV 273 Query: 317 GETTADLAAFDLEQ---YVLGLTKNLSLNHEPNQ 347 E L F E+ +LGL +SL + Q Sbjct: 274 SEKLDGLEQFHPERIANRILGLGDVMSLVEKAEQ 307 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508165|ref|NP_110114.1| SMC family, chromosome/DNA binding/protecting functions [Mycoplasma pneumoniae M129] (982 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072965.1| P115 protein [Mycoplasma genitalium G-37] 1360 0.0 >ref|NP_072965.1| P115 protein [Mycoplasma genitalium G-37] Length = 982 Score = 1360 bits (3520), Expect = 0.0, Method: Compositional matrix adjust. Identities = 685/982 (69%), Positives = 793/982 (80%) Query: 1 MVFLKRFRAYGFKSYADEITINFTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSK 60 MVFLKRFRAYGFKSYADEITI+FTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSK Sbjct: 1 MVFLKRFRAYGFKSYADEITIDFTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSK 60 Query: 61 SGDDMIFFGSKDKPASKLAEVELTFDNSQKLLHDPRPEISVMRRIYRGSGQSEYYINGEL 120 SGDDMIFFGSKDKPASKLAE+ELTFDNS +LLHD R EISVMRR+YRGSGQSEY+IN Sbjct: 61 SGDDMIFFGSKDKPASKLAEIELTFDNSNRLLHDSRKEISVMRRVYRGSGQSEYFINSNP 120 Query: 121 VTLKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFEDASGIGRYTKRKEEVT 180 TLKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFEDASGIGRYTKRKEEV Sbjct: 121 ATLKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFEDASGIGRYTKRKEEVV 180 Query: 181 NQLARTVQNLKQVSIVLNELKKDLKKLTIQADKAQRFVXXXXXXXXXXXSVLVADYLKSQ 240 NQL RT+ NLKQVS+VLNELKKDLKKLT+QA+KAQ+F+ +VLV +YL++Q Sbjct: 181 NQLNRTLINLKQVSVVLNELKKDLKKLTLQAEKAQQFIRVKNELKELELAVLVGEYLQAQ 240 Query: 241 GELDRFNHQIGYIEQDFKLHEPQLQLLEDQLNIFNQRFRDADEQSIKLQQELQAVYQTIN 300 ELD+FN QI E DFK+HEPQL+LLE+Q+ IFN RF AD QS +LQ+ELQ +YQ IN Sbjct: 241 TELDKFNFQINSSEHDFKIHEPQLELLEEQIVIFNSRFHSADMQSNELQKELQDIYQKIN 300 Query: 301 ELEQRKAVIDVQLKNELSKKDEKHKIQALKKLIRVDQAQLESLQAQVLKTTSEITLLTNE 360 ELEQRK +IDVQL+ S+KDEK K ALKKLI VDQ QL+ + Q+ + + IT L Sbjct: 301 ELEQRKVIIDVQLRQGFSQKDEKQKAAALKKLILVDQTQLDGFENQLSNSKTTITDLEKL 360 Query: 361 LSTVQTELDTTKLNLNQNSAALVYQQAQQEFLKAQNEEWVKTNPAHVLVKNVKAXXXXXX 420 ++ ++ +D KL + +N+A L+YQ++ + ++ Q E KTN A++LVKN A Sbjct: 361 INEQKSLVDQIKLQIEKNTADLIYQRSLKTIIELQTNELKKTNNANILVKNANALTGILN 420 Query: 421 XXXXXXKFEKQYEKALLKALGKSIGYLVVNNNLAALKAIDFLLTNQIGQVTFLPIDDIAF 480 KF+KQYEKA+LKALGKSIGYLVVNNN AA++AIDFL+ N+IG+VTFLP+DD+A Sbjct: 421 TLGTFLKFDKQYEKAILKALGKSIGYLVVNNNNAAIQAIDFLVKNEIGKVTFLPLDDVAS 480 Query: 481 DTKIAPEHMEILQQLDGFLGVGSDHVSCDESLQPIVNALLGQVIIASDLQAALKLSSYTY 540 DTKI EHMEIL+QLDGFLGV SDHV CD QP+VN LL QVIIA DL +A+ LS+YTY Sbjct: 481 DTKITNEHMEILKQLDGFLGVCSDHVKCDPLFQPVVNTLLAQVIIAKDLNSAINLSNYTY 540 Query: 541 KLYRVVTLNGETVYAGGIIQGGYVKDNLSLYNLQEKLASSEANITQLEHNEKQLRTNLTS 600 KLYR+VTL+GETVYAGGII GG+ K NLS L +E NI +LE+NE++L+ LT Sbjct: 541 KLYRIVTLDGETVYAGGIINGGFEKTNLSDGYLSSASLDNEQNINKLENNERELKKELTE 600 Query: 601 XXXXXXXXXXXXXXXXXXXXXFNERVNHTNKAILSYKIEYEQLTNESFDGTPHSFDETRL 660 F ER+ K IL K+EYEQLTN +FDG E L Sbjct: 601 LEVKLDEMNRKLKYEELLQAKFIERIVQIKKIILELKMEYEQLTNTTFDGKKAVASEAEL 660 Query: 661 VESLNRAWAERDELNSQLKLNQELKETLAKSIKLAEAKTADLRALLDEQRSQLVLAREGK 720 + SLN AWA+RDE+NS+LKLNQELK LAK+IK +E K DLRALLDEQR++LV AREGK Sbjct: 661 IHSLNSAWAKRDEINSKLKLNQELKLQLAKTIKQSEEKIVDLRALLDEQRAKLVSAREGK 720 Query: 721 IRFENTIHNITDKINGGYKLTMEFAIANYNKPIKLSTMQAQNKIARMQSQLDEMGPINLE 780 IRFENTI NIT+KIN YK+TMEFAIAN+NKP+KLS+MQA NKIA++Q+QL+EMG IN+E Sbjct: 721 IRFENTIQNITEKINSVYKMTMEFAIANHNKPVKLSSMQAHNKIAKLQNQLNEMGVINME 780 Query: 781 SIAEIADKQKRFDDINGEYESLQTAIKDLQTAIGEIDELACKEFDELIQKVNAELPKTFN 840 SIAEI++KQKRFDDIN EYES Q A+++LQ AI EIDE+A EFD+LIQK+N ELPKTF Sbjct: 781 SIAEISEKQKRFDDINAEYESAQQAVENLQKAITEIDEIASNEFDQLIQKLNQELPKTFK 840 Query: 841 YLFGGGSCQIRYTDTDNVLLSGIEVFANPPGKNVANLMLLSGGEKTLVALSVLFSILRVS 900 YLFGGGSCQIRYTD NVL+SGI+VFANPPGKN+ANLMLLSGGEKTLVALSVLFSIL+VS Sbjct: 841 YLFGGGSCQIRYTDPSNVLVSGIDVFANPPGKNIANLMLLSGGEKTLVALSVLFSILKVS 900 Query: 901 AFPLVILDEAESALDPANVERFANIIGNSSNNTQFLIITHRQGTMMKCDMLLGAAMQTKG 960 AFPLVILDEAESALDPANVERFANII +S NTQFLIITHRQGTMMKCDMLLGAAMQTKG Sbjct: 901 AFPLVILDEAESALDPANVERFANIIKTASKNTQFLIITHRQGTMMKCDMLLGAAMQTKG 960 Query: 961 VTKTFAVSLEKAEQYISKDKQN 982 VTKTFAV LE AE+Y+S++ N Sbjct: 961 VTKTFAVELENAEKYVSENDSN 982 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508166|ref|NP_110115.1| hydrolase/phosphatase [Mycoplasma pneumoniae M129] (290 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508167|ref|NP_110116.1| phosphotransacetylase [Mycoplasma pneumoniae M129] (320 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072966.1| phosphotransacetylase (pta) [Mycoplasma genital... 530 e-153 >ref|NP_072966.1| phosphotransacetylase (pta) [Mycoplasma genitalium G-37] Length = 320 Score = 530 bits (1366), Expect = e-153, Method: Compositional matrix adjust. Identities = 249/320 (77%), Positives = 279/320 (87%) Query: 1 MSVIDLLKQRVQSAGKKPVIIFPEGWSPTVMEAVNQLQQAGILTPPVIFRTRSEVPAGFN 60 MSVID+ K+R+Q+ KKPVIIFPEGWS +V++AV L ++ ++ P VIF R E+PA F+ Sbjct: 1 MSVIDIFKKRLQAVSKKPVIIFPEGWSASVLKAVEMLNESKLIQPAVIFHNRQEIPANFD 60 Query: 61 TAIKHYVIEEMDLTKYANFVYEKRKHKGMEMREAQKFVRDASSLAATLVALNEVDGEVCG 120 I HYVI+EMDLT YANFVYEKRKHKGM+++EAQKFVRD SSLAATLVAL VDGEVCG Sbjct: 61 KKITHYVIDEMDLTSYANFVYEKRKHKGMDLKEAQKFVRDPSSLAATLVALKVVDGEVCG 120 Query: 121 KEYATKDTLRPALQLLGTGNFVSSVFIMEKNEERLYFTDCAFAVYPSPQELAVVAENTFK 180 KEYATKDTLRPALQLL TGNFVSSVFIMEK EERLYFTDCAFAVYP+ QELA +AENTF Sbjct: 121 KEYATKDTLRPALQLLATGNFVSSVFIMEKGEERLYFTDCAFAVYPNSQELATIAENTFN 180 Query: 181 FAQSMGEPELKMVFLSYSTLGSGKGEAVDKVVSATQIFLEKHPELKANVCGELQFDSAFV 240 FA+S+ E E+KM FLSYSTLGSGKGE VDKVV AT++FLEKHPEL +VCGELQFD+AFV Sbjct: 181 FAKSLNEDEIKMAFLSYSTLGSGKGEMVDKVVLATKLFLEKHPELHQSVCGELQFDAAFV 240 Query: 241 EKVRKQKAPNLTWNGSANIYVFPNLDAGNIGYKIAQRLGGYEAIGPIVLGLARPFNDLSR 300 EKVR QKAP LTW SANIYVFPNLDAGNI YKIAQRLGGY+AIGPIVLGL+ P NDLSR Sbjct: 241 EKVRLQKAPQLTWKNSANIYVFPNLDAGNIAYKIAQRLGGYDAIGPIVLGLSSPVNDLSR 300 Query: 301 GASVSDVFNVGIITAAQTLK 320 GASVSD+FNVGIITAAQ +K Sbjct: 301 GASVSDIFNVGIITAAQAIK 320 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508168|ref|NP_110117.1| phosphoglycerate kinase [Mycoplasma pneumoniae M129] (409 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072967.1| phosphoglycerate kinase (pgk) [Mycoplasma genit... 561 e-162 >ref|NP_072967.1| phosphoglycerate kinase (pgk) [Mycoplasma genitalium G-37] Length = 416 Score = 561 bits (1447), Expect = e-162, Method: Compositional matrix adjust. Identities = 277/409 (67%), Positives = 327/409 (79%), Gaps = 1/409 (0%) Query: 1 MVDFKTVQAFDFQGKTVVLRADLNVPMKDGVITDNERILASLDTIKYLLGHNCKIVLLSH 60 M++FKT+QA DFQ KTVVLR+D NVPM +GVI+D+ERILA LDTIK+L+ NCKIVLLSH Sbjct: 6 MLNFKTLQAIDFQNKTVVLRSDFNVPMINGVISDSERILAGLDTIKFLVKKNCKIVLLSH 65 Query: 61 LSRVXXXX-XXXXXXXXQPVASALQNLLKNTKVHFCPENTGDKVKVAVNQLPLGEILVLE 119 LSR+ +PVA LQ LL KV F +NTG +VK V L GEIL+LE Sbjct: 66 LSRIKSLEDKLNNKKSLKPVAELLQQLLPTVKVQFSCKNTGAEVKQKVQALAFGEILLLE 125 Query: 120 NTRYCDVNEAGEVVKHESKNNAELAQFWASLGDIFVNDAFGTAHRRHASNAGIAKYIKNS 179 NTRYCDVN+ GE+VK ESKN+ ELA+FWASLG+IFVNDAFGTAHR+HASNAGIAKY+ S Sbjct: 126 NTRYCDVNDKGEIVKLESKNDPELAKFWASLGEIFVNDAFGTAHRKHASNAGIAKYVAKS 185 Query: 180 CIGLLMERELINLYRLINNPPKPFVVVLGGAKVSDKLQVVNNLFKIADHILIGGGMVNTF 239 CIG LME+EL NL LI +P KPFVVVLGGAKVSDKL+VV NL K+AD+ILIGGGMVNTF Sbjct: 186 CIGFLMEKELKNLSYLIQSPQKPFVVVLGGAKVSDKLKVVENLLKLADNILIGGGMVNTF 245 Query: 240 LKALGNEVGTSLVEEDLVQTAKQILDSDKDKKIVLGVDQMLHASFKDEPGVECVVAPQWP 299 LKA G SLVE++L+ AKQILD D KIVL +DQ++ + FKD+ G+ V+ + Sbjct: 246 LKAKGKATANSLVEKELIDVAKQILDKDTHNKIVLAIDQVMGSEFKDQTGITLDVSDKIQ 305 Query: 300 AELQGFMSLDVGSKTVALFSSYLAKAKTIFWNGPMGVFEFSNYAQGTLAIGKAIAQNQQA 359 + Q +MSLDVGSKT+ALF SYL AKTIFWNGP+GVFEF+N+A+GT IG+ IA+N+ A Sbjct: 306 EQYQSYMSLDVGSKTIALFESYLKTAKTIFWNGPLGVFEFTNFAKGTSKIGEIIAKNKTA 365 Query: 360 FSVIGGGDSAAAAKQLQIADQFSFISTGGGASLALIGGEELVGISDIQK 408 FSVIGGGDSAAA KQ+Q++DQFSFISTGGGASLALIGGEELVGISDIQK Sbjct: 366 FSVIGGGDSAAAVKQMQLSDQFSFISTGGGASLALIGGEELVGISDIQK 414 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508169|ref|NP_110118.1| glycerladehyde-3-phosphate dehydrogenase [Mycoplasma pneumoniae M129] (337 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072968.1| glyceraldehyde-3-phosphate dehydrogenase (gap) ... 592 e-171 >ref|NP_072968.1| glyceraldehyde-3-phosphate dehydrogenase (gap) [Mycoplasma genitalium G-37] Length = 337 Score = 592 bits (1525), Expect = e-171, Method: Compositional matrix adjust. Identities = 277/337 (82%), Positives = 313/337 (92%) Query: 1 MLAKSKTIRVAINGFGRIGRLVFRALLSQKNIEIVAVNDLTHPDTLAHLLKYDSAHGEFK 60 M AK++TI+VAINGFGRIGRLVFR+LLS+ N+E+VA+NDLT P+ LAHLLKYDSAHGE K Sbjct: 1 MAAKNRTIKVAINGFGRIGRLVFRSLLSKANVEVVAINDLTQPEVLAHLLKYDSAHGELK 60 Query: 61 KKVVAKDNTLMIDKKKVLVFSEKDPANLPWAEHNIDIVVESTGRFVSEEGASLHLQAGAK 120 +K+ K N L ID+KKV VFSEKDP NLPW EH+ID+V+ESTGRFVSEEGASLHL+AGAK Sbjct: 61 RKITVKQNILQIDRKKVYVFSEKDPQNLPWDEHDIDVVIESTGRFVSEEGASLHLKAGAK 120 Query: 121 RVIISAPAKQKTIKTVVYNVNHKIINAEDKIISAASCTTNCLAPMVHVLEKNFGILHGTM 180 RVIISAPAK+KTI+TVVYNVNHK I+++DKIISAASCTTNCLAP+VHVLEKNFGI++GTM Sbjct: 121 RVIISAPAKEKTIRTVVYNVNHKTISSDDKIISAASCTTNCLAPLVHVLEKNFGIVYGTM 180 Query: 181 VTVHAYTADQRLQDAPHSDLRRARAAACNIVPTTTGAAKAIGLVVPEATGKLNGMALRVP 240 +TVHAYTADQRLQDAPH+DLRRARAAA NIVPTTTGAAKAIGLVVPEA GKLNGM+LRVP Sbjct: 181 LTVHAYTADQRLQDAPHNDLRRARAAAVNIVPTTTGAAKAIGLVVPEANGKLNGMSLRVP 240 Query: 241 VLTGSIVELCVALEKDATVEQINQAMKKAASASFRYCEDEIVSSDIVGSEHGSIFDSKLT 300 VLTGSIVEL V LEK +VEQ+NQAMK+ ASASF+YCED IVSSD+V SE+GSIFDSKLT Sbjct: 241 VLTGSIVELSVVLEKSPSVEQVNQAMKRFASASFKYCEDPIVSSDVVSSEYGSIFDSKLT 300 Query: 301 NIIEVDGNKLYKVYAWYDNESSYVNQLVRVVNYCAKL 337 NI+EVDG KLYKVYAWYDNESSYV+QLVRVV+YCAKL Sbjct: 301 NIVEVDGMKLYKVYAWYDNESSYVHQLVRVVSYCAKL 337 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508170|ref|NP_110119.1| permease [Mycoplasma pneumoniae M129] (317 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072969.1| hypothetical protein MG302 [Mycoplasma genitali... 377 e-106 ref|NP_072844.1| hypothetical protein MG181 [Mycoplasma genitali... 68 1e-013 >ref|NP_072969.1| hypothetical protein MG302 [Mycoplasma genitalium G-37] Length = 317 Score = 377 bits (967), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/317 (59%), Positives = 228/317 (71%) Query: 1 MTSKNFLSQLPPVLKLWWWIISLVVAFLPLGLHGLIIINAIFFALVIVVERKLKTXXXXX 60 M +FL+++ P+LKLW+W+ISLVVAFLPLGL+GL+IIN +F LV++ E+++K+ Sbjct: 1 MQKTSFLNKIDPLLKLWFWLISLVVAFLPLGLYGLVIINLVFLTLVVISEKRVKSALIIL 60 Query: 61 XXXXXXXXXNIVVNGFIFLPNSSALASQNENFLGHFIYSGGEQFGGVSWWSVNTRSLLRS 120 N++VNGFIFLPN++ QN NFLG FIYSGG FGGVSWWS N RS LRS Sbjct: 61 SWMLFFLWFNVIVNGFIFLPNTALSVDQNHNFLGSFIYSGGNNFGGVSWWSFNLRSFLRS 120 Query: 121 LVIALRISMLFATSFLLTASTSIYELAFGVERLCTPLRYLKIKTQPLSILFALVFKLLPI 180 VIALRISMLF+ SFLLT S+SIYELA+ VER L+ IK QP+SIL A++FKLLP Sbjct: 121 FVIALRISMLFSASFLLTTSSSIYELAWAVERFFKFLKLFHIKVQPISILLAVIFKLLPT 180 Query: 181 VKGELKRIKQAQAIRGFKYGKLAFLNPVKLKTLFIPVLLSTVKKTEAVAFALQAKGYQLD 240 VK E+ RIKQAQA RGF Y K +FLNP K+KTLFIPVLLSTVKKTE AFALQAKGY L+ Sbjct: 181 VKSEIIRIKQAQATRGFIYNKCSFLNPFKIKTLFIPVLLSTVKKTETTAFALQAKGYDLN 240 Query: 241 NPNKTHYLQKYNXXXXXXXXXXXXXXXXXXMVNNWHLVYWTNPHYSFTFTHQNFCFFKQI 300 N N+THY KYN + NNW+LVYW NP+YSF F QNF F + I Sbjct: 241 NTNRTHYPLKYNLLNGVFLLVGLLLFSILLIANNWNLVYWENPNYSFNFDKQNFIFLRAI 300 Query: 301 SSPQLLAFWQLELLAIG 317 +S LL FWQ+EL+AIG Sbjct: 301 NSNNLLYFWQIELIAIG 317 >ref|NP_072844.1| hypothetical protein MG181 [Mycoplasma genitalium G-37] Length = 420 Score = 68.2 bits (165), Expect = 1e-013, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 75/128 (58%), Gaps = 9/128 (7%) Query: 118 LRSLVIALRIS------MLFATSFLLTASTSIYELAFGVERLCTPLRYLKIKTQPLSILF 171 LR++++A ++ +LFAT +LT+++S ELA+G+ERL PL+ +KI ++ Sbjct: 228 LRAVILAFYVTQKILIMILFAT--VLTSTSSSVELAYGIERLLWPLKLIKIPVNVFAMTI 285 Query: 172 ALVFKLLPIVKGELKRIKQAQAIRGFKYGKLAFLNPVK-LKTLFIPVLLSTVKKTEAVAF 230 A+ + +P + E +RI AQA RG + FL ++ L +L +P++ + +A Sbjct: 286 AIAIRFVPSLLLESQRILNAQASRGLDFRNGGFLVKMRSLSSLVVPMVSIAFRNASELAS 345 Query: 231 ALQAKGYQ 238 A++A+GY Sbjct: 346 AMEARGYH 353 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508171|ref|NP_110120.1| abc transport ATP-binding protein [Mycoplasma pneumoniae M129] (382 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasm... 417 e-118 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 139 7e-035 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 72 1e-014 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 71 2e-014 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 67 3e-013 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 61 2e-011 ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasm... 60 4e-011 >ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 357 Score = 417 bits (1071), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/350 (57%), Positives = 255/350 (72%) Query: 30 MQTPQIIWSLIAPQYRGLANKVNRKLIQSSIKHYFWYCKQFDKLVHPFYYLTAKKHTPLF 89 MQTPQI LI +Y A K N KL + K F + K+ DK+++PFY+L +KK P F Sbjct: 1 MQTPQIKLDLIEQKYHLQAQKANLKLAKLDSKKLFSFYKKVDKIINPFYFLNSKKSIPFF 60 Query: 90 NQQLVDLAQSTLYFYNLSVFVDKSNAGQIIKNVTGSVEPNQITVIFGPSGSGKTTLIKQL 149 N +L+++ Q L+F N+SVFV+K N GQIIK +G +EPN+ITVIFG SGSGKTTLIKQL Sbjct: 61 NSKLLNIEQDPLFFNNISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLIKQL 120 Query: 150 GLVENPTCGFLNCGNFYYFANQKHNRATKQFQNSIGYVLQKAEEQFLCDSVLEEVLTGAI 209 GL E P+ G++NC N+ YFANQ + TK F+ IGY+LQKAE+QF CDS+LEEVLTGA+ Sbjct: 121 GLFEKPSFGYINCANYCYFANQYQQKITKNFKQKIGYILQKAEDQFFCDSILEEVLTGAV 180 Query: 210 NLGLCQKGDVNFAKKYLEMCGLHHIPLIKNPLELSGGQKKRLALASVLAMQVQFLILDEP 269 NL LC K DVN+AKKYL++CGL +IPLIKNP+ELS GQKKRLALASVLAMQV+FLILDEP Sbjct: 181 NLKLCHKKDVNYAKKYLDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFLILDEP 240 Query: 270 TVGLDQEGXXXXXXXXXXXXXVTRIMIVSHDVDFIYETADSLIQLEAGQIVDQMSVADFF 329 TVGLDQ TRI+IVSHDVDFI+ETAD +I L G+I+ Q +V DFF Sbjct: 241 TVGLDQMAISNLSKMLVAMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQTTVNDFF 300 Query: 330 NNMQLLQRYEITPPLVVQTIQLLQAKGVQLNDPLAIKTVHDLIDQLKPLF 379 +N L +Y ITPP+++Q +++ KG+ + IK + DLI +LK LF Sbjct: 301 SNTSWLMQYGITPPVIIQAVKMFNEKGIAFKNQAEIKNLDDLISELKNLF 350 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 139 bits (349), Expect = 7e-035, Method: Compositional matrix adjust. Identities = 89/267 (33%), Positives = 140/267 (52%), Gaps = 3/267 (1%) Query: 97 AQSTLYFYNLS-VFVDKSNAG-QIIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVEN 154 A L +LS VF K+N ++I + + + + NQI I G SGSGK+TL+ + Sbjct: 13 ADEILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIK 72 Query: 155 PTCGFLNCGNFYYFANQKHNRATKQFQNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLC 214 P G + + Y A Q+ + K+ + +I V Q E Q D+V ++++ G + LG Sbjct: 73 PNQGDIWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQS 132 Query: 215 QKGDVNFAKKYLEMCGLHHIPLIKNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLD 274 + A YLEM GL + L +NP ELSGGQK+R+A+A +LA++ + LI DEPT GLD Sbjct: 133 KYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLD 192 Query: 275 QEGXXXXXXXXXXXXXVTR-IMIVSHDVDFIYETADSLIQLEAGQIVDQMSVADFFNNMQ 333 EG R + +++H ++ + E AD ++ L G++V S + F + Sbjct: 193 PEGEREMMQLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMDQT 252 Query: 334 LLQRYEITPPLVVQTIQLLQAKGVQLN 360 L++ I P V+Q I+ L A N Sbjct: 253 FLEKTTIVLPPVIQVIKDLIAINAHFN 279 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 71.6 bits (174), Expect = 1e-014, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 34/225 (15%) Query: 111 DKSNAGQIIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVENPTCGFLNCGNFYYFAN 170 D I+ +V+ + +I +I G SGSGKTTL+ +G ++ + G +C AN Sbjct: 97 DSKQEISILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLG--SC----IVAN 150 Query: 171 QKHNRATKQ-----FQNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQKGDVNFAKKY 225 + T + +N++GYV Q+ L E+L+ N+ + Q N KY Sbjct: 151 CPLEKCTSEQLLTYRKNNLGYVYQRYN--------LIELLSAYDNIAISQ----NLIPKY 198 Query: 226 LEMCGLHHIP--------LIKNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLDQEG 277 + + L K P E+SGGQK+R+A+A + + + L+ DEPT LD Sbjct: 199 QRRLDIEELAEKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNS 258 Query: 278 XXXXXXXXXXXXXVTR--IMIVSHDVDFIYETADSLIQLEAGQIV 320 + I++V+HDV A+ +I++ G+IV Sbjct: 259 AENIINLLQTINKTYKQTILMVTHDVSLT-RIANRIIKISDGKIV 302 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 70.9 bits (172), Expect = 2e-014, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 16/232 (6%) Query: 118 IIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVENPTCGFLNC-GNFYYFANQKHNRA 176 +I+ ++ SV + I G +GSGK+T+ K L + P G + G F N + R Sbjct: 23 LIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDNVSYLR- 81 Query: 177 TKQFQNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQ---KGDVNFAKKYLEMCGLHH 233 N+IG + Q + QF+ +V +++ G N + K ++ + G Sbjct: 82 -----NNIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQTDGF-- 134 Query: 234 IPLIKNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLDQEGXXXXXXXXXXXXXVTR 293 + + P LSGGQK+R+A+ASVLA+ +I DE T LD + + Sbjct: 135 --IKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGK 192 Query: 294 IMI-VSHDVDFIYETADSLIQLEAGQIVDQMSVADFFNNMQLLQRYEITPPL 344 +I ++HD++ + + AD ++ + G+++ Q + F + Q LQ+ + P Sbjct: 193 CVISITHDMEEVTK-ADKVLVMNEGKLIKQGKPVEVFTSEQELQKIRLDIPF 243 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 67.0 bits (162), Expect = 3e-013, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 8/219 (3%) Query: 117 QIIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVENPTCGFLNCGNFYYFANQKHNRA 176 Q++ ++ ++ N+IT + G SG GK+T I+ L + + G+ Y+ ++ Sbjct: 97 QVLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGI 156 Query: 177 TKQF--QNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQKGDVN-FAKKYLEMCGLH- 232 + S+G V QK S+ E + G G+ K +N ++ L L Sbjct: 157 INDLTLRTSVGMVFQKLTP--FNFSIFENIAYGIRAHGIHNKNAINEIVRQALISAALWD 214 Query: 233 --HIPLIKNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLDQEGXXXXXXXXXXXXX 290 L +N LSGGQ++RL +A +A+Q L++DEPT LD Sbjct: 215 EVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKE 274 Query: 291 VTRIMIVSHDVDFIYETADSLIQLEAGQIVDQMSVADFF 329 I+IV+H + D I G++++Q + F Sbjct: 275 KFTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQIF 313 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 61.2 bits (147), Expect = 2e-011, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 8/204 (3%) Query: 118 IIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVENPTCGFLNCGNFYYFANQKHNRAT 177 ++K V +++ + VI GPSGSGKTTL+ + ++ + G + N Y + T Sbjct: 251 VLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSV-IVNGYNMICLNDRKLT 309 Query: 178 KQFQNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQKGDVNFAKKYLEMCGLHHIPLI 237 K Q +GY+ Q+ L + + E + NL ++ LE G+ + Sbjct: 310 KFRQKYVGYIFQQY--GLLPNLTVRENIEIGANLQPDPSKRISI-DALLEAVGMDSLQK- 365 Query: 238 KNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLDQEGXXXXXXX--XXXXXXVTRIM 295 K P ELSGGQ++R+++A A + DEPT LD E T ++ Sbjct: 366 KLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMI 425 Query: 296 IVSHDVDFIYETADSLIQLEAGQI 319 IV+H+ + I AD +I + G+I Sbjct: 426 IVTHN-NLIANLADLVIYVADGKI 448 >ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length = 253 Score = 60.1 bits (144), Expect = 4e-011, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 19/216 (8%) Query: 134 IFGPSGSGKTTLIKQLGLVENPTCGFLNCGNFYYFANQKHNRATKQFQNSIGYVLQKAEE 193 + G +GSGK+TL+K LG GFL F N K T N IG +LQ + Sbjct: 17 VIGHNGSGKSTLVKLLG-------GFLKAKKGTIFFNDK--ELTSVGFNKIGILLQDPDV 67 Query: 194 QFLCDSVLEEVLTGAINLG-LCQKGD--VNFAKKYLEMCGLHHIPLIKNPLELSGGQKKR 250 Q L D++ +E++ N G L + D +N +E+ PL K LS G+K+R Sbjct: 68 QLLADTLHQELIFTLENHGVLASEMDKIINEVLTVVELKDKQFTPLKK----LSFGEKQR 123 Query: 251 LALASVLAMQVQFLILDEPTVGLDQE-GXXXXXXXXXXXXXVTRIMI-VSHDVDFIYETA 308 A +LA++ Q +LDE LD + +I+I ++HD + ++ A Sbjct: 124 AVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIVINITHDFNDLF-LA 182 Query: 309 DSLIQLEAGQIVDQMSVADFFNNMQLLQRYEITPPL 344 D +I L G ++ + + + + L + P Sbjct: 183 DEIIFLSKGSLIKKFAPEAIYEQLDLFHNHHFNLPF 218 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508172|ref|NP_110121.1| abc transport ATP-binding protein [Mycoplasma pneumoniae M129] (270 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasm... 343 1e-096 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 141 8e-036 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 90 2e-020 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 70 2e-014 ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasm... 69 6e-014 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 68 9e-014 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 64 2e-012 >ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length = 253 Score = 343 bits (879), Expect = 1e-096, Method: Compositional matrix adjust. Identities = 168/252 (66%), Positives = 203/252 (80%) Query: 19 LKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAPKQTIFFRGQPLEEVGFRQIGIL 78 L +++F+++ H+A+IGHNGSGKSTLVKLLGGFLKA K TIFF + L VGF +IGIL Sbjct: 2 LNQISFNVQDGCHLAVIGHNGSGKSTLVKLLGGFLKAKKGTIFFNDKELTSVGFNKIGIL 61 Query: 79 LQDPDMQLLGDTLHQELIFSLENHGVDPKQMDRVIADVLAVVELQGKQFTPLSKLSFGEK 138 LQDPD+QLL DTLHQELIF+LENHGV +MD++I +VL VVEL+ KQFTPL KLSFGEK Sbjct: 62 LQDPDVQLLADTLHQELIFTLENHGVLASEMDKIINEVLTVVELKDKQFTPLKKLSFGEK 121 Query: 139 QRAVFACLLAVKPELYLLDEAFSMLDGKLASKLKRFIFKVIKEQQKTVINVTHDFNDLFL 198 QRAVFACLLAVKP++YLLDEAFSMLD K+++KLK+F+F IK+Q K VIN+THDFNDLFL Sbjct: 122 QRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIVINITHDFNDLFL 181 Query: 199 ADEIIFLSKGQLLKQFSPAAIYKXXXXXXXXXXTLPFPWLLAHEVADHLHHEMKGPIEEL 258 ADEIIFLSKG L+K+F+P AIY+ LPFP LLAH+VA ++ + EL Sbjct: 182 ADEIIFLSKGSLIKKFAPEAIYEQLDLFHNHHFNLPFPLLLAHKVAKQINKKTPSLSFEL 241 Query: 259 QDVVDWICKHLK 270 DVV+WICKHLK Sbjct: 242 NDVVNWICKHLK 253 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 141 bits (355), Expect = 8e-036, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 138/242 (57%), Gaps = 7/242 (2%) Query: 6 NLSFTYPRHSQPALKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLK--APKQTIFFR 63 N++F+Y + P +++L+FS+ +V I+GHNGSGKST+ KLL G LK A + IF + Sbjct: 13 NVAFSY--NELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGK 70 Query: 64 GQPLEEVGF--RQIGILLQDPDMQLLGDTLHQELIFSLENHGVDPKQMDRVIADVLAVVE 121 + V + IGI+ Q+PD Q +G T+ ++ F LEN +++ +I +V + Sbjct: 71 TVDFDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQ 130 Query: 122 LQGKQFTPLSKLSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKLASKLKRFIFKVIKE 181 G LS G+KQR A +LA+ P + + DE+ +MLD K +K+F+ K+ K Sbjct: 131 TDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAK- 189 Query: 182 QQKTVINVTHDFNDLFLADEIIFLSKGQLLKQFSPAAIYKXXXXXXXXXXTLPFPWLLAH 241 Q K VI++THD ++ AD+++ +++G+L+KQ P ++ +PF L+ Sbjct: 190 QGKCVISITHDMEEVTKADKVLVMNEGKLIKQGKPVEVFTSEQELQKIRLDIPFSLSLST 249 Query: 242 EV 243 ++ Sbjct: 250 KI 251 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 90.1 bits (222), Expect = 2e-020, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 127/241 (52%), Gaps = 29/241 (12%) Query: 1 MLNVTNLSFTYPRHSQPALKKLN---FSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAPK 57 +L V++LS + + +K ++ ++ + N IIG +GSGKSTLV G +K P Sbjct: 16 ILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIK-PN 74 Query: 58 Q------TIFFRGQPLEEVGFRQ----IGILLQDPDMQLLGDTLHQELIF---SLENHGV 104 Q I+ + + F++ I I+ Q P+ QL DT+ ++++F +L Sbjct: 75 QGDIWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQSKY 134 Query: 105 DPKQMDRVIADVLAVVELQGKQFTPLSK----LSFGEKQRAVFACLLAVKPELYLLDEAF 160 D +Q +E+ G ++ L + LS G+K+R A +LA++PE+ + DE Sbjct: 135 DARQ------KAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPT 188 Query: 161 SMLDGKLASKLKRFIFKVIKEQQKTVINVTHDF-NDLFLADEIIFLSKGQLLKQFSPAAI 219 + LD + ++ + I K K+QQ+TV +TH N L +AD ++ L+KG+L+K SP + Sbjct: 189 AGLDPEGEREMMQLI-KTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEV 247 Query: 220 Y 220 + Sbjct: 248 F 248 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 70.5 bits (171), Expect = 2e-014, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 1/114 (0%) Query: 108 QMDRVIADVLAVVELQGKQFTPLSKLSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKL 167 + ++ ++DV+ +V L+GK+ +LS G KQR A L V+PE+ LLDE S LD K+ Sbjct: 323 EQNKKVSDVIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKV 382 Query: 168 ASKLKRFIFKVIKEQQKTVINVTHDFND-LFLADEIIFLSKGQLLKQFSPAAIY 220 L++ + ++ K+ T I VTHD + L L+D I+ +++G +L+ +P IY Sbjct: 383 RKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIY 436 >ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 357 Score = 68.9 bits (167), Expect = 6e-014, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 20/224 (8%) Query: 5 TNLSFTYPRHSQ-PALKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAP------K 57 N+S +H+ +K + ++PN I G +GSGK+TL+K LG F K Sbjct: 75 NNISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLIKQLGLFEKPSFGYINCA 134 Query: 58 QTIFFRGQPLEEV--GFRQ-IGILLQDPDMQLLGDTLHQELIFSLENHGVDPKQMDRVIA 114 +F Q +++ F+Q IG +LQ + Q D++ +E++ N + K + + Sbjct: 135 NYCYFANQYQQKITKNFKQKIGYILQKAEDQFFCDSILEEVLTGAVNLKLCHK---KDVN 191 Query: 115 DVLAVVELQGKQFTPLSK----LSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKLASK 170 ++L G + PL K LS G+K+R A +LA++ + +LDE LD S Sbjct: 192 YAKKYLDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFLILDEPTVGLDQMAISN 251 Query: 171 LKRFIFKVIKEQQKTVINVTHDFNDLF-LADEIIFLSKGQLLKQ 213 L + + V +Q ++ V+HD + +F AD+II L +G+++ Q Sbjct: 252 LSKML--VAMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQ 293 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 68.2 bits (165), Expect = 9e-014, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 115/234 (49%), Gaps = 22/234 (9%) Query: 4 VTNLSFTYPRHSQPALKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAPKQT---- 59 + N +F Y ++ Q L +N +K N A+IG +G GKST ++ L + T Sbjct: 85 IRNFNFWYNKNKQ-VLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTG 143 Query: 60 -IFFRGQPLE-----EVGFR-QIGILLQDPDMQLLGDTLHQELIFSLENHGVDPKQ-MDR 111 I+F G+ + ++ R +G++ Q + ++ + + + + HG+ K ++ Sbjct: 144 DIYFLGKNINSGIINDLTLRTSVGMVFQK--LTPFNFSIFENIAYGIRAHGIHNKNAINE 201 Query: 112 VIADVLAVV----ELQGKQFTPLSKLSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKL 167 ++ L E++ + LS G++QR A +A++P++ L+DE S LD + Sbjct: 202 IVRQALISAALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDS-I 260 Query: 168 ASKLKRFIFKVIKEQQKTVINVTHDF-NDLFLADEIIFLSKGQLLKQFSPAAIY 220 A+ + + +KE+ VI VTH + + DE IF + G++++Q + I+ Sbjct: 261 ATNSIELLIQQLKEKFTIVI-VTHSMAQTIRITDETIFFADGRVIEQGTTKQIF 313 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 63.5 bits (153), Expect = 2e-012, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 32 VAIIGHNGSGKSTLVKLLGGFLKAPKQTIFFRGQPLEEVGFRQIGILLQDPDMQLLGDTL 91 V I+G +GSGK+TL+ L+GG+ + PLE+ Q+ ++ LG Sbjct: 118 VIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLLTYRKNN----LGYVY 173 Query: 92 HQ----ELIFSLENHGVD----PKQMDRV-IADVLAVVELQGKQFTPLSKLSFGEKQRAV 142 + EL+ + +N + PK R+ I ++ ++++ + ++S G+KQR Sbjct: 174 QRYNLIELLSAYDNIAISQNLIPKYQRRLDIEELAEKLDIKEILYKFPYEMSGGQKQRVA 233 Query: 143 FACLLAVKPELYLLDEAFSMLDGKLASKLKRFIFKVIKEQQKTVINVTHDFNDLFLADEI 202 A + +P+L L DE LD A + + + K ++T++ VTHD + +A+ I Sbjct: 234 IARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYKQTILMVTHDVSLTRIANRI 293 Query: 203 IFLSKGQLLKQ 213 I +S G+++ Sbjct: 294 IKISDGKIVSN 304 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508173|ref|NP_110122.1| Molecular chaperone [Mycoplasma pneumoniae M129] (595 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072972.1| heat shock protein 70 (dnaK) [Mycoplasma genita... 1058 0.0 >ref|NP_072972.1| heat shock protein 70 (dnaK) [Mycoplasma genitalium G-37] Length = 595 Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/595 (90%), Positives = 559/595 (93%) Query: 1 MSTDNGLIIGIDLGTTNSCVSVMENGRPVVLENPEGKRTTPSIVSYKNNEIIVGDAAKRQ 60 MS DNGLIIGIDLGTTNSCVSVME GRPVVLENPEGKRTTPSIVSYKNNEIIVGDAAKRQ Sbjct: 1 MSADNGLIIGIDLGTTNSCVSVMEGGRPVVLENPEGKRTTPSIVSYKNNEIIVGDAAKRQ 60 Query: 61 MVTNPNTIVSIKRLMGTSNKVTVKNPDGSTKELTPEEVSAQILSYLKDYAEKKIGKTISR 120 MVTNPNTIVSIKRLMGTSNKV V+N DG+TKEL+PE+VSAQILSYLKD+AEKKIGK ISR Sbjct: 61 MVTNPNTIVSIKRLMGTSNKVKVQNADGTTKELSPEQVSAQILSYLKDFAEKKIGKKISR 120 Query: 121 AVITVPAYFNDAERNATKTAGKIAGLNVERIINEPTAAALAYGIDKSNREMKVLVYDLGG 180 AVITVPAYFNDAERNATKTAGKIAGLNVERIINEPTAAALAYGIDK++REMKVLVYDLGG Sbjct: 121 AVITVPAYFNDAERNATKTAGKIAGLNVERIINEPTAAALAYGIDKASREMKVLVYDLGG 180 Query: 181 GTFDVSLLDIAEGTFEVLATAGDNRLGGDDWDNKIIEFILAHIAQEHNGLNLSNDKMAMQ 240 GTFDVSLLDIAEGTFEVLATAGDNRLGGDDWDNKIIE+I A+IA+EH GLNLS DKMAMQ Sbjct: 181 GTFDVSLLDIAEGTFEVLATAGDNRLGGDDWDNKIIEYISAYIAKEHQGLNLSKDKMAMQ 240 Query: 241 RLKEAAERAKIELSAQLEAIISLPFLTVTEKGPVNVELKLTRAKFEEITKQLLERTRNPI 300 RLKEAAERAKIELSAQLE IISLPFLTVT+KGPVNVELKLTRAKFEE+TK LLERTRNPI Sbjct: 241 RLKEAAERAKIELSAQLETIISLPFLTVTQKGPVNVELKLTRAKFEELTKPLLERTRNPI 300 Query: 301 SDVLREAKIKPEEINEILLVGGSTRMPAVQKLVESMVPGHSPNRSINPDEVVAIGAAIQX 360 SDV++EAKIKPEEINEILLVGGSTRMPAVQKLVESMVPG PNRSINPDEVVAIGAAIQ Sbjct: 301 SDVIKEAKIKPEEINEILLVGGSTRMPAVQKLVESMVPGKKPNRSINPDEVVAIGAAIQG 360 Query: 361 XXXXXXXXXXXXXXXTPLTLSIETLGGVATPLIKRNTTIPVSKSQIFSTAQDNQESVDVV 420 TPLTLSIETLGGVATPLIKRNTTIPVSKSQIFSTAQDNQESVDVV Sbjct: 361 GVLRGDVKDVLLLDVTPLTLSIETLGGVATPLIKRNTTIPVSKSQIFSTAQDNQESVDVV 420 Query: 421 VCQGERPMARDNKSLGRFNLGGIQPAPKGKPQIEITFSLDANGILNVKAKDLTTQKENSI 480 VCQGERPM+RDNKSLGRFNLGGIQPAPKGKPQIEITFSLDANGILNVKAKDLTTQKENSI Sbjct: 421 VCQGERPMSRDNKSLGRFNLGGIQPAPKGKPQIEITFSLDANGILNVKAKDLTTQKENSI 480 Query: 481 TISDNGNLSEEEIQKMIRDAEANKERDNVIRERIELRNEGESIVSTIKEILQSPEAKDFP 540 TISDNGNLSEEEIQKMIRDAEANKERDN+IRERIELRNEGE IV+TIKEIL SP+AK+FP Sbjct: 481 TISDNGNLSEEEIQKMIRDAEANKERDNIIRERIELRNEGEGIVNTIKEILASPDAKNFP 540 Query: 541 KEEKEKLDKITGGIDAAIKANDYTKLKAEIENFKKWREEMAKKYNPNGDQGQPAQ 595 KEEKEKL+K+TG IDAAIKANDY KLK EIENFKKWREEMAKKYNP G+QG A+ Sbjct: 541 KEEKEKLEKLTGNIDAAIKANDYAKLKVEIENFKKWREEMAKKYNPTGEQGPQAK 595 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508174|ref|NP_110123.1| permease [Mycoplasma pneumoniae M129] (395 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072973.1| hypothetical protein MG306 [Mycoplasma genitali... 508 e-146 >ref|NP_072973.1| hypothetical protein MG306 [Mycoplasma genitalium G-37] Length = 393 Score = 508 bits (1309), Expect = e-146, Method: Compositional matrix adjust. Identities = 255/386 (66%), Positives = 292/386 (75%), Gaps = 2/386 (0%) Query: 1 MSTPKSASFFTRKNXXXXXXXXXXXXXXXXXXXXXXXDIKTGDVKTIINTINRTNWPWXX 60 M+ + +FF KN + DVKTII IN NW W Sbjct: 1 MAKLTTNTFFNTKNIVAFSFFLVFLIVISVIVTIFFLGVSVDDVKTIITAINYQNWGWIF 60 Query: 61 XXXXXXXXTLAWNIIINWWVARRFCFHAPWWEWVLFACVVQFFQIVTPLSLGQDPFRLYW 120 ++ WN+IINWWV+RRFCF+A WWEW+LF VVQFFQIVTPLSLGQDPFRLYW Sbjct: 61 VVILGFLVSVLWNVIINWWVSRRFCFYASWWEWLLFGFVVQFFQIVTPLSLGQDPFRLYW 120 Query: 121 FIKKGMKKQTAVLLVTSTGAFWNLAQALITWPSFFVLSQNYALLEQNHEGFVSYWFSFAG 180 FIKKGMKKQTAVL+VTSTGAFWNL+QALITWPSFFVLS+NY LL NH FVSYW S G Sbjct: 121 FIKKGMKKQTAVLIVTSTGAFWNLSQALITWPSFFVLSKNYQLLANNHNSFVSYWLSLTG 180 Query: 181 MIFDVVVAILFIFIAYSKRMHVLIYSGVNQFRKWIKRPYLTKEQIYQRFIDKAEFNKLYG 240 MIFDVVVAILFI IA++K+MHVLIYS VNQFRKW+KRPYLTKEQIYQRFI+KAEFNKLYG Sbjct: 181 MIFDVVVAILFIVIAFNKKMHVLIYSLVNQFRKWLKRPYLTKEQIYQRFIEKAEFNKLYG 240 Query: 241 LEIKRLGLTIFKLLANILIAVVGYFSVFAVFAIVKKENATNNVIDQYSTADIFNITNIAI 300 +E++R GLTIFKLLAN+++A+V YFS+F VF I K N TNNVIDQYS D+FNITNIA+ Sbjct: 241 IEMRRWGLTIFKLLANMVVAIVSYFSLFGVFMITKTVNTTNNVIDQYSLIDLFNITNIAV 300 Query: 301 TASNFIPVPSGEGATQFVMTSFLNAFKSAVG-IESQVKQGVFLWRFLSVYIPAILFSLCF 359 TASNFIPV SGEGATQFVMTSFLNAFK + Q+K GVFLWR LSVY+PAI +CF Sbjct: 301 TASNFIPVASGEGATQFVMTSFLNAFKPTDQFLHDQIKDGVFLWRLLSVYLPAIFTGICF 360 Query: 360 IGWVVQVVIEFKHPKPV-LPTVNLIN 384 + W+VQV+ EFK V L TVN ++ Sbjct: 361 VVWIVQVIWEFKKTVNVPLKTVNTVS 386 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508175|ref|NP_110124.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium [Mycoplasma pneumoniae M129] (1244 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] 1184 0.0 ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] 126 1e-030 ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] 98 4e-022 >ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1177 Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 646/1246 (51%), Positives = 838/1246 (67%), Gaps = 71/1246 (5%) Query: 1 MKKFLRKPQFWLLTLGGFLSTSVILAACATPSNSALQTVFKARSSQFFNGEQGSLQSALT 60 MKK L+K +FW L G LS S IL AC+TP+NSALQTVF S+ FF+G++GSL+ L Sbjct: 1 MKKLLKKSKFWWFLLCG-LSVSTILVACSTPTNSALQTVFSPTSTNFFHGQKGSLKEGLI 59 Query: 61 TALKNPVANKQFIAAPLLKALEAWYENNEDKKITQFLKDTKSNVDSQYTTAVDKVVSASR 120 TALK P ANK F+ PLLKALEAWYENNEDK I +FLKDTK NVD QY V+ ++S R Sbjct: 60 TALKTPSANKHFVIGPLLKALEAWYENNEDKAINKFLKDTKKNVDDQYKNTVNGLISPPR 119 Query: 121 NKSLFVQQDLLDNAGGSEATWKAQKLLEQLISDFASRVFQKNYLNYKKDGQVSTGPFTYD 180 N+++F+QQDLLD +GGSEA+WK+Q+L QLISDF +++F K++L YK +GQ+STGP+ YD Sbjct: 120 NRAVFIQQDLLDKSGGSEASWKSQQLFNQLISDFTAKLFAKDFLVYKPNGQLSTGPYIYD 179 Query: 181 ELHKEESWKNFEFSAPRFSETNDDFFAKIQSQVFDQWVEYTDPTLISQVNYKYSAPSQGL 240 EL + E WK+F F PRFSETND FAK+Q+Q+F+ WVEYTDPTLISQ +KY+AP QGL Sbjct: 180 ELSQPEKWKDFGFQEPRFSETNDALFAKLQAQIFNLWVEYTDPTLISQATFKYAAPQQGL 239 Query: 241 GQIYNREKLKDKLTPSYAFPFFAEEKDIAPNQNVGNKRWKQLVKGEGAITDNNIGQSGTN 300 GQ+YN EKLKDKLTPSYAFPFF ++ +I NQNVGNKRW+QL++ G+ G N Sbjct: 240 GQVYNTEKLKDKLTPSYAFPFFPKDGEIPQNQNVGNKRWEQLIE----------GKDGLN 289 Query: 301 SQKTGLLKYRNESNKGDFLDFPLNLSDTNETKQLVDASNIVDQXXXXXXXXXXXXXXQVF 360 + KTGL KY + N+G+ +DFP LSD +TKQ+VD+ NIVDQ + Sbjct: 290 TAKTGLEKYILDQNQGNLIDFPTTLSDNTQTKQIVDSLNIVDQLEAANLGASLNLKLDLL 349 Query: 361 EQDNDELPQIKELKEDLNNTIVVDKSKDVEKASKTNALFYNDQEGKQQQSDSDPIAGALD 420 QD D+LP IKEL ++LNNTIVV+ +K +E +K+N LF E S + + + Sbjct: 350 NQDKDQLPTIKELNKELNNTIVVESTK-IENHTKSNTLFC---EHNTTDSSQNNLKSLIK 405 Query: 421 DIFAQNTSEGTNLSKLAEQVXXXXXXXXXXXXXVLRTNNSKGQQNNYVVLDAAIPTFXXX 480 D F ++++ +NL KLA+Q+ ++ T S ++Y+V DAAIP Sbjct: 406 DAFI-SSNDSSNLGKLAKQI-----HQTTTSDMMVSTKASSSTTSSYLVWDAAIPNNKTN 459 Query: 481 XXXXXXXXXXXEVLVALKSGSINLRQVQQTDQNSYSPIKFRIVRNSTGVTVFGLDGGSYY 540 + S + VQ T NS + +K R+VRN GV V G+DGGSYY Sbjct: 460 NG------------ASTVSANCANATVQNTSHNSNNQLKLRLVRNGEGVAVIGIDGGSYY 507 Query: 541 LKQDSTNXXXXXXXXXXXXXXXXXXXXXXVLRDLDKQKQFLKFRAFQAKTNTFYSTNFAF 600 L ++S++ RD++KQKQFL +RAFQAKTNTF ++ ++F Sbjct: 508 LTKNSSSKTE---------------------RDIEKQKQFLMWRAFQAKTNTFKNSLYSF 546 Query: 601 SFPLNETLKSWFDKHRELILANALVNASLDQKDKASKALTEAFNPYKELIKEFAPVALAT 660 SFPLNETLK+WF+K++ELIL NAL+N +KDK S A+ +AFN YKEL+++FAPVALAT Sbjct: 547 SFPLNETLKTWFEKNQELILVNALINTDFQKKDKGSDAMQKAFNDYKELMQKFAPVALAT 606 Query: 661 TMISFYFDQMKALNNKLLERARNLNQNVNQANPTPWLNGLSAKLPYVNTNGNYEKLNNYF 720 +I F QM AL+NKL R LN NVNQ NPTPWLNGLS+ LPYV +G+YEKLNNYF Sbjct: 607 NVIRDLFLQMDALDNKLTSRTTELNTNVNQINPTPWLNGLSSHLPYVRKSGHYEKLNNYF 666 Query: 721 TFLITKTLWPKVGQEETSISEESNKLKTKTADVDKIRDKILENIQTKVNDFVKNKLKPAL 780 FLITKTLW KVG E+ +ISE +NKLKT ADVDKIRD+IL +I KV +FV N+LK Sbjct: 667 LFLITKTLWKKVGSEKINISENNNKLKTTKADVDKIRDEILSDINNKVTEFV-NQLKVTE 725 Query: 781 APRPAYSNVILLNVNNDKVLSSGANWSLASLLQSDKVNPLSFMLLKQAFDNNDLFKKAQK 840 +P +SN+IL+++NND+ L++ ANWSL +LL VNPLSF LLK AF +N F+KA+K Sbjct: 726 KSKPNFSNIILVDINNDQSLTNSANWSLNALLDVTTVNPLSFALLKNAFTSNQQFEKAKK 785 Query: 841 LFKDIQEKSSNNGGMQSSSTTNSDADALSKVIGNYYYTTWAKLTDKSIYGNPKDNKFDEL 900 LF++I+ K NG +SS+ SDAD+L+KVI NYYY TW+KLT+K++YGNP + DEL Sbjct: 786 LFEEIKSK---NGSSSTSSS--SDADSLAKVISNYYYMTWSKLTNKAMYGNPNNGNIDEL 840 Query: 901 FKLAFEASIDEKSFNVDYKAVIDHYRFIYTLQWLVDQKLKNFKSLLKTNLKFGEVAFIAY 960 FK AF S+DE FNV++KAVIDHYRFI+TLQWL++ LKNFK +L+ NLK+GE+A+IAY Sbjct: 841 FKKAFLESVDESGFNVNFKAVIDHYRFIFTLQWLIENNLKNFKDILQANLKYGEIAYIAY 900 Query: 961 -KNTETTNFSNPQGVFGSYFNYEN-SASEVKESTQTLDPNNFFYKTTTKPTVQAIQQVAS 1018 KN + N +NPQG+FGS FNYEN + + QT+DPNNFF+KT T P A+ Sbjct: 901 DKNIISNNTNNPQGIFGSVFNYENDEHATTANANQTIDPNNFFFKTKTSPNTTP----AT 956 Query: 1019 LALVQKQQMQQNSTDHYGFTGLXXXXXXMFDASSRDAILQQITKTSLQQYGSKDQLKKII 1078 L +Q + ++ YGFTGL M + ++ A+L I SL+QYGSKD LKK I Sbjct: 957 TMLSTRQAVSTSNNGTYGFTGLNTTNSSMLENNTNQALLNHIAANSLKQYGSKDDLKKFI 1016 Query: 1079 QGTNNQLLLDRIAVQLSGLNPSTTNGGSGKTIATYFQVDAVGNPTLDFQAKRKXXXXXXX 1138 T +QL+LD IA QLS L PS++ +GKT++ YFQVDA+ N LDF+AK+ Sbjct: 1017 SETKDQLVLDNIARQLSRLTPSSS-SSNGKTLSAYFQVDAINNSALDFKAKQALLLAVLD 1075 Query: 1139 QYQNYFGNGAQKSQRDSTPSGTGNYLTYQNGSDKYTYTQFTYQDIDXXXXXXXXGTNNKI 1198 QY +YF + S + + + G D Y Y QFT DID ++ I Sbjct: 1076 QYSSYFNSSNSPSISKRSTQTNQKFSEFNFGGDSYNYLQFTKSDIDSLSLT----SSTNI 1131 Query: 1199 ASDVVAALLLFQAADKGTQQLALSAINKPQLNIGDKRIESGLKLLK 1244 SD+VAAL+LFQA+D GTQQLALSAI KPQ IGDKRI+SGL LLK Sbjct: 1132 ESDIVAALVLFQASDTGTQQLALSAIEKPQFRIGDKRIQSGLNLLK 1177 >ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1225 Score = 126 bits (316), Expect = 1e-030, Method: Compositional matrix adjust. Identities = 101/352 (28%), Positives = 171/352 (48%), Gaps = 38/352 (10%) Query: 1 MKKFLRKPQFWLLTLGGFLSTSVILAACATPSNSALQTVFKARSSQFFNGEQGSLQSALT 60 MK+FL + ++ LL +S ++ ACA P++ ++ +F+ SS F + GS+ + L Sbjct: 1 MKRFLHRVKWPLLLSSIAVSLGIVAVACAQPNSRTIENLFRP-SSAFTDKNDGSINATLY 59 Query: 61 TALKNPVANKQFIAAPLLKALEAWYENNEDKKITQFLKDTKSNVDSQYTTAVDKVVSASR 120 AL+N Q++ L L +YE N D I + L+ ++ D+ + + + R Sbjct: 60 KALENREGLTQYLTMRLAPVLRNFYEENVDDDIKRNLRTFNTDTDNSFVNQEQNLRNQYR 119 Query: 121 NKSLF-VQQDLLDNAGGSEATWKAQKLLEQLISDFASRVFQKNYLNY--KKDGQVSTGPF 177 L +Q D+LDN GG++A WK + + +++ DF +++F KN++ Y K G +ST P Sbjct: 120 GDYLVRLQTDILDNTGGNQANWKLRDVNNKIVDDFINKLFTKNFVEYVDKSVGVLST-PL 178 Query: 178 TYDELHKEESWKNFEFSA------PRFSETNDDFFAKIQSQVFDQWVEYTDPTLISQVNY 231 + + +W N + A R ND +A IQ ++ DQ+V +P L+S+V + Sbjct: 179 K-GLIENQSNWNNIKIQAKFVDKNKRLRINNDAVYAAIQDKLLDQFVTNENPNLVSRVVF 237 Query: 232 KYSAPSQGLGQIYNREKLKDKLTPSYAFPFFAEEKDIAPNQNVGNKRWKQLVKGEGAITD 291 P+ G +N + +K TPSY F F NK +Q D Sbjct: 238 TNETPNDGFDNYFNPDLIKSP-TPSYQFQVF-------------NKYNQQ---------D 274 Query: 292 NNI-GQSGTNSQKTGLLKYRNESNKGDFLDFPLNLSDTNETKQLVDASNIVD 342 N+I G +G + + L Y N +NK +D P S + K L+ AS++ D Sbjct: 275 NSIKGANGFHILASNLQSYVNTNNKT--IDIPNKFSSDSGGKLLLKASDMFD 324 Score = 104 bits (260), Expect = 4e-024, Method: Compositional matrix adjust. Identities = 129/476 (27%), Positives = 203/476 (42%), Gaps = 106/476 (22%) Query: 522 IVRNSTGVTVFGLDGGSYYLKQDSTNXXXXXXXXXXXXXXXXXXXXXXVLRDLDKQKQFL 581 + R G+ + G+DGG YYL + RD++KQKQFL Sbjct: 453 LARGKDGIHLMGVDGGGYYLSESG--------------------------RDVNKQKQFL 486 Query: 582 KFRAFQAKTNTFYSTNFAFSFPLNETLKSWFDKHRELILANALVNA---------SLDQK 632 FRA Q K TN + F L + +K FDK+R L L NAL S Q Sbjct: 487 LFRALQTKYG-LIDTNTTYDFKLFDEVKKHFDKNRVLFLFNALFKLVDSKESNFLSFPQF 545 Query: 633 DKASKALTEAFNPYKELIKE------FAPVALATTMISFYFDQMKALNNKLLERARNLNQ 686 K S ++ N K+L++ F VA A ++ KL ER + Sbjct: 546 KKFSDSIITVKNELKDLVESQYQQIVFNEVATAENKVAL----------KLAERNQPFID 595 Query: 687 NVNQANPTPWLNGLSAKLPYV--NTNGNYEKLNNYFTFLITKTLWPKVGQEETSISEESN 744 N + N W+NGL+A LPY + G+Y +L Y+ +I K S S S+ Sbjct: 596 N--ERNKQIWMNGLAAVLPYEQDSKTGHYNELGIYYKDIIDKVSSNTSNSNSNSNSSSSD 653 Query: 745 KLKTKTADVDKIRDKILENIQTKVNDFVKN--KLKPALAPRPAYSNVILLNV---NNDKV 799 K I DK+ EN + K+ +LK ++ P P YS +IL++ ++ + Sbjct: 654 PFSKK------IIDKLKENKKKVEAAVKKHVDELKVSVIPSPQYSQIILVDTKLSSDPRN 707 Query: 800 LSSGANWSLASLLQSDKVNPLSFMLLKQAFDNNDLFKKAQKL----FKDIQEKSSNNGGM 855 S N +L ++L SD+ L + + F N+D FK+A L FK+ ++ N + Sbjct: 708 TSLALNLALNAVLSSDE---LQNTIRRDYFVNDDQFKQAIDLDKLTFKNWNSLNNENWNI 764 Query: 856 QSSSTTNSDADALSKVIGNYYYTTWAKLTDKSIYGN-----PKDNK------FDELFKLA 904 + Y + + K + SI+GN DNK D L+ Sbjct: 765 FKYT---------------YLFDLFQKQANPSIFGNGVNESSTDNKPKINGVLDSLYN-- 807 Query: 905 FEASIDEKSFNVDYKAVIDHYRFIYTLQWLVDQKLKNFKSLLKTNLKFGEVAFIAY 960 +++E+ +D +I++Y ++YT+QWL+ LKN K L+ L +F+ + Sbjct: 808 -SLNLEER---LDSNDLINYYSYLYTVQWLLKDNLKNLKQDLQAKLSRTTNSFLVW 859 >ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1271 Score = 98.2 bits (243), Expect = 4e-022, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 6/257 (2%) Query: 11 WLLTLGGF--LSTSVILAACATPSNSALQTVFKARSSQFFNGEQGSLQS--ALTTALKNP 66 W L F + + I+ AC+T + + L +Q + L +AL + Sbjct: 8 WSLIALAFSGVGATAIITACSTINTANLFPTLNRSQKLIGFSDQNIINPDVVLKSALNDG 67 Query: 67 VANKQFIAAPLLKALEAWYENNEDKKITQFLKDTKSNVDSQYTTAVDKVVSASRNKSLFV 126 + AL+ WY+ N D+ I+ LK + NV+ ++ +D+ A R K Sbjct: 68 SGVDSILRVSFGSALQKWYQANADRNISNRLKIFEENVEDEHDNLIDEKKRADRVKWPIE 127 Query: 127 QQDLLDNAGGSEATWKAQKLLEQLISDFASRVFQKNYLNYKKDGQVSTGPFTYDELHKEE 186 Q D GG++ +WK KL ++LI+DF S +F N T T E + E+ Sbjct: 128 VQKEYDQFGGNQESWKKLKLYDRLITDFQSLIFNNISANVSLVNSSDTSVATTKE-NIEK 186 Query: 187 SWKNFEFSAPRFSETNDDFFAKIQSQVFDQWVEYTDPTLISQVNYKYSAPSQGLGQIYNR 246 + +F ++ N DFF +Q+ +F QW+ +P L++Q ++ Y +P GLG IY+ Sbjct: 187 TENKLKFINSNLNDVNGDFFTNLQAYLFSQWLIEENPFLLNQASFNYQSPIAGLGSIYDE 246 Query: 247 EKL-KDKLTPSYAFPFF 262 + L SY FP F Sbjct: 247 NAIGASNLNLSYNFPAF 263 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508176|ref|NP_110125.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium [Mycoplasma pneumoniae M129] (572 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] 523 e-150 ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] 68 2e-013 >ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1177 Score = 523 bits (1346), Expect = e-150, Method: Compositional matrix adjust. Identities = 293/573 (51%), Positives = 388/573 (67%), Gaps = 25/573 (4%) Query: 1 MINFLFNQMNALNNKFLERAKALNQNVNQANPTPWLNGLSAKLPYVRTNGNYEKLNNYFT 60 +I LF QM+AL+NK R LN NVNQ NPTPWLNGLS+ LPYVR +G+YEKLNNYF Sbjct: 608 VIRDLFLQMDALDNKLTSRTTELNTNVNQINPTPWLNGLSSHLPYVRKSGHYEKLNNYFL 667 Query: 61 FLIVKYMWKKVGNEDASLSKDSSINKLKTKTEDVNKIRDKILEDIQKKVQEFVKNKLKPT 120 FLI K +WKKVG+E ++S+++ NKLKT DV+KIRD+IL DI KV EFV N+LK T Sbjct: 668 FLITKTLWKKVGSEKINISENN--NKLKTTKADVDKIRDEILSDINNKVTEFV-NQLKVT 724 Query: 121 LAPRQTYSNVILLNVNNDKVWSMGANWALANLLDTSKINPLSFMLLKQTFDQNDLFKKAK 180 + +SN+IL+++NND+ + ANW+L LLD + +NPLSF LLK F N F+KAK Sbjct: 725 EKSKPNFSNIILVDINNDQSLTNSANWSLNALLDVTTVNPLSFALLKNAFTSNQQFEKAK 784 Query: 181 KLFEDIQSKTNXXXXXXXXXXXXXXXEGADALSKVIGNYYYNSWAKLTDKSIYGNPKDNK 240 KLFE+I+SK AD+L+KVI NYYY +W+KLT+K++YGNP + Sbjct: 785 KLFEEIKSKNGSSSTSSS--------SDADSLAKVISNYYYMTWSKLTNKAMYGNPNNGN 836 Query: 241 FDDLFKLAFEDSINEKSFNVDYKAVIEHYRFIYTLEWLVNGNLKNFKDLLKANLKFGEIA 300 D+LFK AF +S++E FNV++KAVI+HYRFI+TL+WL+ NLKNFKD+L+ANLK+GEIA Sbjct: 837 IDELFKKAFLESVDESGFNVNFKAVIDHYRFIFTLQWLIENNLKNFKDILQANLKYGEIA 896 Query: 301 FIAY-KNTETKEFSNPQGVFGSAFNYENETNEVKI-AAQNLDPNNFFYKTTTKPEEVKTA 358 +IAY KN + +NPQG+FGS FNYEN+ + A Q +DPNNFF+KT T P Sbjct: 897 YIAYDKNIISNNTNNPQGIFGSVFNYENDEHATTANANQTIDPNNFFFKTKTSPNTTP-- 954 Query: 359 QNGASMMVMQQKMQSTMQDSNHYGFTGLNTSTSSMLGAATQQAILDQITKNSLQQYGSQQ 418 +M+ +Q + ++ ++ YGFTGLNT+ SSML T QA+L+ I NSL+QYGS+ Sbjct: 955 --ATTMLSTRQAVSTS--NNGTYGFTGLNTTNSSMLENNTNQALLNHIAANSLKQYGSKD 1010 Query: 419 ELKTLIEKTNNQLLLDRIASQLSGLNPXXXXXXXXXXXXXIATYFQLDAIGNPTLSFQQK 478 +LK I +T +QL+LD IA QLS L P ++ YFQ+DAI N L F+ K Sbjct: 1011 DLKKFISETKDQLVLDNIARQLSRLTP----SSSSSNGKTLSAYFQVDAINNSALDFKAK 1066 Query: 479 RKLLLDVLDQYKDFFGTNTQAAQRDSGKGGHGSYSTYQDGSDKITYLQFSYKDIDNLSLS 538 + LLL VLDQY +F ++ + + +S + G D YLQF+ DID+LSL+ Sbjct: 1067 QALLLAVLDQYSSYFNSSNSPSISKRSTQTNQKFSEFNFGGDSYNYLQFTKSDIDSLSLT 1126 Query: 539 DKGNSKLASDVVAALLLFQAADKGTQQLALSAI 571 N + SD+VAAL+LFQA+D GTQQLALSAI Sbjct: 1127 SSTN--IESDIVAALVLFQASDTGTQQLALSAI 1157 >ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1271 Score = 68.2 bits (165), Expect = 2e-013, Method: Compositional matrix adjust. Identities = 92/378 (24%), Positives = 152/378 (40%), Gaps = 76/378 (20%) Query: 243 DLFKLAFEDSINEKSFNVDYKAVIEHYRFIYTLEWLVNGNLKNFKDLLKANLKFGEIAFI 302 DL K AFE + + + + +YK + RF+ L WLV +N+K+LL+ + G AF+ Sbjct: 878 DLAKKAFEKELEDPNQDAEYK----YMRFLQALMWLVKNGAQNYKNLLQQAIPIGTRAFV 933 Query: 303 AY------------------------KNTETKEFSNPQGVFGSAFNYENETNEVKIAAQN 338 ++ +N + NP GS N+ N+ + I + Sbjct: 934 SWTVGYDKNPSATVSQKTKSSTSSANENPFNRFLQNPNYTQGSEINWFNDK-QTPIQPDS 992 Query: 339 LDPNNFFYKTTTKPEEVKTAQNGASMMVMQQKMQSTMQDSNHYGFTGL----NTSTSSML 394 L + Y+ T +P A + K Q + YGF GL N S S+ Sbjct: 993 LLESENTYRFTDEPFNNSVA--------LSNKSQGSSDKKYFYGFNGLTINSNQSISTAS 1044 Query: 395 GAATQ-------QAILDQITKNSLQQYGSQQELKTLIEKTNNQLLLDRIASQLSGLNPXX 447 TQ Q I +L QY + L +LI KT++ L+ L Sbjct: 1045 AGLTQQLFNNYGQLITATDKAGALSQYKDKFTLWSLINKTSSDAELNAFGELL------- 1097 Query: 448 XXXXXXXXXXXIATYFQLDAIGNPTLSFQQKRKLLLDVLDQYKDFF--------GTNTQA 499 + ++ G P +SF K+K LL+V+D+ D + G + A Sbjct: 1098 ----HRSVNVDTNNLSRFNSRGEPLISFDNKKKFLLNVVDRLDDLYFHKFEGYVGLSKAA 1153 Query: 500 AQRDSGKGGHGSYSTYQDGSDK----ITY-LQFSYKDIDNLSLSDKGNSK----LASDVV 550 S G+ + T +D ++Y +Q + D++ +S + K N L ++ Sbjct: 1154 NTDGSNTEGYKTVQTVPLTNDSSIQTLSYVIQITNDDVNKISSNWKNNKANSLGLKKEIF 1213 Query: 551 AALLLFQAADKGTQQLAL 568 +LL+ QA D+GTQ+LA Sbjct: 1214 MSLLIEQALDEGTQELAF 1231 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508177|ref|NP_110126.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium [Mycoplasma pneumoniae M129] (345 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] 160 1e-041 >ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1177 Score = 160 bits (406), Expect = 1e-041, Method: Compositional matrix adjust. Identities = 111/296 (37%), Positives = 158/296 (53%), Gaps = 49/296 (16%) Query: 4 PFFAEEKDIPENQNVGNKRWKKLIXXXXXXXXXXXXXXXXXXXXXTKGLFGWRGDTSSGN 63 PFF ++ +IP+NQNVGNKRW++LI GL + D + GN Sbjct: 259 PFFPKDGEIPQNQNVGNKRWEQLIEGKDGLNTAKT------------GLEKYILDQNQGN 306 Query: 64 LFDFPNTLTDVGETKQIVDATTIVDQLEAADLGAALNLKLSFLKQDFDELPVIKKLPDNL 123 L DFP TL+D +TKQIVD+ IVDQLEAA+LGA+LNLKL L QD D+LP IK+L L Sbjct: 307 LIDFPTTLSDNTQTKQIVDSLNIVDQLEAANLGASLNLKLDLLNQDKDQLPTIKELNKEL 366 Query: 124 NDTIVAKSDNLEKTSKTNSTFYKDNGDSSEKQGSAESKNSPKTQLKEIFNGQNGDSGNLG 183 N+TIV +S +E +K+N+ F + N S S+N+ K+ +K+ F N DS NLG Sbjct: 367 NNTIVVESTKIENHTKSNTLFCEHNTTDS-------SQNNLKSLIKDAFISSN-DSSNLG 418 Query: 184 KLAEQLQKTDSTKMEARSQTWQLRNAVSLKTTNMAQSDENYLLLDAAIPAFEXXXXXXXX 243 KLA+Q+ +T ++ M + T + + +YL+ DAAIP Sbjct: 419 KLAKQIHQTTTSDM-------------MVSTKASSSTTSSYLVWDAAIP----------- 454 Query: 244 XXXXXXXXALVNLTSTSVNLTQQKSSTTPLNQ---RIVRNSTGVKLLALEGLLYYV 296 +++ N T Q +S NQ R+VRN GV ++ ++G YY+ Sbjct: 455 --NNKTNNGASTVSANCANATVQNTSHNSNNQLKLRLVRNGEGVAVIGIDGGSYYL 508 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508178|ref|NP_110127.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium, : MPN436 [Mycoplasma pneumoniae M129] (237 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] 280 1e-077 ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] 103 1e-024 ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] 78 9e-017 >ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1177 Score = 280 bits (715), Expect = 1e-077, Method: Compositional matrix adjust. Identities = 129/236 (54%), Positives = 172/236 (72%), Gaps = 1/236 (0%) Query: 1 MKSFLRKPKFWXXXXXXXXXXXXXXXACATPSNSALQAVFKPTSNQFFNGEHGTIQSALN 60 MK L+K KFW AC+TP+NSALQ VF PTS FF+G+ G+++ L Sbjct: 1 MKKLLKKSKFWWFLLCGLSVSTILV-ACSTPTNSALQTVFSPTSTNFFHGQKGSLKEGLI 59 Query: 61 TALRDPETNKKFVAAPLLKALEAWYENNQDKNITQFLKDTKTNVDNQYKTVVDKVVSAPR 120 TAL+ P NK FV PLLKALEAWYENN+DK I +FLKDTK NVD+QYK V+ ++S PR Sbjct: 60 TALKTPSANKHFVIGPLLKALEAWYENNEDKAINKFLKDTKKNVDDQYKNTVNGLISPPR 119 Query: 121 NKSLFVQQDLLDSSGGSEATWKARKLFEQLISDFASRVFQKNYLSYKENGKVSAGPFLYD 180 N+++F+QQDLLD SGGSEA+WK+++LF QLISDF +++F K++L YK NG++S GP++YD Sbjct: 120 NRAVFIQQDLLDKSGGSEASWKSQQLFNQLISDFTAKLFAKDFLVYKPNGQLSTGPYIYD 179 Query: 181 TISKNSNWQNIVFDAVNFPETNDDFFAKIQSEVFDQWAEYTDPTIISSVTLKYSAP 236 +S+ W++ F F ETND FAK+Q+++F+ W EYTDPT+IS T KY+AP Sbjct: 180 ELSQPEKWKDFGFQEPRFSETNDALFAKLQAQIFNLWVEYTDPTLISQATFKYAAP 235 >ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1225 Score = 103 bits (258), Expect = 1e-024, Method: Compositional matrix adjust. Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 8/244 (3%) Query: 1 MKSFLRKPKFWXXXXXXXXXXXXXXXACATPSNSALQAVFKPTSNQFFNGEHGTIQSALN 60 MK FL + K+ ACA P++ ++ +F+P+S F + G+I + L Sbjct: 1 MKRFLHRVKWPLLLSSIAVSLGIVAVACAQPNSRTIENLFRPSS-AFTDKNDGSINATLY 59 Query: 61 TALRDPETNKKFVAAPLLKALEAWYENNQDKNITQFLKDTKTNVDNQYKTVVDKVVSAPR 120 AL + E +++ L L +YE N D +I + L+ T+ DN + + + R Sbjct: 60 KALENREGLTQYLTMRLAPVLRNFYEENVDDDIKRNLRTFNTDTDNSFVNQEQNLRNQYR 119 Query: 121 NKSLF-VQQDLLDSSGGSEATWKARKLFEQLISDFASRVFQKNYLSYKENGKVSAGPFLY 179 L +Q D+LD++GG++A WK R + +++ DF +++F KN++ Y + L Sbjct: 120 GDYLVRLQTDILDNTGGNQANWKLRDVNNKIVDDFINKLFTKNFVEYVDKSVGVLSTPLK 179 Query: 180 DTISKNSNWQNIVFDA------VNFPETNDDFFAKIQSEVFDQWAEYTDPTIISSVTLKY 233 I SNW NI A ND +A IQ ++ DQ+ +P ++S V Sbjct: 180 GLIENQSNWNNIKIQAKFVDKNKRLRINNDAVYAAIQDKLLDQFVTNENPNLVSRVVFTN 239 Query: 234 SAPN 237 PN Sbjct: 240 ETPN 243 >ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1271 Score = 77.8 bits (190), Expect = 9e-017, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 7/182 (3%) Query: 58 ALNTALRDPETNKKFVAAPLLKALEAWYENNQDKNITQFLKDTKTNVDNQYKTVVDKVVS 117 L +AL D + AL+ WY+ N D+NI+ LK + NV++++ ++D+ Sbjct: 59 VLKSALNDGSGVDSILRVSFGSALQKWYQANADRNISNRLKIFEENVEDEHDNLIDEKKR 118 Query: 118 APRNKSLFVQQDLLDSSGGSEATWKARKLFEQLISDFASRVFQKNYLSYK---ENGKVSA 174 A R K Q D GG++ +WK KL+++LI+DF S +F N +S N ++ Sbjct: 119 ADRVKWPIEVQKEYDQFGGNQESWKKLKLYDRLITDFQSLIF--NNISANVSLVNSSDTS 176 Query: 175 GPFLYDTISKNSNWQNIVFDAVNFPETNDDFFAKIQSEVFDQWAEYTDPTIISSVTLKYS 234 + I K N + F N + N DFF +Q+ +F QW +P +++ + Y Sbjct: 177 VATTKENIEKTEN--KLKFINSNLNDVNGDFFTNLQAYLFSQWLIEENPFLLNQASFNYQ 234 Query: 235 AP 236 +P Sbjct: 235 SP 236 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508179|ref|NP_110128.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium [Mycoplasma pneumoniae M129] (726 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] 570 e-164 ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] 77 4e-016 >ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1177 Score = 570 bits (1470), Expect = e-164, Method: Compositional matrix adjust. Identities = 333/725 (45%), Positives = 432/725 (59%), Gaps = 24/725 (3%) Query: 4 QGETKDQYNTFGLRLVRNSVGVSVLGLDGFVKFIKXXXXXXXXXXXXAKKIDKEEQKKFL 63 Q + + N LRLVRN GV+V+G+DG ++ D E+QK+FL Sbjct: 475 QNTSHNSNNQLKLRLVRNGEGVAVIGIDGGSYYLTKNSSSKTER-------DIEKQKQFL 527 Query: 64 KFRAFQAKIGTFYNTNFAFSFPLNETLKGWFDKHRGLILANALVKVTLDTKEKASKALVD 123 +RAFQAK TF N+ ++FSFPLNETLK WF+K++ LIL NAL+ K+K S A+ Sbjct: 528 MWRAFQAKTNTFKNSLYSFSFPLNETLKTWFEKNQELILVNALINTDFQKKDKGSDAMQK 587 Query: 124 AFSSYKNWLSEYTPVGLATTMISFYFDQMKALNNKLLERVRSLNQNVNQANPTPWLNGLS 183 AF+ YK + ++ PV LAT +I F QM AL+NKL R LN NVNQ NPTPWLNGLS Sbjct: 588 AFNDYKELMQKFAPVALATNVIRDLFLQMDALDNKLTSRTTELNTNVNQINPTPWLNGLS 647 Query: 184 AKLPYVNTNGNYEKLNNYFTFLITKVLWPKVGTEDTNVXXXXXXXXXXXXDVNKIREKIL 243 + LPYV +G+YEKLNNYF FLITK LW KVG+E N+ DV+KIR++IL Sbjct: 648 SHLPYVRKSGHYEKLNNYFLFLITKTLWKKVGSEKINISENNNKLKTTKADVDKIRDEIL 707 Query: 244 NNIDSKLKTFVQKLKPTLAPRPAYSNVILLNINNDKVWSAGANWSLAVLLDPKKVNPLSF 303 ++I++K+ FV +LK T +P +SN+IL++INND+ + ANWSL LLD VNPLSF Sbjct: 708 SDINNKVTEFVNQLKVTEKSKPNFSNIILVDINNDQSLTNSANWSLNALLDVTTVNPLSF 767 Query: 304 MLLKQMFDQNSLFKKAKTLFENIQNXXXXXXXXXXXXXXNDDADALSKVIGNYYYNTWAK 363 LLK F N F+KAK LFE I++ AD+L+KVI NYYY TW+K Sbjct: 768 ALLKNAFTSNQQFEKAKKLFEEIKSKNGSSSTSSSSD-----ADSLAKVISNYYYMTWSK 822 Query: 364 LTDKSIYGNXXXXXXXXXXXXXXXSSINEKSFNVDYKAVIEHYRFIYTLEWXXXXXXXXX 423 LT+K++YGN S++E FNV++KAVI+HYRFI+TL+W Sbjct: 823 LTNKAMYGNPNNGNIDELFKKAFLESVDESGFNVNFKAVIDHYRFIFTLQWLIENNLKNF 882 Query: 424 XXXXXXXXXXGEIAFIAY-KNTETQNFSNPQGIFGSYFNYENETNAAKS-ATQIIDPNSF 481 GEIA+IAY KN + N +NPQGIFGS FNYEN+ +A + A Q IDPN+F Sbjct: 883 KDILQANLKYGEIAYIAYDKNIISNNTNNPQGIFGSVFNYENDEHATTANANQTIDPNNF 942 Query: 482 FYKTTTKPEAKTTQSANTAXXXXXXXXXXXXXXSYXXXXXXXXXXXXXXAATQQAILDQI 541 F+KT T P + T +Y T QA+L+ I Sbjct: 943 FFKTKTSPNT----TPATTMLSTRQAVSTSNNGTYGFTGLNTTNSSMLENNTNQALLNHI 998 Query: 542 TKTSLQQYGSQADLKKIIGETKNQLLLDRIANQLIALKPNTSGNSGTQKTIAAYFQTDAV 601 SL+QYGS+ DLKK I ETK+QL+LD IA QL L P++S ++G KT++AYFQ DA+ Sbjct: 999 AANSLKQYGSKDDLKKFISETKDQLVLDNIARQLSRLTPSSSSSNG--KTLSAYFQVDAI 1056 Query: 602 GNPTLDFKAKQKLLLDVLDQYKDFFGNNAQAVQRDSGKSGTGNYLTYTDGSDKITYLQFS 661 N LDFKAKQ LLL VLDQY +F ++ + + G D YLQF+ Sbjct: 1057 NNSALDFKAKQALLLAVLDQYSSYFNSSNSPSISKRSTQTNQKFSEFNFGGDSYNYLQFT 1116 Query: 662 YKDIDXXXXXXXXXXXXKFASDVVAALLLFQAAYKGTQQLALSSINKPQLPIGDKRIKTG 721 DID SD+VAAL+LFQA+ GTQQLALS+I KPQ IGDKRI++G Sbjct: 1117 KSDID----SLSLTSSTNIESDIVAALVLFQASDTGTQQLALSAIEKPQFRIGDKRIQSG 1172 Query: 722 IDLLK 726 ++LLK Sbjct: 1173 LNLLK 1177 >ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1225 Score = 77.4 bits (189), Expect = 4e-016, Method: Compositional matrix adjust. Identities = 85/296 (28%), Positives = 137/296 (46%), Gaps = 34/296 (11%) Query: 8 KDQYNTFGLRLVRNSVGVSVLGLDGFVKFIKXXXXXXXXXXXXAKKIDKEEQKKFLKFRA 67 KD + L L R G+ ++G+DG ++ D +QK+FL FRA Sbjct: 443 KDNNSQPDLILARGKDGIHLMGVDGGGYYLSESGR------------DVNKQKQFLLFRA 490 Query: 68 FQAKIGTFYNTNFAFSFPLNETLKGWFDKHRGLILANALVKVTLDTKEK------ASKAL 121 Q K G +TN + F L + +K FDK+R L L NAL K+ +D+KE K Sbjct: 491 LQTKYG-LIDTNTTYDFKLFDEVKKHFDKNRVLFLFNALFKL-VDSKESNFLSFPQFKKF 548 Query: 122 VDAFSSYKNWLSEYTPVGLATTMISFYFDQMKALNNKLLERVRSLNQNV--NQANPTPWL 179 D+ + KN L + + + F+++ NK+ ++ NQ N+ N W+ Sbjct: 549 SDSIITVKNELKDL----VESQYQQIVFNEVATAENKVALKLAERNQPFIDNERNKQIWM 604 Query: 180 NGLSAKLPYVNTN--GNYEKLNNYFTFLITKVLWPKVGTEDTNVXXXXXXXXXXXXDVNK 237 NGL+A LPY + G+Y +L Y+ +I KV + + D K Sbjct: 605 NGLAAVLPYEQDSKTGHYNELGIYYKDIIDKVSSNTSNSNSNSNSSSSDPFSKKIID--K 662 Query: 238 IREKILNNIDSKLKTFVQKLKPTLAPRPAYSNVILLNINNDKVWSAGANWSLAVLL 293 ++E +++ +K V +LK ++ P P YS +IL++ K+ S N SLA+ L Sbjct: 663 LKENKK-KVEAAVKKHVDELKVSVIPSPQYSQIILVDT---KLSSDPRNTSLALNL 714 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508180|ref|NP_110129.1| hypothetical protein MPN441 [Mycoplasma pneumoniae M129] (102 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508181|ref|NP_110130.1| species specific lipoprotein [Mycoplasma pneumoniae M129] (150 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] 171 3e-045 >ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1177 Score = 171 bits (433), Expect = 3e-045, Method: Compositional matrix adjust. Identities = 82/136 (60%), Positives = 103/136 (75%), Gaps = 1/136 (0%) Query: 1 MKKLLIKPQFWFLTLGGFISSSVILVACATPSNSALQTVFKARSNQFFNGEQGSLQNALA 60 MKKLL K +FW+ L G +S S ILVAC+TP+NSALQTVF S FF+G++GSL+ L Sbjct: 1 MKKLLKKSKFWWFLLCG-LSVSTILVACSTPTNSALQTVFSPTSTNFFHGQKGSLKEGLI 59 Query: 61 TALKDPEANKQFVAAPLLKALTAWYENNQDKQVTQFFKDTKKSVDEQYNQAVDKVVSASR 120 TALK P ANK FV PLLKAL AWYENN+DK + +F KDTKK+VD+QY V+ ++S R Sbjct: 60 TALKTPSANKHFVIGPLLKALEAWYENNEDKAINKFLKDTKKNVDDQYKNTVNGLISPPR 119 Query: 121 NKNLFVQQDLLDSAGG 136 N+ +F+QQDLLD +GG Sbjct: 120 NRAVFIQQDLLDKSGG 135 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508182|ref|NP_110131.1| RNA helicase, eIF4-A translation initiation factor [Mycoplasma pneumoniae M129] (409 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072975.1| ATP-dependent RNA helicase, putative [Mycoplasm... 459 e-131 ref|NP_073096.1| ATP-dependent RNA helicase (deaD) [Mycoplasma g... 95 1e-021 >ref|NP_072975.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length = 410 Score = 459 bits (1182), Expect = e-131, Method: Compositional matrix adjust. Identities = 241/410 (58%), Positives = 301/410 (73%), Gaps = 1/410 (0%) Query: 1 MHFIQPLQAFLQTKHIVEFSSIQQAVFKVWPRQNVVGIAETGSGKTFAYLLPALNQIDVT 60 M F ++ FL K IVEF+ IQQAVFK+WP QN++GIAETGSGKTFAYLLP L++I+ + Sbjct: 1 MQFSSSIRQFLDKKRIVEFTKIQQAVFKLWPFQNIIGIAETGSGKTFAYLLPLLDKINTS 60 Query: 61 LNKPQAVVFVPTKELKWQILTILNDIKASFTGLKVSENFNSNAHLIVSLIGKDIILHETI 120 L++PQAV+FVPTKEL+WQI+ IL +IK F + +F+S A LIVSL+ + + + Sbjct: 61 LDQPQAVIFVPTKELQWQIINILTEIKKYFKTFTFATSFSSKAQLIVSLLNEKYLFTSKV 120 Query: 121 KYVVFDEVDMFLEDSSQAEWINCVQLFQKHKPHFGFFSATLFNEQLQQIRKQVAPLTVVN 180 +YVVFDE+DMFLE SS +W+ CV LFQK KP F FFSATLFN+QLQ I+KQV V+N Sbjct: 121 RYVVFDEIDMFLEQSSIQQWLECVHLFQKAKPLFAFFSATLFNQQLQIIKKQVINTKVIN 180 Query: 181 QKKRAWKHSLVKHFLLNLNGQEPFAGLLALLNYHHNEQVLVFCSNAKSLKQLTSLLAHNQ 240 + W H LVKHF+++LN + F+GLLALL +H N+Q++VFCSN KSLKQLT LL++N Sbjct: 181 LHPKQWIHPLVKHFVVHLNTENRFSGLLALLKHHQNQQIIVFCSNQKSLKQLTQLLSNNN 240 Query: 241 LSFKSLHGQLTPNERKHIFTSAANNTVRVLVVSDLLARGIDLPHFSVVISWDLPLVDSFY 300 +SF S++G LT ERK+ FT A NN +++LVVSDL +RGIDL +FSVVISWDLP +DSFY Sbjct: 241 ISFGSIYGSLTYQERKNNFTKATNNKLKLLVVSDLFSRGIDLNYFSVVISWDLPKIDSFY 300 Query: 301 IHRSGRVARFNSWGNSYVFDLPHNQHKLTKFAHKGILFNSVHLERDGTLKF-PQLKQSKQ 359 IHRSGRVAR NSWG SY+F NQ KL K KGI F +V L +G LKF + Q Sbjct: 301 IHRSGRVARLNSWGRSYLFWNDQNQSKLNKLIAKGIKFQNVSLTSNGDLKFLTENNQKTT 360 Query: 360 KPAVSSELKTAIKRIKAGYKKVKPNYKKRQKQQIAELFAKRKQRRSWKNF 409 K +S+ IK IKA YKKVKPNYKK QKQQI L +K+ RSWKNF Sbjct: 361 KKPLSTLQIKKIKAIKAKYKKVKPNYKKYQKQQIQNLLINKKKPRSWKNF 410 >ref|NP_073096.1| ATP-dependent RNA helicase (deaD) [Mycoplasma genitalium G-37] Length = 449 Score = 95.1 bits (235), Expect = 1e-021, Method: Compositional matrix adjust. Identities = 104/427 (24%), Positives = 183/427 (42%), Gaps = 42/427 (9%) Query: 5 QPLQAFLQTKHIVEFSSIQQ-AVFKVWPRQNVVGIAETGSGKTFAYLLPALNQI---DVT 60 Q L L HI + + IQQ ++ + +N++ + TG+GKT A+ +P + ++ D T Sbjct: 12 QTLIETLNALHINKPTKIQQISIPQFLSEKNLIVHSPTGTGKTAAFAIPIIEKLLKEDQT 71 Query: 61 LNKPQAVVFVPTKELKWQILTILNDIK-----------ASFTGLKVSENFNSNAHLIVSL 109 KP +V PT+EL QI T ++I K + +N +IV Sbjct: 72 A-KP-TLVIAPTRELVEQIKTTFSNIAKNKKLRIISLIGGVPAWKQIKKIKTNPQIIVGT 129 Query: 110 IGKDIILHE-------TIKYVVFDEVDMFLEDSSQAEWINCVQLFQKHKPHFGFFSATLF 162 +G+ + L E +++++ DEVD+ L+ + + N ++ K +SA+ + Sbjct: 130 MGRIMDLLERKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNLLEQINSFK-QIAVYSAS-Y 187 Query: 163 NEQLQQIRKQVAPLTVV------NQKKRAWKHSLVKHFLLNLNGQEPFAGLLALLNYHHN 216 N++ I KQ+ + N+ L+K F+ L + L +L+ Sbjct: 188 NQEAINIAKQITNNGIFIGSPEFNKDANTNNDKLIKQFVCYLFSDQKKQALYSLIKTAQV 247 Query: 217 EQVLVFCSNAKSLKQLTSLLAHNQLSFKSLHG---QLTPNERKHIFTSAANNTVRVLVVS 273 + ++VFC K + L L N+L +LHG Q IF + T+ LV + Sbjct: 248 KSIIVFCDTKKLVDDLHVFLRKNELRTFALHGDKKQFIRERNLKIFANTKQPTI--LVTT 305 Query: 274 DLLARGIDLPHFSVVISWDLPLVDSFYIHRSGRVARFNSWGNSYVFDLPHNQHKLTKFAH 333 DL+ RGI + +VI++ L YI+R GR R N G F + K Sbjct: 306 DLIGRGIHVEAIDMVINYSACLNLEAYINRMGRTGRNNHKGTCVTFCTSQEKKVFLKMVE 365 Query: 334 KGILFNSVHLERDGTLKFPQLKQSKQKPAVSSELKTAIKRIKAGYKKVKPNYKKRQKQQI 393 K I N + + +K LK A + + ++ ++ Y KP + ++ Sbjct: 366 K-ITDNRIAECKQMEIKLIPLKNK----AKTKKGGISLDCVQKIYANAKPYDRNKRVPLA 420 Query: 394 AELFAKR 400 ++LF R Sbjct: 421 SDLFKSR 427 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508183|ref|NP_110132.1| hypothetical protein MPN444 [Mycoplasma pneumoniae M129] (1325 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] 1372 0.0 ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] 125 2e-030 ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] 74 1e-014 >ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1225 Score = 1372 bits (3551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 734/1331 (55%), Positives = 894/1331 (67%), Gaps = 112/1331 (8%) Query: 1 MHTFTRKVKWPFMFTAIGLTFGIVAVACAQPTASTVEGLFKPSSAFADRTDFSLSSILQK 60 M F +VKWP + ++I ++ GIVAVACAQP + T+E LF+PSSAF D+ D S+++ L K Sbjct: 1 MKRFLHRVKWPLLLSSIAVSLGIVAVACAQPNSRTIENLFRPSSAFTDKNDGSINATLYK 60 Query: 61 SLINRESFNQYLAMRLAPVLRTFYEDNYDTDIKERLNGFTADTDNAFVSQEQNLRNQFRE 120 +L NRE QYL MRLAPVLR FYE+N D DIK L F DTDN+FV+QEQNLRNQ+R Sbjct: 61 ALENREGLTQYLTMRLAPVLRNFYEENVDDDIKRNLRTFNTDTDNSFVNQEQNLRNQYRG 120 Query: 121 NYLVHLQTDIFDNTGGNQAAWKLRDVNNKIIDDFISRIFAKNFVEYVQDGVGPLTKPTKS 180 +YLV LQTDI DNTGGNQA WKLRDVNNKI+DDFI+++F KNFVEYV VG L+ P K Sbjct: 121 DYLVRLQTDILDNTGGNQANWKLRDVNNKIVDDFINKLFTKNFVEYVDKSVGVLSTPLKG 180 Query: 181 LIENTSNFKNIKLQPKFVNKNAKLKINNDAVYAAIQDKLLDQFITNENPNLVSRVVFTNE 240 LIEN SN+ NIK+Q KFV+KN +L+INNDAVYAAIQDKLLDQF+TNENPNLVSRVVFTNE Sbjct: 181 LIENQSNWNNIKIQAKFVDKNKRLRINNDAVYAAIQDKLLDQFVTNENPNLVSRVVFTNE 240 Query: 241 TPVDGFDNYFNTKVIQSPTPSYQFQVFNKYNQQSGGTKGANGFNLLASNLKSYKNDQSKG 300 TP DGFDNYFN +I+SPTPSYQFQVFNKYNQQ KGANGF++LASNL+SY N +K Sbjct: 241 TPNDGFDNYFNPDLIKSPTPSYQFQVFNKYNQQDNSIKGANGFHILASNLQSYVNTNNKT 300 Query: 301 IDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGADSKEVDSLIKDK 360 IDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGA+ E L KDK Sbjct: 301 IDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGAEQTEYTKLEKDK 360 Query: 361 SIIENFFVDNNTQXXXXXXXXXXXXEGTIQLKTASDGGGTTQSTVHKTDLVKIFGDK--- 417 SIIENFFV+NN+ S + +TVHKTDL KIF + Sbjct: 361 SIIENFFVENNSAKA----------------AMKSASSSSQTTTVHKTDLAKIFKENETT 404 Query: 418 ---DVFAGEYKQQIGNTNANQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVVDLIEV 474 DVF GEY+++ N + A+VDL E+ Sbjct: 405 KSTDVFKGEYQKKFSNATS-----------------------TSNSDSSNNSAIVDLKEL 441 Query: 475 KKDSSSQPDYILSRGKDGIHLMAVDGGSHYLTESGRDVAKQKKFLLFRALQTKYGLVDTD 534 KKD++SQPD IL+RGKDGIHLM VDGG +YL+ESGRDV KQK+FLLFRALQTKYGL+DT+ Sbjct: 442 KKDNNSQPDLILARGKDGIHLMGVDGGGYYLSESGRDVNKQKQFLLFRALQTKYGLIDTN 501 Query: 535 TTYDFKLFDEVKKYFDTNRILFLFEALLDLSSDTNNKDNFLSYPQFKKFADSIKSIEKDL 594 TTYDFKLFDEVKK+FD NR+LFLF AL L + NFLS+PQFKKF+DSI +++ +L Sbjct: 502 TTYDFKLFDEVKKHFDKNRVLFLFNALFKLVDSK--ESNFLSFPQFKKFSDSIITVKNEL 559 Query: 595 KELVQAHYKQAVFNETAVAENKVTLKLAERNQPFIDNERNNQIEQNGLAAKLPYEQDAKT 654 K+LV++ Y+Q VFNE A AENKV LKLAERNQPFIDNERN QI NGLAA LPYEQD+KT Sbjct: 560 KDLVESQYQQIVFNEVATAENKVALKLAERNQPFIDNERNKQIWMNGLAAVLPYEQDSKT 619 Query: 655 GHYNDLGNYYKDIIDNVDXXXXXXXXXXXXXXGQTKNFSEEVVSKLKDNXXXXXXXXXXX 714 GHYN+LG YYKDIID V FS++++ KLK+N Sbjct: 620 GHYNELGIYYKDIIDKVSSNTSNSNSNSNSSSSDP--FSKKIIDKLKENKKKVEAAVKKH 677 Query: 715 XXXXXXFTIPSPLYSQVILVQTKLSFTPESTSLGLNLALNNYLTSTELQNSIKLSYFQED 774 IPSP YSQ+ILV TKLS P +TSL LNLALN L+S ELQN+I+ YF D Sbjct: 678 VDELKVSVIPSPQYSQIILVDTKLSSDPRNTSLALNLALNAVLSSDELQNTIRRDYFVND 737 Query: 775 EAFKKIIDITNLTFSQQSXXXXXXXXXXXLTADNWKIFKETYLLDLFESQAQKSIFGHVG 834 + FK+ ID+ LTF + L +NW IFK TYL DLF+ QA SIFG+ G Sbjct: 738 DQFKQAIDLDKLTFKNWN----------SLNNENWNIFKYTYLFDLFQKQANPSIFGN-G 786 Query: 835 SSDKNSSTKTGIEGVLDTLYSSLNLEERLDSDDVIDYLSYLYTAHWLLKDNLKNYKQSLQ 894 ++ ++ K I GVLD+LY+SLNLEERLDS+D+I+Y SYLYT WLLKDNLKN KQ LQ Sbjct: 787 VNESSTDNKPKINGVLDSLYNSLNLEERLDSNDLINYYSYLYTVQWLLKDNLKNLKQDLQ 846 Query: 895 SKLSRTSNAFLVWSVDSEKNKNDXXXXXXXXXXXXXXXGLIQLRSVVSLAQNQAAGQGGD 954 +KLSRT+N+FLVWS+ S+K++N+ +V +A N A+ Sbjct: 847 AKLSRTTNSFLVWSLASDKDRNNTASQAMSVSSSK--------SVLVKMANNVAS----Q 894 Query: 955 NNSDITQTEVKNPNFVFGSSVYDWTNSKTPEVNRAADDXXXXXXXXXXXXXXXXXXXXXX 1014 N D T+ E +NPN+VFGSS Y+WTN+KTP VN AA+D Sbjct: 895 TNQDFTKQEQQNPNYVFGSSAYNWTNNKTPTVNSAANDISSLYYTKNNGSSSTSL----- 949 Query: 1015 VLRSLNQASGMTTKTAKNRYGFRGIVTSSTSGSLPEAVSRRLFKQFVNQTEKGVKVGGQM 1074 +L Q S T + R+GF GIVT+++S +LP+AV RLF FV+Q+EK GGQ Sbjct: 950 ---TLMQKSAQQTNNQQRRFGFHGIVTNTSSNNLPDAVRNRLFTSFVSQSEKSSSNGGQA 1006 Query: 1075 LITTAKSGKATLVLKQQADDAESTTNNAYKGALFSFGSMDNLKNIINGIQTQTEFDALYN 1134 + + +S + + YKGALFSFGS+ L I+ I TQ EFDALYN Sbjct: 1007 QLQSTQSSGSNETI--------------YKGALFSFGSLTKLIETIDNIPTQAEFDALYN 1052 Query: 1135 HLTSDLNIDVTGVDKNKTLTEQKTSLTSFVDSNFKQSTQSAQRGDTSARSARSATVQIKK 1194 HLTS+LNI+VTGVD++K+L EQKT+L +F +SNF + TVQ+K+ Sbjct: 1053 HLTSNLNINVTGVDRSKSLQEQKTNLKNFANSNFN----------------NTQTVQLKQ 1096 Query: 1195 TQEDNQNTNYKDVFSRFDGYIGDNKVEEKNYTSYQFLSDGGKYHATFVKQVNLDDVEKIG 1254 Q N+N+ DVFSRF+GYIG NK NY+SY FL D YHA + KQ+NL+DV +G Sbjct: 1097 AQSKTNNSNFNDVFSRFEGYIGTNKTS--NYSSYNFLQDNQIYHAVYAKQINLEDVSMLG 1154 Query: 1255 TDSLKQEDSSKDKRLNLSXXXXXXXXXXXXXDPNNQTQAINALISGNKKGLVKVGDFRIF 1314 +DSL DS+ KRL+LS +PNNQTQAINALI+ K GLV+VGD R+F Sbjct: 1155 SDSLNSTDSNNSKRLDLSLEEFLSTVALEALNPNNQTQAINALIANAKNGLVRVGDNRLF 1214 Query: 1315 SSISAQWVRRF 1325 S+IS+QWVR+F Sbjct: 1215 SAISSQWVRKF 1225 >ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1177 Score = 125 bits (314), Expect = 2e-030, Method: Compositional matrix adjust. Identities = 111/403 (27%), Positives = 191/403 (47%), Gaps = 51/403 (12%) Query: 1 MHTFTRKVK-WPFMFTAIGLTFGIVAVACAQPTASTVEGLFKPSSA-FADRTDFSLSSIL 58 M +K K W F+ GL+ + VAC+ PT S ++ +F P+S F SL L Sbjct: 1 MKKLLKKSKFWWFLL--CGLSVSTILVACSTPTNSALQTVFSPTSTNFFHGQKGSLKEGL 58 Query: 59 QKSLINRESFNQYLAMRLAPVLRTFYEDNYDTDIKERLNGFTADTDNAFVSQEQNLRNQF 118 +L + ++ L L +YE+N D I N F DT Q +N N Sbjct: 59 ITALKTPSANKHFVIGPLLKALEAWYENNEDKAI----NKFLKDTKKNVDDQYKNTVNGL 114 Query: 119 ---RENYLVHLQTDIFDNTGGNQAAWKLRDVNNKIIDDFISRIFAKNFVEYVQDG---VG 172 N V +Q D+ D +GG++A+WK + + N++I DF +++FAK+F+ Y +G G Sbjct: 115 ISPPRNRAVFIQQDLLDKSGGSEASWKSQQLFNQLISDFTAKLFAKDFLVYKPNGQLSTG 174 Query: 173 P-----LTKPTKSLIENTSNFKNIKLQ-PKFVNKNAKLKINNDAVYAAIQDKLLDQFITN 226 P L++P K +K+ Q P+F NDA++A +Q ++ + ++ Sbjct: 175 PYIYDELSQPEK--------WKDFGFQEPRFSE-------TNDALFAKLQAQIFNLWVEY 219 Query: 227 ENPNLVSRVVFTNETPVDGFDNYFNTKVIQSP-TPSYQFQVFNK-----YNQQSGGTK-- 278 +P L+S+ F P G +NT+ ++ TPSY F F K NQ G + Sbjct: 220 TDPTLISQATFKYAAPQQGLGQVYNTEKLKDKLTPSYAFPFFPKDGEIPQNQNVGNKRWE 279 Query: 279 ----GANGFNLLASNLKSYKNDQSKG--IDIPNKFSSDSGGKLLLKASDMFDTFDPSFSA 332 G +G N + L+ Y DQ++G ID P S ++ K ++ + ++ D + + Sbjct: 280 QLIEGKDGLNTAKTGLEKYILDQNQGNLIDFPTTLSDNTQTKQIVDSLNIVDQLEAANLG 339 Query: 333 AFIQGYLAL--QKKSKGADSKEVDSLIKDKSIIENFFVDNNTQ 373 A + L L Q K + KE++ + + ++E+ ++N+T+ Sbjct: 340 ASLNLKLDLLNQDKDQLPTIKELNKELNNTIVVESTKIENHTK 382 >ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1271 Score = 73.6 bits (179), Expect = 1e-014, Method: Compositional matrix adjust. Identities = 81/359 (22%), Positives = 151/359 (42%), Gaps = 34/359 (9%) Query: 2 HTFTRKVKWPFMFTAIGLTFGIVAVACAQ-----PTASTVEGLFKPSSAFADRTDFSLSS 56 H F R F+ +G T I A + PT + + L F+D+ + Sbjct: 3 HRFKRWSLIALAFSGVGATAIITACSTINTANLFPTLNRSQKLI----GFSDQNIINPDV 58 Query: 57 ILQKSLINRESFNQYLAMRLAPVLRTFYEDNYDTDIKERLNGFTADTDNAFVSQEQNLRN 116 +L+ +L + + L + L+ +Y+ N D +I RL F + ++ + + Sbjct: 59 VLKSALNDGSGVDSILRVSFGSALQKWYQANADRNISNRLKIFEENVEDEHDNLIDEKKR 118 Query: 117 QFRENYLVHLQTDIFDNTGGNQAAWKLRDVNNKIIDDFISRIFAKNFVEYVQDGVGPLTK 176 R + + +Q + +D GGNQ +WK + +++I DF S IF + V + Sbjct: 119 ADRVKWPIEVQKE-YDQFGGNQESWKKLKLYDRLITDFQSLIFNN-----ISANVSLVNS 172 Query: 177 PTKSLIENTSNFKNIKLQPKFVNKNAKLKINNDAVYAAIQDKLLDQFITNENPNLVSRVV 236 S+ N + + + KF+N N +N D + +Q L Q++ ENP L+++ Sbjct: 173 SDTSVATTKENIEKTENKLKFINSNLN-DVNGD-FFTNLQAYLFSQWLIEENPFLLNQAS 230 Query: 237 FTNETPVDGFDNYFNTKVIQSP--TPSYQFQVFNKYNQQSGGTKGANGFNLLASNLKSYK 294 F ++P+ G + ++ I + SY F F ++ G T A F L++ Sbjct: 231 FNYQSPIAGLGSIYDENAIGASNLNLSYNFPAFQDPSESGGQTNSAKLFEEFDKQLQTAN 290 Query: 295 -----------NDQSKGIDIPNKFSSDSGGKLLLKASDMFDTFDP-SFSAAFIQGYLAL 341 N ++ +D NK+S+ K+L+ +++ + SAA I Y L Sbjct: 291 SSGSSQSSAATNTRNDLLDFENKYSA---SKVLISKNNILSVLKTVNLSAAVIDQYHYL 346 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508184|ref|NP_110133.1| triacylglycerol lipase (lip) 3 [Mycoplasma pneumoniae M129] (289 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072977.1| lipase/esterase, putative [Mycoplasma genitaliu... 342 2e-096 ref|NP_072996.1| lipase/esterase, putative [Mycoplasma genitaliu... 77 2e-016 >ref|NP_072977.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length = 268 Score = 342 bits (878), Expect = 2e-096, Method: Compositional matrix adjust. Identities = 155/263 (58%), Positives = 206/263 (78%) Query: 21 MRLEIENGLEFVCDPFLNERGKIFFLHAFTGNITNKLSFRTHFKDYSFYGINFPGHGNSV 80 MRLEIENGLEFV DP +NE GKI F H FTGN+TNKLSFR+HF YSFY IN+PGHGNSV Sbjct: 1 MRLEIENGLEFVNDPVVNELGKICFFHPFTGNLTNKLSFRSHFNRYSFYAINYPGHGNSV 60 Query: 81 IHNQSELDFNFWIKLVQQFFNKYQLKNVVLFGHSIGGGLAIALTQVLTKEQIKGIILEAP 140 I+N +L+F++W+++ +QFF+K+ LK+V+LFGHSIGGGLA+ALT L+ +Q K ++LEAP Sbjct: 61 INNPKQLEFSYWLEITKQFFDKHNLKDVILFGHSIGGGLAVALTNYLSSDQYKAVLLEAP 120 Query: 141 LNPGIRATPPSIISALVPDTNEDFEAVQRALIYNIEQRFGANFKDFCAKQKQKMIQKYAP 200 LNP I TP +I+ L+PD + DF +Q+ L+YNIE++ GANFK++C ++KQK I + Sbjct: 121 LNPAIVETPLNIVQNLIPDPDSDFAVIQKCLVYNIEKKLGANFKEYCEREKQKSIHQNQR 180 Query: 201 LKVMLQPEQAEQRLQLIDAAFKRLSYPTLWIHGQEDGIVRYLPSKAYLESLHNPLIELVG 260 LKVML+P +Q + LI+AAF +L+ P LWIHG++DGI++YLPSKAY ESL+N I+ Sbjct: 181 LKVMLEPSTLKQNIVLINAAFLKLNCPALWIHGKQDGIIKYLPSKAYYESLNNKQIQFKA 240 Query: 261 LSNTAHTTFFEQPQQFLQLVEQF 283 + AHT +FEQPQ+FL LV F Sbjct: 241 IEAAAHTPYFEQPQKFLSLVNDF 263 >ref|NP_072996.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length = 268 Score = 77.0 bits (188), Expect = 2e-016, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 123/271 (45%), Gaps = 45/271 (16%) Query: 39 ERGKIF-FLHAFTGNITNKLSFRTHF-----KDYSFYGINFPGHGNSVIHNQSELDFNFW 92 +R +F FLH F SF F K + F+ NFPGHG++ + +L N + Sbjct: 20 KRKNVFIFLHGFGSEYA---SFSRIFSLFKKKKWPFFTFNFPGHGDNESTDTDQLKLNHF 76 Query: 93 IKLVQQFFNKYQLKNVVLFGHSIGGGLAIALTQVLTKEQIKGIILEAPLNPGIRATPPSI 152 + LV F + +L NV+L GHS+GG +A+ + +V+ +IK +IL AP+N Sbjct: 77 VDLVCDFIVQKKLNNVILIGHSMGGAVAVLVNKVIP-LKIKALILVAPMN---------- 125 Query: 153 ISALVPDTNEDFEAVQRALIYNIEQRFGANFKDFCAKQKQK---------MIQKYAPLKV 203 F ++ ++ +R +N KDF ++++ +K K Sbjct: 126 --------QTSFSVNKKRILDTFFKRNNSNHKDFVEHEEKRKSLLKIAINAFKKRTTFKT 177 Query: 204 MLQP--EQAEQRLQLIDAAFKRL-SYPTLWIHGQEDGIVRYLPSKAYLESLHNPLIELV- 259 + + A+ ++ A++ + + PTL I G D + P+KA ++ L N +++ Sbjct: 178 LYSDMVQNAKYGNDSLERAYEMIGNKPTLVILGANDIVT---PTKASVDYLANKSDKIIF 234 Query: 260 -GLSNTAHTTFFEQPQQFLQLVEQFLNKLNK 289 + H+ P+ F V +FL+ L K Sbjct: 235 KVIDGVGHSPHDSAPKLFFDYVLEFLDNLKK 265 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508185|ref|NP_110134.1| ribosomal protein S4 [Mycoplasma pneumoniae M129] (205 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072978.1| ribosomal protein S4 [Mycoplasma genitalium G-37] 379 e-107 >ref|NP_072978.1| ribosomal protein S4 [Mycoplasma genitalium G-37] Length = 205 Score = 379 bits (972), Expect = e-107, Method: Compositional matrix adjust. Identities = 180/205 (87%), Positives = 193/205 (94%) Query: 1 MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRKTIPGQHGNRFRSSTMSGYAQQLQEKQRM 60 MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRK+IPGQHGNRFRSST+SGYAQQLQEKQRM Sbjct: 1 MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRKSIPGQHGNRFRSSTLSGYAQQLQEKQRM 60 Query: 61 QYMYGITDKQFRRLFRLVLKQRGNLAVNLFRVLESRLDNIVYRMGFAPTRRSARQLVNHG 120 QYMYGITDKQFRRLFR VLKQ+GNL VNLFRVLESRLDNIVYRMGFAPTR+SARQ+VNHG Sbjct: 61 QYMYGITDKQFRRLFRFVLKQKGNLTVNLFRVLESRLDNIVYRMGFAPTRKSARQMVNHG 120 Query: 121 HVLLNDRTVDTPSIILNPGDKVRLKAKTIKIPIVKAASESGVVSPFVETNNKTFEGTYVR 180 HV+LND+TVDTPSII+NPGDKVRLKA+ K P+VK E+ V+S FVETN K FEGTY+R Sbjct: 121 HVILNDQTVDTPSIIINPGDKVRLKARITKSPLVKNFIENSVISSFVETNKKAFEGTYIR 180 Query: 181 FPERSELPAGINESYVVEWYKRLVK 205 FPERSELPAGINESYVVEWYKRLVK Sbjct: 181 FPERSELPAGINESYVVEWYKRLVK 205 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508186|ref|NP_110135.1| cytadherence accessory protein HMW1 [Mycoplasma pneumoniae M129] (1018 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072979.1| cytadherence accessory protein (hmw1) [Mycoplas... 315 2e-087 >ref|NP_072979.1| cytadherence accessory protein (hmw1) [Mycoplasma genitalium G-37] Length = 1139 Score = 315 bits (807), Expect = 2e-087, Method: Compositional matrix adjust. Identities = 148/296 (50%), Positives = 220/296 (74%), Gaps = 1/296 (0%) Query: 724 NLFANSDINSIIAELKQGRSNPAINFDDIFKMSSYQMVVKKSFVQISDFITNSKTDITNR 783 N SD+ II+ELK+G NP INFD IF+M+ YQM VK+SF+ ++DF+TN K I+ R Sbjct: 844 NFNKKSDLYKIISELKRGELNPTINFDAIFQMNDYQMSVKQSFIHLNDFVTNYKNQISER 903 Query: 784 FLLIKKELQAELTRLIEENEQLKAEFLNAKDLSVYQKDELLRSLSNDFTIAHRPSDSYEQ 843 +L+IKKELQ+EL+RLI++NE L +F NAK+L+ QK+E++RSL++DF IA++PS+SYEQ Sbjct: 904 YLIIKKELQSELSRLIDQNENLNVQFNNAKNLTTLQKEEMIRSLASDFAIAYKPSNSYEQ 963 Query: 844 LQKSGELVRNIQKAILENESKIKNIQITLKELKAVYKLCSDTVLNGMAKLDSVLRFNKKE 903 LQKSGE++R++Q+AI ENE KI++IQ +LK+LK VY C +T++N + KLD+ LRF KKE Sbjct: 964 LQKSGEIMRHVQRAITENEKKIESIQGSLKQLKTVYNSCCETIMNNINKLDNTLRFAKKE 1023 Query: 904 KDPLLLNSMETLSSFE-TEPQAIIEDLLDFSSSFDKMSNEQLDEFVYQXXXXXXXXXXXX 962 KDPLLL++ ++++ EP +++DL+DFS++FD +SNEQLD+F+Y+ Sbjct: 1024 KDPLLLSNFDSVTDNGLVEPNQLMDDLIDFSNTFDNISNEQLDDFIYENMDRNIDFEFEG 1083 Query: 963 XXHQLSSMNIHGLEPLDPMKLDDFDFETLTPDKTSNLSSILDDELMENGGDFNLDY 1018 + ++ ++ + ++D D ETL PD+TSN SS+LD++L E+ GDF+LDY Sbjct: 1084 FNNDFVDIDAKVMDSMSAFSVNDLDIETLVPDRTSNFSSLLDEDLFESSGDFSLDY 1139 Score = 208 bits (530), Expect = 2e-055, Method: Compositional matrix adjust. Identities = 103/184 (55%), Positives = 131/184 (71%), Gaps = 20/184 (10%) Query: 1 MKKSKEAVFEDKDYTEENPEQIFGNLYDGKLTVQ-DGKVKIAYDGDGNGYYIAFNSETGV 59 M K+K++VFE+K+YT+ PE IFG+LYDGK TV+ D +K+AYD DGNGYYIAFN ETGV Sbjct: 1 MAKNKQSVFEEKNYTQTEPENIFGDLYDGKSTVEEDPNIKVAYDADGNGYYIAFNKETGV 60 Query: 60 YYDPYGDTEYDISVLFDANGNSFVFADAPTVEVLAGEQEQTEAEPDYLQYVGNEAYGYYD 119 YYDPYGDTEYDIS LFD NGN FVF ++ + E DYL+YVGN YG YD Sbjct: 61 YYDPYGDTEYDISQLFDENGNPFVF-------------DEKQEENDYLKYVGNPDYGSYD 107 Query: 120 EAGEWVWSGYFEGDQWISTLPQTEAEEKQFGFEDNIE---TTPTASED-FGLEADVPAPE 175 E GEWVWSGYFE DQWIST +++ ++ +GF+ ++ P + ED +G + D+P PE Sbjct: 108 ENGEWVWSGYFENDQWIST-KESQPTDENYGFDSDLPPEVKQPESVEDNYGFDNDLP-PE 165 Query: 176 VAEP 179 V +P Sbjct: 166 VKQP 169 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508187|ref|NP_110136.1| hypothetical protein MPN448 [Mycoplasma pneumoniae M129] (285 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072980.1| hypothetical protein MG313 [Mycoplasma genitali... 283 1e-078 >ref|NP_072980.1| hypothetical protein MG313 [Mycoplasma genitalium G-37] Length = 287 Score = 283 bits (725), Expect = 1e-078, Method: Compositional matrix adjust. Identities = 150/287 (52%), Positives = 212/287 (73%), Gaps = 2/287 (0%) Query: 1 MFPYYPLKVTRNLQLLVWAAVLMALSFIFNIFSINVTSVLKVSFTRIPFALIGWMFGPVW 60 MFPYYPL++ ++LQLLVWA+VL+AL+FIF+IFSI+VT+VL +SF RIPFAL GW+FGP+W Sbjct: 1 MFPYYPLRLLKSLQLLVWASVLLALTFIFSIFSISVTNVLSISFLRIPFALFGWIFGPIW 60 Query: 61 GFTFGAIADTMDWLTRGYTWFWLFAIQKPMFCFLAGLVKGVYQVRQSSTNWKIDFWILQS 120 GF FG ++DT+DWLT+GY WFW+FA+QKP+F FLAG+VKG+Y VR++++N+K+DFW+LQ+ Sbjct: 61 GFIFGFLSDTIDWLTKGYVWFWMFALQKPLFAFLAGIVKGIYLVRKNASNYKVDFWVLQT 120 Query: 121 XXXXXXXXXXXXXXXXXXDGNFQAAGNQSFGRG-FDVNVHILQGITMAAFISFFVGLEIF 179 + FQ G ++F VNV +LQ IT+ +F+ FF+ E F Sbjct: 121 LLVTFFVVSVTLLLLYLTNNEFQQIGTKNFQTADLSVNVVVLQIITLVSFVIFFLVTEGF 180 Query: 180 LGWKYTKVKKPKEMILNLYILMMALLMTLVVSLLIGTVASIEYLVFL-SGKPSKNFVKYG 238 LG+ Y K + ++ +L +Y L++ +LM++VVS+L+GT+A+IE++ F+ +G+PS NFV YG Sbjct: 181 LGFVYVKKRNKEQALLTIYSLVLMVLMSVVVSILLGTIAAIEFITFINNGRPSNNFVLYG 240 Query: 239 SYFFLMPRVLVQALLMPLYLALFKPLIRIAEXXXXXXXXXXXXSWKR 285 YFFL+PRVLVQALL+P+Y+ALF PLI I E SWK Sbjct: 241 VYFFLLPRVLVQALLLPIYVALFYPLIGIVENNLKNYLLLFTLSWKS 287 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508188|ref|NP_110137.1| hypothetical protein MPN449 [Mycoplasma pneumoniae M129] (448 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072981.1| hypothetical protein MG314 [Mycoplasma genitali... 367 e-103 >ref|NP_072981.1| hypothetical protein MG314 [Mycoplasma genitalium G-37] Length = 443 Score = 367 bits (943), Expect = e-103, Method: Compositional matrix adjust. Identities = 212/450 (47%), Positives = 288/450 (64%), Gaps = 9/450 (2%) Query: 1 MTFSDLLTKLQDNLDIVFNANALKERIQSDPAFAKTIREQLKLLYFLEXXXXXXXXXXXD 60 MTFS++LTK+Q+NLDIVFN L+ RI++D FAKTI QLKLLYFLE D Sbjct: 1 MTFSEILTKVQNNLDIVFNNETLRTRIKTDSDFAKTILAQLKLLYFLEEKQKRVKTKKPD 60 Query: 61 FQPVFQNLEARFVSLGQTKLANTEXXXXX-XXXXXXXXXXXXPIAVCNLFNRDLNSFSKL 119 +F + +F+ LGQ +L+ E +AV NLFN++LNSF+KL Sbjct: 61 -HFLFGSFHDKFIQLGQNQLSEKELKAAKFDLTDALDLANYLNVAVKNLFNKELNSFTKL 119 Query: 120 SSVQPTAVEKTTNGANKPTVTIDLNQPRIHTTGTVSPELEN-FVNESLEARARQRAFMRV 178 + Q V + N TV + + I+ + ++ LEN + ++L+ RAR RAF R Sbjct: 120 AETQVKPVSELQ--ENNKTVKDNPSFQTINNSQQLNSGLENNILQQTLQVRARDRAFGRF 177 Query: 179 TSERMVGKIFEFQFKSQWIKWAQLAIFISMLLIGAAAIAYLVVVNLLFYRYVNPDSNLTK 238 TSE++VGKIFEFQFKSQWIKWAQLAIFISM+ I +IAY+V+VN+ F +V+ +S L Sbjct: 178 TSEKLVGKIFEFQFKSQWIKWAQLAIFISMIAIFFISIAYVVMVNVFFTHFVDKNSPLFN 237 Query: 239 AVTGQNNTDRPALVDLNGGINLFFPVSASTLITLIFLGFGSTSFLLAFQGKPYSFATRSQ 298 QN + N +N FF +S+S LIT+IFL FG SF AFQGKPYSFATR Q Sbjct: 238 VNNDQNTVQQSNADTTN--LNRFFALSSSNLITMIFLAFGGASFFFAFQGKPYSFATRGQ 295 Query: 299 TFKAMHFLKHQFGVTDFPRINDNYRYKVRIKWIFWTIFLFVALNALPGGNIITGGILNPS 358 T +AM +L+ +FGV +FP+INDNYRYKVRIKWIFWTIF+FV LN +P GNI+ G N + Sbjct: 296 TNRAMRYLRSEFGVKEFPKINDNYRYKVRIKWIFWTIFIFVFLNCIP-GNIVRSGFWNAA 354 Query: 359 FLLNALRSNELKINSETFKTIFVGFSIFYLASIIPFALISIIAFVLSPKPSSDQTNEVLN 418 ++ N+L S F + +G + ++ SI+PF++IS+IAF LSPK + +QTNE+ N Sbjct: 355 LIIRLFSENQLISVSPLFASYLIGIAWLFVFSIVPFSIISVIAFSLSPKLNLEQTNEIFN 414 Query: 419 RYVQEEMQQPFKTDCDPNNDNDLTPPAVFG 448 +Y QEE+ +P +D + D+ PP +FG Sbjct: 415 KYFQEELAKPITSD-ESKTTLDIPPPTIFG 443 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508189|ref|NP_110138.1| hypothetical protein MPN450 [Mycoplasma pneumoniae M129] (314 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072982.1| hypothetical protein MG315 [Mycoplasma genitali... 249 4e-068 >ref|NP_072982.1| hypothetical protein MG315 [Mycoplasma genitalium G-37] Length = 297 Score = 249 bits (635), Expect = 4e-068, Method: Compositional matrix adjust. Identities = 130/297 (43%), Positives = 189/297 (63%), Gaps = 1/297 (0%) Query: 16 MTVVYGADIGLIHQQLNQLLNPAACKQVWFQDVNKLYDVVLNQNLFAEDTKPILIHNCSF 75 MT++YG DIGLIHQ+L+Q+ + + K +WF+D+ +LYD+ +Q LF + + +++NCSF Sbjct: 1 MTIIYGQDIGLIHQKLSQIKSNSPYKTIWFKDLKQLYDL-FSQPLFGSNNEKFIVNNCSF 59 Query: 76 LEKNNLTKAELHCLKTLKDTDVVVTIYSDSPANALINDRAITKYACKPVTAKTIHQVISK 135 LEK +LT+ E CL+ LK TDVV+T+Y+D+P + + ++IT C + K++H+ I + Sbjct: 60 LEKTSLTRQENLCLEKLKTTDVVLTVYTDNPFSGIKTIKSITTVFCDKLDWKSMHKAIGE 119 Query: 136 AAKTLKLNLNPDLIDHLATILPFNLGVIEQELRKLTLLSPAELQDKKMLEAVLCDYQTSQ 195 + L L L+ ++ID LA LP N+GVI QE+ KL+LL E++D K++E V+CDYQ Q Sbjct: 120 VCRELNLKLDLEIIDWLANALPLNMGVIYQEINKLSLLGKNEIKDNKLVETVICDYQPVQ 179 Query: 196 ILQLTDAMVRLQTAKALKLIERLFLPKQLTPPQXXXXXXXXXXXXXMVKGVKPQAVFQLQ 255 I +LT A+ Q KA K I+ L K Q MVK P+ + + Sbjct: 180 IYKLTKALTNSQIVKAFKYIDELASTKPNFATQFLEFFSGELLLALMVKSCNPKQLTNIN 239 Query: 256 WNVNPFRLKAIQSQYRFWSTNQLTALINAIWQLDIKIKRNDGLAIHLLKHFVLRFFA 312 NVN FRL AIQSQY +++ L +INAI +LDIK+K NDG AI LLK+F L FF Sbjct: 240 LNVNQFRLIAIQSQYHNFTSKVLVNIINAIQKLDIKLKHNDGFAIPLLKNFALSFFT 296 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508190|ref|NP_110139.1| competence locus operon protein 3 homolog; similar to Swiss-Prot Accession Number P39695, from B. subtilis [Mycoplasma pneumoniae M129] (369 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072983.1| hypothetical protein MG316 [Mycoplasma genitali... 372 e-105 >ref|NP_072983.1| hypothetical protein MG316 [Mycoplasma genitalium G-37] Length = 369 Score = 372 bits (954), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/345 (56%), Positives = 254/345 (73%) Query: 21 IEQNQWVILASFLVIVNLISLTVHWKFGXXXXXXXXXXXXYCQLMPEFQLAKLMKANWLR 80 ++Q Q+V L+ +++++ L SL WKF +C +P ++ +++K N++R Sbjct: 21 VQQEQFVALSIWIILITLFSLWYDWKFCLLNLTIVGFFIAFCYFVPAVKINQIVKNNFIR 80 Query: 81 TPFISWLDQHTSGVFNQYLKLFLINETTKNTLYQSAIQLNIVHLFVISGFHLSFLFGVME 140 TPFI+W+DQ T G NQYLKLFLINETTKN LYQ+A++LNIVHLFVISGFHLSFLF +ME Sbjct: 81 TPFINWIDQTTKGELNQYLKLFLINETTKNNLYQNALKLNIVHLFVISGFHLSFLFNLME 140 Query: 141 RWLYKRFYINKITGFVMLLLYLFLVGFAFSALRVFVSKLLRQMFPKQLPENNLGLTALLI 200 R+L+KR+Y+NK++GF +LL+YLFLVGFAFSALRVF+S LL+Q+F KQLPE+NL LTALLI Sbjct: 141 RFLWKRWYLNKLSGFAVLLIYLFLVGFAFSALRVFISTLLKQVFKKQLPEDNLSLTALLI 200 Query: 201 ILMSPGALHNFGFNFSFLACFVLFAINKVKLWKPLQAVLTSTLILIVVSPITLHLNRKLN 260 IL+S AL+NFGFNFSFLACFVL +NK+KL K L+ +++S+LILIV+SP++L+LN +LN Sbjct: 201 ILISNHALNNFGFNFSFLACFVLLFVNKLKLLKALKPLVSSSLILIVISPLSLYLNSRLN 260 Query: 261 ALSVFHNLLFTPIALFYFCASWLLLPLIPWMGNSLVGFYWPLPWLSQWALNTTVFLNLPK 320 A SV NLLF+PIALFYFC SW++LP I G + G Y PL LS+W+L TVFL +PK Sbjct: 261 AFSVLFNLLFSPIALFYFCVSWIILPFIGVFGQASFGIYLPLKMLSEWSLKVTVFLQIPK 320 Query: 321 PNWXXXXXXXXXXXXXXXXXXXFYYDRSLWCRYWVNSPAVKPTAQ 365 PN YYD +LW RYW NSP +K + Sbjct: 321 PNLIFFFVYYGLLGLLYTIFTVAYYDNNLWSRYWANSPKIKSNQK 365 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508191|ref|NP_110140.1| cytadherence accessory protein HMW3 [Mycoplasma pneumoniae M129] (672 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072984.1| cytadherence accessory protein (hmw3) [Mycoplas... 202 7e-054 >ref|NP_072984.1| cytadherence accessory protein (hmw3) [Mycoplasma genitalium G-37] Length = 599 Score = 202 bits (515), Expect = 7e-054, Method: Compositional matrix adjust. Identities = 99/169 (58%), Positives = 122/169 (72%), Gaps = 7/169 (4%) Query: 1 MTDKERAKLAKAYGKLAQKIQKSYPDINVVYGRDAKNKLHALYQDPETGNIFSLEKRKQL 60 M DK++AK+ KAY KL +KI K YPD++VVY RD KNK+HALYQDPE+GNIFSLEKRKQL Sbjct: 1 MNDKQKAKINKAYNKLLKKINKRYPDVSVVYARDHKNKVHALYQDPESGNIFSLEKRKQL 60 Query: 61 PADYPLFELDSDEPISFAPKIIPLTAFDGNNNEVIVQYDQVNNTFYDQDGNVLDVSGYRD 120 ++YPLFEL SD PISF I+ L A+D NN V VQYDQ NNTFYDQ+GNVLDVS Y D Sbjct: 61 ASNYPLFELTSDNPISFTNNIVSLNAYDDKNNLVTVQYDQDNNTFYDQNGNVLDVSSYTD 120 Query: 121 GENIPLVDYLNYGGXXXXXXXXXXEPLSGEGYPDIDAGLPVVDPDATPE 169 + +PL++YL+ E + + YP IDAGLP ++ D P+ Sbjct: 121 EKKVPLINYLS-------STQTSQEQPTQQDYPSIDAGLPKIEVDDQPK 162 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508192|ref|NP_110141.1| 30K adhesin-related protein [Mycoplasma pneumoniae M129] (274 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508193|ref|NP_110142.1| hypothetical protein MPN454 [Mycoplasma pneumoniae M129] (193 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072986.1| hypothetical protein MG319 [Mycoplasma genitali... 147 6e-038 >ref|NP_072986.1| hypothetical protein MG319 [Mycoplasma genitalium G-37] Length = 178 Score = 147 bits (372), Expect = 6e-038, Method: Compositional matrix adjust. Identities = 82/176 (46%), Positives = 102/176 (57%), Gaps = 16/176 (9%) Query: 18 VAIAYLFLAIFYFGTVSPSFKLAQPMDVFNRFFSKEALDXXXXXXXXXXXXXXXXXXXXX 77 V AYLFLAIFYFG+++P F+LAQPMDVFNRFFSKEALD Sbjct: 18 VGFAYLFLAIFYFGSLNP-FELAQPMDVFNRFFSKEALDNISSNNGATATAQTSSLL--- 73 Query: 78 XXXXXXXXEQVANNANKLDPRFPIDGSLFSQIPGYVDFLKKPNIPAFLEKVGPYLTKYII 137 + + ++N LD RFP + S F IPGYVDFLK +P F+E+ PYLTKY+I Sbjct: 74 --------QLLEGSSNGLDNRFPTEKSAFYAIPGYVDFLKNAKLPGFVEQFTPYLTKYVI 125 Query: 138 PLGMALVSGLIGALIINFILSXXXXXXXXXXXXXXXXQQSRVDDYYYDEAPRRRRR 193 PLGMA VSGLIG LI+NF L+ +Q + YYD++ RR+R Sbjct: 126 PLGMAFVSGLIGTLIVNFFLNKITRSIKRRKRNMKKQEQ----EEYYDDSRSRRKR 177 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508194|ref|NP_110143.1| hypothetical protein MPN455 [Mycoplasma pneumoniae M129] (287 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072987.1| hypothetical protein MG320 [Mycoplasma genitali... 341 4e-096 >ref|NP_072987.1| hypothetical protein MG320 [Mycoplasma genitalium G-37] Length = 286 Score = 341 bits (875), Expect = 4e-096, Method: Compositional matrix adjust. Identities = 185/288 (64%), Positives = 217/288 (75%), Gaps = 6/288 (2%) Query: 1 MINQAN---NQVNFSEQQFVHHKRFSVIRLTFSVAAXXXXXXXXXXXXVQQLLTNTTSLG 57 MIN +Q + +QFV K+ SVIRLTF VAA VQQLL+ +T L Sbjct: 1 MINSTKGYIDQNGLAAKQFVQTKQLSVIRLTFMVAAFGIFFIFLVALTVQQLLSRST-LI 59 Query: 58 TLASDIRTLGTIAFVASLVSLILYFVTAFKLRNRNTTLAWFWGLIIADVISYGITLGVLL 117 LASD RTL TIA + S VSLILYFVTAFKLRN NT+L WFW LII DVISYGITLG+LL Sbjct: 60 DLASDFRTLSTIAVITSFVSLILYFVTAFKLRNPNTSLTWFWALIITDVISYGITLGILL 119 Query: 118 TLATTQLRELIDFKFSDIVFAFLGAALVYGTVWGLSALPSQQRRYQQTQTLXXXXXXXXX 177 TLATT ++ ++F+ +DIV+AFLGA+LV+G+VWGLSALPSQ+RRYQQTQTL Sbjct: 120 TLATTFSKQ-VNFEANDIVYAFLGASLVFGSVWGLSALPSQKRRYQQTQTLFHILLWAFV 178 Query: 178 XXXXXXLLTFVLNFTVFRGGRTNILDLLFPGLSLIVGGIFSLLSVYFVCLQIRNEQDLVK 237 LL+F+LNFTVF TN+LD + PGLSLIVGGIFSL+SVYFV LQIRNEQDL+K Sbjct: 179 ISIVASLLSFILNFTVF-ASTTNLLDRIIPGLSLIVGGIFSLISVYFVSLQIRNEQDLIK 237 Query: 238 LYESQDPALAKAQMWRSALFFGAWLVSSFMNLVYFILRIILLTRNLSR 285 YES+D +A+ Q WRSALFFGAWL+SSFMNLVYFILRIIL+T+N SR Sbjct: 238 YYESEDYEMARRQSWRSALFFGAWLISSFMNLVYFILRIILITKNFSR 285 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508195|ref|NP_110144.1| hypothetical protein MPN456 [Mycoplasma pneumoniae M129] (1005 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] 1201 0.0 >ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 934 Score = 1201 bits (3107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 629/1009 (62%), Positives = 729/1009 (72%), Gaps = 81/1009 (8%) Query: 1 MKFQRKYW--GXXXXXXXXXXXXXXXXXXXXRDVYVTSSASDLLKNNSVPMSMFNVSPTS 58 MK +++Y G + V+ TSS++DLLKNNSVP+SMFNVSPTS Sbjct: 1 MKLKKRYLLLGSTLTVSAALILSACASSQLNKGVFFTSSSADLLKNNSVPLSMFNVSPTS 60 Query: 59 SFFGSKYAGLTTYIATGSNKDDGVNVATQTQEKLVLELATSVKGYKKKDKAXXXXXXXXX 118 SFFG+ YAGLT Y+ATG+N+DDGVNV Q +EKLVLELA SV GYKK + Sbjct: 61 SFFGNAYAGLTNYVATGTNRDDGVNVTDQIKEKLVLELALSVTGYKKTTHSGLKGRAQKN 120 Query: 119 XXXXXXXXXXXXXGE--DDWECIGEIKRXXXXXXXXXXXXKSITEEEKFQEISQKATRYE 176 ++W+ IG I R KSITE+ + +I+Q+ATRYE Sbjct: 121 GSTDSSDGSSKNDYTKFNEWDAIGTIYRDSS---------KSITEDPNYHKITQEATRYE 171 Query: 177 FAIDTGIKWVDNNGKPVKDASGNDVKLSSKDFERGFEAYILSSELRFNRNGYFIDLMGLD 236 F I+T + WVDN G+ VK + VKLSSKDFERGFE YILSS L FNRNGYFIDLMGLD Sbjct: 172 FTINTSLSWVDNAGREVKQ-NNQPVKLSSKDFERGFETYILSSNLGFNRNGYFIDLMGLD 230 Query: 237 VKKTVGMTKKNGAQVQMKVASSDEKDGEEKTVKITDDAYNPEDYQSTDDSKFNVYLTSPF 296 V+KTVGM K NG+ DG K ++ITD+ Y+ E+Y+S DD+KFNVYLTSPF Sbjct: 231 VEKTVGMDKTNGSS-----------DGNGKGIEITDENYDVENYRSVDDNKFNVYLTSPF 279 Query: 297 PFLLSMMSKEFFFPIPHTHPKVKAIKVGKDSPLVYNEKNGSKILDQTKTNFDGIYGGGVN 356 PF LSMMSKEFFFPIPHTHPKVKA+K+GKDSPL YN+ N KILDQ TNFDGIYGGGVN Sbjct: 280 PFFLSMMSKEFFFPIPHTHPKVKALKLGKDSPLKYNQNNNRKILDQANTNFDGIYGGGVN 339 Query: 357 AWRDTWSVGPYYVESFNQSQIVFKRNSEYDTHITPNLPKTREDNEKPIPTMINYFQPGAT 416 AW+DTWSVGPYYVESFNQ+QIVFKRN YD ITPNLPKTR++NEKPIP +++YFQPGAT Sbjct: 340 AWKDTWSVGPYYVESFNQAQIVFKRNQIYDAIITPNLPKTRQENEKPIPAIVSYFQPGAT 399 Query: 417 PEVFYSNYIAGGLSSAEVPYSQQEDARSRFAGTGDLRWVKVQKTAQSAQITYSSRPYVVE 476 PEVFYS+YIAGGLS++ VPYSQQ+DARSRF GTGDLRW+K+QKTAQSAQ+TYS +PYV Sbjct: 400 PEVFYSSYIAGGLSASAVPYSQQQDARSRFNGTGDLRWLKIQKTAQSAQVTYSGKPYVAN 459 Query: 477 GETVKTNSNITETEAKFLYNSESEEALTIRAGINGLINWQNLAIILLPNSGDLNYSIVPF 536 TV+ N+NITETEAKFLYNSESEEALTIRAGINGLINW+NLAII LPNSGD+NYS VPF Sbjct: 460 DSTVQLNANITETEAKFLYNSESEEALTIRAGINGLINWKNLAIIDLPNSGDVNYSTVPF 519 Query: 537 GIFKEKGKNGASVQQKAVSTTEGSDLMNDYYYKIEKEQRLGLIPQREGNYEKNKNVLESA 596 GIFKEK NG S S T + NDYYYKI QRLGLIP++ G ++K+KNVL++A Sbjct: 520 GIFKEKPANGTS------SGTNTDGIENDYYYKINNNQRLGLIPEQTGTFQKDKNVLDTA 573 Query: 597 TVKINYYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAKSVNVTKHSFVQALKK 656 TVK++YY V +K V+VTK SF+ ALKK Sbjct: 574 TVKLSYY----------SSTKTNGAQVRTASTSGSSSQTSQVSSKQVSVTKQSFISALKK 623 Query: 657 VGFSGSNPLHFNMKLGNSSLSANGVDYYNAVKQALTELGTADNGEKLIVPEIILGDAQGP 716 VGF+G+NPLHFN+KLGN+SLS+N VDYYNA+KQALTELG DNGE LI+PEIILGDAQGP Sbjct: 624 VGFTGNNPLHFNIKLGNASLSSNQVDYYNALKQALTELGN-DNGENLIIPEIILGDAQGP 682 Query: 717 TRNEWYIGLSSVLGFSSWSPDYDGVGTWLDAATQLNDQGGGDVITYSSGAHIVRTLLLAA 776 TRNEWYIGLSSVLGFS WSPDYDGVGTWLDAATQLN +G G+VITY+SG+HIVRTLLLAA Sbjct: 683 TRNEWYIGLSSVLGFSYWSPDYDGVGTWLDAATQLNSEGIGEVITYNSGSHIVRTLLLAA 742 Query: 777 SQKDVHSKFTQKIDQQNTASTTSDVTVXXXXXXXXXXXXNTEEEKW-DDVTSADLFKDDP 835 SQ +V ++ K+ Q NT + D W +TSADLFKDDP Sbjct: 743 SQNNVFNQIENKL-QNNTTTNGKD---------------------WCSCITSADLFKDDP 780 Query: 836 YVLKNFGDAKAQAAQRXXXXXXXXXXXQASLEFTKKALSLLKFLVDNGILDKEKVKEAIK 895 YV+KNFG ASL FTKKALSLLKFLVDN +L +KVKEAIK Sbjct: 781 YVIKNFGTNGNNGT-------------SASLAFTKKALSLLKFLVDNKVLKADKVKEAIK 827 Query: 896 DPNKYLGKRDKIENGTNKPSKNEDF-IGYELKDIYKKAAQLNRFNSIWAEKDTDNAKFLI 954 DP+KYL KR KI++ NKP+ D IGYELKD+Y AAQLNRFNSIWAE+DTDNAKFLI Sbjct: 828 DPDKYLSKRSKIDD--NKPANVSDIHIGYELKDLYDNAAQLNRFNSIWAEQDTDNAKFLI 885 Query: 955 TVVDSYFPVLPVPAAGLNETSPTLLKPWFQFRSAPSGNGTIRDYGFIPE 1003 TVVDSYFPVLPV A GLNET P+LLKPWF R+APSG T+RD G+I E Sbjct: 886 TVVDSYFPVLPVSAPGLNETIPSLLKPWFSLRNAPSGIATMRDSGYIDE 934 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508196|ref|NP_110145.1| hypothetical protein MPN457 [Mycoplasma pneumoniae M129] (329 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] 380 e-108 >ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 934 Score = 380 bits (977), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/310 (64%), Positives = 223/310 (71%), Gaps = 40/310 (12%) Query: 19 DNGEKLIVPEIILGDAQGPTRNEWYIGLSSVLGFSFWSPDYDGVGTWLDAATQLNEQGGG 78 DNGE LI+PEIILGDAQGPTRNEWYIGLSSVLGFS+WSPDYDGVGTWLDAATQLN +G G Sbjct: 664 DNGENLIIPEIILGDAQGPTRNEWYIGLSSVLGFSYWSPDYDGVGTWLDAATQLNSEGIG 723 Query: 79 DVITYSSGAHIVRTLLLAASQSNVHSTFTSKALGNDQXXXXXXXXXXXXXXXXGDGQQQT 138 +VITY+SG+HIVRTLLLAASQ+NV + +K Q Sbjct: 724 EVITYNSGSHIVRTLLLAASQNNVFNQIENKL-------------------------QNN 758 Query: 139 GEQKEEDWKD-ISKADLFKDDPYVLKNFGDSTTQAKMQXXXXXXXXXXXXQASLAFTKKA 197 +DW I+ ADLFKDDPYV+KNFG + ASLAFTKKA Sbjct: 759 TTTNGKDWCSCITSADLFKDDPYVIKNFGTNGNNG--------------TSASLAFTKKA 804 Query: 198 LSLLKFLVDNKILKKDKVKEAIMNPDQYLSKRSKLDSNNQKPTKDDFIGSEFKDLYENAA 257 LSLLKFLVDNK+LK DKVKEAI +PD+YLSKRSK+D N D IG E KDLY+NAA Sbjct: 805 LSLLKFLVDNKVLKADKVKEAIKDPDKYLSKRSKIDDNKPANVSDIHIGYELKDLYDNAA 864 Query: 258 KLNRFNSIWAEKDTDNAKFLITVVDSYFPVLPVPAAGLNETSPTLLKPWFQFRSAPSGNG 317 +LNRFNSIWAE+DTDNAKFLITVVDSYFPVLPV A GLNET P+LLKPWF R+APSG Sbjct: 865 QLNRFNSIWAEQDTDNAKFLITVVDSYFPVLPVSAPGLNETIPSLLKPWFSLRNAPSGIA 924 Query: 318 TIRDYGFIPE 327 T+RD G+I E Sbjct: 925 TMRDSGYIDE 934 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508197|ref|NP_110146.1| hypothetical protein MPN458 [Mycoplasma pneumoniae M129] (157 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] 124 6e-031 >ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 934 Score = 124 bits (310), Expect = 6e-031, Method: Compositional matrix adjust. Identities = 71/129 (55%), Positives = 93/129 (72%), Gaps = 11/129 (8%) Query: 26 FKFEKEQRLGLIPQREGQYEKNKNVLTSATVKVNHYSSKQGQTQXXXXXXXXXXXXXXXG 85 +K QRLGLIP++ G ++K+KNVL +ATVK+++YSS + Sbjct: 545 YKINNNQRLGLIPEQTGTFQKDKNVLDTATVKLSYYSSTKTNGAQVRTAS---------- 594 Query: 86 DSTTTSSQTPSVEAKKVEVTKQSFVQALRKVGFTGNNPLHFNMKLGNSSLSANGVDYYNA 145 ++ +SSQT V +K+V VTKQSF+ AL+KVGFTGNNPLHFN+KLGN+SLS+N VDYYNA Sbjct: 595 -TSGSSSQTSQVSSKQVSVTKQSFISALKKVGFTGNNPLHFNIKLGNASLSSNQVDYYNA 653 Query: 146 VKQALTELG 154 +KQALTELG Sbjct: 654 LKQALTELG 662 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508198|ref|NP_110147.1| hypothetical protein MPN459 [Mycoplasma pneumoniae M129] (591 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] 705 0.0 >ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 934 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/578 (63%), Positives = 427/578 (73%), Gaps = 40/578 (6%) Query: 23 MKFQRKYW--GXXXXXXXXXXXXXXXXXXXXRDVYVTSSASDLLKNNLVPMSMFNVSPTS 80 MK +++Y G + V+ TSS++DLLKNN VP+SMFNVSPTS Sbjct: 1 MKLKKRYLLLGSTLTVSAALILSACASSQLNKGVFFTSSSADLLKNNSVPLSMFNVSPTS 60 Query: 81 SFFGSKYAGLTTYIATGSNKDDGVNVTSQTQEKLVLELATSVKGYKKKTSTASNMKTASV 140 SFFG+ YAGLT Y+ATG+N+DDGVNVT Q +EKLVLELA SV GYKK +T S +K + Sbjct: 61 SFFGNAYAGLTNYVATGTNRDDGVNVTDQIKEKLVLELALSVTGYKK--TTHSGLKGRAQ 118 Query: 141 XXXXXXXXXXXXXED-----EWEVVGSEIKRESGKGDNGKSITEDSNFQTISQQATRYEF 195 D EW+ +G+ I R D+ KSITED N+ I+Q+ATRYEF Sbjct: 119 KNGSTDSSDGSSKNDYTKFNEWDAIGT-IYR-----DSSKSITEDPNYHKITQEATRYEF 172 Query: 196 TIDTSIKWVDNNGKPVKDEKGQEVKLSSKDFERGFEAYILSSELRFNRNGYFIDLMGLDV 255 TI+TS+ WVDN G+ VK + Q VKLSSKDFERGFE YILSS L FNRNGYFIDLMGLDV Sbjct: 173 TINTSLSWVDNAGREVK-QNNQPVKLSSKDFERGFETYILSSNLGFNRNGYFIDLMGLDV 231 Query: 256 EKTVGM--TNGKNGTQVXXXXXXXXXXXXXXXXXIEITDDNYDPEDYRSTSDDKFNVYLT 313 EKTVGM TNG + IEITD+NYD E+YRS D+KFNVYLT Sbjct: 232 EKTVGMDKTNGSSDGN---------------GKGIEITDENYDVENYRSVDDNKFNVYLT 276 Query: 314 SPFPFLLSMMSKEFFFPIPHTHPKVKAIKVGPNSPLVYNEKNSAKILDQTKTNFDGIYGG 373 SPFPF LSMMSKEFFFPIPHTHPKVKA+K+G +SPL YN+ N+ KILDQ TNFDGIYGG Sbjct: 277 SPFPFFLSMMSKEFFFPIPHTHPKVKALKLGKDSPLKYNQNNNRKILDQANTNFDGIYGG 336 Query: 374 GGVNAWRDAWSVGPYYVESFNQSQIVFKRNKEYDDHITPNLPKTREGNEQPIPTMINYFQ 433 G VNAW+D WSVGPYYVESFNQ+QIVFKRN+ YD ITPNLPKTR+ NE+PIP +++YFQ Sbjct: 337 G-VNAWKDTWSVGPYYVESFNQAQIVFKRNQIYDAIITPNLPKTRQENEKPIPAIVSYFQ 395 Query: 434 PGATPEVFYSNYIAGGLSSAGVSYSQQEDARSRFASTGDLRWVKVQKTAQSAQITYSSRP 493 PGATPEVFYS+YIAGGLS++ V YSQQ+DARSRF TGDLRW+K+QKTAQSAQ+TYS +P Sbjct: 396 PGATPEVFYSSYIAGGLSASAVPYSQQQDARSRFNGTGDLRWLKIQKTAQSAQVTYSGKP 455 Query: 494 YILEGETVKTNSNITETEAKFLYNSESEEALTIRAGINGLINWQNLAIILLPNSGDLNYS 553 Y+ TV+ N+NITETEAKFLYNSESEEALTIRAGINGLINW+NLAII LPNSGD+NYS Sbjct: 456 YVANDSTVQLNANITETEAKFLYNSESEEALTIRAGINGLINWKNLAIIDLPNSGDVNYS 515 Query: 554 IVPFGIFKEKGKDVQVKQKNTGQASQGSDLMNDYYYKI 591 VPFGIFKEK + T + + NDYYYKI Sbjct: 516 TVPFGIFKEKPAN------GTSSGTNTDGIENDYYYKI 547 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508199|ref|NP_110148.1| Trk-type K+ transport systems, membrane components [Mycoplasma pneumoniae M129] (565 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072990.1| cation transporter, putative [Mycoplasma genita... 761 0.0 >ref|NP_072990.1| cation transporter, putative [Mycoplasma genitalium G-37] Length = 558 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/547 (68%), Positives = 451/547 (82%), Gaps = 2/547 (0%) Query: 20 WGDSISQRIFHFYIYCILLGAVLLFLPFALKTDYQKVISYEVDLQGHTISKQTASYGFLD 79 WG++I+QRIF FYIYCIL G++LLFLP AL+ +YQKV+SY +D QG ++T Y FLD Sbjct: 13 WGETITQRIFCFYIYCILFGSLLLFLPIALQDNYQKVVSYGIDWQGKRFEQKT-DYNFLD 71 Query: 80 ALFLAVSAFSDTGLSTTVVSETYSVFGQTVLAILLQLGGIGFVVIAFLVWRLFKLHKKGK 139 ALFL+ SAFSDTGLST VVS+TYS+FGQ VLA+LLQLGGIGFVVIAFL WRLF HKK + Sbjct: 72 ALFLSTSAFSDTGLSTVVVSKTYSIFGQIVLAVLLQLGGIGFVVIAFLAWRLFNFHKKEQ 131 Query: 140 YSFYEKLMLQSERGGSKLGTTSEMIVVSVLFLFMVELLYGFLYTILFYFIPAFESASVFQ 199 YSFYEKLMLQSERGGSKLG TSEMI+VS++FLF+VEL+YGFLY ILFYFIP FE A++F Sbjct: 132 YSFYEKLMLQSERGGSKLGNTSEMILVSIIFLFIVELIYGFLYGILFYFIPGFEPANLFA 191 Query: 200 SSGKVSNQLKALIVDSTKRLPVVHNLNLAFQYGFFHSLSAVNNAGIDLLGANSFAPYRTN 259 KVS QLKAL+VDS + + +++N AFQ GFFHSLSAVNNAGIDL+G +SF PYR Sbjct: 192 DHAKVSTQLKALVVDSNQTIAAFNDINKAFQAGFFHSLSAVNNAGIDLIGGSSFVPYRNG 251 Query: 260 WGIVIQWLAISQIIFGGIGYPVLFDAYEAIKKRRLYGKYYKHQFSLFTKLAVLTNLIVTA 319 GI+IQWL ISQIIFGGIGYP LFD +EAIKK+ YG++ KHQFSLFTKL V+TN++V Sbjct: 252 LGIIIQWLTISQIIFGGIGYPCLFDGFEAIKKKIKYGRHTKHQFSLFTKLTVITNIVVIL 311 Query: 320 WCFLMLLMVEFIVITSLTNTIAHLNVEKAYLVEG-LKNKSNQELQSLIFGPIPAASRVMQ 378 F +LLMVEFI SLTNTI + + EK L+ L+++SNQ + + +FG P ASRVMQ Sbjct: 312 LFFTLLLMVEFIASDSLTNTIVNFSDEKKSLINTQLQSQSNQAIHASVFGNNPNASRVMQ 371 Query: 379 LWFGVISSRSAGFSVFPWSAESDIIKGIMVIAMFIGGSPSSTAGGIRTTTLAVIFLTLKA 438 L+F VISSRSAGFSVFP ++E K I+ +AMFIG SPSSTAGGIRTTTLAVIFL L A Sbjct: 372 LFFMVISSRSAGFSVFPVASEIQTTKIIIALAMFIGASPSSTAGGIRTTTLAVIFLALVA 431 Query: 439 KFRGQKEVKVFKRSIDGQTVINAFLVAVFGLVSVVLIAILLPLSMQQPLSFVDSLFETTS 498 KF+GQKEVK FKRSID TVI+AFLV + L++V+L A+LLPLSM+QP+SF+D+LFETTS Sbjct: 432 KFKGQKEVKAFKRSIDQTTVIDAFLVLIISLIAVLLTAVLLPLSMEQPVSFIDALFETTS 491 Query: 499 AFGTVGLSSGATKIMALEPTRNLFNYLTLGLLMIMGQVGVSSSVLTFVKKHPQGNSFSYP 558 AFGTVGLSSGAT +AL+P RN FN+L L LLM+MGQVGVSSSVLTFV+KHP+ NS+SYP Sbjct: 492 AFGTVGLSSGATVNIALDPNRNTFNFLALCLLMVMGQVGVSSSVLTFVRKHPKANSYSYP 551 Query: 559 REDVKVG 565 +E VK+G Sbjct: 552 KEAVKIG 558 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508200|ref|NP_110149.1| KtrA, K+ Na+ uptake [Mycoplasma pneumoniae M129] (231 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072991.1| hypothetical protein MG323 [Mycoplasma genitali... 369 e-104 >ref|NP_072991.1| hypothetical protein MG323 [Mycoplasma genitalium G-37] Length = 227 Score = 369 bits (946), Expect = e-104, Method: Compositional matrix adjust. Identities = 176/226 (77%), Positives = 201/226 (88%) Query: 1 MKRADFCIIGLGRFGMQVAHSLKENNFTLVLIDNDQHKTNTAAQEFDHVVCCDGSNLTAL 60 MKRADFCIIGLGRFGMQVA SLKENNF L+LID D KT+TA+Q+FD+V+CCD SNLTAL Sbjct: 1 MKRADFCIIGLGRFGMQVAQSLKENNFNLLLIDLDDKKTDTASQQFDYVICCDASNLTAL 60 Query: 61 AELQLEEFSAVIVGVTNIEASIMICANLRELGQKNIIARAKNEVHNRVLRTMGIREALIP 120 ELQ++EF+ VIVGVTNIEASIMICANLRELGQKNIIA+AKNEVH RVL TMGIREALIP Sbjct: 61 EELQIDEFAGVIVGVTNIEASIMICANLRELGQKNIIAKAKNEVHKRVLSTMGIREALIP 120 Query: 121 EKIVGKNLVIRLIHGMETEIINLGNDILFVRAPVNNKKLFNRTLGEINIREHTNANLISI 180 EKIVGKNLVIRLIHG+E EIINLGN+I+F+R+ VNNK FN+ L EIN R++T+AN+ISI Sbjct: 121 EKIVGKNLVIRLIHGLENEIINLGNEIIFIRSAVNNKAFFNKRLEEINFRQNTDANIISI 180 Query: 181 MRNGKDVVFPLGPNTQIQPGDVITAVCQLSGVNQYLRYINPNDKNK 226 MR+ K VVFPLGPNT+IQPGD+ITAVCQ +N+YL YINP KNK Sbjct: 181 MRSNKTVVFPLGPNTEIQPGDIITAVCQQKSLNKYLNYINPKTKNK 226 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508201|ref|NP_110150.1| hypothetical protein MPN462 [Mycoplasma pneumoniae M129] (270 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 207 8e-056 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 207 bits (527), Expect = 8e-056, Method: Compositional matrix adjust. Identities = 100/198 (50%), Positives = 132/198 (66%), Gaps = 18/198 (9%) Query: 69 ELETNNLANAPIKRGSNNNQQVQLKADDFXXXXXXXXXXXXXXXXXWTPWLATEQIHKDL 128 L N+ A P+K N++ +V+L+A+ W P L T+QI ++ Sbjct: 289 SLLKNDFAKKPLKH-KNSSGEVKLEAEK-------------EFTEAWKPLLTTDQIARE- 333 Query: 129 PKWSASILILYDAPYARNRTAIDRVDHLDPKVMTANYPPSWRTPKWNHHGLWDWKARDVL 188 A+++ YDAPY+ N TA VDH+DPK M NYPPSW+TPKWNHHG+WD+ AR++L Sbjct: 334 KGMGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKTPKWNHHGIWDYNARNLL 393 Query: 189 VQTTGFFNPRRHPDWFDQGQAVAENTQTGFDTDDTDNKKQGFRKQGEQSPAPIALPFEAY 248 +QTTGFFNPRRHP+WFD+GQA A+NT GF DTD+KK GF+K S +PIALPFEAY Sbjct: 394 LQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTDHKKDGFKK---NSSSPIALPFEAY 450 Query: 249 FANIGNLTWFGQALLVFG 266 FANIGN+ G ++ +FG Sbjct: 451 FANIGNMVAIGNSVFIFG 468 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508202|ref|NP_110151.1| hypothetical protein MPN463 [Mycoplasma pneumoniae M129] (157 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508203|ref|NP_110152.1| involved in cytadherence [Mycoplasma pneumoniae M129] (445 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 351 7e-099 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 351 bits (901), Expect = 7e-099, Method: Compositional matrix adjust. Identities = 191/399 (47%), Positives = 247/399 (61%), Gaps = 47/399 (11%) Query: 46 FQKYLNTTQALHQMGVIVPSLETWPGKPSTGIATRAAGGVSVQAATRQSTSTNEDLSNVI 105 F KYLNT QAL +G++ ++ NVI Sbjct: 265 FNKYLNTKQALESIGILF---------------------------------DDQTPRNVI 291 Query: 106 TQLYHTSTSQLAYLNGQIVVMGSDRVPSLWYWVVD---ERTTSGRATWWAHTELNWGTDK 162 TQLY+ STS+LA N IVVMG+ +PS+WYWVV+ + S + TW+A+T L+WG DK Sbjct: 292 TQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWGEDK 351 Query: 163 QKQFVENQLGFXXXXXXXXXXXXXXAQGLTQPAYLIAGLDVVADHLVFAAFKAGAVGYDM 222 QKQFVENQLG+ ++ TQPAYLI+G+D V D ++F+ FKAG+VGYD Sbjct: 352 QKQFVENQLGYKETTSTNSHNFH--SKSFTQPAYLISGIDSVNDQIIFSGFKAGSVGYDS 409 Query: 223 TTDSNAS---TKDQVLAWSTTAGLDSDGGYKALVENTAGLNGPINGLFILLDTFAYVTPV 279 ++ S++S TKDQ LAWSTT LDS GYK LV N GLNGPING F + DTF++V P Sbjct: 410 SSSSSSSSSSTKDQALAWSTTTSLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFVVPY 469 Query: 280 SGMKGGSKNTEAVQTKYPVKDDSKASAKIASLINASPLNSYGDDGVTVFDALGLNFNFKL 339 SG + T ++T YPVK D K++ KI SLINA+PLNSYGD+G+ VFDALGLN+NFK Sbjct: 470 SGNHTNNGTTGPIKTAYPVKKDQKSTVKINSLINATPLNSYGDEGIGVFDALGLNYNFKS 529 Query: 340 DEARLPSRTDQLLVYGIVNESELKSARENAQSTSDDNSNTKVKWTNTASHYLPVPYYYSA 399 ++ RLPSRTDQ+ VYGIV+ +EL+SA+ +A ST D TKV W+NT S YLPVPY YS Sbjct: 530 NQERLPSRTDQIFVYGIVSPNELRSAKSSADSTGSD---TKVNWSNTQSRYLPVPYNYSE 586 Query: 400 NFPEAGNRRRAEQRNGVITI---KKAIYPEVRGRQLQNI 435 +A +R E R +T K+I P+ + N Sbjct: 587 GIIDADGFKRPENRGASVTTFSGLKSIAPDGFANSIANF 625 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508204|ref|NP_110153.1| hypothetical protein MPN465 [Mycoplasma pneumoniae M129] (199 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508205|ref|NP_110154.1| hypothetical protein MPN466 [Mycoplasma pneumoniae M129] (140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508206|ref|NP_110155.1| hypothetical protein MPN467 [Mycoplasma pneumoniae M129] (101 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508207|ref|NP_110156.1| hypothetical protein MPN468 [Mycoplasma pneumoniae M129] (208 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508208|ref|NP_110157.1| hypothetical protein MPN469 [Mycoplasma pneumoniae M129] (243 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072992.1| hypothetical protein MG323.1 [Mycoplasma genita... 233 1e-063 >ref|NP_072992.1| hypothetical protein MG323.1 [Mycoplasma genitalium G-37] Length = 269 Score = 233 bits (595), Expect = 1e-063, Method: Compositional matrix adjust. Identities = 133/243 (54%), Positives = 174/243 (71%), Gaps = 1/243 (0%) Query: 1 MSKINDKLTEINTVEYEVASKHSQYLFYSRFGLLDTAAYFLFLLSFFVTAVMFLVGIFHT 60 ++KI+DKL+EIN EY+V SKHS YLFYSRFGLLDT YFLF L FF+ V+FL G+FHT Sbjct: 28 INKISDKLSEINVAEYQVVSKHSNYLFYSRFGLLDTFVYFLFFLCFFLNNVLFLAGVFHT 87 Query: 61 EQFTLNDQNQGISGFYLFWNVKKPADIFNANFVYSISSFGIAILALGLFSLFLMIFLGYR 120 +QFT N+ N G + FYLFW V+KP DI A+ Y IS +GIA L GL SL L++FL +R Sbjct: 88 KQFTFNEVN-GFNQFYLFWTVEKPTDIIQASITYQISQYGIANLVFGLISLALLVFLSFR 146 Query: 121 WAISLFIKSQITKWERVIFSTGFYFSVVAYCFWIALMLLFLVLSDQHFFPRTTTQLKSNP 180 W +SLF KSQ TKWER+ ++TGF+ S+V Y WI LM+LFLVL DQ FF R T +++S Sbjct: 147 WTVSLFFKSQTTKWERIGYTTGFFISIVVYLLWILLMVLFLVLLDQQFFERDTQKIQSAT 206 Query: 181 NLSLFFRISHKDNVFSSRLNQLGAFATALCITLVVYELPFLGLFAFNWNKQRAKAIFCRK 240 SLFF + + + V+ S+LN G FATA I+LV Y F+ +FAFN+NK + K +F + Sbjct: 207 RFSLFFNVENNNGVYLSKLNSFGVFATAWAISLVFYSFFFIAIFAFNYNKTKLKQLFKKS 266 Query: 241 RKQ 243 + + Sbjct: 267 KAK 269 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508209|ref|NP_110158.1| X-Pro dipeptidase [Mycoplasma pneumoniae M129] (354 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072993.1| aminopeptidase P (pepP) [Mycoplasma genitalium ... 595 e-172 >ref|NP_072993.1| aminopeptidase P (pepP) [Mycoplasma genitalium G-37] Length = 354 Score = 595 bits (1534), Expect = e-172, Method: Compositional matrix adjust. Identities = 278/354 (78%), Positives = 313/354 (88%) Query: 1 MHNELQQKLAVLHKLLQDNKADAILIGSDQNRFWLTGFPSSAGWLVVHKQRVNLFIDGRY 60 M +ELQQK+ VL LL+ NKADAILIGSDQNRFWLT FPSSAGWL++ + LFIDGRY Sbjct: 1 MISELQQKITVLKDLLKTNKADAILIGSDQNRFWLTNFPSSAGWLIITSNKAKLFIDGRY 60 Query: 61 FEAAKTAIDPLVKVELFTTYKQVKALCEQVGVKHLLIEGDYLTFNYQNFIKELCAQYTVI 120 +EAA+ I+P+V+VELF ++KQVKA CE G+ HLLIEGDYLTFNYQ++I+ +C QYTVI Sbjct: 61 YEAARNFINPIVEVELFVSFKQVKAFCESNGINHLLIEGDYLTFNYQDWIQAICKQYTVI 120 Query: 121 NAQEIRRQKLPSEILAIEKVVEITRKVAVKLKRFIQPGMTELFIAQWITDQLVKAGGAKN 180 NAQEIRR KLPSEI AIEK V+ITRKVAVKLKRFI+P MTELFI+QWIT++LVK GGAKN Sbjct: 121 NAQEIRRVKLPSEIQAIEKAVDITRKVAVKLKRFIKPKMTELFISQWITNELVKQGGAKN 180 Query: 181 SFDPIVATGKNGANPHHKPSKLKVKSGDFVTCDFGTIYNGYCSDITRTFLVGKKPNNEVL 240 SFDPIVATGKNGANPHHKP+K VK GDF+TCDFGTIYNGYCSDITRTFLVGKKP + L Sbjct: 181 SFDPIVATGKNGANPHHKPTKTIVKEGDFITCDFGTIYNGYCSDITRTFLVGKKPKSAKL 240 Query: 241 LKAYKKVDEANMAGINAANTQLTGAEVDKVCRDIIEASEFKDYFVHSTGHGVGLDIHEMP 300 L AYKKV+EAN+AGINA NT LTG++VDKVCRDIIE SEFKD+FVHSTGHGVG+DIHEMP Sbjct: 241 LSAYKKVEEANLAGINAVNTTLTGSQVDKVCRDIIENSEFKDFFVHSTGHGVGIDIHEMP 300 Query: 301 NVSTSYNKLLCENAVITIEPGIYIPSVGGIRIEDMVLVKDHKSVWLSAKIPRAF 354 NVS SYNKLLCEN V+TIEPGIYIP++GGIRIEDMVLVK KSVWLS IPRAF Sbjct: 301 NVSQSYNKLLCENGVVTIEPGIYIPNLGGIRIEDMVLVKKEKSVWLSKSIPRAF 354 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508210|ref|NP_110159.1| ribosomal protein L33 [Mycoplasma pneumoniae M129] (53 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072994.1| ribosomal protein L33 (rpL33) [Mycoplasma genit... 78 2e-017 >ref|NP_072994.1| ribosomal protein L33 (rpL33) [Mycoplasma genitalium G-37] Length = 53 Score = 77.8 bits (190), Expect = 2e-017, Method: Compositional matrix adjust. Identities = 37/39 (94%), Positives = 38/39 (97%) Query: 1 MAVKRSTRLGCNDCREINYLTFKNVKKNPEKLALNKFCS 39 MAVKRSTRLGCN+C EINYLTFKNVKKNPEKLALNKFCS Sbjct: 1 MAVKRSTRLGCNECSEINYLTFKNVKKNPEKLALNKFCS 39 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508211|ref|NP_110160.1| hypothetical protein MPN472 [Mycoplasma pneumoniae M129] (293 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072995.1| hypothetical protein MG326 [Mycoplasma genitali... 412 e-117 >ref|NP_072995.1| hypothetical protein MG326 [Mycoplasma genitalium G-37] Length = 295 Score = 412 bits (1058), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/291 (69%), Positives = 238/291 (81%), Gaps = 2/291 (0%) Query: 2 KTAIITDSTASIKEGEIQDVYVLPLQVIINGQDTYRDGKDIDYDRVYQLLKEHPQGLNIS 61 KTAIITDSTASIK GEI VY+LPLQVI++G+ ++RDG +IDYD V++LLKE+P GLNIS Sbjct: 3 KTAIITDSTASIKPGEINGVYILPLQVIVDGEKSFRDGIEIDYDHVHKLLKENPHGLNIS 62 Query: 62 TSLPRQADLIELIEAIKDKYDRFVFLPLSKGLSGTYDMIVQAVKPLS--TPKKEFVVLET 119 TSLPRQ+DL+++ E IK KYDRF+FLPLSKGLSGTYDM+VQ K LS KEF+V ET Sbjct: 63 TSLPRQSDLLKIFEEIKTKYDRFIFLPLSKGLSGTYDMLVQLAKELSEQNKDKEFLVFET 122 Query: 120 SDIAISLKWLVQEVKALTDTNCPTKAIAEVVDQHKQSIFTAVTVKNLVQLRKGGRISGLK 179 SDIAISLKWLV+++KAL D C + I V+ HKQ+I +AVT+KNLVQ+RKGGRISGLK Sbjct: 123 SDIAISLKWLVEDIKALVDKGCDNQTIKAKVESHKQNILSAVTLKNLVQMRKGGRISGLK 182 Query: 180 KIIATLLRVKPIIFFDKGVNTLSGKAFTFVQALEKIFTFVKSKFGDNFKIKRIGFCNAFT 239 K I TLLRVKPII FDKGVNTL K F+F QA+EKIF FVK+KFGDN+KIKRIGFC +F Sbjct: 183 KFITTLLRVKPIILFDKGVNTLGAKVFSFSQAVEKIFGFVKTKFGDNYKIKRIGFCYSFC 242 Query: 240 PVKAKEVKALILDFLHTNKITLQREIESSFITSAIIAHTGIDAFSISLLLD 290 A E+K +I DF+ NKI Q EIE++FITS II HTGIDAFSISLL+D Sbjct: 243 KNYANEIKKIITDFIEHNKINFQNEIENAFITSVIIVHTGIDAFSISLLID 293 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508212|ref|NP_110161.1| triacylglycerol lipase (lip) 2 [Mycoplasma pneumoniae M129] (268 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072996.1| lipase/esterase, putative [Mycoplasma genitaliu... 379 e-107 ref|NP_072977.1| lipase/esterase, putative [Mycoplasma genitaliu... 84 1e-018 ref|NP_073014.1| lipase/esterase, putative [Mycoplasma genitaliu... 71 9e-015 >ref|NP_072996.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length = 268 Score = 379 bits (974), Expect = e-107, Method: Compositional matrix adjust. Identities = 176/266 (66%), Positives = 219/266 (82%) Query: 1 MASSKSDPFQSIFAFKPHRKRHNFIFLHGFGSEYSSFKHVFKLFEKKRWSFFAFNFPGHG 60 + S+K+ F SIFAFKP ++++ FIFLHGFGSEY+SF +F LF+KK+W FF FNFPGHG Sbjct: 2 LTSNKNTLFNSIFAFKPKKRKNVFIFLHGFGSEYASFSRIFSLFKKKKWPFFTFNFPGHG 61 Query: 61 NNQSNSVDELKLKHYVELVCDFIIQKRLKKVVLVGHSMGGAIAVLVNAVLRERIKALVLV 120 +N+S D+LKL H+V+LVCDFI+QK+L V+L+GHSMGGA+AVLVN V+ +IKAL+LV Sbjct: 62 DNESTDTDQLKLNHFVDLVCDFIVQKKLNNVILIGHSMGGAVAVLVNKVIPLKIKALILV 121 Query: 121 APMNQTSFVVSKKRILDTLFTRSPKNQQDFIEHTDDKKSIVNFFVGAFKKRVNFKTLYSD 180 APMNQTSF V+KKRILDT F R+ N +DF+EH + +KS++ + AFKKR FKTLYSD Sbjct: 122 APMNQTSFSVNKKRILDTFFKRNNSNHKDFVEHEEKRKSLLKIAINAFKKRTTFKTLYSD 181 Query: 181 MVQNAKYGNDYLEAGYNAIKDKPTLVVLGSNDIVTPTKASVEYLAKHSETIIFKIIDGVG 240 MVQNAKYGND LE Y I +KPTLV+LG+NDIVTPTKASV+YLA S+ IIFK+IDGVG Sbjct: 182 MVQNAKYGNDSLERAYEMIGNKPTLVILGANDIVTPTKASVDYLANKSDKIIFKVIDGVG 241 Query: 241 HSPHYYAPKLFFDYIGEFLDNIKRNK 266 HSPH APKLFFDY+ EFLDN+K+ + Sbjct: 242 HSPHDSAPKLFFDYVLEFLDNLKKQR 267 >ref|NP_072977.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length = 268 Score = 84.3 bits (207), Expect = 1e-018, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 24/231 (10%) Query: 48 RWSFFAFNFPGHGNNQSNSVDELKLKHYVELVCDFIIQKRLKKVVLVGHSMGGAIAV-LV 106 R+SF+A N+PGHGN+ N+ +L+ +++E+ F + LK V+L GHS+GG +AV L Sbjct: 45 RYSFYAINYPGHGNSVINNPKQLEFSYWLEITKQFFDKHNLKDVILFGHSIGGGLAVALT 104 Query: 107 NAVLRERIKALVLVAPMNQTSFVVSKKRILDTLFTRSPKNQQDF------IEHTDDKKSI 160 N + ++ KA++L AP+N + V + I+ L P DF + + +KK Sbjct: 105 NYLSSDQYKAVLLEAPLN-PAIVETPLNIVQNLI---PDPDSDFAVIQKCLVYNIEKKLG 160 Query: 161 VNFFVGAFKKRVNFKTLYSD-----MVQNAKYGNDYLEAGYNAIK-DKPTLVVLGSNDIV 214 NF + +R K+++ + M++ + + + +K + P L + G D + Sbjct: 161 ANF--KEYCEREKQKSIHQNQRLKVMLEPSTLKQNIVLINAAFLKLNCPALWIHGKQDGI 218 Query: 215 T---PTKASVEYLAKHSETIIFKIIDGVGHSPHYYAPKLFFDYIGEFLDNI 262 P+KA E L +++ I FK I+ H+P++ P+ F + +F I Sbjct: 219 IKYLPSKAYYESL--NNKQIQFKAIEAAAHTPYFEQPQKFLSLVNDFFQLI 267 >ref|NP_073014.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length = 273 Score = 71.2 bits (173), Expect = 9e-015, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 46/235 (19%) Query: 15 FKPHRK--RHNFIFLHGFGSEYSSFKHVFKLFEKKRWSFFAFNFPGHGNNQSNSVDELKL 72 F+P +K + +F HGF +S F+ +K + ++A +PGH N + EL Sbjct: 19 FQPAKKTKKQTVVFAHGFSVFHSYFQSFYKTLTD--YDYYAPLWPGHNVNGFD-YKELSP 75 Query: 73 KHYVELVCDFIIQKRLKKVVLVGHSMGGAI-AVLVNAVLRERIKALVLVAPMNQTSFVVS 131 HY EL+ FI K L+ +VL+GHSMG A+ + +N + +R++ L+L+AP++ + + Sbjct: 76 IHYGELLAAFIENKDLENIVLIGHSMGAAVCSYAMNLLNAKRVEKLILLAPLSYCNLL-- 133 Query: 132 KKRILDTLFTRSPKNQQDFIEHTDDKKSIVNFFVGAFKKRVNFKTLYSDMVQNAKYGNDY 191 R K + F D + + NF + F+T +S++ + N+ Sbjct: 134 ----------RYFKIKSSF--KKDKAERMANF-------KAMFQTKFSNLTDENSWENEL 174 Query: 192 L-------EAGYNAIKDKPTL------------VVLGSNDIVTPTKASVEYLAKH 227 + N +K+ P L +VL ND+ PTK ++ Y K+ Sbjct: 175 SKHSKMAKKLSNNILKELPVLNKTYKNLKLPVFLVLAQNDLFMPTKLTLSYFNKY 229 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508213|ref|NP_110162.1| coiled coil protein, putative structural protein involved in cytosceleton [Mycoplasma pneumoniae M129] (1033 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072997.1| hypothetical protein MG328 [Mycoplasma genitali... 149 1e-037 >ref|NP_072997.1| hypothetical protein MG328 [Mycoplasma genitalium G-37] Length = 756 Score = 149 bits (376), Expect = 1e-037, Method: Compositional matrix adjust. Identities = 111/287 (38%), Positives = 158/287 (55%), Gaps = 56/287 (19%) Query: 745 QQQFHQAQNELDAAHQQLALFKQNNEELTDKCSNIQNELHDLNRVKTNWENLNTEHNLLQ 804 QQQ +QN + A +LA ++ N L +K +++++EL + EN N NLL Sbjct: 524 QQQLKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDEL-------SGSENSN---NLL- 572 Query: 805 DKYAQQKEQMQHEHSNLAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLLSAY 864 A++QA+HE+LQESY K+K + +++ LN+AN QYQDLLSA+ Sbjct: 573 -----------------AKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAF 615 Query: 865 ELLQSNHNKLKQELQVLNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQATPP 924 E S K KQ L + E QL Q++++ L+ A LQ TP Sbjct: 616 EETNSELEKAKQSLSASDS---ENNQLKQQINS--------------LENAKKELQFTPV 658 Query: 925 VSDELLEQFNQVQLEKQRLLQQNLALVHELQYFNELNSSQTHEIKTKQDETXXXXXXXXX 984 SDE L++ +++EK++L +N AL ++LQYFN+++++QT EIK DE Sbjct: 659 TSDEHLDELETLKIEKEQLFLENQALQNQLQYFNDISANQTEEIKEASDED--------- 709 Query: 985 XXXXXXXXXXRLKKRDIVIENKEDALGKLSKKERIQAYAERLAKING 1031 R+KKRD VI+NK+D L KLSKKERIQAYAERLAKIN Sbjct: 710 --KPVEIKKPRIKKRDFVIQNKDDKLAKLSKKERIQAYAERLAKINA 754 Score = 96.3 bits (238), Expect = 1e-021, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 170/364 (46%), Gaps = 29/364 (7%) Query: 433 EENRTLKQHLQNNLPEANQLNFVXXXXXXXXXXDKHSLTLQIEQYKFDSKKHQEQLALIP 492 +ENR L + LQN N L+ +K L+ Q++ K S Q+QLAL+P Sbjct: 299 QENRDLYEQLQNKPVAINPLSDEVNEELENLKQEKALLSDQLDALKNKSSNVQQQLALLP 358 Query: 493 SLRSEINSLETEVISLKQTNQRLSLIERENNFLKTEIKQLRETKLNDENTKYRNLLKQYE 552 L ++IN L+ ++++ ++ NQRL L+E+EN+FLK E+K+L + NDEN KY +LL QYE Sbjct: 359 VLNNQINELQNQLLTAREANQRLDLVEQENDFLKNELKKLHDNTSNDENEKYDDLLNQYE 418 Query: 553 LMRADSDXXXXXXXXXXXXXXXXXXXXXXXXXRHNEALVKELDQVKATNFELGLAAQGFE 612 L+ +++ N+ L+ E++ ++ + + FE Sbjct: 419 LLFDENETKFDKLQVKQQALNLDYQKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFE 478 Query: 613 QQKVVLEQKNSSLLASLQAAEENVQALGITNSELQNQLNVLEFTHKEKTAFDSXXXXXXX 672 +QK L++K + L I N +LQ+++ LE ++EK+ ++ Sbjct: 479 EQKKALDEK--------------LNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQ 524 Query: 673 XXXXXXXFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQSDENXXXXXXXXXXXXX 732 ++ Q++LAT ++ N +L +K+ E +L+ + S+ Sbjct: 525 QQLKDSQNLFNVAQDKLATLEEVNLALNEKINDLEDELSGSENSNNLLAKLQADHEILQE 584 Query: 733 SYNKLQ-----------DEANHTQQQ----FHQAQNELDAAHQQLALFKQNNEELTDKCS 777 SY KL+ ++AN Q F + +EL+ A Q L+ N +L + + Sbjct: 585 SYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSASDSENNQLKQQIN 644 Query: 778 NIQN 781 +++N Sbjct: 645 SLEN 648 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508214|ref|NP_110163.1| GTPase, GTP binding [Mycoplasma pneumoniae M129] (449 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072998.1| conserved hypothetical GTP-binding protein [Myc... 672 0.0 ref|NP_072668.1| thiophene and furan oxidation protein (tdhF) [M... 72 1e-014 >ref|NP_072998.1| conserved hypothetical GTP-binding protein [Mycoplasma genitalium G-37] Length = 448 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/444 (73%), Positives = 379/444 (85%), Gaps = 1/444 (0%) Query: 1 MFTVAIIGRPNVGKSSLFNRLIQKPYAIISDTPNTTRDRIYGVGEWLTRQIAFIDTGGLI 60 MFTVAIIGR NVGKS+LFNRLIQKP AI+SDTPNTTRDRI+G+GEWL R+IAFIDTGGLI Sbjct: 1 MFTVAIIGRTNVGKSTLFNRLIQKPMAIVSDTPNTTRDRIFGIGEWLKRKIAFIDTGGLI 60 Query: 61 SQKTPLQQQIEVQVRAALSQANAIIFLVSYQEQISSDDFYVAKVLKKIKDKPILLVVNKS 120 +++TPLQQ I +QV+AALSQA AIIFLVS QEQ++SDDFYVAKVLKK KDKP++LVVNK+ Sbjct: 61 AKQTPLQQLIALQVQAALSQAKAIIFLVSLQEQLNSDDFYVAKVLKKNKDKPVILVVNKA 120 Query: 121 ENLKPDAYEPNLQQFYSFGFGQPVCVSASHGIGIGNLMDRLVKDNQLPPYHGSSETNPEV 180 EN P E L+ +YS GFG+PV +SA+HGIGIG+LMD LVK NQL P + + ++ Sbjct: 121 ENFNPKTAEETLKDYYSLGFGRPVVISAAHGIGIGDLMDLLVKQNQLLPNENNDDL-AKI 179 Query: 181 RFCVIGKPNVGKSSLINQLVQQNRVLVSDESGTTRDAIDIPLRVNGQNYLLIDTAGIRRK 240 RFCVIGKPNVGKSSLINQLV+QNRVLVS+ESGTTRDAID+PL+VNG+ +LLIDTAGI+RK Sbjct: 180 RFCVIGKPNVGKSSLINQLVKQNRVLVSNESGTTRDAIDVPLKVNGEKFLLIDTAGIKRK 239 Query: 241 GKIAPGIEAASYGKTQLAIARSNIILLMVDGSKPLSEQDEIIGGLAQAALIPVIILVNKW 300 GKI GIE ASY KT+LAIARSN+ILLMVDGSKP+SEQDE+IGGLAQAALIPVIILVNKW Sbjct: 240 GKINMGIETASYIKTKLAIARSNVILLMVDGSKPISEQDEVIGGLAQAALIPVIILVNKW 299 Query: 301 DLVQKDSNTMAKFKKQLQSQFQHLSFAPIVFISVKNNKRLHXXXXXXXXXXXXXXXXXST 360 DLV K++NT +KK L+ F+HL FAP++FISV N+RL+ +T Sbjct: 300 DLVLKNNNTTNAYKKMLKLHFKHLDFAPVLFISVLKNQRLNTIFEQLKIIQSQLETKVAT 359 Query: 361 SLLNDVIQQAQLFNQAPLFKGGRLQVTYAVQTHSQTPHFVLFCNDPKFVHFSYARFLENK 420 LLNDVIQQAQL+NQ PLFKG RLQ+TYAVQT SQ PHFVLFCNDPK++HFSYARFLENK Sbjct: 360 PLLNDVIQQAQLYNQPPLFKGKRLQITYAVQTKSQIPHFVLFCNDPKYLHFSYARFLENK 419 Query: 421 IRESFGFSAVPITLYFKSKNARIR 444 IRE+FGF++VPI+LYFKSKNARIR Sbjct: 420 IRENFGFNSVPISLYFKSKNARIR 443 >ref|NP_072668.1| thiophene and furan oxidation protein (tdhF) [Mycoplasma genitalium G-37] Length = 442 Score = 71.6 bits (174), Expect = 1e-014, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 61/94 (64%), Gaps = 3/94 (3%) Query: 181 RFCVIGKPNVGKSSLINQLVQQNRVLVSDESGTTRDAIDIPLRVNGQNYLLIDTAGIRRK 240 + +IG+ NVGKSSL+N L+ Q++ +VS+ G+TRD ++ +NG ++DTAGIR+ Sbjct: 219 KIAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKH 278 Query: 241 GKIAPGIEAASYGKTQLAIARSNIILLMVDGSKP 274 G+E A K+ +I ++N+++ ++D + P Sbjct: 279 ---KSGLEKAGIKKSFESIKQANLVIYLLDATHP 309 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508215|ref|NP_110164.1| cytidylate kinase [Mycoplasma pneumoniae M129] (217 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072999.1| cytidylate kinase (cmk) [Mycoplasma genitalium ... 305 3e-085 >ref|NP_072999.1| cytidylate kinase (cmk) [Mycoplasma genitalium G-37] Length = 217 Score = 305 bits (781), Expect = 3e-085, Method: Compositional matrix adjust. Identities = 142/217 (65%), Positives = 182/217 (83%) Query: 1 MYFQIAIDGPSSSGKSSVAKTVARQLGFEYFSTGKMYRAFAYVMQVNRLDVNLLLKVINQ 60 M +QIAIDGPSSSGKSSVAK +A +L F YFS+GKMYRAFAYVMQVNRL+++L LK+INQ Sbjct: 1 MNWQIAIDGPSSSGKSSVAKKIAEELDFFYFSSGKMYRAFAYVMQVNRLNIDLFLKIINQ 60 Query: 61 INWRFEHEKVFYNNADISEVILNQEIAQLASNLATNPEVRKMAVLRQQALAKNTNIVMDG 120 INWRFE + V+YNNADI+ VI Q +A +AS +A +P +RK+AV++QQ LA+N NIVMDG Sbjct: 61 INWRFEKDAVYYNNADITTVITTQSVANIASKIAVDPNIRKIAVIKQQKLAENKNIVMDG 120 Query: 121 RDIGTVVLKDAQLKYFLDAKPEIRAQRRAQDLGIAYDSDKAFQELVAEIKHRDAVDTSRT 180 RDIGTVVLK+AQLK+FLDAK EIRAQRR QD+GI+ ++K +EL+ E+K RD +D+SRT Sbjct: 121 RDIGTVVLKNAQLKFFLDAKVEIRAQRRLQDMGISLSNEKKLKELIQELKQRDQIDSSRT 180 Query: 181 ADPLVQAPDAIYIDSSNLTFQQVVELMVQQARTVFKL 217 ADPL +A DAIY+D+S L+F VV+ +++A+ VFKL Sbjct: 181 ADPLKKAQDAIYLDTSELSFDAVVKQTLKEAKKVFKL 217 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508216|ref|NP_110165.1| hypothetical protein MPN477 [Mycoplasma pneumoniae M129] (209 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073000.1| hypothetical protein MG331 [Mycoplasma genitali... 159 2e-041 >ref|NP_073000.1| hypothetical protein MG331 [Mycoplasma genitalium G-37] Length = 212 Score = 159 bits (402), Expect = 2e-041, Method: Compositional matrix adjust. Identities = 72/163 (44%), Positives = 110/163 (67%) Query: 1 MGRLEKFRFYRQNDDNNTTVQKALLKAQKQVASWKVELDELSPKILSHYQPFSELSANPV 60 MGR+EKFRFYRQ+ DNN V+KAL+ AQK SWK +L++++ KIL +Y PFSE + NPV Sbjct: 1 MGRVEKFRFYRQSFDNNKIVKKALINAQKNTESWKKQLNKINQKILINYHPFSEFNKNPV 60 Query: 61 KRKSEPNQVLQSLQTLINNFQTSDFQAIATQADALWLQIKHHDSATGYESWITDDRGMDK 120 K +EPN++ ++LQ LI + + +DF+ + + D +WL ++ +++GYESWI+DD+G++K Sbjct: 61 KHHTEPNKLFKTLQELIVDLKNTDFKLLEEKVDRMWLNAAYNQTSSGYESWISDDKGIEK 120 Query: 121 IDNLKRFFEDNEXXXXXXXXXXXXXLGNYNKALMALTNEKVSF 163 I++L +F+E NE L YNK L + E +F Sbjct: 121 INHLSKFYEANEKQWLKKTSNLTSDLKEYNKILTVFSTESFAF 163 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508217|ref|NP_110166.1| similar to spore coat protein [Mycoplasma pneumoniae M129] (235 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073001.1| hypothetical protein MG332 [Mycoplasma genitali... 318 3e-089 >ref|NP_073001.1| hypothetical protein MG332 [Mycoplasma genitalium G-37] Length = 239 Score = 318 bits (815), Expect = 3e-089, Method: Compositional matrix adjust. Identities = 161/234 (68%), Positives = 183/234 (78%) Query: 1 MPRKHLIASQTNKKQQSNAKQLQKLAKRIAAAVKKGGSNIDANPQLKVAVELALAHGLSA 60 MPRKHLIA+QTNKKQQ++AKQLQKLAKRIA+AVKKGG+NI +NP LKVAV+LALA GLS Sbjct: 1 MPRKHLIANQTNKKQQTSAKQLQKLAKRIASAVKKGGTNIQSNPHLKVAVDLALAKGLSM 60 Query: 61 DSIKRNIHGSEKDPTKLSEFCYEIFGPNGVGIIVFGLTDNPNRLLSSLNGYIAKLKAQLA 120 DSIKRNIHGSEKD TK+SEFCYEIFGPNGVGIIVFGLTDNPNRLLSSLNGY+AKLK QLA Sbjct: 61 DSIKRNIHGSEKDTTKISEFCYEIFGPNGVGIIVFGLTDNPNRLLSSLNGYLAKLKGQLA 120 Query: 121 KPNSVKINFEEKGIALVKHNNFTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSYFAL 180 KPNSVKINF+E+GI V NN+ + SYF Sbjct: 121 KPNSVKINFQEEGIIFVNKNNYLKDDLIELLILDNINLIDVDYDEECFEISLHSNSYFHA 180 Query: 181 KDLLVKNSFTIEASELRLIPLLTVELNAEQHTLLNRFLNACEEDDDIQTVVHNA 234 K+LL KN+F+I SE++L+PLLTV+L+ Q TLL+RFLNACEEDDDIQ VVHNA Sbjct: 181 KELLKKNNFSIVDSEIKLVPLLTVDLDRNQQTLLSRFLNACEEDDDIQFVVHNA 234 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508218|ref|NP_110167.1| ACYL CARRIER PROTEIN PHOSPHODIESTERASE [Mycoplasma pneumoniae M129] (197 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_077807.1| acyl carrier protein phosphodiesterase [Mycopla... 323 9e-091 >ref|NP_077807.1| acyl carrier protein phosphodiesterase [Mycoplasma genitalium G-37] Length = 197 Score = 323 bits (827), Expect = 9e-091, Method: Compositional matrix adjust. Identities = 151/197 (76%), Positives = 173/197 (87%) Query: 1 MKKVIIIDASVSPSGSYTHLLLERFLATFQAKNKDVELSTWNLNELPVGQISYNTQNAGT 60 MKKVII+DASV+PSGSYTHLLL+RFL T++ +N VE WNLNELPVG+ISYNTQNA Sbjct: 1 MKKVIIVDASVTPSGSYTHLLLDRFLQTYKKQNSSVEFIDWNLNELPVGKISYNTQNASN 60 Query: 61 FFSVENSDKYIDALKAAHGVIILAPMTNFNYPATLKNFIDHVFVANKTFKDKYVTKGASS 120 FFS ENSD YIDALK A+G++ILAPMTNFNYPA+LKNFIDHVFVANKTF+DKYVTKGAS Sbjct: 61 FFSFENSDYYIDALKTAYGIVILAPMTNFNYPASLKNFIDHVFVANKTFQDKYVTKGASK 120 Query: 121 GMLGNLKVVVLGSQGAPLGWYPWGDHVNSLRGLFGFAGVASFASVIIDGTKLLYKDKSKS 180 G+L NLKVVVL SQGAPLGWYPW DHV++L+GLFGFAGV F SV+ID TK+LYKDK+K Sbjct: 121 GLLTNLKVVVLASQGAPLGWYPWADHVSNLKGLFGFAGVTHFESVLIDDTKILYKDKNKQ 180 Query: 181 EVVDMFAKQVDAIANEF 197 EVVD+FA +VD +AN F Sbjct: 181 EVVDLFAHKVDQVANNF 197 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508219|ref|NP_110168.1| valyl-tRNA synthetase [Mycoplasma pneumoniae M129] (838 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycoplasma genita... 1095 0.0 ref|NP_073015.1| isoleucyl-tRNA synthetase (ileS) [Mycoplasma ge... 143 5e-036 ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycoplasma genit... 67 6e-013 >ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycoplasma genitalium G-37] Length = 837 Score = 1095 bits (2833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/837 (62%), Positives = 644/837 (76%), Gaps = 1/837 (0%) Query: 1 MDKQFSFQGQYDFKTVSTGLYDSWSSASFFKPQKNKVPFTAILPPPNLTGTLHIGHAFEV 60 M +FSFQ YDF VS GLY+ W++A FFKP+ FTAILPPPNLTGTLHIGHAFEV Sbjct: 1 MKDKFSFQKNYDFNLVSDGLYEIWNNAGFFKPKDKNNSFTAILPPPNLTGTLHIGHAFEV 60 Query: 61 SITDQIMRFKRLRGYGVNWIPGFDHAGIATQTKYEKLARETNPEYFQAPRKQKVKMIMDW 120 SITDQIMRFK+++G+ +NWIPGFDHAGIATQTKYEK+A + N +YF A +K +MIM+W Sbjct: 61 SITDQIMRFKKMQGFSINWIPGFDHAGIATQTKYEKIALKENQKYFDADDDKKSEMIMNW 120 Query: 121 ALTQGDTIQSQIKSLGASLNWNQVNFTLSKKASQIVNDSFIQLFEQGFIYQAETLVNWDT 180 AL Q + I++Q+KSLG LNW++ FTLS++A++IVN+ F L+E GFIYQA TLVNWDT Sbjct: 121 ALNQSEIIKNQLKSLGVCLNWSETKFTLSEQANKIVNNCFKNLYENGFIYQAYTLVNWDT 180 Query: 181 KLNTAISNIEVINKPVDQQLYYIAYKLANNPKKRLVVATTRPETIFVDVCLFVHPKDKHY 240 KLNTAISNIEVINKPV+Q L+Y+ YKLAN+ K+ L+VATTRPETIF DVCL V+PKDK Y Sbjct: 181 KLNTAISNIEVINKPVNQHLHYVVYKLANDSKQELIVATTRPETIFADVCLLVNPKDKRY 240 Query: 241 HSFVKQKVVNPLTGALMPVFTDSYVDKKFGTGVLKCTPAHDFNDFALNEKYRLPFVSCID 300 +F + VVNPLTG +PV TDSYVD KFGTG+LKCTPAHDFND+ +N KY+ F+SCID Sbjct: 241 TNFWNKLVVNPLTGKQIPVVTDSYVDIKFGTGILKCTPAHDFNDYEINTKYKFDFLSCID 300 Query: 301 HNGLLNEHAKQFTGLTVSAARQQVVEFLQTQKLLVKTMPLTSNVGFSERSDTVVEPLLSK 360 NG+LN++A +F GL+V AR ++V++L+ KLLVK++PLTSNVGFSERS TVVEP+LSK Sbjct: 301 SNGILNQNASKFQGLSVLQARNKIVKWLEKNKLLVKSIPLTSNVGFSERSGTVVEPMLSK 360 Query: 361 QWFVDLPXXXXXXXXXXYPELIPKRFNKQVTRWLSQLKPWCISRQLIWGHPIPVWTHKQS 420 QWFVDLP YP+ IPKRFNKQV+ WL++LKPWCISRQLIWGH IPVW + Sbjct: 361 QWFVDLPKLKDHLYLKKYPDFIPKRFNKQVSNWLNKLKPWCISRQLIWGHKIPVWFENNT 420 Query: 421 GALHVGSTAPTDKQNYTQSTDVLDTWFSSSLWPLICLDWHKNKHFVPTDLLVTGYDILFF 480 G + VG + QNYT+S DVLDTWFSSSLWPLICL+W ++ F T+LLVTGYDILFF Sbjct: 421 GEIVVGEKPSKNLQNYTRSKDVLDTWFSSSLWPLICLNWEQDDSFHETELLVTGYDILFF 480 Query: 481 WVLRMTFNSYFQTKQLPFKQVLIHGLVRDAQNRKMSKSLNNGINPMDLIRDYGADATRLF 540 WVLRM FNS+F+TK+LPFK VLIHGLVRD QNRKMSKSLNNGI+P+DLIR+YGADA RLF Sbjct: 481 WVLRMLFNSFFETKKLPFKTVLIHGLVRDEQNRKMSKSLNNGIDPVDLIRNYGADAVRLF 540 Query: 541 LTSNHTPGDDLIFNEQKLKSAANFLNKLWNVTKYVLQLGEQAKTVPSTHLPSTLSERWIW 600 L SNHTPGDDLIF+EQK+KSA NFLNKLWNVTK+V+QL E + + +LSE WI Sbjct: 541 LCSNHTPGDDLIFSEQKIKSAWNFLNKLWNVTKFVIQL-ENDQEISYDLDKLSLSETWIL 599 Query: 601 AKLKQLIVQTTKLLDKYQLALANQALVNFIWNDFCNTFIETIKQEDTALLPQLYTTAKTV 660 AKL ++I + TKLLDK+QLALANQ LV F+W+DFCNTFIE IK+E L PQL+ TAK+V Sbjct: 600 AKLDKVIQKITKLLDKFQLALANQILVKFVWDDFCNTFIEAIKKEPNQLKPQLFYTAKSV 659 Query: 661 LSTAVVMLSTVTPFLAERIYQQFHSGSVMQASWPTAKAVKPPKLFADVVEAVSSLRHYKX 720 LS ++LS PFL+ERIYQQF++ SVMQA+WP A +K PKLF V+ A++ LR+Y+ Sbjct: 660 LSNIAILLSITVPFLSERIYQQFNNKSVMQATWPLATKIKIPKLFDLVLAAINDLRNYRK 719 Query: 721 XXXXXXXXXXXXXXSGKAAPVVQNYFHFNWVDLRIEVNKTPGFQIKIVDNAANNLAHLEK 780 SGK A V+ YF+F+W++L+IE NK F+ +IVD+ L L+K Sbjct: 720 QYMLNSQQKLVVILSGKNAVDVKQYFNFSWIELKIETNKKVSFKYQIVDDTTQRLKSLQK 779 Query: 781 QRSFYLAEVQRSQAITTNPAFLKKAPPHKVXXXXXXXXXXXXXXXXVNHLIAKLTKA 837 Q++F+ +EV+RSQAI N +FL+KAP KV N LIAKLTKA Sbjct: 780 QQAFFESEVKRSQAIVKNKSFLEKAPKEKVKSEFLKLEEYQKKLTETNQLIAKLTKA 836 >ref|NP_073015.1| isoleucyl-tRNA synthetase (ileS) [Mycoplasma genitalium G-37] Length = 895 Score = 143 bits (361), Expect = 5e-036, Method: Compositional matrix adjust. Identities = 191/821 (23%), Positives = 314/821 (38%), Gaps = 140/821 (17%) Query: 6 SFQGQYDFKTVSTGLYDSWSSASFFKPQK--NKVPFTAIL--PPPNLTGTLHIGHAFEVS 61 SF Q + T +D W F+ K NK IL PP G++H+GHA Sbjct: 13 SFAMQANLSTSEKNFHDFWKDKKVFQKLKKQNKGKQIKILHDGPPYANGSIHVGHALNKI 72 Query: 62 ITDQIMRFKRLRGYGVNWIPGFDHAGIATQTKYEKLARETNPE-YFQAPRKQKVKMIMDW 120 + D I+R GY V +IPG+D G+ E + NP Y +K K+ + Sbjct: 73 LKDFILRSWLYEGYDVVFIPGWDCHGLPI----EHAVSKKNPSSYSNLSTVEKRKLCHQF 128 Query: 121 ALTQGDTIQSQIKSLGASLNWNQVNFTLSKKASQIVNDSFIQLFEQGFIYQAETLVNWDT 180 AL+Q + Q + LG ++ +T+ + + F+Q ++G I+Q W Sbjct: 129 ALSQIAVQKEQFQRLGLLNDFQNCYYTIDESFQFKELELFLQAIKKGLIFQDLKPTYWSP 188 Query: 181 KLNTAISNIEVINKPVDQQLYYIAYKLAN----NPKKRLVVATTRPETIFVDVCLFVHPK 236 T+++ E+ K V+ Y+ +K++ + L+V TT P T+ + + +HP Sbjct: 189 ISRTSLAEAEIEYKEVNSIALYLTFKVSKSDFLDENANLLVWTTTPWTLPTNQAIAIHPD 248 Query: 237 -DKHYHSFVKQKVV----------NPLT-------------------------GALMPVF 260 D + +QK V N L ++PV Sbjct: 249 FDYLLFEYNQQKFVILEKLFEVFTNKLNWTNAIKLKKFKGSNLKNSSYSHCFYNKVLPVL 308 Query: 261 TDSYVDKKFGTGVLKCTPAHDFNDFALNEKYRLPFV-SCIDHNGLLNE--HAKQFTGLTV 317 +V GTG++ +PA +DF L +K ++ V ID G+ N + K+ Sbjct: 309 MGIHVVDNEGTGIVHSSPAFGIDDFYLCQKNKIKEVLISIDEKGVFNNLLNDKELENCFY 368 Query: 318 SAARQQVVEFLQTQKLLVKTMPLTSNVGFSERSDTVVEPLLSKQWFVDLPXXXXXXXXXX 377 A ++ L+ + + ++ RS T V SKQ F+ Sbjct: 369 LKANDLIINRLKQNNSFIFSEVISHREPHDWRSKTPVIYRASKQLFIKTKS--------- 419 Query: 378 YPELIPKRFNKQVTR--------------WLSQLKPWCISRQLIWGHPIPVWTHKQSGAL 423 I K+ KQ+ + L Q WCISRQ +WG PIP+ L Sbjct: 420 ----IKKQLKKQINQVNFLNSKNQLRLKEMLLQRDEWCISRQRVWGLPIPIVYANNKPLL 475 Query: 424 HVGSTAPTDKQ---------------------------NYTQSTDVLDTWF-SSSLWPLI 455 + T KQ Y + D LD WF S S + ++ Sbjct: 476 DFSTIQYTIKQLKKHGIDSWFEKDVTCFLKPDKTKKWVKYHKEIDTLDVWFDSGSSYNVL 535 Query: 456 CLDWHKNKHFVPTDLLVTGYDILFFWVLRMTFNSYFQTKQLPFKQVLIHGLVRDAQNRKM 515 + NK+ DL + G D W + Q +PFK ++ HG D KM Sbjct: 536 EI----NKYGSIADLYIEGSDQYRGWFNSSSNCGIIQNDLIPFKSLVSHGFTLDENGNKM 591 Query: 516 SKSLNNGINPMDLIRDYGADATRLFLTSNHTPGDDLIFNEQKLKSAANFLNKLWN-VTKY 574 SKSL N ++P+ + YGAD RL++ + D+ I LK A ++ N + ++ Sbjct: 592 SKSLGNIVDPLKICDQYGADILRLWVANTDWQIDNKI-GVNILKQVAEQYRRIRNSLLRF 650 Query: 575 VLQLGEQAKTVPSTHLPSTLSERWIWAKLKQLIVQTTKLLDKYQLALANQALVNFI-WND 633 +L +L ++ + K L+ Q K L+KY + + F+ W Sbjct: 651 ILGNINGFNFTSMDDYKFSLEDKIVIHKTNSLVEQIEKFLEKYNFLGCLKVINKFVLW-- 708 Query: 634 FCNTFIETIKQEDTALLPQLYTTAKT-------------VLSTAVVMLSTVTPFLAERIY 680 + + E IK DT LY AK + + + L+ P AE + Sbjct: 709 LSSWYFEIIK--DT-----LYCDAKNNPNRLAKQAVLNYIFTQLISFLNIFIPHTAEDAW 761 Query: 681 QQFHSG----SVMQASWPTAKAVKPPKLFADVVEAVSSLRH 717 + + SV + PT V K ++ + +S+++ Sbjct: 762 KNYSFNKKPISVNLFTKPTVFKVANSKNLGNIYKTFTSIKN 802 >ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycoplasma genitalium G-37] Length = 792 Score = 67.4 bits (163), Expect = 6e-013, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 55/242 (22%) Query: 380 ELIPKRFNKQVTRWLSQLKPWCISRQLIWGHPIPVWTHKQSGALHVGSTAPT-------- 431 ELI + K T + +L+ W SRQ WG P P+ ++ H+ P Sbjct: 388 ELISQNKAKLTTVY--KLRDWIFSRQRYWGEPFPI-IFDENNTPHLVEQLPVELPLLENY 444 Query: 432 ---------------------DKQNYTQSTDVLDTWFSSSLWPLICLDWHKNKHF----- 465 D +Y + T+ + W S + L L KN +F Sbjct: 445 KPDGSGNSPLMRNQAWVNIVKDNIHYQRETNTMPQWAGSCWYYLGYLMLIKNPNFWPIDS 504 Query: 466 ----------VPTDLLVTGYD-----ILF--FWVLRMTFNSYFQTKQLPFKQVLIHGLVR 508 +P DL V G + +L+ FW + F+ + + PF++++ G+V Sbjct: 505 KEAKKLFDQYLPVDLYVGGAEHAVLHLLYARFW-HKFLFDKKLVSTKEPFQKLINQGMVL 563 Query: 509 DAQNRKMSKSLNNGINPMDLIRDYGADATRLFLTSNHTPGDDLIFNEQKLKSAANFLNKL 568 +KMSKS N INP L+ +GADA RL+L L +N++ L +L+++ Sbjct: 564 GPDGKKMSKSKGNTINPTPLVDSHGADALRLYLMFMGPISASLTWNDEGLNGMRRWLDRV 623 Query: 569 WN 570 +N Sbjct: 624 YN 625 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508220|ref|NP_110169.1| GTP binding, era like [Mycoplasma pneumoniae M129] (193 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073003.1| conserved hypothetical GTP-binding protein [Myc... 300 7e-084 >ref|NP_073003.1| conserved hypothetical GTP-binding protein [Mycoplasma genitalium G-37] Length = 191 Score = 300 bits (768), Expect = 7e-084, Method: Compositional matrix adjust. Identities = 143/189 (75%), Positives = 168/189 (88%) Query: 1 MEARFLKSASDLESCPQDSVKEVCFMGRSNVGKSSLINAFFQKKLAKTSATPGRTQLLNF 60 M+A FLKSASDL+ CPQD++ E+CFMGRSNVGKSSLINAFF+KKLAKTSATPGRTQLLN+ Sbjct: 1 MDAHFLKSASDLKDCPQDNIPEICFMGRSNVGKSSLINAFFKKKLAKTSATPGRTQLLNY 60 Query: 61 FEYNRKRFVDLPGYGFAKLSKVQKEAITNLLTQFLNFRQNLTGVVLVIDSGVVTVQDQEV 120 FEY KRFVDLPGYGFAK++K +K+ ITNLLTQFLNFR NL GVVL++DSGVVTVQDQEV Sbjct: 61 FEYKDKRFVDLPGYGFAKINKNKKDFITNLLTQFLNFRSNLVGVVLIVDSGVVTVQDQEV 120 Query: 121 VKTILQTGLNFLVIANKFDKLNQSERFHTQNKLAHFLKVNPNKCLFVSAKTGYNLQVMHK 180 VK ILQTGLNFL++ANKFDKLNQSER+ + +A+FLKVN +KC+F S KT +NL ++HK Sbjct: 121 VKIILQTGLNFLIVANKFDKLNQSERYFSLKNIANFLKVNFDKCVFASTKTHHNLALVHK 180 Query: 181 QIFELFKAD 189 +IFELF D Sbjct: 181 KIFELFVED 189 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508221|ref|NP_110170.1| hypothetical protein MPN482 [Mycoplasma pneumoniae M129] (64 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073004.1| M. genitalium predicted coding region MG335.1 [... 124 2e-031 >ref|NP_073004.1| M. genitalium predicted coding region MG335.1 [Mycoplasma genitalium G-37] Length = 73 Score = 124 bits (310), Expect = 2e-031, Method: Compositional matrix adjust. Identities = 60/64 (93%), Positives = 64/64 (100%) Query: 1 MGIPLSLLVGVIIGYFISIKIFKKQIRDNPPITENQIKAMYAKMGRKLSETQVKEIMRSI 60 +GIPLSLLVG+I+GYFISIKIFKKQ+RDNPPITENQIKAMYAKMGRKLSETQVKEIMRSI Sbjct: 10 LGIPLSLLVGMILGYFISIKIFKKQMRDNPPITENQIKAMYAKMGRKLSETQVKEIMRSI 69 Query: 61 KNQK 64 KNQK Sbjct: 70 KNQK 73 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508222|ref|NP_110171.1| bifunctional threonine dehydrogenase; galactosyltransferase [Mycoplasma pneumoniae M129] (341 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073005.1| hypothetical protein MG335.2 [Mycoplasma genita... 395 e-112 >ref|NP_073005.1| hypothetical protein MG335.2 [Mycoplasma genitalium G-37] Length = 341 Score = 395 bits (1015), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/339 (56%), Positives = 263/339 (77%) Query: 1 MNKLISILVPCYQSQPFLDRFFKSLLKQDWNGVKVIFFNDNKPDPTYEILKQFQQAHPQL 60 M+KL+SILVPCY+S+PFL RFF SLLKQD N K+IFFNDN D TYE+L++F++ H L Sbjct: 1 MDKLVSILVPCYKSKPFLKRFFNSLLKQDLNQAKIIFFNDNVADETYEVLQKFKKEHNNL 60 Query: 61 AIEVHCGEKNVGVGGSRDQLINYVDTPYFYFVDPDDEFSDPNCFKAIVETIQGENFDIAV 120 AIEV+C ++N G+G RD+L+N V TPYFYF+DPDD F++ N K IVE+I+ E+FD+ V Sbjct: 61 AIEVYCDKQNEGIGKVRDKLVNLVTTPYFYFIDPDDCFNNKNVIKEIVESIKKEDFDLGV 120 Query: 121 LNSIVYLQMLKNDFLIKHIPLKNIFQGKVKLNPDNTVNHLHYIQNNDQYIWNIVINTAFF 180 L S+VYL LK+DF+IK +PLK IFQG+VKL +N VN L+YI+NNDQYIWNIVINT FF Sbjct: 121 LKSMVYLCFLKHDFIIKFLPLKGIFQGRVKLINNNNVNKLNYIKNNDQYIWNIVINTDFF 180 Query: 181 KALDLQFVNRFIEDIAVWFPIMFKAQKVLWIDVNGVNYYLRPNSASTQKNSIKLLSFIEA 240 + L+L F +R EDI +W+P+ F +QK+++IDV G NY++R +S ST ++ + L+ I+ Sbjct: 181 RKLNLTFESRLFEDIPIWYPMFFSSQKIVFIDVIGTNYFIRNDSLSTTISAPRYLNLIQC 240 Query: 241 YERLYFHLKKVGKLADFIDPNNKIESRFWRRQAFIWFSFINVSWMKAEFEQTKSVLQKLF 300 YE+LY +L + G LA FIDPN+KIE+RFWRRQ F+WF+ + + K F ++K +L+KLF Sbjct: 241 YEKLYVNLSQNGSLASFIDPNHKIEARFWRRQMFVWFALFSFEYFKKNFSESKKILEKLF 300 Query: 301 DFMEANGIYDRVFTNKHHGIYLLWVNRLKHFKKLVQAQP 339 F+E NG+Y+RVF K+ GIY +WV RLK+FK +++++ Sbjct: 301 VFLEKNGVYERVFQTKNQGIYYIWVQRLKYFKHVLESKS 339 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508223|ref|NP_110172.1| hypothetical protein MPN484 [Mycoplasma pneumoniae M129] (103 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508224|ref|NP_110173.1| species specific lipoprotein [Mycoplasma pneumoniae M129] (316 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] 113 2e-027 >ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1271 Score = 113 bits (283), Expect = 2e-027, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 31/185 (16%) Query: 134 PVYARGDDGTYALAIDGGDYFLAN---NKRDFTKQADILLYRYLQAKSNNFKENGVEFSL 190 PVY RGDD YA IDGG+YFL N NKR+F KQA++LL R+LQ ++NNF ++ V FS+ Sbjct: 484 PVYVRGDDAIYAFHIDGGNYFLENSSPNKRNFEKQAEVLLMRFLQGQTNNFSKDNVSFSV 543 Query: 191 NLLESGSLFQTWAQTGLTAKLYGALVAMMGSGQGTQVKGSVQGSSRAAXXXXXXXXXXXX 250 +L S S F++WA T KLY AL M+ +G Sbjct: 544 DLFGSNSEFRSWANRNTTLKLYTALTTMLENGTSNN------------------------ 579 Query: 251 XXXXXXESEVVXXXXXXXXXXXXXXXPFTDNPTFKKALTDIQSEYKDYLAAAGKLSEFKK 310 + +V F +L+ I+S Y+ Y+ AA KL+ F+ Sbjct: 580 ----NGQKDVCDLAKKLLKNNTNLSETIKKQQDFNNSLSQIKSSYESYIKAANKLNNFRT 635 Query: 311 DLGEV 315 DL + Sbjct: 636 DLANI 640 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508225|ref|NP_110174.1| hypothetical protein MPN486 [Mycoplasma pneumoniae M129] (147 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508226|ref|NP_110175.1| bifunctional; nifS-like; also related to tRNA splicing protein spl 1; molecular function: classV pyridoxal-phosphate-dependent transferase; subunit to MPN487 [Mycoplasma pneumoniae M129] (408 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073006.1| nitrogen fixation protein (nifS) [Mycoplasma ge... 496 e-142 >ref|NP_073006.1| nitrogen fixation protein (nifS) [Mycoplasma genitalium G-37] Length = 408 Score = 496 bits (1276), Expect = e-142, Method: Compositional matrix adjust. Identities = 245/407 (60%), Positives = 305/407 (74%) Query: 1 MTKTKFNPYQFRKQFKWFKNNPQWVNFDNAATSIALDTVSQACKEYYELFSVNPHNKTPD 60 M+ KFNP FRK FKWF+NN W+NFDNAATSIALD V++A KEYY+ F VNPHNK P+ Sbjct: 1 MSAIKFNPSSFRKNFKWFENNKNWINFDNAATSIALDVVAEASKEYYQYFCVNPHNKNPE 60 Query: 61 LNNQIIAIIAETRQLVADWFNVTALEIIFTSSATESINLFAHGLKPWIKPGDEIVLKGDE 120 +N ++IAII ETR L+A +FN EIIFTSSATES+NLFA GL +K DEI+LK DE Sbjct: 61 INQKLIAIIEETRDLLAKFFNAKKNEIIFTSSATESLNLFAFGLSSLVKSNDEIILKEDE 120 Query: 121 HSANVLPWVALAKQTKARLVWVEKQANQSLEDTFKSLINPKTKVVAITATSNLFGNSIDF 180 H+ANV PWV LAK+ KA+L ++K N+S D F P TK++ ITATSNLFGNSID+ Sbjct: 121 HAANVFPWVNLAKENKAKLKIIKKTPNKSWTDAFLKACTPSTKLLVITATSNLFGNSIDY 180 Query: 181 AQIADYLKQVNPKAFVAVDAVQTVQHKQIDIAKTQIDFLAFSTHKFYGPTGLGVAYIXXX 240 +I+ +LK+++P +F+ VDAVQ V H +IDI IDFL FSTHKFYGPTGLG+A+I Sbjct: 181 EKISKHLKKISPNSFIVVDAVQAVPHHKIDITSANIDFLTFSTHKFYGPTGLGIAFIKSE 240 Query: 241 XXXXXXXXXXGGDIFTQIDPDNTIHFKSTPLKFEAGTPNIMAIYALNKLLRFFKQKFNFA 300 GGDIF +D + I FK P KFEAGT NIMAIYALNK L+F +++FNF+ Sbjct: 241 LQSRLKPFKLGGDIFKSLDNNFKIIFKEGPSKFEAGTLNIMAIYALNKQLKFMQKEFNFS 300 Query: 301 QMMAYGHQLKQQAYELLNSNPQIVLANHDQDVPIFSFKHRQLATIDLATFLNINKIMVRQ 360 +M+ Y QLK AY+LL+ NP IVLANHDQDVPIF+FKH+ + + DLATFLNI KI+VRQ Sbjct: 301 EMVFYSKQLKNLAYQLLSQNPNIVLANHDQDVPIFAFKHKYINSADLATFLNIKKIIVRQ 360 Query: 361 GSICVGRYRNKDYFVRVSLMHYNTVKELQYLAKLLATDTKTIIKNVI 407 GSICVG+++NK+ F+RVSL+HYNT +EL YL KLL T +II +I Sbjct: 361 GSICVGKFKNKESFLRVSLLHYNTKEELLYLEKLLKTSKNSIINELI 407 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508227|ref|NP_110176.1| nifU-like, complementing transferase subunit for MPN488 [Mycoplasma pneumoniae M129] (140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073007.1| hypothetical protein MG337 [Mycoplasma genitali... 115 2e-028 >ref|NP_073007.1| hypothetical protein MG337 [Mycoplasma genitalium G-37] Length = 138 Score = 115 bits (287), Expect = 2e-028, Method: Compositional matrix adjust. Identities = 54/120 (45%), Positives = 81/120 (67%) Query: 1 MDRKIREQIIAIYSNLQHKQDLTQFAHCLTTKADDNCEDFFNLGLQFQNNQLTALGFNGE 60 MD + R +II IYSNL++K+ L F LTT DNCEDFFN+GL N++TA+GF+G+ Sbjct: 1 MDIRARTKIIDIYSNLKYKKPLKSFQKILTTSDSDNCEDFFNIGLNIDKNKITAIGFDGD 60 Query: 61 GCIISTIASELTLSALEGKTIKEAIVLLEQFMEAVQTGSLSTPLPQALQLLWDFQIDQKR 120 GCIISTIA+EL++ A+E KTI +A +L + + + + + + L+LL + + +KR Sbjct: 61 GCIISTIATELSIKAIENKTINQAKKILSDLIATYKDKNSANQVVEELKLLIEMNVTEKR 120 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508228|ref|NP_110177.1| species specific lipoprotein [Mycoplasma pneumoniae M129] (1300 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] 664 0.0 ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] 98 6e-022 ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] 75 3e-015 >ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1271 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/770 (48%), Positives = 486/770 (63%), Gaps = 73/770 (9%) Query: 516 PVYARGDDGTYALAIDGGDYFLAN---NKRDFTKQADILLYRYLQAKSNNFKENGVEFSL 572 PVY RGDD YA IDGG+YFL N NKR+F KQA++LL R+LQ ++NNF ++ V FS+ Sbjct: 484 PVYVRGDDAIYAFHIDGGNYFLENSSPNKRNFEKQAEVLLMRFLQGQTNNFSKDNVSFSV 543 Query: 573 NLLESGSLFQTWAQTGLTAKLYGALVAMMGSGQGTQVKGSVQGSSRAASVSVQTTQQNRQ 632 +L S S F++WA T KLY AL M+ +G G ++ + + N Sbjct: 544 DLFGSNSEFRSWANRNTTLKLYTALTTMLENGTSNN-----NGQKDVCDLAKKLLKNN-- 596 Query: 633 QSTDTQESEVVXXXXXXXXXXXXXXXPFTDNPTFKKALTDIQSEYKDYLAAAGKLSEFKK 692 T SE + F +L+ I+S Y+ Y+ AA KL+ F+ Sbjct: 597 ----TNLSETIKKQQD-----------------FNNSLSQIKSSYESYIKAANKLNNFRT 635 Query: 693 DLGEVSGLQQAIIDRADKYIQLEKQAQKSAIGLGQPLPYQRASDGSYPALEKFFIPEDSA 752 DL + L+QAI+DRA+ YI+L+K+A++S+IG GQPLPY+RA+DGSYP+L KFF Sbjct: 636 DLANIEKLEQAIVDRANNYIKLQKEAKESSIGWGQPLPYKRANDGSYPSLAKFF------ 689 Query: 753 ADGKVKASESGSAALVTLKTTDSQKSTNTVKQPDIKPTRENNDKKLKQLTSDVETKASSL 812 S+ SA +TLKTT + ++ D +PTRE N++ LK LT++VE KA L Sbjct: 690 ----NNNSDQSSAQTLTLKTTAAAITS------DNEPTREKNNQTLKTLTTEVENKAKEL 739 Query: 813 ITKWGATPQIGSQFSEIVSLKS-KDNKPQTNMILALLSDVGIKWTKILNSFKEWFFTNTN 871 + KW AT SQ+SEI++LKS + N ++IL+LL+D GI+ + N FK W+F NTN Sbjct: 740 VEKWKATTYSSSQYSEIITLKSSQLNDLDLDLILSLLTDSGIRTGTVANIFKNWYFKNTN 799 Query: 872 DFKNNYDSEKKELKGNEYKDFNDLVKQTLYLRSWQRLTSKEKFGYYKELGSVKAQXXXXX 931 F NN+D+ KELKG E+ DFNDLVKQ LY+RSWQ LTSKE+FGYYK+LGSV + Sbjct: 800 SFTNNFDTSNKELKG-EFSDFNDLVKQALYIRSWQNLTSKERFGYYKDLGSVNS------ 852 Query: 932 XXXXXXXXXXXXXXXXXGMQKSGDQTLLELGKKAFESELEASSSDGQYKYLRFLSTLMWL 991 S +QTLL+L KKAFE ELE + D +YKY+RFL LMWL Sbjct: 853 ---TSTMLQMQNKAAQSHTSSSVNQTLLDLAKKAFEKELEDPNQDAEYKYMRFLQALMWL 909 Query: 992 VKDGAKNYKRLLQQAITVGTRAFVSWTVSYDDXXXXXXXXXXXXXXXXXXXXXXNTQSDN 1051 VK+GA+NYK LLQQAI +GTRAFVSWTV YD ++N Sbjct: 910 VKNGAQNYKNLLQQAIPIGTRAFVSWTVGYDKNPSATVSQKTKSSTSSA--------NEN 961 Query: 1052 PFNKFVQNPDYVQGSETNWFNDKSTPIKPDSLLESESTYNFTAEPFDDKTKSQKRSTGGT 1111 PFN+F+QNP+Y QGSE NWFNDK TPI+PDSLLESE+TY FT EPF++ +S G + Sbjct: 962 PFNRFLQNPNYTQGSEINWFNDKQTPIQPDSLLESENTYRFTDEPFNNSVALSNKSQG-S 1020 Query: 1112 TNEKHFFGFNGLTINSPQSVSTASAGLTEQIFNNFGQLVTSSDKSGALSQYKDKATLKRL 1171 +++K+F+GFNGLTINS QS+STASAGLT+Q+FNN+GQL+T++DK+GALSQYKDK TL L Sbjct: 1021 SDKKYFYGFNGLTINSNQSISTASAGLTQQLFNNYGQLITATDKAGALSQYKDKFTLWSL 1080 Query: 1172 IQNTNSDAELNAFGEVLHRAVNVDTSNLGRFNSSGEPLISFDNXXXXXXXXXXXXXXXYF 1231 I T+SDAELNAFGE+LHR+VNVDT+NL RFNS GEPLISFDN YF Sbjct: 1081 INKTSSDAELNAFGELLHRSVNVDTNNLSRFNSRGEPLISFDNKKKFLLNVVDRLDDLYF 1140 Query: 1232 NKFEGYVGQTKVKMXXXXXXXQGTKTIRKPKPHHSPRTRVSRLWAMSFRL 1281 +KFEGYVG +K +G KT++ P T S + +S+ + Sbjct: 1141 HKFEGYVGLSKA-ANTDGSNTEGYKTVQTV-----PLTNDSSIQTLSYVI 1184 Score = 401 bits (1031), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/427 (48%), Positives = 287/427 (67%), Gaps = 20/427 (4%) Query: 1 MGYKLKRWPLVAFTFTGIGLGVVLAACSALNTSNLFPRQNRSKQLIGFTENNIIKPEAVL 60 M ++ KRW L+A F+G+G ++ ACS +NT+NLFP NRS++LIGF++ NII P+ VL Sbjct: 1 MAHRFKRWSLIALAFSGVGATAIITACSTINTANLFPTLNRSQKLIGFSDQNIINPDVVL 60 Query: 61 KAALAEDNGTETILRVNFGEALKSWYQNNKDRNIATRLTIFSENVEDEHDNLLDQKQQAE 120 K+AL + +G ++ILRV+FG AL+ WYQ N DRNI+ RL IF ENVEDEHDNL+D+K++A+ Sbjct: 61 KSALNDGSGVDSILRVSFGSALQKWYQANADRNISNRLKIFEENVEDEHDNLIDEKKRAD 120 Query: 121 PINWPIELQKEYDQWGGSESSWKALKLYDRLIADFQSLIFSNIVANVQLTDGSDQFKPTT 180 + WPIE+QKEYDQ+GG++ SWK LKLYDRLI DFQSLIF+NI ANV L + SD TT Sbjct: 121 RVKWPIEVQKEYDQFGGNQESWKKLKLYDRLITDFQSLIFNNISANVSLVNSSDTSVATT 180 Query: 181 KDNLDSTSNKIKFVNSKPNDPNGEFFANLQAYLFAQWVVEENPLPLTQAFFAYQAPKDGL 240 K+N++ T NK+KF+NS ND NG+FF NLQAYLF+QW++EENP L QA F YQ+P GL Sbjct: 181 KENIEKTENKLKFINSNLNDVNGDFFTNLQAYLFSQWLIEENPFLLNQASFNYQSPIAGL 240 Query: 241 DSLYDQAAIG-SALQLGYAFPAFREPNNGQSQGKTTFDPTPNSAQNFGDFIKAV-FPEQK 298 S+YD+ AIG S L L Y FPAF++P +S G+T NSA+ F +F K + Sbjct: 241 GSIYDENAIGASNLNLSYNFPAFQDP--SESGGQT------NSAKLFEEFDKQLQTANSS 292 Query: 299 NGQTQQSNTSSRTGLFDWQTKWNTNGAANKLLVTKSNLRGAFKGVGLATAIIDQYEYLVG 358 + T++R L D++ K+ +A+K+L++K+N+ K V L+ A+IDQY YL+ Sbjct: 293 GSSQSSAATNTRNDLLDFENKY----SASKVLISKNNILSVLKTVNLSAAVIDQYHYLLN 348 Query: 359 G----SKTSSLPEVKVDSNKSNQNPLDSFFMEGK-DAVAIRSIVSRAKIAMTDQTPGFKV 413 + T++ SN NPLD F V ++S +++++ +D GF V Sbjct: 349 NKTELTTTTTTTTTTTGGTSSNLNPLDKFIKSSSATTVMMKSAMTKSQEVTSDNN-GFNV 407 Query: 414 NPAFVKV 420 F+K+ Sbjct: 408 KSEFLKI 414 >ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1177 Score = 97.8 bits (242), Expect = 6e-022, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 27/281 (9%) Query: 1 MGYKLKRWPLVAFTFTGIGLGVVLAACSALNTSNLFPRQNRSKQLIGFTENNIIKPE--- 57 M LK+ F G+ + +L ACS P + + + T N + Sbjct: 1 MKKLLKKSKFWWFLLCGLSVSTILVACST-------PTNSALQTVFSPTSTNFFHGQKGS 53 Query: 58 --AVLKAALAEDNGTETILRVNFGEALKSWYQNNKDRNIATRLTIFSENVEDEHDNLLDQ 115 L AL + + + +AL++WY+NN+D+ I L +NV+D++ N ++ Sbjct: 54 LKEGLITALKTPSANKHFVIGPLLKALEAWYENNEDKAINKFLKDTKKNVDDQYKNTVN- 112 Query: 116 KQQAEPINWPIELQKEY-DQWGGSESSWKALKLYDRLIADFQSLIFSN----IVANVQLT 170 + P N + +Q++ D+ GGSE+SWK+ +L+++LI+DF + +F+ N QL+ Sbjct: 113 GLISPPRNRAVFIQQDLLDKSGGSEASWKSQQLFNQLISDFTAKLFAKDFLVYKPNGQLS 172 Query: 171 DGSDQFKPTTKDNLDSTSNKIKFVNSKP--NDPNGEFFANLQAYLFAQWVVEENPLPLTQ 228 G P D L F +P ++ N FA LQA +F WV +P ++Q Sbjct: 173 TG-----PYIYDELSQPEKWKDFGFQEPRFSETNDALFAKLQAQIFNLWVEYTDPTLISQ 227 Query: 229 AFFAYQAPKDGLDSLYDQAAIGSALQLGYAFPAFREPNNGQ 269 A F Y AP+ GL +Y+ + L YAFP F P +G+ Sbjct: 228 ATFKYAAPQQGLGQVYNTEKLKDKLTPSYAFPFF--PKDGE 266 >ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 1225 Score = 75.5 bits (184), Expect = 3e-015, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 13/268 (4%) Query: 7 RWPLVAFTFTGIGLGVVLAACSALNTSNLFPRQNRSKQLIGFTENNIIKPEAVLKAALAE 66 +WPL+ + + LG+V AC+ N+ + +N + FT+ N A L AL Sbjct: 9 KWPLL-LSSIAVSLGIVAVACAQPNSRTI---ENLFRPSSAFTDKNDGSINATLYKALEN 64 Query: 67 DNGTETILRVNFGEALKSWYQNNKDRNIATRLTIFSENVEDEHDNLLDQKQQAEPINWPI 126 G L + L+++Y+ N D +I L F+ + ++ N + ++ + Sbjct: 65 REGLTQYLTMRLAPVLRNFYEENVDDDIKRNLRTFNTDTDNSFVNQEQNLRNQYRGDYLV 124 Query: 127 ELQKE-YDQWGGSESSWKALKLYDRLIADFQSLIFS-NIVANVQLTDG--SDQFKPTTKD 182 LQ + D GG++++WK + ++++ DF + +F+ N V V + G S K ++ Sbjct: 125 RLQTDILDNTGGNQANWKLRDVNNKIVDDFINKLFTKNFVEYVDKSVGVLSTPLKGLIEN 184 Query: 183 NLDSTSNKI--KFV--NSKPNDPNGEFFANLQAYLFAQWVVEENPLPLTQAFFAYQAPKD 238 + + KI KFV N + N +A +Q L Q+V ENP +++ F + P D Sbjct: 185 QSNWNNIKIQAKFVDKNKRLRINNDAVYAAIQDKLLDQFVTNENPNLVSRVVFTNETPND 244 Query: 239 GLDSLYDQAAIGSALQLGYAFPAFREPN 266 G D+ ++ I S Y F F + N Sbjct: 245 GFDNYFNPDLIKSPTP-SYQFQVFNKYN 271 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508229|ref|NP_110178.1| recombination protein RecA [Mycoplasma pneumoniae M129] (336 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073009.1| recA protein (recA) [Mycoplasma genitalium G-37] 551 e-159 >ref|NP_073009.1| recA protein (recA) [Mycoplasma genitalium G-37] Length = 340 Score = 551 bits (1421), Expect = e-159, Method: Compositional matrix adjust. Identities = 259/329 (78%), Positives = 307/329 (93%), Gaps = 1/329 (0%) Query: 1 MVQKEMINKKISQDNS-FIQNNNLADFDFLDAKKNSEIKTVSTGSLHLDEALGTGGLPLG 59 M QKE+INKK +Q NS FI++NNL FDF DAKKNSEI+T+STGSL+LDEALG+GGLPLG Sbjct: 1 MAQKEIINKKNTQKNSSFIESNNLTSFDFFDAKKNSEIETISTGSLNLDEALGSGGLPLG 60 Query: 60 RIVELYGNESSGKTTVALHAVASFQKAGKVACYIDAEGALDLSYAKAIGIDLGKLLVAHP 119 RIVELYGNESSGKTT+AL+AVASFQKAGK ACYIDAEGALDL+YAK+IGIDL KLL+AHP Sbjct: 61 RIVELYGNESSGKTTIALNAVASFQKAGKTACYIDAEGALDLAYAKSIGIDLNKLLIAHP 120 Query: 120 KHGENAFALMESLIKTNKVALIVVDSVAALIPKQELEGNMDDQTIGLHARMMSKGLRRVQ 179 +HGENAFAL+ESLIKTNK++LIV+DSVAALIPKQELEG +++QTIGLHARMMSKGLRR+Q Sbjct: 121 RHGENAFALIESLIKTNKISLIVIDSVAALIPKQELEGTIEEQTIGLHARMMSKGLRRIQ 180 Query: 180 SLLPESDTCLLFINQLREKPGVMFGNGEVTTGGRALKFYASMRMEAKRSELLKDRFGNYV 239 S+LP+S TC+LFINQLREKPGVMFGN EVTTGG+AL+FY+S+RMEAKR ELLKD+F NYV Sbjct: 181 SILPDSKTCVLFINQLREKPGVMFGNNEVTTGGKALRFYSSLRMEAKRVELLKDKFNNYV 240 Query: 240 GIKSKLTVSKNKVARPFGVAFLEIMFNRGIVYEHEVIELALKHNVVVRSDNAYSFKSQNI 299 GIK+K+ VSKNK+A+PFGVA LEIMFNRG V+EHEVI+LALK NVVVR+ N+YSF +++I Sbjct: 241 GIKTKVMVSKNKIAKPFGVAILEIMFNRGFVHEHEVIDLALKFNVVVRAGNSYSFNNESI 300 Query: 300 AIGKEKLFSVLAEKPELFEQIKQLTIKQI 328 A+GKEKL +VL+EKP LFEQIK+LT++Q+ Sbjct: 301 AVGKEKLLNVLSEKPALFEQIKELTVQQL 329 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508230|ref|NP_110179.1| membrane nuclease [Mycoplasma pneumoniae M129] (474 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508231|ref|NP_110180.1| similar to D-ARABINO-6-HEXULOSE 3-PHOSPHATE isomerase from E.coli [Mycoplasma pneumoniae M129] (305 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508232|ref|NP_110181.1| 3-hexulose-6- phosphate synthase [Mycoplasma pneumoniae M129] (218 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508233|ref|NP_110182.1| similar to phosphotransferase protein II, component A, for pentitol, SGAT homolog [Mycoplasma pneumoniae M129] (159 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508234|ref|NP_110183.1| similar to PTS system: EIIB [Mycoplasma pneumoniae M129] (95 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508235|ref|NP_110184.1| similar to phosphotransferase protein for pentitol from E.coli, SGAT homolog [Mycoplasma pneumoniae M129] (660 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508236|ref|NP_110185.1| similar to PHOSPHOTRIESTERASE HOMOLOGY PROTEIN [Mycoplasma pneumoniae M129] (143 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508237|ref|NP_110186.1| L-ribulose-5-phosphate 4-epimerase [Mycoplasma pneumoniae M129] (242 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508238|ref|NP_110187.1| hypothetical protein MPN499 [Mycoplasma pneumoniae M129] (163 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508239|ref|NP_110188.1| hypothetical protein MPN500 [Mycoplasma pneumoniae M129] (527 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 188 1e-049 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 188 bits (477), Expect = 1e-049, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 171/340 (50%), Gaps = 53/340 (15%) Query: 28 LPTFSNVGVGLKANVXXXXXXXXXXXXXNNIPKWATLDQANLQLWTGAGWRNDKTTSGST 87 LPTFSN+ VG+K+ + +W + + +WTGAG+R S Sbjct: 793 LPTFSNINVGVKSMITQHLNKENT--------RWVFIPNFSPDIWTGAGYR-----VQSA 839 Query: 88 GNANDTKFXXXXXXXXXXXXXXXXXXXXXXPDGLQADKVDQNGQVKTSVQEATSGDNLTN 147 N F P G G K + A Sbjct: 840 NQKNGIPFEQVKPSNNSTPFDPNSDDNKVTPSG---------GSSKPTTYPAL------- 883 Query: 148 YTNLPPANLTPTADWPNALSFTNKNNAQRAQLFLRGLLGSIPVLVNKSGQDDNSKFKAED 207 P +++PT+DW NAL+FTNKNN QR QL LR LLG+IPVL+NKSG ++ K + Sbjct: 884 -----PNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLINKSGDSNDQFNKDSE 938 Query: 208 QKWSYTDLQSDQTKLNLPAYGEVNGLLNPALVETYFXXXXXXXXXXXXXXXXXXXFKIPE 267 QKW T+ NLP +GEVNGL N AL+ TY KI Sbjct: 939 QKWDKTETNEG----NLPGFGEVNGLYNAALLHTYGFFGTNTNSTDP---------KIGF 985 Query: 268 QSGTNTTSKAVLITPGLAWTPQDVGN-IVVSGTSFSFQLGGWLVTFTDFIKPRAGYLGLQ 326 ++ ++++S + L+ GL WT QDVGN +V++ TSF FQLGGW +TFTDFI+PR GYLG+ Sbjct: 986 KADSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYLGIT 1045 Query: 327 LTGLDVSEATQRELIWAKRPWAAFRGSWVNRLGRVESVWD 366 L+ L + +IWA +PW +F+GS+++ G +S+WD Sbjct: 1046 LSSLQ-----DQTIIWADQPWTSFKGSYLDSDGTPKSLWD 1080 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508240|ref|NP_110189.1| hypothetical protein MPN501 [Mycoplasma pneumoniae M129] (196 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508241|ref|NP_110190.1| hypothetical protein MPN502 [Mycoplasma pneumoniae M129] (422 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] 258 7e-071 >ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length = 1444 Score = 258 bits (659), Expect = 7e-071, Method: Compositional matrix adjust. Identities = 152/381 (39%), Positives = 202/381 (53%), Gaps = 47/381 (12%) Query: 40 YDLAGRALYDLDFSKL-NPQTPTRDQTGQITFNPFGGFGLSGAAPQQWNEVKDKVPVEVA 98 YD GRALYD++ +K+ NP T R G+ F+PF GFGL+G AP WNE+K KVPVEV Sbjct: 133 YDNNGRALYDINLAKMENPSTVQRGLNGEPIFDPFKGFGLTGNAPTDWNEIKGKVPVEVV 192 Query: 99 QDPSNPYRFAVLLVPRSVVYYEQLQRGLALPNXXXXXXXXXXNTTIGAYGLKVKNAEADT 158 Q P +P + VLLVP+ + Y L + + N T L+ + D+ Sbjct: 193 QSPHSPNLYFVLLVPKVALEYHNLNNQVVKESLEVKATQSSFNPT---QRLQKDSPVKDS 249 Query: 159 AKSNEKLQGYEXXXXXXXXXXXXXXXXXXXNENXXXXXXXXXXXXSGSQGNSGDQGTEQV 218 +K EKL GSQ +S Sbjct: 250 SKQGEKLS------------ETTASSMSSGMATSTRAKALKVEVERGSQSDS-------- 289 Query: 219 ELESNDLANAPIKRGSNNNQQVQLKAD-DFGTAPSSSGSGTQDGXXXXXXXXXXXEQIHN 277 L ND A P+K N++ +V+L+A+ +F A +QI Sbjct: 290 -LLKNDFAKKPLKH-KNSSGEVKLEAEKEFTEA---------------WKPLLTTDQIAR 332 Query: 278 DPAKFAASILILYDAPYARNRTAIDRVDHLDPKVMTANYPPSWRTPKWNHHGLWDWKARD 337 + A+++ YDAPY+ N TA VDH+DPK M NYPPSW+TPKWNHHG+WD+ AR+ Sbjct: 333 EKG-MGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKTPKWNHHGIWDYNARN 391 Query: 338 VLLQTTGFFNPRRHPEWFDGGQTVADNEKTGFDVDNSENTKQGFQKEADSDKSAPIALPF 397 +LLQTTGFFNPRRHPEWFD GQ ADN GF V ++++ K GF+K + S+PIALPF Sbjct: 392 LLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTDHKKDGFKKNS----SSPIALPF 447 Query: 398 EAYFANIGNLTWFEQALLVFG 418 EAYFANIGN+ ++ +FG Sbjct: 448 EAYFANIGNMVAIGNSVFIFG 468 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508242|ref|NP_110191.1| protein family involved in cytadherence [Mycoplasma pneumoniae M129] (381 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] 248 1e-067 >ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length = 1052 Score = 248 bits (632), Expect = 1e-067, Method: Compositional matrix adjust. Identities = 149/363 (41%), Positives = 192/363 (52%), Gaps = 84/363 (23%) Query: 3 GVAQDKVH-GLEQTTQWNQQASQKNLTNNPAPKAVTGFKLDKGRAYRKLNEAWPVYEPLX 61 G Q +VH G Q QW Q +Q +L NNP+P A TGFKL G AYRKL+E+WP+YEP+ Sbjct: 168 GKTQREVHLGSGQANQWTSQRNQHDLNNNPSPNASTGFKLTTGNAYRKLSESWPIYEPID 227 Query: 62 XXXXXXXXXXXXXXXXXASEPKGDAPLVSSTESQMAAVTDSQQSGHNSGLVSLAQRSTTV 121 +E K DAP VS S Sbjct: 228 GTKQGKGKDSSGWSSTEENEAKNDAPSVSGGGSSSGT----------------------- 264 Query: 122 AVQKXXXXXXXXXXXXXNKFQKYLNTAQALHQMGVIVPSLETWPGKPSTGIATRAGGGVS 181 F KYLNT QAL +G++ Sbjct: 265 -------------------FNKYLNTKQALESIGILF----------------------- 282 Query: 182 VQAATRQSSSTNEDLP-NVITQLYHTSTSQLAYLNGQIVVMGSNAVPSLWYWVVD---ER 237 ++ P NVITQLY+ STS+LA N IVVMG++ +PS+WYWVV+ + Sbjct: 283 -----------DDQTPRNVITQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQE 331 Query: 238 TTSGRATWWAHTELNWGTDKQKQFVENQLGFKDDSNSSLTNFKSQGLTQPAYLIAGLDVV 297 S + TW+A+T L+WG DKQKQFVENQLG+K+ ++++ NF S+ TQPAYLI+G+D V Sbjct: 332 NASNKPTWFANTNLDWGEDKQKQFVENQLGYKETTSTNSHNFHSKSFTQPAYLISGIDSV 391 Query: 298 QDHLVFAAFKAGAVGYD---MTTDSNASTKDQALAWSTTAGLDSAGGYNKLVENTGGLNG 354 D ++F+ FKAG+VGYD ++ S++STKDQALAWSTT LDS GY LV N GLNG Sbjct: 392 NDQIIFSGFKAGSVGYDSSSSSSSSSSSTKDQALAWSTTTSLDSKTGYKDLVTNDTGLNG 451 Query: 355 PIN 357 PIN Sbjct: 452 PIN 454 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508243|ref|NP_110192.1| hypothetical protein MPN504 [Mycoplasma pneumoniae M129] (126 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508244|ref|NP_110193.1| hypothetical protein MPN505 [Mycoplasma pneumoniae M129] (253 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508245|ref|NP_110194.1| hypothetical protein MPN506 [Mycoplasma pneumoniae M129] (793 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] 702 0.0 ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] 489 e-140 >ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 765 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/827 (48%), Positives = 517/827 (62%), Gaps = 102/827 (12%) Query: 1 MKFK-YGAIFFSGFLGLSAILAACGTKGKFDQVDDGKIXXXXXXXXXXXXXXXQAIVKKY 59 MK K + A+ S F G S +L AC +FDQVDDGKI + +VKKY Sbjct: 1 MKLKGFLAVGVSVF-GFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKY 59 Query: 60 NEVKKPGDYPIEITQIAGGYDGGRSDLQTRVNVKDTTNFYNLILNYPDLVSTLGRVGMEL 119 N+ K PGDYPIEI QIAGGYDGG+ D+QT+V+ KD NFYNLILNYP++VSTL R M L Sbjct: 60 NDTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMAL 119 Query: 120 PFDNVKVDKLSPRFLDFNNRISAISKPGIYGIPVSLSTEVLSINGPVLHYILNNAKKKEG 179 FD V VDKL P FL FN+RI I GIY IP+S+ST+++ INGPVLHYILN+A +KEG Sbjct: 120 NFDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSA-RKEG 178 Query: 180 TLNQ---KMTSSSEGKNSSGTLTVATDTETSSLWKKIEDSAKAXXXXXXXXXXXXXXXXX 236 T + T SS GTL +A D+ET+ LW+ I+ +A+ Sbjct: 179 TPTSTTVQATVSSRSAEKKGTLEIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSS 238 Query: 237 ATFSLVQLKQTQEKTDDSQDTKNSDDQVKKSWGEYQEVDGVLKNFEFKASIFENWHDLLD 296 ++ + +T +DT SD+++K+ WGEYQEVDG LKNF FKASIFENW++ LD Sbjct: 239 SSSTTSTTGET-------KDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLD 291 Query: 297 FSTRVAKSF-KKIHENSNKKGNDIQGILGVDSTPNSLFTSVFAAGGGDYNNFFYKIE--N 353 F+TR+A SF +K+ +NK G D+QG+LGVDS+ N+L+ +VFAAG +Y+NFF+ I+ Sbjct: 292 FATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRT 351 Query: 354 GRADFSNFKNKGTSYQNLQKVFGDFKGLIDKNGIFVNKGGSYSSNFQKFHQLAYSISSTS 413 G AD+SNF NK +SYQNL+ V+ DF LI NG+FVN+GGSYSSNF+KFHQLA+S+SS+ Sbjct: 352 GYADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSG 411 Query: 414 GFFYSFAGKSAKRLNFGDSFIEYPRFTQEIKAPSKNGENGQTNEGNSTNGEQNLLGTFEV 473 G+ Y FA +AKRL F + IEYP FTQ I+AP NS+ E NLLGTF++ Sbjct: 412 GYSYYFAKDNAKRLKFSNYAIEYPSFTQTIQAP------------NSSETESNLLGTFKL 459 Query: 474 KDDSKPKEEVKSNKNXXXXXXXXXXXXXXXXXTIYLYETKIPDGKTAGDNAILIKDKNVI 533 + I LY+ IP GK G +AILI + N+I Sbjct: 460 SEKD-----------------------------INLYKGSIPSGKQQGVDAILISNPNLI 490 Query: 534 EKLKSAAKEENKEQTAEATKAAITSNKAKSTKKESSKVIGYTTTDSVREDGKNIFAIDRV 593 L+ AK++N Q +E+T ++K+IGYTTT +V D +NIF++ ++ Sbjct: 491 NILEQ-AKQKNTAQGSEST---------------TNKIIGYTTTANVNVDNQNIFSVSKL 534 Query: 594 NGENYDRKIIVGAKAETLNQSSTLQSEEAIVLPAPGKYLNGDPKKVTITQGPNIIGIHAN 653 N E + RKIIV A ETL+QS TLQS E+IVLP PGKY + D KV ITQGPN+IGIHAN Sbjct: 535 NNEQFQRKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIGIHAN 594 Query: 654 EKENAETQKFVDWFLNSPQT-WEKQSRDKKGSSEKQTAAEFFAESASYILPLKEIFDKND 712 EKEN ET+KFV+WFLN T W ++ K +TAAE+F + ASYILPLKE F+K+ Sbjct: 595 EKENIETKKFVNWFLNQSITDWNSNNQQKNSDQTTKTAAEYFTDQASYILPLKEKFNKSS 654 Query: 713 TKTEKGKNS----------------------------KTQQRTNTYAEKALELFKQISQN 744 KG +S KT +NT+ KALELF+Q + N Sbjct: 655 DLELKGSSSSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNTFTAKALELFQQAANN 714 Query: 745 QIVSYSDPSDFRSGKFRDAIGATFNAAVSSKADFNKFVQNFTATLGS 791 +I+ +SDPSDFR+G FR+ I ++FNAAV+SK FN+FVQNF +LGS Sbjct: 715 EIIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLGS 761 >ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 701 Score = 489 bits (1259), Expect = e-140, Method: Compositional matrix adjust. Identities = 306/806 (37%), Positives = 443/806 (54%), Gaps = 121/806 (15%) Query: 1 MKFKYGAIFF--SGFLGLSAILA-ACGTKGKFDQVDDGKIXXXXXXXXXXXXXXXQAIVK 57 MKFK +FF S LG A+ AC +FDQVDDGKI I+ Sbjct: 1 MKFK---LFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLATVTSASASGSLT-TIIS 56 Query: 58 KYNEVKKPGDYPIEITQI--AGGYDGGRSDLQTRVNVKDTTNFYNLILNYPDLVSTLGRV 115 KYN K P DYP+E+ + G Y G+ DLQ ++ KD NFYNL NY D+VS L R Sbjct: 57 KYNSQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRS 116 Query: 116 GMELPFDNVKVDKLSPRFLDFNNRISAISKPGIYGIPVSLSTEVLSINGPVLHYILNNAK 175 MEL FD V P FL FNN IS ++ IY +P ++S EVL +NGPVLHYIL++AK Sbjct: 117 QMELSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAK 176 Query: 176 KKEGTLNQKMTSSSEGKNSS-GTLTVATDTETSSLWKKIEDSAKAXXXXXXXXXXXXXXX 234 K T +++ S NS+ GT+ VA+D+ETSSLW K+E +AK Sbjct: 177 KDSNT---TLSTHSASNNSNKGTMVVASDSETSSLWTKLEAAAKMN-------------- 219 Query: 235 XXATFSLVQLKQTQ---EKTDDSQDTKNSDDQVKKSWGEYQEVDGVLKNFEFKASIFENW 291 Q +TQ + +S T+ SD ++KK WG+YQEVDG LKN+ FKAS+F NW Sbjct: 220 -------AQTNETQVLKSNSSESNQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNW 272 Query: 292 HDLLDFSTRVAKSFKKIHENSNKKGNDIQGILGVDSTPNSLFTSVFAAGGGDYNNFFYKI 351 DL DF+TR+AKSF K+ + + KKG ++Q + G+ S N+L+T++FA+G DYNNF + I Sbjct: 273 KDLNDFATRIAKSFTKL-QTTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNI 331 Query: 352 ENGRADFSNFKNK-GTSYQNLQKVFGDFKGLIDKNGIFVNKGGSYSSN-FQKFHQLAYSI 409 +N R +FSNF NK T++QNL+ +F FK LID+NG+ N + N + KF+QLA+ Sbjct: 332 KNQRINFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYT 391 Query: 410 SSTSGFFYSFAGKSAKRLNFGDSFIEYPRFTQEIKAPSKNGENG-QTNEGNSTNGEQNLL 468 SST+ F YSFA S KRL D IE +KN ++ + N + ++ NL+ Sbjct: 392 SSTARFPYSFASDSVKRLIVNDKTIE-----------NKNNKSVFEVNLSSDSDNNSNLI 440 Query: 469 GTFEVKDDSKPKEEVKSNKNXXXXXXXXXXXXXXXXXTIYLYETKIPDGKTAGDNAILIK 528 GT +++ + + LYE ++ K G +A+LIK Sbjct: 441 GTVSLENSKQ----------------------------VSLYEKQVDSNKQIGVDALLIK 472 Query: 529 DKNVIEKLKSAAKEENKEQTAEATKAAITSNKAKSTKKESSKVIGYTTTDSVREDGKNIF 588 D+ +I LKS + + + +E ++ K++ + +TT V D K IF Sbjct: 473 DETLINHLKSLKSQVSAKSASETSQT-----------KQNKTFLAFTT---VNADQKAIF 518 Query: 589 AIDRVNGENYDRKIIVGAKAETLNQSSTLQSEEAIVLPAPGKYLNGDPKKVTITQGPNII 648 + ++NG+ KII+ A T + STLQ +EAIVL AP ++ + DP + + QGP++I Sbjct: 519 DVGKLNGKT--AKIIINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLI 576 Query: 649 GIHANEKENAETQKFVDWFLNSPQTWEKQSRDKKGSSEKQTAAEFFAESASYILPLKEIF 708 GIHANE+E+ ET+KFV+W+LN+ WE+ S +T AE+ A+ ASY+LP K Sbjct: 577 GIHANEREDIETKKFVNWYLNTKVQWEENSI--------KTPAEYVADKASYLLPFKNRL 628 Query: 709 DKNDTKTEKGKNSKTQQRTNTYAEKALELFKQISQNQIVSYSDPSDFRSGKFRDAIGATF 768 + TN+Y E Q + + +++P+DF S K RD + + Sbjct: 629 N----------------NTNSYNEFVKTAVSQFADKNVTKFAEPADFLSNKVRDGVKSNL 672 Query: 769 NAAVSSKA-DFNKFVQNFTATLGSDI 793 NAA+++ + DF+ F+ + T LGSD+ Sbjct: 673 NAAINNHSIDFDSFINDLTDYLGSDV 698 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508246|ref|NP_110195.1| type I restriction enzyme ecokI specificity protein (hsdS) homolog [Mycoplasma pneumoniae M129] (363 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508247|ref|NP_110196.1| membrane export protein family [Mycoplasma pneumoniae M129] (509 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 489 e-140 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 462 e-132 ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 106 5e-025 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 489 bits (1259), Expect = e-140, Method: Compositional matrix adjust. Identities = 250/489 (51%), Positives = 337/489 (68%), Gaps = 6/489 (1%) Query: 23 IPKVSQKLFGLLGDGFFPQLHPKGLKIADNIAALFDQYNLKSIALKNFDLNLERKNDIVI 82 +PKV Q F L + FFPQLHPKGL I ++I +F+QYNLK I LK+F+L L +KNDIVI Sbjct: 1 MPKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVI 60 Query: 83 QGKVCYSFSIKMDFATIYEGDGSTIDLQFALNASTTNFANLTDLQDSFWQSGKDLNTQLF 142 + K+ YSF IKMDF YEG +T++LQF L A T+NF NL +LQ+SF +G DLNTQLF Sbjct: 61 KDKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSF--NGNDLNTQLF 118 Query: 143 WKPSVHKLISNGTNDLTTLAQTALGDSLFDTKVNLTESVIEINNQTDVA-TKFREKVLNS 201 WKP ++KL+ NDLT++A+TA+ DSLF + N+ SV++I+ Q D+A TKF ++++ Sbjct: 119 WKPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEP 178 Query: 202 FKQEREKAHAEHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNKSLTAASEFKQY 261 FK+EREKA A++ FNKS A EFK Y Sbjct: 179 FKKEREKAKADYEEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKDY 238 Query: 262 WSKKNKDVTDKKQLAEALKISLEADRNRTFSFLIAGFRTAI-DWYYNAKKENNDAKQKAF 320 W + KDVTDK QL +ALK S AD+N+TFS LI F A D+Y N KK+ ++ +KAF Sbjct: 239 WKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKAF 298 Query: 321 GSQGIQFPKDGLNGIYMPDWLRGELTSKSNINLKIKELKVQNKIESPTINWIDGVGIKQD 380 +GIQFP+ GL G+YM DWLRG+LTS ++I L + +K++NK +PTI+W + GI+ Sbjct: 299 SEKGIQFPRQGLEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENNPTIDWKNN-GIEFR 357 Query: 381 KANPFNYRFEVDIKYTGGYQLYGFYAFAALFTKFPSSWSGEMNLKFIVDGSIPVYTVAKK 440 + P+ ++FE+DIKY GGY+L G +++ A F+ PSSW+GEM++KFIVDG + V Sbjct: 358 QHYPYKFKFEIDIKYQGGYKLTGLFSWFAPFSGIPSSWNGEMDVKFIVDGDLDYNLVQNT 417 Query: 441 DYPGSLFQFNDKDELLFTLYVKEQISVADPNFMNLLRGQNLHDLELVTGATKPPVVDLAS 500 DYPGSLFQF D ++LLFTL+VKEQI V D FM+LL+ QNLH+L+L GATKPPVVDLAS Sbjct: 418 DYPGSLFQFKD-NQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNGATKPPVVDLAS 476 Query: 501 YLHFVLLSA 509 YLH+++L++ Sbjct: 477 YLHYLVLNS 485 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 462 bits (1190), Expect = e-132, Method: Compositional matrix adjust. Identities = 253/526 (48%), Positives = 336/526 (63%), Gaps = 20/526 (3%) Query: 1 MNQLQAEINAANAVFPVSDS-TKIPKVSQKLFGLLGDGFFPQLHPKGLKIADNIAALFDQ 59 MNQLQ ++ AANA+FPV D+ K+PKV +LF L+ D FP+L+PKGL I+DNIAALF++ Sbjct: 124 MNQLQKQVEAANAIFPVDDAFVKLPKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFER 183 Query: 60 YNLKSIALKNFDLNLERKNDIVIQGKVCYSFSIKMDFATIYEGDGST-IDLQFALNASTT 118 YNLKSI LKNFDL RK D++I+ KV Y+F ++M F T+Y G G+T I+L F L A T Sbjct: 184 YNLKSIELKNFDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTV 243 Query: 119 NFANLTDLQDSFWQSGKDLNTQLFWKPSVHKLISNGTNDLTTLAQTALGDSLFDTKVNLT 178 NFANL DLQ++F + G DL+TQLFW P+V+KL N NDLT +A+T +G+S F T VNL Sbjct: 244 NFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLA 303 Query: 179 ESVIEINN-QTDVATKFREKVLNSFKQEREKAHAEHVXXXXXXXXXXXXXXXXXXXXXXX 237 +SVIE + Q V F E+VL FK+ERE A + Sbjct: 304 KSVIEYDKVQPLVKQAFEERVLTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAE 363 Query: 238 -----------XXXXXXXXXXFNKSLTAASEFKQYWSKKNKDVTDKKQLAEALK--ISLE 284 + KS + +FK YW K KDVT K L +ALK I+ Sbjct: 364 EKRKAEEAKRNQEKARREREAYEKSFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIATP 423 Query: 285 ADRNRTFSFLIAGFRTAIDWYYNAKKENNDAKQKAFGSQGIQFPKD--GLNGIYMPDWLR 342 A RNRTFS LI GF + ++ Y+NA K + + K+ AFG +GIQFP+ G+NG+YM ++LR Sbjct: 424 AYRNRTFSLLIKGFASGVERYFNANKNDKELKKLAFGEKGIQFPRADAGVNGLYMSNFLR 483 Query: 343 GELTSKSNINLKIKELKVQNKIESPTINWIDGVGIKQDKANPFNYRFEVDIKYTGGYQLY 402 ELTSK+ +L +K++KV+N +E + W D GI +ANP+ + + IKY G Y ++ Sbjct: 484 HELTSKAKFSLNLKDIKVENTVEDTQLYWKDN-GIHLKQANPYKFNLNIKIKYNGWYNVH 542 Query: 403 GFYAFAALFTKFPSSWSGEMNLKFIVDGSIPVYTVAKKDYPGSLFQFNDKDELLFTLYVK 462 + A P+ WSGEMNL F+V+G + V K DYPG+ FQF DK+ELLFTL V+ Sbjct: 543 WWNWLPAKILGIPTDWSGEMNLTFVVNGDLS-EIVDKHDYPGTFFQFTDKNELLFTLAVR 601 Query: 463 EQISVADPNFMNLLRGQNLHDLELVTGATKPPVVDLASYLHFVLLS 508 EQI V + +FM LL+ QNLH+L+L +GATKPPVVDLASY HFVLL+ Sbjct: 602 EQIKVDNNHFMGLLKSQNLHNLQLASGATKPPVVDLASYFHFVLLT 647 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 106 bits (265), Expect = 5e-025, Method: Compositional matrix adjust. Identities = 128/549 (23%), Positives = 222/549 (40%), Gaps = 55/549 (10%) Query: 5 QAEINAANAVFPVSDST----KIPKVSQKLFGLLGDGFFPQLHPKGLKIADNIAALFDQY 60 Q +I A+ +FP + + P V L G GFFP L G + + + F + Sbjct: 118 QQKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDF 177 Query: 61 NLKSIALKNFDLNLERKNDIVIQGKVCYSFSIKMDFATIYEGDGSTIDLQFALNASTTNF 120 + +KNF+++L +NDI+ KV Y+F +K + A + + S +D F T NF Sbjct: 178 RINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNF 237 Query: 121 ANLTDLQDSFWQSGKDLNTQLFWKPSVHKLISNGTNDLTTLAQTALGDSLFDTKVNLTES 180 +++ + + F L + + K +VHKL NG+ D T +A L D +++L +S Sbjct: 238 SDIENFNEIF-NRKPALQFRFYTKINVHKLSFNGS-DSTYIANILLQDQFNLLEIDLNKS 295 Query: 181 VIEINNQTDVATKFREKVLNSFKQER-------EKAHAEHVXXXXXXXXXXXXXXXXXXX 233 + ++ + + +F ++ + Q+R E+ Sbjct: 296 IYALDLE-NAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKE 354 Query: 234 XXXXXXXXXXXXXXFNKSLTAASEFKQYWSK----------KNK-DVTDKKQLAEALKIS 282 K+L F ++S NK +V ++ L +AL+IS Sbjct: 355 KAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQIS 414 Query: 283 LEADRNRTFSFLIAGFRTAI-----DWYYNAKKENNDAKQKAFGSQG---------IQFP 328 + TF + G++ +NA +++ A Q AFG + P Sbjct: 415 YSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDK-AFQYAFGLGPNTSEQQLGRVTLP 473 Query: 329 KDGLNGIYMPDWLRGELTSKSNINL---KIKELKVQNKIESPTINWIDGVGIKQDK---- 381 G GI M DWLR L ++ L K E + WI K ++ Sbjct: 474 GYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNREYGD 533 Query: 382 ANPFN---YRFEVDIKYTGGYQLYGFYAFAALFTKFPSSWSGEMNLKFIVDGSIPVYTVA 438 F YRF++ I + L + A P SWSG++ + DG +P Y + Sbjct: 534 GERFKGKAYRFKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVPYYRLH 593 Query: 439 KKDYPGSLFQFNDKDELLFTLYVKEQIS-VADPNFMNLLRGQNLHDLELVTGATKPPVVD 497 ++ D +LLF + ++++ V + + LLR QNLH+LE + P +D Sbjct: 594 TTP---PQYRLTDDMKLLFVPHSIQRVTAVGNESINGLLRSQNLHNLERQSYEATAP-ID 649 Query: 498 LASYLHFVL 506 L SY+ + + Sbjct: 650 LISYMLYAI 658 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508248|ref|NP_110197.1| membrane export protein family [Mycoplasma pneumoniae M129] (427 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 308 6e-086 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 294 1e-081 ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 64 4e-012 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 308 bits (789), Expect = 6e-086, Method: Compositional matrix adjust. Identities = 173/425 (40%), Positives = 251/425 (59%), Gaps = 15/425 (3%) Query: 1 MKFHTVYVGKNTKIDLDFALQAQTNNFSSLEELRESFTNSGQTLSTQLFWKPVIDKLITD 60 M F Y G N ++L F L+AQT+NF +L+EL+ SF +G L+TQLFWKP+I+KL+ Sbjct: 72 MDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSF--NGNDLNTQLFWKPLINKLVDK 129 Query: 61 EGNDLTTIARTAIGENLFDLKVNLTDSVID-GTVLTKARKSFEERILNPFIEQRKEAKRI 119 NDLT+IA+TA+ ++LF N+ +SV+ L A+ FE+ I+ PF ++R++AK Sbjct: 130 NQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPFKKEREKAKAD 189 Query: 120 HDXXXXXXXXXXXXXXXXXXXXXXXXXXLIREKTRFLSSFNNVKSFKDYWKGKGKNVEIK 179 ++ L ++ +F SF N K FKDYWK + K+V K Sbjct: 190 YEEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKDYWKNQKKDVTDK 249 Query: 180 SQLIEVLKLAFKTDRNRTFIFLTDAFRNAV-DWYYNAXXXXXXXXXXAFGDVGIELPKLG 238 +QLI+ LK +F D+N+TF L ++F A D+Y N AF + GI+ P+ G Sbjct: 250 TQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKAFSEKGIQFPRQG 309 Query: 239 VDGIFIPNWLRWELKHRANLKLNLQSVTTKDIHNDINGWGVPKQIFWNEAKNGIEFRQTY 298 ++G+++ +WLR +L ++KLNL S+ ++ N+ I W NGIEFRQ Y Sbjct: 310 LEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENN-------PTIDW--KNNGIEFRQHY 360 Query: 299 PFKYAFQIRMKYTGDYGLKGIYWTLANWGLGGIPPEWKGEMELVLNVDGQLADWITSKKD 358 P+K+ F+I +KY G Y L G++ A GIP W GEM++ VDG L + D Sbjct: 361 PYKFKFEIDIKYQGGYKLTGLFSWFA--PFSGIPSSWNGEMDVKFIVDGDLDYNLVQNTD 418 Query: 359 YPGTLFQFRDDKLLFTLHITQWINVQDQRFKGLLKKQQLDVLEPWGGDIKVPVVDLASYL 418 YPG+LFQF+D++LLFTLH+ + I VQD +F LLK+Q L L+ G K PVVDLASYL Sbjct: 419 YPGSLFQFKDNQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNGATKPPVVDLASYL 478 Query: 419 HFLIL 423 H+L+L Sbjct: 479 HYLVL 483 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 294 bits (753), Expect = 1e-081, Method: Compositional matrix adjust. Identities = 179/445 (40%), Positives = 250/445 (56%), Gaps = 30/445 (6%) Query: 1 MKFHTVYVGK-NTKIDLDFALQAQTNNFSSLEELRESFTNSGQTLSTQLFWKPVIDKLIT 59 M+F TVYVG NT I+LDF L+AQT NF++L++L+ +F G LSTQLFW P ++KL Sbjct: 218 MQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTD 277 Query: 60 DEGNDLTTIARTAIGENLFDLKVNLTDSVID-GTVLTKARKSFEERILNPFIEQRKEAKR 118 + GNDLT IA+T IGE+ F VNL SVI+ V +++FEER+L PF ++R+ AK+ Sbjct: 278 NAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQAFEERVLTPFKKEREAAKK 337 Query: 119 IHDXXXXXXXXXXXXXXXXXXXXXXXXXXLI-----------REKTRFLSSFNNVKSFKD 167 ++ RE+ + SFN+ K FK Sbjct: 338 AYEEEQRRLEEERKRQLEELRRREAEEKRKAEEAKRNQEKARREREAYEKSFNSFKDFKF 397 Query: 168 YWKGKGKNVEIKSQLIEVLKLAFKTD--RNRTFIFLTDAFRNAVDWYYNAXXXXXXXXXX 225 YW KGK+V K+ LI+ LK A T RNRTF L F + V+ Y+NA Sbjct: 398 YWLTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGVERYFNANKNDKELKKL 457 Query: 226 AFGDVGIELPKL--GVDGIFIPNWLRWELKHRANLKLNLQSVTTKDIHNDINGWGVPKQI 283 AFG+ GI+ P+ GV+G+++ N+LR EL +A LNL+ + ++ D Q+ Sbjct: 458 AFGEKGIQFPRADAGVNGLYMSNFLRHELTSKAKFSLNLKDIKVENTVEDT-------QL 510 Query: 284 FWNEAKNGIEFRQTYPFKYAFQIRMKYTGDYGLKGIYWTLANWGLGGIPPEWKGEMELVL 343 +W + NGI +Q P+K+ I++KY G Y + +W + GIP +W GEM L Sbjct: 511 YWKD--NGIHLKQANPYKFNLNIKIKYNGWYNVH--WWNWLPAKILGIPTDWSGEMNLTF 566 Query: 344 NVDGQLADWITSKKDYPGTLFQFRD-DKLLFTLHITQWINVQDQRFKGLLKKQQLDVLEP 402 V+G L++ I K DYPGT FQF D ++LLFTL + + I V + F GLLK Q L L+ Sbjct: 567 VVNGDLSE-IVDKHDYPGTFFQFTDKNELLFTLAVREQIKVDNNHFMGLLKSQNLHNLQL 625 Query: 403 WGGDIKVPVVDLASYLHFLILADKS 427 G K PVVDLASY HF++L +KS Sbjct: 626 ASGATKPPVVDLASYFHFVLLTEKS 650 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 63.5 bits (153), Expect = 4e-012, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 20/200 (10%) Query: 232 IELPKLGVDGIFIPNWLRWELKHRANLKL----NLQSVTTKDIHNDINGWGVPKQIFWN- 286 + LP G +GI + +WLRW L + + L N+++ D ++ + W P N Sbjct: 470 VTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNR 529 Query: 287 EAKNGIEFRQTYPFKYAFQIRMKYTGDYGLKGIYWTLANWGLGGIPPEWKGEMELVLNVD 346 E +G F+ Y F++ + + + L +WT+A G IP W G++ + D Sbjct: 530 EYGDGERFKGK---AYRFKLSISFELEGHLTAHWWTIA--FRGSIPGSWSGKLRVTHEFD 584 Query: 347 GQLADWITSKKDYPGTLFQFR---DDKLLFTLHITQWIN-VQDQRFKGLLKKQQLDVLEP 402 G + + T Q+R D KLLF H Q + V ++ GLL+ Q L LE Sbjct: 585 GDVPYYRLHT-----TPPQYRLTDDMKLLFVPHSIQRVTAVGNESINGLLRSQNLHNLER 639 Query: 403 WGGDIKVPVVDLASYLHFLI 422 + P +DL SY+ + I Sbjct: 640 QSYEATAP-IDLISYMLYAI 658 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508249|ref|NP_110198.1| membrane export protein family [Mycoplasma pneumoniae M129] (458 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 365 e-103 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 330 2e-092 ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 100 3e-023 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 365 bits (937), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/461 (43%), Positives = 296/461 (64%), Gaps = 22/461 (4%) Query: 4 VPKVPENFFSFFQEDYFPRLTPRGLNIADNVASLFNDYNLNSIDFTGFNLKLLRQNDIVL 63 +PKVP+NFF F E++FP+L P+GLNI +++ +FN YNL I FNL+L+++NDIV+ Sbjct: 1 MPKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVI 60 Query: 64 KNKVRYNFALQMGFDTVYAGKNTTI-LKFSLQAQTINFTSLQELRDSFENNGNTLSTHLF 122 K+K+RY+F ++M F+ Y G N T+ L+F L+AQT NF +LQEL++SF NGN L+T LF Sbjct: 61 KDKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSF--NGNDLNTQLF 118 Query: 123 WKPVVEQLTTDGGNDLTNIAKTAIGESLFNLKVNLTDSI--IDQSVLQQAQKSFEDKILD 180 WKP++ +L NDLT+IAKTA+ +SLF N+ +S+ ID+ L A+ FE +I++ Sbjct: 119 WKPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQ-LDLAKTKFEKEIIE 177 Query: 181 PFHAERVEAKRIHDXXXXXXXXXXXXXXXXXXXXXDEARRIREEHWAFYQSTRDVKSFKE 240 PF ER +AK ++ +EA+R++E+ F +S + K FK+ Sbjct: 178 PFKKEREKAKADYEEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKD 237 Query: 241 FWAKRGKNVADKKQLIEALKLSFQAKQNPTFELLTNAFRNAINWYY-NHKKHDEEAKRTA 299 +W + K+V DK QLI+ALK SF A +N TF LL N+F A + YY N+KK + E + A Sbjct: 238 YWKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKA 297 Query: 300 FGSGGISFAQSGLNGIFMPNWLRWELINRANIQLQLQNVKV--RENNFEVNGWGVPVSIN 357 F GI F + GL G++M +WLR +L + +I+L L ++K+ +ENN +I+ Sbjct: 298 FSEKGIQFPRQGLEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENN---------PTID 348 Query: 358 WNDHNNGINYRATTPWTYGFEITMNYKGSYGLKGIYWTLANWGLGGIPPEWSGDMELKFQ 417 W NNGI +R P+ + FEI + Y+G Y L G++ A GIP W+G+M++KF Sbjct: 349 W--KNNGIEFRQHYPYKFKFEIDIKYQGGYKLTGLFSWFA--PFSGIPSSWNGEMDVKFI 404 Query: 418 IDGKLANWITQKQDYPGSLFQFQNDKLLFTLHVVQRITVKD 458 +DG L + Q DYPGSLFQF++++LLFTLHV ++I V+D Sbjct: 405 VDGDLDYNLVQNTDYPGSLFQFKDNQLLFTLHVKEQIKVQD 445 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 330 bits (846), Expect = 2e-092, Method: Compositional matrix adjust. Identities = 192/477 (40%), Positives = 280/477 (58%), Gaps = 37/477 (7%) Query: 2 LTVPKVPENFFSFFQEDYFPRLTPRGLNIADNVASLFNDYNLNSIDFTGFNLKLLRQNDI 61 + +PKVP F ++ FP+L P+GLNI+DN+A+LF YNL SI+ F+L LR+ D+ Sbjct: 145 VKLPKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFERYNLKSIELKNFDLAFLRKADV 204 Query: 62 VLKNKVRYNFALQMGFDTVYAGKNTTI--LKFSLQAQTINFTSLQELRDSFENNGNTLST 119 ++K+KVRYNF +QM F TVY G T+ L F+L+AQT+NF +LQ+L+++F GN LST Sbjct: 205 IIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLST 264 Query: 120 HLFWKPVVEQLTTDGGNDLTNIAKTAIGESLFNLKVNLTDSIIDQSVLQQ-AQKSFEDKI 178 LFW P V +LT + GNDLT+IAKT IGES F VNL S+I+ +Q +++FE+++ Sbjct: 265 QLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQAFEERV 324 Query: 179 LDPFHAERVEAKRIHDXXXXXXXXXXXXXXXXXXXX--------------XDEARRIREE 224 L PF ER AK+ ++ ++ARR RE Sbjct: 325 LTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAEEKRKAEEAKRNQEKARRERE- 383 Query: 225 HWAFYQSTRDVKSFKEFWAKRGKNVADKKQLIEALK--LSFQAKQNPTFELLTNAFRNAI 282 A+ +S K FK +W +GK+V K LI+ALK ++ A +N TF LL F + + Sbjct: 384 --AYEKSFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGV 441 Query: 283 NWYYNHKKHDEEAKRTAFGSGGISF--AQSGLNGIFMPNWLRWELINRANIQLQLQNVKV 340 Y+N K+D+E K+ AFG GI F A +G+NG++M N+LR EL ++A L L+++KV Sbjct: 442 ERYFNANKNDKELKKLAFGEKGIQFPRADAGVNGLYMSNFLRHELTSKAKFSLNLKDIKV 501 Query: 341 RENNFEVNGWGVPVSINWNDHNNGINYRATTPWTYGFEITMNYKGSYGLKGIYWTLANWG 400 EN E + W D NGI+ + P+ + I + Y G Y + +W Sbjct: 502 -ENTVE------DTQLYWKD--NGIHLKQANPYKFNLNIKIKYNGWYNVH--WWNWLPAK 550 Query: 401 LGGIPPEWSGDMELKFQIDGKLANWITQKQDYPGSLFQFQN-DKLLFTLHVVQRITV 456 + GIP +WSG+M L F ++G L+ I K DYPG+ FQF + ++LLFTL V ++I V Sbjct: 551 ILGIPTDWSGEMNLTFVVNGDLSE-IVDKHDYPGTFFQFTDKNELLFTLAVREQIKV 606 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 100 bits (249), Expect = 3e-023, Method: Compositional matrix adjust. Identities = 114/497 (22%), Positives = 212/497 (42%), Gaps = 63/497 (12%) Query: 5 PKVPENFFSFFQEDYFPRLTPRGLNIADNVASLFNDYNLNSIDFTGFNLKLLRQNDIVLK 64 P V + ++ +FP L G N+ + V F D+ +N FN+ L+ +NDI+ Sbjct: 141 PNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDFRINDYKIKNFNVDLVSENDIIKH 200 Query: 65 NKVRYNFALQMGFDTVYA-GKNTTILKFSLQAQTINFTSLQELRDSFENNGNTLSTHLFW 123 +KVRY F ++ V + K+ F +T NF+ ++ + F N L + Sbjct: 201 DKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNFSDIENFNEIF-NRKPALQFRFYT 259 Query: 124 KPVVEQLTTDGGNDLTNIAKTAIGESLFNLKVNLTDSIIDQSVLQQAQKSFEDKILDPFH 183 K V +L+ +G +D T IA + + L+++L SI L+ A++ F+ + + P + Sbjct: 260 KINVHKLSFNG-SDSTYIANILLQDQFNLLEIDLNKSIYALD-LENAKERFDKEFVQPLY 317 Query: 184 AERVEAK-------RIHDXXXXXXXXXXXXXXXXXXXXXDEARRIREEHWAFYQSTRDVK 236 +R EAK R ++ +R++E ++ ++ Sbjct: 318 QKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKEKAEKDKRVKEAQNNLQKALGNLD 377 Query: 237 SFKEFWAK-----------RGKNVADKKQLIEALKLSFQAKQNPTF------------EL 273 +F F++ NV ++ L +AL++S+ + TF +L Sbjct: 378 TFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQISYSNFKTWTFYISLLGWKEGSVKL 437 Query: 274 LTNAFRNAINWYYNHKKHDEEAKRTAFGSGG---------ISFAQSGLNGIFMPNWLRWE 324 L NA+ D++A + AFG G ++ G GI M +WLRW Sbjct: 438 LKKPIWNAL--------RDDKAFQYAFGLGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWA 489 Query: 325 LINRANIQLQ-LQNVK---VRENNFEVNGWGVPVSINWN-DHNNGINYRATTPWTYGFEI 379 L + L +NV+ + + N + + W P + N ++ +G ++ Y F++ Sbjct: 490 LGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNREYGDGERFKGK---AYRFKL 546 Query: 380 TMNYKGSYGLKGIYWTLANWGLGGIPPEWSGDMELKFQIDGKLANWITQKQDYPGSLFQF 439 +++++ L +WT+A G IP WSG + + + DG + + + P Sbjct: 547 SISFELEGHLTAHWWTIA--FRGSIPGSWSGKLRVTHEFDGDVPYY--RLHTTPPQYRLT 602 Query: 440 QNDKLLFTLHVVQRITV 456 + KLLF H +QR+T Sbjct: 603 DDMKLLFVPHSIQRVTA 619 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508250|ref|NP_110199.1| membrane export protein family [Mycoplasma pneumoniae M129] (260 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 249 2e-068 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 190 1e-050 ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitali... 72 6e-015 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 249 bits (637), Expect = 2e-068, Method: Compositional matrix adjust. Identities = 125/252 (49%), Positives = 171/252 (67%), Gaps = 3/252 (1%) Query: 4 FKEYWXXXXXXXXXXXXLLEALKLSFAKEQNKTFAFLIKNFQDGISNYYPNDQEDQSEAA 63 FK+YW L++ALK SFA ++NKTF+ LI +F S+YY N+++D+SE A Sbjct: 235 FKDYWKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENA 294 Query: 64 KTAFGTQGIAFPQSGLKGIFMSEWLRKQLGEKAKINLDIKSLKVTDSKISPTIKWNKDIG 123 K AF +GI FP+ GL+G++MS+WLR +L I L++ S+K+ + + +PTI W K+ G Sbjct: 295 KKAFSEKGIQFPRQGLEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENNPTIDW-KNNG 353 Query: 124 IKRNQDKPYNFRFEIDIEYQGNYKLSWLEAIIAKFSGIPGEWKGKLNLKFIVDGDLSWEI 183 I+ Q PY F+FEIDI+YQG YKL+ L + A FSGIP W G++++KFIVDGDL + + Sbjct: 354 IEFRQHYPYKFKFEIDIKYQGGYKLTGLFSWFAPFSGIPSSWNGEMDVKFIVDGDLDYNL 413 Query: 184 VQKPDYPGSXXXXXXXXXXXXXXXHVWEKITVQEPEFMELIKSQNLHNLELRTESTKPPV 243 VQ DYPGS HV E+I VQ+ +FM+L+K QNLHNL+LR +TKPPV Sbjct: 414 VQNTDYPGS--LFQFKDNQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNGATKPPV 471 Query: 244 VDLASYLHYQLL 255 VDLASYLHY +L Sbjct: 472 VDLASYLHYLVL 483 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 190 bits (483), Expect = 1e-050, Method: Compositional matrix adjust. Identities = 110/256 (42%), Positives = 151/256 (58%), Gaps = 8/256 (3%) Query: 4 FKEYWXXXXXXXXXXXXLLEALKLSFAKE--QNKTFAFLIKNFQDGISNYYPNDQEDQSE 61 FK YW L++ALK + A +N+TF+ LIK F G+ Y+ ++ D+ E Sbjct: 395 FKFYWLTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGVERYFNANKNDK-E 453 Query: 62 AAKTAFGTQGIAFPQS--GLKGIFMSEWLRKQLGEKAKINLDIKSLKVTDSKISPTIKWN 119 K AFG +GI FP++ G+ G++MS +LR +L KAK +L++K +KV ++ + W Sbjct: 454 LKKLAFGEKGIQFPRADAGVNGLYMSNFLRHELTSKAKFSLNLKDIKVENTVEDTQLYW- 512 Query: 120 KDIGIKRNQDKPYNFRFEIDIEYQGNYKLSWLEAIIAKFSGIPGEWKGKLNLKFIVDGDL 179 KD GI Q PY F I I+Y G Y + W + AK GIP +W G++NL F+V+GDL Sbjct: 513 KDNGIHLKQANPYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDWSGEMNLTFVVNGDL 572 Query: 180 SWEIVQKPDYPGSXXXXXXXXXXXXXXXHVWEKITVQEPEFMELIKSQNLHNLELRTEST 239 S EIV K DYPG+ V E+I V FM L+KSQNLHNL+L + +T Sbjct: 573 S-EIVDKHDYPGTFFQFTDKNELLFTLA-VREQIKVDNNHFMGLLKSQNLHNLQLASGAT 630 Query: 240 KPPVVDLASYLHYQLL 255 KPPVVDLASY H+ LL Sbjct: 631 KPPVVDLASYFHFVLL 646 >ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length = 666 Score = 72.0 bits (175), Expect = 6e-015, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 26/199 (13%) Query: 72 IAFPQSGLKGIFMSEWLRKQLGEKAKINL----DIKSLKVTDSK------ISP-TIKWNK 120 + P G +GI MS+WLR LG L ++++ + D+ ISP T K N+ Sbjct: 470 VTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNR 529 Query: 121 DIGI-KRNQDKPYNFRFEIDIEYQGNYKLSWLEAIIAKFSGIPGEWKGKLNLKFIVDGDL 179 + G +R + K Y F+ I E +G+ W IA IPG W GKL + DGD+ Sbjct: 530 EYGDGERFKGKAYRFKLSISFELEGHLTAHWW--TIAFRGSIPGSWSGKLRVTHEFDGDV 587 Query: 180 SWEIVQK--PDYPGSXXXXXXXXXXXXXXXHVWEKITVQEPEFME-LIKSQNLHNLELRT 236 + + P Y H +++T E + L++SQNLHNLE ++ Sbjct: 588 PYYRLHTTPPQY------RLTDDMKLLFVPHSIQRVTAVGNESINGLLRSQNLHNLERQS 641 Query: 237 -ESTKPPVVDLASYLHYQL 254 E+T P +DL SY+ Y + Sbjct: 642 YEATAP--IDLISYMLYAI 658 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508251|ref|NP_110200.1| membrane export protein family [Mycoplasma pneumoniae M129] (154 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genital... 124 3e-031 ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitali... 110 7e-027 >ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length = 485 Score = 124 bits (312), Expect = 3e-031, Method: Compositional matrix adjust. Identities = 64/132 (48%), Positives = 89/132 (67%), Gaps = 3/132 (2%) Query: 1 MRYSFVIQWDFETVYTGVNSTTNLAFSVKAMTTNFANLQELQDSLVLRGQNLTTQLFWKP 60 +RYSF I+ DFE Y G N+T NL F +KA T+NF NLQELQ+S G +L TQLFWKP Sbjct: 64 IRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSF--NGNDLNTQLFWKP 121 Query: 61 TVKRLVLGNNNDLTTVAKAAVGDNLFTTQANLTKSVLD-QTVLKEAESRFEATVLKPFIE 119 + +LV N NDLT++AK AV D+LF + N+ SVL L A+++FE +++PF + Sbjct: 122 LINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPFKK 181 Query: 120 ARQKALAEHQAH 131 R+KA A+++ Sbjct: 182 EREKAKADYEEQ 193 >ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length = 650 Score = 110 bits (275), Expect = 7e-027, Method: Compositional matrix adjust. Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 8/129 (6%) Query: 1 MRYSFVIQWDFETVYTGV-NSTTNLAFSVKAMTTNFANLQELQDSLVLRGQNLTTQLFWK 59 +RY+F +Q F+TVY G N+ NL F++KA T NFANLQ+LQ++ V G +L+TQLFW Sbjct: 210 VRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLSTQLFWI 269 Query: 60 PTVKRLVLGNNNDLTTVAKAAVGDNLFTTQANLTKSVLD----QTVLKEAESRFEATVLK 115 PTV +L NDLT +AK +G++ F T NL KSV++ Q ++K+A FE VL Sbjct: 270 PTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQA---FEERVLT 326 Query: 116 PFIEARQKA 124 PF + R+ A Sbjct: 327 PFKKEREAA 335 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508252|ref|NP_110201.1| hypothetical protein MPN513 [Mycoplasma pneumoniae M129] (150 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508253|ref|NP_110202.1| hypothetical protein MPN514 [Mycoplasma pneumoniae M129] (120 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508254|ref|NP_110203.1| DNA-directed RNA polymerase beta' chain [Mycoplasma pneumoniae M129] (1290 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073010.1| DNA-directed RNA polymerase, subunit beta' (rpo... 2360 0.0 >ref|NP_073010.1| DNA-directed RNA polymerase, subunit beta' (rpoC) [Mycoplasma genitalium G-37] Length = 1292 Score = 2360 bits (6115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1150/1270 (90%), Positives = 1202/1270 (94%) Query: 21 SIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEAIFGPVKDYECACGKFKKIKYRG 80 SIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEAIFGPVKDYECACGKFKKIKYRG Sbjct: 23 SIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEAIFGPVKDYECACGKFKKIKYRG 82 Query: 81 VRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKELPSPSKISLVLNISYKEVEQVLY 140 VRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKELPSPSKISLVLNISYKEVEQVLY Sbjct: 83 VRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKELPSPSKISLVLNISYKEVEQVLY 142 Query: 141 FVNYIVLDTGKIKDPKIMPFKFKEVLDLAGKGSLTTRQKMRRVIGYIFRNLIKNRSSEDY 200 FVNYIVLDTGKIKD KIMPFKFKEVLDL GKGSL+TRQKMRRVIGYIFRNLIK++SSEDY Sbjct: 143 FVNYIVLDTGKIKDDKIMPFKFKEVLDLTGKGSLSTRQKMRRVIGYIFRNLIKSKSSEDY 202 Query: 201 RKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGAEAILELLNKIDLNYEFSKLNDA 260 RKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGAEAILELLNKIDLN EFS+LNDA Sbjct: 203 RKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGAEAILELLNKIDLNLEFSRLNDA 262 Query: 261 LRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMILHTXXXXXXXXXXXXQLDGAKF 320 LRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMILHT QLDGAKF Sbjct: 263 LRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMILHTVPVIPPDIRPIIQLDGAKF 322 Query: 321 TTSDINNFYXXXXXXXXXXXXXLEDGTVPAIVVNNEKRLLQESVDALFDNSSRHKPALSK 380 TTSDINNFY LEDGTVP+IVVNNEKRLLQESVDALFDNSSRHKP+LSK Sbjct: 323 TTSDINNFYRRVIIRNDRLRRILEDGTVPSIVVNNEKRLLQESVDALFDNSSRHKPSLSK 382 Query: 381 DKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVVGPELKMYEVGIPALMILKLFKP 440 DKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVVGPELKMYEVGIPALMILKLFKP Sbjct: 383 DKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVVGPELKMYEVGIPALMILKLFKP 442 Query: 441 FIIHGLINKFDSNGNEIRPIASSIRQAEDMIKNQDDLIWGIVYDVIKDRPVLLNRAPTLH 500 FIIHGLINKFD NGNEIRPIA+SIRQAEDMIKNQDDLIWGIVYDVIKDRPVLLNRAPTLH Sbjct: 443 FIIHGLINKFDENGNEIRPIAASIRQAEDMIKNQDDLIWGIVYDVIKDRPVLLNRAPTLH 502 Query: 501 RLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAVHVPLSENAVNEARAILLASKHI 560 RLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAVHVPLSENAVNEARA+LLASKHI Sbjct: 503 RLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAVHVPLSENAVNEARAVLLASKHI 562 Query: 561 LGLKDGRPIVTPTQDMVLGNYYLTTERKGQTGEGIIFGTVHEARAAYEAGKVHLHAIVGI 620 LGLKDGRPIVTPTQDMVLGNYYLTTERKGQ GEGIIF TV+EARAAYE+ KVHLHAIVGI Sbjct: 563 LGLKDGRPIVTPTQDMVLGNYYLTTERKGQLGEGIIFSTVYEARAAYESQKVHLHAIVGI 622 Query: 621 STKAFPNKHFEAQGTLITTVGKIIFNDVLGDNIPYINEGEFDEHACPQKFIVPPSGDVRA 680 STKAFPNK F QGTLITTVGKIIFNDVLG+N+PYIN+GEFDE+ACP+KFIV DVR Sbjct: 623 STKAFPNKKFACQGTLITTVGKIIFNDVLGNNVPYINDGEFDENACPEKFIVKQGEDVRQ 682 Query: 681 AIAAHQVLPAFGKKVISKLIDLLYTVVEFKDLPRILENIKALGFKYSTHSSTTVSVFDIP 740 +I HQ++PAF KKVISKLIDLLY ++EFKDLP+ L+NIKALGFKYST SSTTVSVFDIP Sbjct: 683 SILKHQIIPAFSKKVISKLIDLLYLLLEFKDLPKTLDNIKALGFKYSTFSSTTVSVFDIP 742 Query: 741 KYSNKQQYFDEADQQVLKYKQFYNKGLLTDDERYKRVVKLWNGVKEKVSSEIQDLIKREE 800 KY+NKQ YFD ADQQVLKYKQFYNKGLLTDDERYKRVVKLWN VKEKVS EIQ+LIK+E+ Sbjct: 743 KYTNKQNYFDSADQQVLKYKQFYNKGLLTDDERYKRVVKLWNNVKEKVSDEIQNLIKQEQ 802 Query: 801 YRDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNYERNNQSKIIKDTIEVPIKHSFLE 860 YRDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNYERNNQSKIIKDTIEVPIKHSF E Sbjct: 803 YRDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNYERNNQSKIIKDTIEVPIKHSFFE 862 Query: 861 GLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHELIINHDDCGTRKGIVVEAI 920 GLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHELIINHDDCGTRKGIVVEAI Sbjct: 863 GLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHELIINHDDCGTRKGIVVEAI 922 Query: 921 VETKTRSLVESLFDRIVNRYTIGPILDPETKAEIVPANSLITQELAKQICATSIKQVLVR 980 VETKT+SL+ESLFDRIVNRY+I PI+DPET+ IV ANSLIT +LAKQICATSIK+VLVR Sbjct: 923 VETKTKSLIESLFDRIVNRYSITPIVDPETQKTIVEANSLITTQLAKQICATSIKEVLVR 982 Query: 981 SVIYCERENGVCQYCFGVDLSTGKLVELGTAVGVIAAQSIGEPGTQLTMRTFHTGGVSTE 1040 SVIYCERENG+CQYCFG+DLSTGKLVELGTAVGVIAAQSIGEPGTQLTMRTFHTGGVSTE Sbjct: 983 SVIYCERENGICQYCFGIDLSTGKLVELGTAVGVIAAQSIGEPGTQLTMRTFHTGGVSTE 1042 Query: 1041 NNLAQGFERLKQIFEVVAPKDYERCVISEVKGVVKSITTTQNAQEVLIESSVDERTYSIP 1100 NNLAQGFERLKQIFEVV PKD+E+ VISEVKG VKSITT QNAQEV+I+S+VDER Y+IP Sbjct: 1043 NNLAQGFERLKQIFEVVTPKDFEKAVISEVKGTVKSITTVQNAQEVVIKSNVDERIYTIP 1102 Query: 1101 FSAQLRVKVGDAVELGSKITEGSIDIRQLLRVAGIQRVRQYMIVEIQKVYRIQGIEIADK 1160 FSAQ+RV VGD V GSKITEGS+DI+QLLR+AGIQRVRQYMIVEIQKVYRIQGI+IADK Sbjct: 1103 FSAQIRVHVGDQVSPGSKITEGSVDIKQLLRIAGIQRVRQYMIVEIQKVYRIQGIDIADK 1162 Query: 1161 YVEIIIRQLTSLLQVTDAGSSNLFVGQLVHSHHLNELNKSLLLSGKMPVIAINQVFGIDE 1220 YVEIIIRQLT+LLQVTDAG+SNLFVGQLVHSH+LNELNKSLLL+GKMPVIAINQVFGIDE Sbjct: 1163 YVEIIIRQLTNLLQVTDAGNSNLFVGQLVHSHYLNELNKSLLLAGKMPVIAINQVFGIDE 1222 Query: 1221 AASKSNSFLSAASFQDTKKILTDAAVKTQVDYLLGLKENVIIGGKIPAGTGFLTDEELAY 1280 AASKSNSFLSAASFQDTKKILTDAAVK QVDYLLGLKENVIIGGKIPAGTGFLTDEEL + Sbjct: 1223 AASKSNSFLSAASFQDTKKILTDAAVKNQVDYLLGLKENVIIGGKIPAGTGFLTDEELTF 1282 Query: 1281 LGAKTVQEEY 1290 LG+KTV EEY Sbjct: 1283 LGSKTVAEEY 1292 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508255|ref|NP_110204.1| RNA polymerase beta subunit [Mycoplasma pneumoniae M129] (1391 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073011.1| DNA-directed RNA polymerase, subunit beta (rpoB... 2434 0.0 >ref|NP_073011.1| DNA-directed RNA polymerase, subunit beta (rpoB) [Mycoplasma genitalium G-37] Length = 1390 Score = 2434 bits (6307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1183/1391 (85%), Positives = 1286/1391 (92%), Gaps = 1/1391 (0%) Query: 1 MSQKPSFFQKKYSPTATRRYYGKIATDFVQPNLADIQIRSYQTFLDHDLENLIAAYFPIK 60 MSQK +FFQK+YSPTATRRYYGKI T+F+QPNLADIQI+SYQ FLDHDLE LIA+YFPIK Sbjct: 1 MSQKSNFFQKRYSPTATRRYYGKIETNFIQPNLADIQIKSYQKFLDHDLEKLIASYFPIK 60 Query: 61 SPNDRYTINFKGLRRTAPERNEAQSRSESKTYEIGIYADLELIDSATGTIKKPRKSKKNS 120 SPNDRYTINF+GL RT PER+EAQSR++SKTYE+GIYADLEL+D+ GT+KK RKSKKN Sbjct: 61 SPNDRYTINFRGLHRTEPERDEAQSRAQSKTYEVGIYADLELVDNDKGTVKKARKSKKNI 120 Query: 121 ATSSVDGVFLTNLPLITRDGVFIVNGIEKFVIAQITRSPGIYMLTXXXXXXXXXXXXVQE 180 A S+ +GVFL ++PLIT DGVFI+NGIEKFVI+QITRSPGIYMLT VQE Sbjct: 121 A-SNTNGVFLASMPLITHDGVFIINGIEKFVISQITRSPGIYMLTKSQLKLSNSRKRVQE 179 Query: 181 GYVCEVLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGMSGKEI 240 GYVCEVLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFG++ +EI Sbjct: 180 GYVCEVLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGLNNREI 239 Query: 241 LKVFKNNEFITRSLEAEVYNAKDFLNNVDPEIKNLLREFRDGKTDLRRKGIASDQKIRSL 300 LK+FKNNEFI RSLEAE+YNAKDFL+NVDPEIKNLL+EFRDGKTDLRRKGIASDQK+RSL Sbjct: 240 LKIFKNNEFIKRSLEAEIYNAKDFLSNVDPEIKNLLKEFRDGKTDLRRKGIASDQKLRSL 299 Query: 301 VSDYVLLEKEHKALSEAKPNDPKVGQLEADMDELMDKIITERAAKHIVHELSISLRGLEN 360 V++YV LEK++ AL + PND + LE +M+ MD +ITERAAKHIV+ELSISLR +EN Sbjct: 300 VNEYVTLEKQYNALKQTSPNDSSLTALELEMENKMDSVITERAAKHIVNELSISLRDIEN 359 Query: 361 TDECPENSYHALLCSRFFRQRRYNLSAAGRYKVSRKLRITERIYQKTLACDLHLKNGELL 420 T+EC E S+HALLC+RFFR +RYNLS AGRYKVSRKLR+TERIYQKTLACDL LK+G+LL Sbjct: 360 TEECHEVSFHALLCARFFRNKRYNLSNAGRYKVSRKLRLTERIYQKTLACDLFLKDGKLL 419 Query: 421 LKKGTLLVKEEIDKIKQAAQNNQIDFVQKIKLTTDGSAVNLSPESLLYESLDVYVNNDNF 480 LKKGTLL+KEEIDKIKQAA+NN+I FV K++LTTDG AV+L+ ESL YE++DVY+ NDN Sbjct: 420 LKKGTLLLKEEIDKIKQAAKNNEISFVNKMQLTTDGKAVDLAKESLFYETIDVYITNDNL 479 Query: 481 DVSVPVVGIHNDNDLNKAITLSDFIASISYVINIPSAIGKYDDIDHLGNKRVKLINELIS 540 VSVPV+GIHN+NDLNKA+TLSDFIASISYVIN+P IGKYDDIDHLGNKRVKLINELI+ Sbjct: 480 SVSVPVIGIHNENDLNKAMTLSDFIASISYVINLPYGIGKYDDIDHLGNKRVKLINELIT 539 Query: 541 SRLESGITRMERFLKEKLTIADGVNRGQQINEEGQVIEQAEKKELTIKSLINSKPIQIVI 600 ++LESG TRMERFLKEKLTIADGVNRGQQINEEGQVIEQ EKKELTIKSLINSKPIQIVI Sbjct: 540 AKLESGFTRMERFLKEKLTIADGVNRGQQINEEGQVIEQGEKKELTIKSLINSKPIQIVI 599 Query: 601 RDFFNTHQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIE 660 +DFFNTHQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIE Sbjct: 600 KDFFNTHQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIE 659 Query: 661 TPEGMNIGLIMSLASFAKIDENGFLMAPYRKIKNGVITDEVEYLTALREDEHIIAEISSL 720 TPEGMNIGLIMSLASFAKIDENGFLMAPYRKIK GVITDEVEYLTALREDEHIIAEISSL Sbjct: 660 TPEGMNIGLIMSLASFAKIDENGFLMAPYRKIKAGVITDEVEYLTALREDEHIIAEISSL 719 Query: 721 VNIDENNKILDKEIIGRYRSMQGLYDPSKIDYIDVAPHQVVSIGSSLIPFLENDDSARAL 780 VNI +NKILDKEIIGRYRSMQGLYDP KIDYIDVAPHQVVSIGSSLIPFLENDDSARAL Sbjct: 720 VNISNDNKILDKEIIGRYRSMQGLYDPLKIDYIDVAPHQVVSIGSSLIPFLENDDSARAL 779 Query: 781 MGTNMQRQAYPLIKPYAPVVGTGQEYKIARDSGLTMLAPCSGTVKYVDNSKITIESDSGE 840 MGTNMQRQAYPLIKPYAP VGTGQE+KIA DSGLTM +PCSG V YVDNSKI I SDS + Sbjct: 780 MGTNMQRQAYPLIKPYAPAVGTGQEHKIASDSGLTMSSPCSGVVSYVDNSKIIITSDSSK 839 Query: 841 QHTLDLIKFERSNQNTCYNHVPLVEKGQRVTKDEVIADGPAVNKSELSLGQNVLVAFTTW 900 + T++L+KFERSNQNTCYNH P+VE GQRV KDE+I DGPAVNKSEL+LGQNVLVAFTTW Sbjct: 840 KETVNLVKFERSNQNTCYNHKPIVEIGQRVNKDEIIVDGPAVNKSELALGQNVLVAFTTW 899 Query: 901 NGYNYEDAIVISERLVKDDVLTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDE 960 NGYNYEDAIVISERLVK+D+LTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDE Sbjct: 900 NGYNYEDAIVISERLVKEDILTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDE 959 Query: 961 NGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKLPHGGDGI 1020 NGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLK+ HGGDGI Sbjct: 960 NGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKVSHGGDGI 1019 Query: 1021 VSCVKRFSIANGNELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADMPH 1080 VS VKRFSIANG+ELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVP+ DMPH Sbjct: 1020 VSAVKRFSIANGDELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPIEDMPH 1079 Query: 1081 LEDGTPVDILLNPLGVPSRMNIGQIFEMHLGYAAHNLAKRMLISACFDDKKAQALSTEIN 1140 LEDGTPVDILLNPLGVPSRMNIGQIFE HLGYAAH LA R LIS+CFD KA+ + EIN Sbjct: 1080 LEDGTPVDILLNPLGVPSRMNIGQIFETHLGYAAHKLAVRSLISSCFDQNKAKEFAIEIN 1139 Query: 1141 QPQYKLDRLITGLKAQITNRGLKDEQAALAQLNNGDIALVLKEIGMSFDDLHFKVATPIF 1200 QPQ +++RLI GLK QI +R +K E+ AL +L+N DI+LVLKEIGMSFDDL +K+ATPIF Sbjct: 1140 QPQARVERLIKGLKNQINDRNIKSEKEALEKLDNSDISLVLKEIGMSFDDLIYKIATPIF 1199 Query: 1201 QGVNFQDLQDIMDEAGLKPAETHGKFKLIDGRTGLPFEKPISLGIMYIMKLNHMVDDKIH 1260 QGVNF DLQD+M EAGL P + GKFKLIDGR+G+PFE+PISLGIMY+MKLNHMVDDKIH Sbjct: 1200 QGVNFLDLQDVMQEAGLDPQKNQGKFKLIDGRSGMPFERPISLGIMYMMKLNHMVDDKIH 1259 Query: 1261 ARAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNKA 1320 ARAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRN+A Sbjct: 1260 ARAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNRA 1319 Query: 1321 YAAIVKGAAFPEPGIPESFKLLTKELQGLALSVSFIYDDNTQQDSNNVSILQADGEQDDL 1380 YAAIVKGAAFPEPGIPESFKLLTKELQGLALSVSFIYDDNTQQDSNNVSILQ+DGEQD+ Sbjct: 1320 YAAIVKGAAFPEPGIPESFKLLTKELQGLALSVSFIYDDNTQQDSNNVSILQSDGEQDEF 1379 Query: 1381 FNDFEFDTEGY 1391 FNDFEFDTEGY Sbjct: 1380 FNDFEFDTEGY 1390 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508256|ref|NP_110205.1| suggest reductase homologue [Mycoplasma pneumoniae M129] (166 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073012.1| hypothetical protein MG342 [Mycoplasma genitali... 253 7e-070 >ref|NP_073012.1| hypothetical protein MG342 [Mycoplasma genitalium G-37] Length = 168 Score = 253 bits (646), Expect = 7e-070, Method: Compositional matrix adjust. Identities = 119/163 (73%), Positives = 137/163 (84%) Query: 4 KPLILLLANSKNSINRKFAKALEQQLNAELIELVDYQVDFYCEDLEKDHFPEKIKSLVRK 63 K LIL+L+NS++SINRKFA L+ L+ ELIEL DYQVDFY DLE +FP+KIK+LVRK Sbjct: 6 KSLILMLSNSQHSINRKFANELKHSLSCELIELKDYQVDFYSVDLEATNFPDKIKTLVRK 65 Query: 64 LHDHKTLIFVTPEHNGFVPAFAKNTIDWMTRDTQYGKNQFLKELDGIICCVTPAAKSGGK 123 + +H LIFVTPEHNGF+PAFAKN IDWMTRD QYG+NQFLK L+G+ICCVTPA GGK Sbjct: 66 IKEHSNLIFVTPEHNGFIPAFAKNIIDWMTRDEQYGRNQFLKGLNGVICCVTPATAGGGK 125 Query: 124 TVLELLTKFFSFSGLNVKGAVLVNGYHDGFDFQPFITDVQKLI 166 TVLELL KF SFSGLNVKG VLVNGYH+ FDF+PFI V+KLI Sbjct: 126 TVLELLDKFLSFSGLNVKGTVLVNGYHENFDFKPFIEQVKKLI 168 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508257|ref|NP_110206.1| hypothetical protein MPN518 [Mycoplasma pneumoniae M129] (348 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073013.1| hypothetical protein MG343 [Mycoplasma genitali... 314 8e-088 >ref|NP_073013.1| hypothetical protein MG343 [Mycoplasma genitalium G-37] Length = 346 Score = 314 bits (805), Expect = 8e-088, Method: Compositional matrix adjust. Identities = 170/341 (49%), Positives = 225/341 (65%), Gaps = 1/341 (0%) Query: 6 INEQTLVNEQRLLAYDCFQNTNKVGLLSALEYLDFVNHLVKSNQIKYLLVPSASQTVYQH 65 IN+QTLVNEQRLLAYD FQN+NKVGLLS L+YLDFVN LV+S ++ YLLV S +YQ Sbjct: 5 INDQTLVNEQRLLAYDFFQNSNKVGLLSTLQYLDFVNFLVRSKKVNYLLVNKVSLPIYQK 64 Query: 66 VFFDHFRFLSFDNNLLSGFGLAIRLHKEAETVFMLVXXXXXXXXXXXXXXXAVKQFSGLK 125 ++FD+F FL FDNNL S FGLA+R + +TVF V +K F GLK Sbjct: 65 IYFDNFPFLGFDNNLWSAFGLALRNKSQNDTVFAFVEKTKNTDTEINKFLKILKTFKGLK 124 Query: 126 LVVLLVNSPFENKRTKLSYEIVKIIKKHGYQYKRYCRKNFEKKFFNTWNHQKRKQKTKNN 185 +V LL+NSP E KLS ++K IKK +++ Y ++F+ KFF ++K K+KNN Sbjct: 125 IVFLLINSPEEKTTIKLSDSLIKEIKKQKIKHEVYSLRSFQNKFFKLVRKLEKKHKSKNN 184 Query: 186 LFFVELNSQFAFGTSMANSNSFDLSFTSFKERFNTENNLDIDVHFNVPHKYLLKNLESIK 245 + FVELN F + T+ SN D SFTSF++RF E L I HF +PHKYLLKNLE+IK Sbjct: 185 VMFVELNGVFGYETNFEKSN-IDFSFTSFQDRFTIEKKLKITSHFILPHKYLLKNLENIK 243 Query: 246 HHLQIDNNTIWKQAFINFAGQLLLYFENLQVFAQEASTLQVNAIVIKQDAYFIVEVMKGY 305 H N IW+Q +F Q LL++ LQVF+ + L+V+A++ + + IVE+MKG+ Sbjct: 244 HPNFEQKNLIWQQTVKDFNQQFLLHYSKLQVFSNSPTKLKVDALIFDLEFHLIVEIMKGF 303 Query: 306 NYDNNCICLLEANKDQNVGLTTASTNTLIGDIKQYEPCFFI 346 N+D NCICLLE NK+QN L T S +T + DIK Y+ C+F+ Sbjct: 304 NFDENCICLLEGNKEQNPNLPTVSLDTKVADIKTYQGCYFL 344 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508258|ref|NP_110207.1| triacylglycerol lipase (lip) 3 [Mycoplasma pneumoniae M129] (272 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073014.1| lipase/esterase, putative [Mycoplasma genitaliu... 358 e-101 ref|NP_072996.1| lipase/esterase, putative [Mycoplasma genitaliu... 67 2e-013 >ref|NP_073014.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length = 273 Score = 358 bits (920), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/273 (64%), Positives = 208/273 (76%), Gaps = 1/273 (0%) Query: 1 MRDKVNINTVDISQLEVFFQPAKKPAKQTIVFAHGFSVHHSYFKSFSETLVDYDYYAPLW 60 M+ ++N +DIS+LEVFFQPAKK KQT+VFAHGFSV HSYF+SF +TL DYDYYAPLW Sbjct: 1 MKRFSDLNQIDISKLEVFFQPAKKTKKQTVVFAHGFSVFHSYFQSFYKTLTDYDYYAPLW 60 Query: 61 PGHNHHGFTDKELSPIHYAHLLVAWIEKQDLENIVLIGHSMGGAVASYALQFLKPQRVEK 120 PGHN +GF KELSPIHY LL A+IE +DLENIVLIGHSMG AV SYA+ L +RVEK Sbjct: 61 PGHNVNGFDYKELSPIHYGELLAAFIENKDLENIVLIGHSMGAAVCSYAMNLLNAKRVEK 120 Query: 121 LVLLAPLSYSNLLNYYXXXXX-XXXXXXXLSYFKRMFQPKFPDLQNDGQWQMELDKHTAM 179 L+LLAPLSY NLL Y+ ++ FK MFQ KF +L ++ W+ EL KH+ M Sbjct: 121 LILLAPLSYCNLLRYFKIKSSFKKDKAERMANFKAMFQTKFSNLTDENSWENELSKHSKM 180 Query: 180 CKKLTFQIFKELSRLNSAYKTITIPAFLLLAQHDDFMPTKATLNYFNRFLIKKGNLQSGV 239 KKL+ I KEL LN YK + +P FL+LAQ+D FMPTK TL+YFN++LIK NLQS V Sbjct: 181 AKKLSNNILKELPVLNKTYKNLKLPVFLVLAQNDLFMPTKLTLSYFNKYLIKNNNLQSSV 240 Query: 240 ILHSQHQMFNSKHESFCKAMHDILKHNKLSKIY 272 IL+S+HQMFNSK+ESFCKAM DIL HNKLSKIY Sbjct: 241 ILNSEHQMFNSKYESFCKAMDDILNHNKLSKIY 273 >ref|NP_072996.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length = 268 Score = 67.0 bits (162), Expect = 2e-013, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 33/224 (14%) Query: 19 FQPAKKPAKQTIVFAHGFSVHHSYFKSFSETLV-----DYDYYAPLWPGHNHHGFTDKE- 72 F+P K+ K +F HGF S + SFS + ++ +PGH + TD + Sbjct: 16 FKPKKR--KNVFIFLHGFG---SEYASFSRIFSLFKKKKWPFFTFNFPGHGDNESTDTDQ 70 Query: 73 LSPIHYAHLLVAWIEKQDLENIVLIGHSMGGAVASYALQFLKPQRVEKLVLLAPLSYSNL 132 L H+ L+ +I ++ L N++LIGHSMGGAVA + + P +++ L+L+AP++ ++ Sbjct: 71 LKLNHFVDLVCDFIVQKKLNNVILIGHSMGGAVAVLVNKVI-PLKIKALILVAPMNQTSF 129 Query: 133 LNYYXXXXXXXXXXXXLSYFKRMFQPKFPDLQNDGQWQMELDKHT--AMCKKLTFQ-IFK 189 ++FKR D + + L K A K+ TF+ ++ Sbjct: 130 --------SVNKKRILDTFFKRN-NSNHKDFVEHEEKRKSLLKIAINAFKKRTTFKTLYS 180 Query: 190 EL--------SRLNSAYKTI-TIPAFLLLAQHDDFMPTKATLNY 224 ++ L AY+ I P ++L +D PTKA+++Y Sbjct: 181 DMVQNAKYGNDSLERAYEMIGNKPTLVILGANDIVTPTKASVDY 224 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508259|ref|NP_110208.1| isoleucine-tRNA ligase [Mycoplasma pneumoniae M129] (861 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073015.1| isoleucyl-tRNA synthetase (ileS) [Mycoplasma ge... 1227 0.0 ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycoplasma genita... 149 1e-037 ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycoplasma genit... 79 2e-016 >ref|NP_073015.1| isoleucyl-tRNA synthetase (ileS) [Mycoplasma genitalium G-37] Length = 895 Score = 1227 bits (3175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 572/830 (68%), Positives = 691/830 (83%) Query: 1 MNLKKTLLMPQTAFEMQGKLTTKEQQFQAFWQSKRIYQKLHRQNKDKPQKILHDGPPYAN 60 M+LKKTLLMP+T+F MQ L+T E+ F FW+ K+++QKL +QNK K KILHDGPPYAN Sbjct: 1 MDLKKTLLMPKTSFAMQANLSTSEKNFHDFWKDKKVFQKLKKQNKGKQIKILHDGPPYAN 60 Query: 61 GNIHVGHALNKILKDFVLRSWNLQGFGTVFIPGWDCHGLPIEHAVSKKDPQHYASLSLSE 120 G+IHVGHALNKILKDF+LRSW +G+ VFIPGWDCHGLPIEHAVSKK+P Y++LS E Sbjct: 61 GSIHVGHALNKILKDFILRSWLYEGYDVVFIPGWDCHGLPIEHAVSKKNPSSYSNLSTVE 120 Query: 121 KRDLCKQFALSQIAIQKAQFQRLGLLNDFSKYYKTIDESFQQNELDLFLQAVKKDLIFQA 180 KR LC QFALSQIA+QK QFQRLGLLNDF Y TIDESFQ EL+LFLQA+KK LIFQ Sbjct: 121 KRKLCHQFALSQIAVQKEQFQRLGLLNDFQNCYYTIDESFQFKELELFLQAIKKGLIFQD 180 Query: 181 LKPTYWSPVSRTSLAEAEIEYKEVKTIGLYLTFTVVQSAVLNSGXXXXXXXXXXXXXXXN 240 LKPTYWSP+SRTSLAEAEIEYKEV +I LYLTF V +S L+ N Sbjct: 181 LKPTYWSPISRTSLAEAEIEYKEVNSIALYLTFKVSKSDFLDENANLLVWTTTPWTLPTN 240 Query: 241 QAIAVHPQFEYLLFTYNNEQYVVLASLFESLKTKFGWTDAIQVQTISGSQLQNTTYKHCL 300 QAIA+HP F+YLLF YN +++V+L LFE K WT+AI+++ GS L+N++Y HC Sbjct: 241 QAIAIHPDFDYLLFEYNQQKFVILEKLFEVFTNKLNWTNAIKLKKFKGSNLKNSSYSHCF 300 Query: 301 YDKVNPVLLGNHVLCNEGTGLVHTSPAYGLDDFYLCKQNKLNEALVSLDEKGVFNDTLND 360 Y+KV PVL+G HV+ NEGTG+VH+SPA+G+DDFYLC++NK+ E L+S+DEKGVFN+ LND Sbjct: 301 YNKVLPVLMGIHVVDNEGTGIVHSSPAFGIDDFYLCQKNKIKEVLISIDEKGVFNNLLND 360 Query: 361 PVLTGLFYLKANDVIIERLKQHHNFVFSESFLHREPHDWRSKTPVIYRASKQLFIKTKSI 420 L FYLKAND+II RLKQ+++F+FSE HREPHDWRSKTPVIYRASKQLFIKTKSI Sbjct: 361 KELENCFYLKANDLIINRLKQNNSFIFSEVISHREPHDWRSKTPVIYRASKQLFIKTKSI 420 Query: 421 QSKLKRQIKRVKFVNNKNKERLQEMLLQRAEWCISRQRVWGLPIPLIYADNQPLLDVTTI 480 + +LK+QI +V F+N+KN+ RL+EMLLQR EWCISRQRVWGLPIP++YA+N+PLLD +TI Sbjct: 421 KKQLKKQINQVNFLNSKNQLRLKEMLLQRDEWCISRQRVWGLPIPIVYANNKPLLDFSTI 480 Query: 481 KYTIQQLKKYGIDSWFEKDINFFLNPKKIQPGVEYKKETDTLEVWFDSGSTYNVLISNKL 540 +YTI+QLKK+GIDSWFEKD+ FL P K + V+Y KE DTL+VWFDSGS+YNVL NK Sbjct: 481 QYTIKQLKKHGIDSWFEKDVTCFLKPDKTKKWVKYHKEIDTLDVWFDSGSSYNVLEINKY 540 Query: 541 NFPADLYLEGSDQYRGWFNSSASCGIIQTDQLPFKSLISHGFTLDEHGNKMSKSLGNVVD 600 ADLY+EGSDQYRGWFNSS++CGIIQ D +PFKSL+SHGFTLDE+GNKMSKSLGN+VD Sbjct: 541 GSIADLYIEGSDQYRGWFNSSSNCGIIQNDLIPFKSLVSHGFTLDENGNKMSKSLGNIVD 600 Query: 601 PLKLCDQYGADILRLWVTNVDWQVDNRIGDNIIKQIVEQYRRIRNSLLRFILGNLNHFNF 660 PLK+CDQYGADILRLWV N DWQ+DN+IG NI+KQ+ EQYRRIRNSLLRFILGN+N FNF Sbjct: 601 PLKICDQYGADILRLWVANTDWQIDNKIGVNILKQVAEQYRRIRNSLLRFILGNINGFNF 660 Query: 661 GEMKDYRFALEDKIVIHKTNALVQELHQWLKQYNFLNCLKAINKFVLWLSGWYFEIIKDT 720 M DY+F+LEDKIVIHKTN+LV+++ ++L++YNFL CLK INKFVLWLS WYFEIIKDT Sbjct: 661 TSMDDYKFSLEDKIVIHKTNSLVEQIEKFLEKYNFLGCLKVINKFVLWLSSWYFEIIKDT 720 Query: 721 LYCDAKTNPNRVAKQAVLNYIFTQLIGFLNIFIPHTAEDAWQNYLLPKKPVSVNLFAGPA 780 LYCDAK NPNR+AKQAVLNYIFTQLI FLNIFIPHTAEDAW+NY KKP+SVNLF P Sbjct: 721 LYCDAKNNPNRLAKQAVLNYIFTQLISFLNIFIPHTAEDAWKNYSFNKKPISVNLFTKPT 780 Query: 781 MFKVANVKGLDRLHESFSAIKDRAYAAIEQARQNGVITKNNQVVLTLGVD 830 +FKVAN K L ++++F++IK+ A+ IE+ R+ G+I+KNNQ+ LT+G++ Sbjct: 781 VFKVANSKNLGNIYKTFTSIKNAAFKEIEKLRKEGLISKNNQIELTVGIN 830 >ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycoplasma genitalium G-37] Length = 837 Score = 149 bits (376), Expect = 1e-037, Method: Compositional matrix adjust. Identities = 166/727 (22%), Positives = 307/727 (42%), Gaps = 107/727 (14%) Query: 56 PPYANGNIHVGHALNKILKDFVLRSWNLQGFGTVFIPGWDCHGLPIE---HAVSKKDPQH 112 PP G +H+GHA + D ++R +QGF +IPG+D G+ + ++ K+ Q Sbjct: 45 PPNLTGTLHIGHAFEVSITDQIMRFKKMQGFSINWIPGFDHAGIATQTKYEKIALKENQK 104 Query: 113 YASLSLSEKRDLCKQFALSQIAIQKAQFQRLGLLNDFSKYYKTIDESFQQNELDLFLQAV 172 Y +K ++ +AL+Q I K Q + LG+ ++S+ T+ E + + F Sbjct: 105 YFDADDDKKSEMIMNWALNQSEIIKNQLKSLGVCLNWSETKFTLSEQANKIVNNCFKNLY 164 Query: 173 KKDLIFQALKPTYWSPVSRTSLAEAEIEYKEVKTIGLYLTFTVVQSAVLNSGXXXXXXXX 232 + I+QA W T+++ E+ K V Y+ + + +S Sbjct: 165 ENGFIYQAYTLVNWDTKLNTAISNIEVINKPVNQHLHYVVYKLAN----DSKQELIVATT 220 Query: 233 XXXXXXXNQAIAVHPQFEYLLFTYNNEQYVVLASLFESLKTKFGWTDAIQVQTISGSQLQ 292 + + V+P+ +++Y T F W + V ++G Q+ Sbjct: 221 RPETIFADVCLLVNPK---------DKRY-----------TNF-WNKLV-VNPLTGKQI- 257 Query: 293 NTTYKHCLYDKVNPVLLGNHVLCNEGTGLVHTSPAYGLDDFYLCKQNKLNEALVSLDEKG 352 PV+ ++V GTG++ +PA+ +D+ + + K + L +D G Sbjct: 258 -------------PVVTDSYVDIKFGTGILKCTPAHDFNDYEINTKYKF-DFLSCIDSNG 303 Query: 353 VFNDTLNDPVLTGLFYLKANDVIIERLKQHHNFVFSESFLHREPHDWRSKTPVIYRASKQ 412 + N N GL L+A + I++ L+++ V S RS T V SKQ Sbjct: 304 ILNQ--NASKFQGLSVLQARNKIVKWLEKNKLLVKSIPLTSNVGFSERSGTVVEPMLSKQ 361 Query: 413 LFIKTKSIQSKLKRQIKRVKFVNNKNKERLQEMLLQRAEWCISRQRVWGLPIPLIYADNQ 472 F+ ++ L + K F+ + +++ L + WCISRQ +WG IP+ Sbjct: 362 WFVDLPKLKDHLYLK-KYPDFIPKRFNKQVSNWLNKLKPWCISRQLIWGHKIPV------ 414 Query: 473 PLLDVTTIKYTIQQLKKYGIDSWFEKDINFFLNPKKIQPGVE-YKKETDTLEVWFDSGST 531 WFE + + +K ++ Y + D L+ WF S S Sbjct: 415 ----------------------WFENNTGEIVVGEKPSKNLQNYTRSKDVLDTWF-SSSL 451 Query: 532 YNVLISNKLNFPAD-------LYLEGSDQYRGWFNSSASCGIIQTDQLPFKSLISHGFTL 584 + ++ LN+ D L + G D W +T +LPFK+++ HG Sbjct: 452 WPLIC---LNWEQDDSFHETELLVTGYDILFFWVLRMLFNSFFETKKLPFKTVLIHGLVR 508 Query: 585 DEHGNKMSKSLGNVVDPLKLCDQYGADILRLWVTNVDWQVDNRIGDNII--KQIVEQYRR 642 DE KMSKSL N +DP+ L YGAD +RL++ + ++ GD++I +Q ++ Sbjct: 509 DEQNRKMSKSLNNGIDPVDLIRNYGADAVRLFLCS-----NHTPGDDLIFSEQKIKSAWN 563 Query: 643 IRNSL---LRFILGNLNHFNFGEMKDYRFALEDKIVIHKTNALVQELHQWLKQYNFLNCL 699 N L +F++ N D + +L + ++ K + ++Q++ + L ++ Sbjct: 564 FLNKLWNVTKFVIQLENDQEISYDLD-KLSLSETWILAKLDKVIQKITKLLDKFQLALAN 622 Query: 700 KAINKFVLWLSGWYFEIIKDTLYCDAKTNPNRVAKQA--VLNYIFTQLIGFLNIFIPHTA 757 + + KFV ++ +T K PN++ Q + + + L+I +P + Sbjct: 623 QILVKFV-------WDDFCNTFIEAIKKEPNQLKPQLFYTAKSVLSNIAILLSITVPFLS 675 Query: 758 EDAWQNY 764 E +Q + Sbjct: 676 ERIYQQF 682 >ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycoplasma genitalium G-37] Length = 792 Score = 79.0 bits (193), Expect = 2e-016, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 38/213 (17%) Query: 436 NKNKERLQEMLLQRAEWCISRQRVWGLPIPLIYADNQPLLDVTTIKYTIQQLKKYGIDSW 495 ++NK +L + R +W SRQR WG P P+I+ +N V + + L+ Y D Sbjct: 391 SQNKAKLTTVYKLR-DWIFSRQRYWGEPFPIIFDENNTPHLVEQLPVELPLLENYKPDGS 449 Query: 496 FEKDI---NFFLNPKKIQPGVEYKKETDTLEVWFDSGST-----YNVLISNKLNF----- 542 + ++N ++ + Y++ET+T+ W +GS Y +LI N NF Sbjct: 450 GNSPLMRNQAWVNI--VKDNIHYQRETNTMPQW--AGSCWYYLGYLMLIKNP-NFWPIDS 504 Query: 543 -----------PADLYLEGSDQY-------RGWFNSSASCGIIQTDQLPFKSLISHGFTL 584 P DLY+ G++ R W ++ T + PF+ LI+ G L Sbjct: 505 KEAKKLFDQYLPVDLYVGGAEHAVLHLLYARFWHKFLFDKKLVSTKE-PFQKLINQGMVL 563 Query: 585 DEHGNKMSKSLGNVVDPLKLCDQYGADILRLWV 617 G KMSKS GN ++P L D +GAD LRL++ Sbjct: 564 GPDGKKMSKSKGNTINPTPLVDSHGADALRLYL 596 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508260|ref|NP_110209.1| putative rRNA methylase [Mycoplasma pneumoniae M129] (166 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073016.1| rRNA methylase, putative [Mycoplasma genitalium... 288 2e-080 >ref|NP_073016.1| rRNA methylase, putative [Mycoplasma genitalium G-37] Length = 166 Score = 288 bits (737), Expect = 2e-080, Method: Compositional matrix adjust. Identities = 132/166 (79%), Positives = 145/166 (87%) Query: 1 MYKSAINIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQ 60 MYKS INIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDK+Q Sbjct: 1 MYKSVINIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQ 60 Query: 61 MFEHKSWEHFIETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLM 120 +FEHKSWEHF++ T NK IWLLTKSG TPDQI M +LYFVFGQETKGLP+T+M Sbjct: 61 LFEHKSWEHFLQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIM 120 Query: 121 EQYSQNQVRIPIWNPVRSINLSNTVACVLYEYAKQNHYFNLDKQCA 166 + + QNQ+RIPIWN VRSINL+N V C+LYEY+KQN Y NLDKQCA Sbjct: 121 DNFKQNQIRIPIWNSVRSINLANAVVCILYEYSKQNQYSNLDKQCA 166 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508261|ref|NP_110210.1| similar to methyltransferase [Mycoplasma pneumoniae M129] (210 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073017.1| hypothetical protein MG347 [Mycoplasma genitali... 238 4e-065 >ref|NP_073017.1| hypothetical protein MG347 [Mycoplasma genitalium G-37] Length = 210 Score = 238 bits (606), Expect = 4e-065, Method: Compositional matrix adjust. Identities = 113/197 (57%), Positives = 146/197 (74%) Query: 1 MRLRKVKDALVRVQDSPYFSNPEQLSTIESESLFVEIGCGKSWFLSQQAQQNPKCFFVGI 60 MRLRKVK+AL+++ SPYF + ++ + + L +E+GCGK FL ++AQ+N F+GI Sbjct: 1 MRLRKVKNALLKINQSPYFYSKDKFAKFTKKQLVLELGCGKGTFLIKEAQKNNNFLFIGI 60 Query: 61 EREPTIVLKAINKVNRLEVKPRNLLITCLDANQLTEYLKPQSISKIFINFPDPWPKKRHT 120 EREPTIVLKAINK+N+L+ N+L+ C DA QL +Y + +S+ KIFINFPDPWPKKRH Sbjct: 61 EREPTIVLKAINKINKLDFNLENILLLCTDAKQLDDYFQAESVQKIFINFPDPWPKKRHI 120 Query: 121 LRRLTAPHFLKQFHQLLKKQGLIEFKTDNDQLFEFTLEVLQKTVAHFKIIEQTTDLHNSP 180 RRLT+P FLK F LL K GLIEFKTDND+LFE+TL LQ+ F+II Q TDL+NS Sbjct: 121 QRRLTSPDFLKLFWNLLVKNGLIEFKTDNDKLFEYTLTTLQENSQIFEIIHQITDLNNSE 180 Query: 181 LTSTNIMTEYEQRFVSL 197 + N +TEYEQRF+ L Sbjct: 181 FSFQNSITEYEQRFMEL 197 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508262|ref|NP_110211.1| probably membrane component, similar to STARP antigen [Mycoplasma pneumoniae M129] (305 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073018.1| lipoprotein, putative [Mycoplasma genitalium G-37] 330 9e-093 >ref|NP_073018.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 322 Score = 330 bits (847), Expect = 9e-093, Method: Compositional matrix adjust. Identities = 174/294 (59%), Positives = 205/294 (69%), Gaps = 21/294 (7%) Query: 32 NIDKPNVFRTLSQQSVENKVDYSKLPKENKTVRNLVFGTAEYNDGNYVLVVTTETDSSQI 91 NID+ + FR LS +SVE Y++LP + T RNLVFGT YNDGNYV+V+ TETDSSQI Sbjct: 30 NIDQ-SFFRELSVESVEKNTAYNQLPVNSTTFRNLVFGTRSYNDGNYVVVIATETDSSQI 88 Query: 92 NFLNGSNNQAVSTENWAGDLGTTVKQVQNRYSTYPKGVKFLIWNDIDPNPVKWNPFARYP 151 NFLNGS NQ S+ +W G LGTT++QVQNRYSTYP GVKFLIWNDI P VKWNP+AR+P Sbjct: 89 NFLNGSTNQGTSSLSWGGTLGTTIRQVQNRYSTYPNGVKFLIWNDIAPGSVKWNPYARFP 148 Query: 152 VIASDNELAKQTDKDNSDKLRRNDESAIQYREIVTFIQTVYSGSVNNLINQSNVHAQTVG 211 V+ NELA Q DKDNS+KLRR+D SA++YREIV FIQ Y G+V NLINQSNVHAQTVG Sbjct: 149 VVDRKNELASQEDKDNSNKLRRSDASAVRYREIVDFIQRTYGGNVANLINQSNVHAQTVG 208 Query: 212 TDVTKAIVIAFRKNNLDQISAHFYNPDNSNGSNAPGSNQPNQ------------------ 253 DVTKAIVIAFRK+NL++I A+FY DNS NAPGS Q + Sbjct: 209 NDVTKAIVIAFRKDNLNKIRANFYGLDNSTNPNAPGSGQGDSTPPASSGEGGGSDGSSGG 268 Query: 254 --DSGNNXXXXXXXXXXXXXXXXXXXXXFGVKRHAVQVSINFLNFLDSVYTPLN 305 SGN +G+K+HAV+VS++FLNFLDSVYTPLN Sbjct: 269 DSSSGNGQNTTPTSPQSSQPAVQRSQKSYGIKQHAVRVSVDFLNFLDSVYTPLN 322 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508263|ref|NP_110212.1| hypothetical protein MPN524 [Mycoplasma pneumoniae M129] (168 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508264|ref|NP_110213.1| hypothetical protein MPN525 [Mycoplasma pneumoniae M129] (413 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073019.1| hypothetical protein MG349 [Mycoplasma genitali... 487 e-140 >ref|NP_073019.1| hypothetical protein MG349 [Mycoplasma genitalium G-37] Length = 404 Score = 487 bits (1253), Expect = e-140, Method: Compositional matrix adjust. Identities = 234/368 (63%), Positives = 290/368 (78%), Gaps = 1/368 (0%) Query: 1 MQPNYYRVIKKATSFSGLDMISHAYGQIAGVEVVGFYLWLITEANAQAFNSEIRTPISRL 60 MQPNYYRVIKKATSFSGL+MISHAYGQIAGVEVVGFYLWLITEAN QAFNSEIRTPISRL Sbjct: 15 MQPNYYRVIKKATSFSGLEMISHAYGQIAGVEVVGFYLWLITEANIQAFNSEIRTPISRL 74 Query: 61 QNAFNTTGTKNVNVPDWIYKTIGKLESLGLVRTFFSQEKSEMTFWIVEPLGWKEFNQKKH 120 QNAFN K V +WIYKTI KLESLGLVRTFFS ++SE+TF I++PL WKEF Q K Sbjct: 75 QNAFNPFEIKKNQVSEWIYKTISKLESLGLVRTFFSPKRSEITFCIIDPLDWKEFKQNKQ 134 Query: 121 FKEKLIESMGKLEYDRNCLSFEQIDNIQFDNALEITANFEANFTSKQDCLSFSFDFEAFH 180 KEKL+E+MGK+EYDRNCL+F+QIDN+QFDNALEI+ANFE NFT+ Q + FSF+FE H Sbjct: 135 LKEKLVEAMGKVEYDRNCLAFDQIDNLQFDNALEISANFEVNFTANQSDVWFSFNFEELH 194 Query: 181 KQLVKQNLFVSFNQKTKAVINGYFEKYQITLEGILECVI-PSVVNXXXXXXXXXXXXXXX 239 K+LVK L +S ++K K +INGYFEKY+++L+ I +C+I S Sbjct: 195 KELVKNKLLISLDEKAKTLINGYFEKYKLSLQQITDCIINSSTQENELDFQKLEMMFFQI 254 Query: 240 XXNNTAPIVDTVINDRNFFYDNQNLATETKDAISRCHLEYNAEKYLFLLYGKVENEQLDL 299 N+TAPI++TV N+++FFY N+ L TK AI+ CH+ +N+EKYLFLLYGK++ QL L Sbjct: 255 VKNDTAPILETVSNNKDFFYKNEILDESTKKAITDCHVNFNSEKYLFLLYGKIDESQLQL 314 Query: 300 IRRLRQEFGIADKVINLIVDFSFWKNNSMWREQYILKIAESVERYRSHNNYQATLDNFIR 359 +R+LR ++ + DKVINL++DFSFWKNN MWRE+YILKIA+S++ S N+Y+ TL+NFIR Sbjct: 315 VRQLRSDYQLLDKVINLVLDFSFWKNNGMWREKYILKIAQSIKINNSQNSYEKTLNNFIR 374 Query: 360 ASSLAKKQ 367 A +L KK Sbjct: 375 ALTLNKKH 382 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508265|ref|NP_110214.1| hypothetical protein MPN526 [Mycoplasma pneumoniae M129] (328 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073020.1| hypothetical protein MG350 [Mycoplasma genitali... 258 8e-071 >ref|NP_073020.1| hypothetical protein MG350 [Mycoplasma genitalium G-37] Length = 311 Score = 258 bits (658), Expect = 8e-071, Method: Compositional matrix adjust. Identities = 138/291 (47%), Positives = 183/291 (62%), Gaps = 16/291 (5%) Query: 43 FKKRFKYLKLTKREVIEKESRELLLQAFRDFENCEKIKGNHCPNKGNAHLNIFREPPFW- 101 FKK F YLKLT++E+ + + + LL A+ F+ C KIK C NKG+ HL RE W Sbjct: 14 FKKHFAYLKLTEKELNDPKIQTLLEVAWNHFDQCRKIKERRCSNKGDIHLQAVREWLPWE 73 Query: 102 ----------TKSNKKV-----LGKLIGIKMSCAKSIDKEDIFKLRYSNFIIYKPNWFKY 146 TK +V +G ++ ++ C K ++K + F L Y FI+ KPNWFKY Sbjct: 74 FNANQLKKNSTKETTQVSENEFMGNVMLMQTICPKLVNKANWFDLTYERFIVTKPNWFKY 133 Query: 147 ADEFPQINQLPINKFQEESFEEIRNDLSELYENEKNHKENISFFNLQKVNFNHEGAKLLL 206 D P I LP+ + SF +S L+E EK K+ I FFNLQK N N+ A +L Sbjct: 134 MDLIPMIQNLPVTPSDKNSFGYAYKKISNLFETEKKTKKRIFFFNLQKNNINNMAACMLT 193 Query: 207 CDFVERGVKTALLYCEEFVSRFDRAYWKVDDYLDLINEANVIIFVSLGEESFVSKNYILF 266 C+ ++ +K AL+YCEEFVSR+D++YWKVDD L+L++EA VIIF+ LG+ESF +KNYILF Sbjct: 194 CEIAKKNIKVALIYCEEFVSRYDKSYWKVDDDLNLLDEAKVIIFIGLGQESFHNKNYILF 253 Query: 267 LTRLFDIINSKRKDVYFFSTEYNEKNGLIQAFQKSIHFKAKWVNSFFEQLN 317 +TRLF KRKDV+FFST Y++ NGLIQ F+ I A WV FFEQLN Sbjct: 254 MTRLFINCFLKRKDVFFFSTTYSDGNGLIQTFKNQIISSANWVKHFFEQLN 304 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508266|ref|NP_110215.1| putative membrane integrated oxidoreductase [Mycoplasma pneumoniae M129] (225 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073021.1| hypothetical protein MG350.1 [Mycoplasma genita... 226 2e-061 >ref|NP_073021.1| hypothetical protein MG350.1 [Mycoplasma genitalium G-37] Length = 224 Score = 226 bits (575), Expect = 2e-061, Method: Compositional matrix adjust. Identities = 114/221 (51%), Positives = 143/221 (64%) Query: 1 MNGARIAFWPKKEQHQLFNXXXXXXXXXXXXXXXXVSHFISIPFLSALKLTIDISSVFLI 60 MNG ++ F PKK HQLFN +S FISIPF S LKLT DIS VFL+ Sbjct: 1 MNGNKLVFLPKKSYHQLFNITFSAMMLALAIITSLISEFISIPFFSQLKLTFDISVVFLV 60 Query: 61 ACAFFVSYSWALVITVALSLCSFIWDGNNWIGILTLTIANFAIVSFTRLYFHIFAQIKLR 120 ACAFFVS W+L IT+A +L SF W+ NN IG+LT+T+AN + + FTRLYF +F++ + Sbjct: 61 ACAFFVSLGWSLTITLASALTSFFWNTNNVIGVLTVTLANLSTILFTRLYFCLFSKRRFC 120 Query: 121 WLWVFSXXXXXXXXXXXXXXXXXXXXXYWYWFGYVPTANFVEVAKIYNKTPYFHFFLFGV 180 W++VF +WY+FGYV T NF+ VA+ YNK FHFF FG+ Sbjct: 121 WIFVFLFTTLSNALLLTTLNGILITPLFWYYFGYVQTPNFLIVAEQYNKNTDFHFFFFGI 180 Query: 181 PNYWGGIFALYSLFNVIKFTLVSLIGVPVMRAFQKFYWKKA 221 NYW GIF LYS FN++KF LVS GVP+MR+FQKFYWK+A Sbjct: 181 NNYWLGIFCLYSFFNLVKFGLVSCFGVPIMRSFQKFYWKRA 221 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508267|ref|NP_110216.1| inorganic pyrophosphatase [Mycoplasma pneumoniae M129] (184 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073022.1| inorganic pyrophosphatase (ppa) [Mycoplasma gen... 318 2e-089 >ref|NP_073022.1| inorganic pyrophosphatase (ppa) [Mycoplasma genitalium G-37] Length = 184 Score = 318 bits (816), Expect = 2e-089, Method: Compositional matrix adjust. Identities = 151/184 (82%), Positives = 167/184 (90%) Query: 1 MDKFLIDVTVEIPKSSKIKYEYDRKTSQIRVDRILFGSESYPQNYGFIANTLDWDGDELD 60 MDKFLIDV VEIPK+SKIKYEYDR+T QIRVDRILFGSESYPQNYGFI NTLDWDGDELD Sbjct: 1 MDKFLIDVIVEIPKNSKIKYEYDRQTGQIRVDRILFGSESYPQNYGFIKNTLDWDGDELD 60 Query: 61 CFIFADQAFLPGVVVPTRIVGALEMVDDGELDTKLLGVIDCDPRYKEINSVNDLPKHRVD 120 CFIFADQ FLP VVPTRIVGALEM+DDGE+DTKLLGVIDCDPRYKEIN ++DLPKHR++ Sbjct: 61 CFIFADQPFLPATVVPTRIVGALEMIDDGEIDTKLLGVIDCDPRYKEINQISDLPKHRIE 120 Query: 121 EIIGFLKTYKLLQKKEVIIKGVQSLEWAKKEYQVCVDLMKQYGKLPKDEFIAKMQKLHPE 180 EI+ FLKTYKLLQKK VIIKG++ + WAKKEY++C+ LMK YG L KD+FI KMQ LHPE Sbjct: 121 EILIFLKTYKLLQKKTVIIKGLKDVCWAKKEYEICLQLMKDYGHLSKDQFIQKMQILHPE 180 Query: 181 HYQK 184 HYQK Sbjct: 181 HYQK 184 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508268|ref|NP_110218.1| bacterial histone like protein [Mycoplasma pneumoniae M129] (109 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073024.1| hypothetical protein MG353 [Mycoplasma genitali... 185 1e-049 >ref|NP_073024.1| hypothetical protein MG353 [Mycoplasma genitalium G-37] Length = 109 Score = 185 bits (469), Expect = 1e-049, Method: Compositional matrix adjust. Identities = 100/109 (91%), Positives = 106/109 (97%) Query: 1 MEKTTTSSKPLSRSEINKIIAVATGVKEAKIKEIFKYLNTLLLNELVSRSVCILPENLGK 60 MEKT+ +SKPLSRSEINKIIAVATG+KE KIKEIFKYLNTLLLNELVSRSVCILPENLGK Sbjct: 1 MEKTSNTSKPLSRSEINKIIAVATGIKEKKIKEIFKYLNTLLLNELVSRSVCILPENLGK 60 Query: 61 LRITIRNARIQKDMKTGEMKHIPPKPLVRYSPSKTIKETAAKVRWKYAD 109 LRITIRNAR QKDM+TGE++HIPPKPLVRYSPSKTIKETAAKVRWKYAD Sbjct: 61 LRITIRNARYQKDMQTGEIRHIPPKPLVRYSPSKTIKETAAKVRWKYAD 109 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508269|ref|NP_110219.1| hypothetical protein MPN530 [Mycoplasma pneumoniae M129] (136 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073025.1| hypothetical protein MG354 [Mycoplasma genitali... 200 6e-054 >ref|NP_073025.1| hypothetical protein MG354 [Mycoplasma genitalium G-37] Length = 137 Score = 200 bits (508), Expect = 6e-054, Method: Compositional matrix adjust. Identities = 94/137 (68%), Positives = 116/137 (84%), Gaps = 1/137 (0%) Query: 1 MEPNNLKEELVSVFEKACSSHKERLDFICSVRESDTFSNVDVPLAPIKTIIEIAKNEENQ 60 ME NN+KE+L+S F +ACS+H+ERLDFICS RESDTFS+VDVPL PIK IIEI K+E Q Sbjct: 1 MEQNNIKEQLISFFNQACSTHQERLDFICSTRESDTFSSVDVPLEPIKNIIEITKDENQQ 60 Query: 61 TEILKLAIENIKTLSTVG-SGQYIASHFSTHNEVAIIFCISYFLYHFNFLHDENKKQLLK 119 EI K+A+ NIKTLS+VG +GQY+AS FST++E AIIFC+ YFLYHF FL D NKKQ++K Sbjct: 61 IEITKIAVNNIKTLSSVGATGQYMASFFSTNSEPAIIFCVIYFLYHFGFLKDNNKKQIIK 120 Query: 120 RAFEAVAEKIADYLNEN 136 +A+E +A+ IADYLNEN Sbjct: 121 KAYETIADNIADYLNEN 137 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508270|ref|NP_110220.1| ATP-dependent protease binding subunit ClpB [Mycoplasma pneumoniae M129] (715 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073026.1| ATP-dependent Clp protease, ATPase subunit (clp... 1147 0.0 >ref|NP_073026.1| ATP-dependent Clp protease, ATPase subunit (clpB) [Mycoplasma genitalium G-37] Length = 714 Score = 1147 bits (2967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/711 (79%), Positives = 630/711 (88%) Query: 1 MDFSFTPTPDKRDFLKEMGRSINDEVLKNKVDPIIGRDNEIRRLIEILSRKNKNNPVLIG 60 M+ +FTP + R+FL+E+GR+INDEVLKNKVDPIIGRDNEIRRLIEILSRK+KNNPVLIG Sbjct: 1 MNINFTPAGENRNFLQEIGRNINDEVLKNKVDPIIGRDNEIRRLIEILSRKSKNNPVLIG 60 Query: 61 EPGVGKTAIVEGFVRRVVNNDVPLNLRDVEIYELSLSGLIAGTQYQGEFEKRVNGILKQV 120 EPGVGKTAIVEGFVRRVV+NDVPLNLRDVEIYELSLSGLIAGT++QGEFEKR+N ILKQV Sbjct: 61 EPGVGKTAIVEGFVRRVVSNDVPLNLRDVEIYELSLSGLIAGTKFQGEFEKRINTILKQV 120 Query: 121 KESNGKIILFIDEIHQIVGLGRNSSSGAMDIANILKPMLARGEIKVIGATTLKEYREYVE 180 KESNG+IILFIDEIHQIVGLGRNSSSGAMDIANILKPMLARGEIKVIGATTLKEYREY+E Sbjct: 121 KESNGRIILFIDEIHQIVGLGRNSSSGAMDIANILKPMLARGEIKVIGATTLKEYREYIE 180 Query: 181 KDGALERRFQKILVSEPSQQEALTIMRGLKTRWELFHNLTIFDSALVAAVEMSARYIPDR 240 KDGALERRFQKIL++EPS QEALTIMRGLKTRWELFHN+TIFDSALVAAVEMS RYI +R Sbjct: 181 KDGALERRFQKILINEPSSQEALTIMRGLKTRWELFHNITIFDSALVAAVEMSTRYINER 240 Query: 241 NLPDKAIDLIDEASAKIKTEMASEPVVIDTLKREIINLETEYAALKQDKENADNKKKQGH 300 NLPDKAIDLIDEA+AKIKTEM+SEPV ID+LKREIINLETEYAALKQDKEN + + K+ + Sbjct: 241 NLPDKAIDLIDEAAAKIKTEMSSEPVAIDSLKREIINLETEYAALKQDKENDNKQSKKEY 300 Query: 301 LDNLKQQLDELKKKRDSLTAEWKKEKTNFESINKLKKEIEDLQTRLELYQTEGNYEAASK 360 L+ LK+QLD LK+KRDSL EWKKEK +FE+INKLKKEIE+ QT+LE YQ+EGNYE+ASK Sbjct: 301 LEKLKKQLDALKQKRDSLINEWKKEKADFENINKLKKEIEEFQTKLETYQSEGNYESASK 360 Query: 361 ILYYDIPKLKNQLEQAQKKYVDSKHDLFKTXXXXXXXXXXXXQATGIPXXXXXXXXXXXX 420 ILY DIP+LK +LE AQ+KY SKHDLFKT Q TGIP Sbjct: 361 ILYSDIPRLKKELESAQQKYATSKHDLFKTEVSENEIAEVISQTTGIPLKKLLESEKDKL 420 Query: 421 XXXGDEIKKRVKGQDAAVETVVNTVMRGRVNLNDPNRPIGSFIFLGSTGVGKTELAKSLA 480 GDEIKKRVKGQD A++ VVNTV+RGRVN+NDPN+PIGSFIFLGSTGVGKTELAKSLA Sbjct: 421 LHLGDEIKKRVKGQDEAIDAVVNTVIRGRVNINDPNKPIGSFIFLGSTGVGKTELAKSLA 480 Query: 481 EVLFDNEKAMIRFDMSEYMEKHSVAKLIGAPPGYVGYEQSGLLTEAVRRKPYCVLLFDEI 540 EVLFDNEKA+IRFDMSEYMEKHSVAKLIGAPPGY+GYEQSGLLTEAVRRKPY VLLFDEI Sbjct: 481 EVLFDNEKALIRFDMSEYMEKHSVAKLIGAPPGYIGYEQSGLLTEAVRRKPYSVLLFDEI 540 Query: 541 EKAHPDVTNILLQVLDDGTLKDSQGRLVNFKNTMIIMTSNLGSNYIMENKRDLAMEALKK 600 EKAHPDVTN+LLQVLDDGTLKDSQGR+VNFKNT+IIMTSNLGSN+++E K+DLA+++LKK Sbjct: 541 EKAHPDVTNVLLQVLDDGTLKDSQGRVVNFKNTLIIMTSNLGSNFLLEGKKDLAIQSLKK 600 Query: 601 HFRAEFINRIDEIVFFSVLQKTTVLEIITNLLDQLNQRLAKQNLKFTFDPKLNEFIYKSS 660 HFR EFINRIDEIVFF+VL+K TVL II +LL QL++RL KQNL F FD L EFIYKSS Sbjct: 601 HFRPEFINRIDEIVFFNVLEKDTVLSIINSLLAQLSKRLNKQNLFFNFDSNLTEFIYKSS 660 Query: 661 FDEQFGARPIKRFIDRQIATLIAKQILEGIITKDVSYNVIVEKDKVAIVAN 711 FD+QFGARPIKRFID +ATLIAK IL+G I K V YN+ V KD + I N Sbjct: 661 FDQQFGARPIKRFIDHSVATLIAKYILQGKIKKGVGYNIAVVKDNITITQN 711 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508271|ref|NP_110221.1| similar to choline kinase [Mycoplasma pneumoniae M129] (282 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073027.1| hypothetical protein MG356 [Mycoplasma genitali... 434 e-124 >ref|NP_073027.1| hypothetical protein MG356 [Mycoplasma genitalium G-37] Length = 280 Score = 434 bits (1117), Expect = e-124, Method: Compositional matrix adjust. Identities = 207/277 (74%), Positives = 239/277 (86%) Query: 1 MNKGDAIDFLCEKLNLQPTAVAHVEQIHSGFTNFSFFTELKDGSKYQVRLARKDVPLNRR 60 M+ A+ FLCEKL + T + +EQIHSGFTNFSFF ELKD SK+Q+RL+RKDV L+RR Sbjct: 1 MDLKKAVAFLCEKLQVVETDIFKIEQIHSGFTNFSFFCELKDHSKFQIRLSRKDVILDRR 60 Query: 61 NEQIILDLVTPIFGNPFVYFDVTAGNAIKKWIEGKQPKRPTRLFLEQLVASLKKVHAVEW 120 NEQIIL LV P F NPFVYFDVT GNAIK+WIEG QPKR T LFL +LV SLKKVH+V+W Sbjct: 61 NEQIILQLVEPFFSNPFVYFDVTTGNAIKRWIEGTQPKRATDLFLCRLVESLKKVHSVDW 120 Query: 121 KQFANEIWIFDPLIYFNQTKLPDFYKKLYVELTDKHKAIPKTLCHHDSTFDNLVYTPKKQ 180 K FANE+ IFDPL+YF +TKL FYK+LY+ LT KH IPKTLCHHD+TFDNLV+TPKKQ Sbjct: 121 KPFANELLIFDPLVYFEKTKLSAFYKRLYLNLTKKHIDIPKTLCHHDATFDNLVWTPKKQ 180 Query: 181 VVLIDFEWSCVDNPYYEIANIIREELTIETANQIIDLYGSLDKKLVFETVIYVLLFAFQW 240 V+LIDFEWSCVDNPYYEIANIIREELTIETAN++ID+YG L +KLVFETVIYVLLFAFQW Sbjct: 181 VILIDFEWSCVDNPYYEIANIIREELTIETANKLIDIYGGLKRKLVFETVIYVLLFAFQW 240 Query: 241 TEIMPQTQQIIDYKKWVQKRLNYFLKALFPNTWKIAK 277 TEIMPQT+ I++Y+KWV+KRL YFLKALFP+ WK A+ Sbjct: 241 TEIMPQTEAILNYRKWVEKRLEYFLKALFPSIWKQAQ 277 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508272|ref|NP_110222.1| acetate kinase [Mycoplasma pneumoniae M129] (390 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073028.1| acetate kinase (ackA) [Mycoplasma genitalium G-37] 619 e-179 >ref|NP_073028.1| acetate kinase (ackA) [Mycoplasma genitalium G-37] Length = 393 Score = 619 bits (1596), Expect = e-179, Method: Compositional matrix adjust. Identities = 293/388 (75%), Positives = 339/388 (87%) Query: 1 MNDNKILVVNAGSSSIKFQLFDYHKKVLAKALCERIFVDGFFKLEFNEQKVEEKVAFPDH 60 M +KILVVNAGSSSIKFQLF+ K+VLAK LCERIF+DGFFKLEFN++K+EEKV F DH Sbjct: 1 MQSHKILVVNAGSSSIKFQLFNDKKQVLAKGLCERIFIDGFFKLEFNQKKIEEKVQFNDH 60 Query: 61 HAAVTHFLNTLKKHKIIQELSDIILVGHRVVQGANYFKDSVIVDAEALAKIKEFIKLAPL 120 + AV HFLN LKK+KII ELS+I L+GHRVVQGANYF D+V+VD +LAKIKEFIKLAPL Sbjct: 61 NLAVKHFLNALKKNKIITELSEIGLIGHRVVQGANYFTDAVLVDTHSLAKIKEFIKLAPL 120 Query: 121 HNKPEADVIEIFFKEVPSAKNVAVFDTTFHTTIPQENYLYAVPRSWEQKHLVRRYGFHGT 180 HNKPEADVIEIF KE+ +AKNVAVFDTTFHTTIP+ENYLYAVP +WE+ +LVRRYGFHGT Sbjct: 121 HNKPEADVIEIFLKEIKTAKNVAVFDTTFHTTIPRENYLYAVPENWEKNNLVRRYGFHGT 180 Query: 181 SYKFINNYLEKHLNKQNLNLIVCHLGNGASVCAIKNGKSFNTSMGFTPLEGLIMGTRSGD 240 SYK+IN +LEK NK+ LNLIVCHLGNGASVCAIK GKS NTSMGFTPLEGLIMGTRSGD Sbjct: 181 SYKYINEFLEKKFNKKPLNLIVCHLGNGASVCAIKQGKSLNTSMGFTPLEGLIMGTRSGD 240 Query: 241 LDPAIIGYVAEQENMSASDVVNALNKKSGMLALTGASDMRDVFAKPQENAVAIKMYVNRV 300 +DPAI+ Y+AEQ+ +S +DVVN LNKKSGM A+TG+SDMRD+F KP+ N +AIKMYVNRV Sbjct: 241 IDPAIVSYIAEQQKLSCNDVVNELNKKSGMFAITGSSDMRDIFDKPEINDIAIKMYVNRV 300 Query: 301 ADYIAKYLNQLEGNIDGLVFTGGIGENASDCVELFINAVKSLGFATDLKLFVKYGDSCVV 360 ADYIAKYLNQL G ID LVFTGG+GENAS CV+L I V SLGF T+ LF Y DS ++ Sbjct: 301 ADYIAKYLNQLSGEIDSLVFTGGVGENASYCVQLIIEKVASLGFKTNSNLFGNYQDSSLI 360 Query: 361 STPQSKYKIYRVRTNEELMIVEDSIRLT 388 ST +SKY+I+RVRTNEELMIVED++R++ Sbjct: 361 STNESKYQIFRVRTNEELMIVEDALRVS 388 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508273|ref|NP_110223.1| conserved hypothetical, RNA-expressed [Mycoplasma pneumoniae M129] (140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508274|ref|NP_110224.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae M129] (206 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073029.1| Holliday junction DNA helicase (ruvA) [Mycoplas... 278 2e-077 >ref|NP_073029.1| Holliday junction DNA helicase (ruvA) [Mycoplasma genitalium G-37] Length = 260 Score = 278 bits (712), Expect = 2e-077, Method: Compositional matrix adjust. Identities = 134/206 (65%), Positives = 167/206 (81%), Gaps = 1/206 (0%) Query: 1 MIASIFGKITFVGKRKIIVEANCISYWFNVKENHSFEKNLEKPRQVFCQIIKRMVTNQIL 60 MI SIFGK+TFVGKRKIIVE N ISYWFN KENH FEKNLEK +Q+FC IIK++V NQI+ Sbjct: 56 MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 115 Query: 61 EEGFAFNTLEEKEWFSKFIELNGIGSKTAXXXXXXXXEEMRDYIKNSNYHALTKLTGSNS 120 EE FAFNTLEEKEWF + IELNGIGSKTA EE++ YI +NY AL + G N+ Sbjct: 116 EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNNDLEEIKQYILENNYSALCGINGVNN 175 Query: 121 KVARALLALELYDRDDGGKRIKPNTAMANDYDEMFDTLKSLGYKPQDIQNALSKIEIKPN 180 K+ARALL+LE++++ + K IK +A+ YDE+F+TLKSLGYK Q+IQ+AL IE+KP+ Sbjct: 176 KIARALLSLEIFEKSENNKNIKG-VQVADGYDELFETLKSLGYKQQEIQDALKMIEVKPD 234 Query: 181 FDVSEVIAEVIKLMSFQNNEVTNKTA 206 FD+S+++AEVIKLMSF+NNE+TNKTA Sbjct: 235 FDISQLVAEVIKLMSFKNNEITNKTA 260 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508275|ref|NP_110225.1| Holliday junction DNA helicase RuvB [Mycoplasma pneumoniae M129] (307 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073030.1| Holliday junction DNA helicase (ruvB) [Mycoplas... 507 e-146 >ref|NP_073030.1| Holliday junction DNA helicase (ruvB) [Mycoplasma genitalium G-37] Length = 307 Score = 507 bits (1306), Expect = e-146, Method: Compositional matrix adjust. Identities = 255/306 (83%), Positives = 284/306 (92%) Query: 1 MKLQIKPPNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIAS 60 MKLQIKPPN F EFVGKQEII+QIQLSIKAS++NK QLDHILLYGPPGVGKTTLARLIA+ Sbjct: 1 MKLQIKPPNTFDEFVGKQEIISQIQLSIKASKLNKTQLDHILLYGPPGVGKTTLARLIAN 60 Query: 61 EMNTKLQIIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQV 120 E+ TKLQIIQGGHLQ+PSDFLNA+SLIKKGDVLF+DEIHAVAP+VMELM+PVMD F++QV Sbjct: 61 ELKTKLQIIQGGHLQKPSDFLNAISLIKKGDVLFIDEIHAVAPNVMELMYPVMDVFKIQV 120 Query: 121 LIGKDFNSKMVEMKVNPFTWIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYG 180 LIGKDFNSK+VEMKVNPFT IGATTQ GKIINPLEDRFG+ILNI+YYSN EIE++VSIYG Sbjct: 121 LIGKDFNSKIVEMKVNPFTLIGATTQLGKIINPLEDRFGVILNINYYSNAEIEKMVSIYG 180 Query: 181 EQMELELKPEEITQITQHSKQTPRIAIRIVKRLFEQKIVNKKIDLAALFKSLMIYKNGLQ 240 +QM+LEL EI+ IT+HSKQTPRIAIRIV+R+FEQKIVNKKIDL LFK+LMIYKNGLQ Sbjct: 181 KQMKLELNSNEISAITEHSKQTPRIAIRIVRRIFEQKIVNKKIDLEGLFKNLMIYKNGLQ 240 Query: 241 SIDVQYLKALNGQYEPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRTG 300 SIDVQYL+ LN Q EPQGIKSI SMLGID+ T+ENKIEPFLLRENMIQKTKKGRIIT +G Sbjct: 241 SIDVQYLEVLNRQNEPQGIKSISSMLGIDRHTIENKIEPFLLRENMIQKTKKGRIITNSG 300 Query: 301 RNYLTS 306 R YL + Sbjct: 301 REYLVN 306 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508276|ref|NP_110226.1| UV protection protein MucB [Mycoplasma pneumoniae M129] (412 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073031.1| hypothetical protein MG360 [Mycoplasma genitali... 506 e-145 >ref|NP_073031.1| hypothetical protein MG360 [Mycoplasma genitalium G-37] Length = 411 Score = 506 bits (1303), Expect = e-145, Method: Compositional matrix adjust. Identities = 244/411 (59%), Positives = 313/411 (76%) Query: 1 MIGTFTYLDPTIQADPNLLXXXXXXXXXXXSVEEIENPELKNQPLIVGNRTSRSVVSTCN 60 MI TFTY +P D NL+ SVEE+ENPEL NQPLIVGNR SRSVVSTCN Sbjct: 1 MINTFTYFEPEYLIDKNLIFLYFDFDAFFASVEELENPELVNQPLIVGNRFSRSVVSTCN 60 Query: 61 YLARSYGIKSGMPIAKALELCPQAIFATSHFRNYRKYSAKIFAMIAEQFNLEVHTLSIDE 120 Y+ARSYGI+SGM I KALELCP AIFA S+FRNYRK+S +IF++I F+L++ LS+DE Sbjct: 61 YVARSYGIRSGMSILKALELCPNAIFAHSNFRNYRKHSKRIFSVIESTFSLKIDVLSVDE 120 Query: 121 GFVCFRDLSPRKAFSLAKRIQRHVYEQLNFHISIGISNQFTLAKIFSNQAKPFGVKSCFS 180 G CF+++S +KAF +AK+I+ V++ L ISIGIS+ F +AKIFSNQAKPFG+KSC Sbjct: 121 GVACFQNISFKKAFLIAKKIKNFVFQNLRIKISIGISDHFLIAKIFSNQAKPFGIKSCSV 180 Query: 181 KEVKRKLWPLPIVELPGIGKRQLDNAFKNNFHKIGDLAKCKDVTLFKRVFGIAWESLHAV 240 K++K+KLWPLPI E+PGIG++ +D FKNNF+KI DLA C+D +L K+VFG WESL AV Sbjct: 181 KDIKKKLWPLPITEIPGIGEKHIDLVFKNNFYKINDLAVCEDASLLKKVFGNFWESLKAV 240 Query: 241 ALGETYTQSEQDVKSRSIAVSETLEYLNYSSNQLQQKLTSIFNELYARLQLSFQMCKGVV 300 +LG+ YT + VKSRS AVSETLE LNYS+NQL +KLT IF++L+ RLQLS Q+CKG+V Sbjct: 241 SLGKWYTDNNNQVKSRSFAVSETLEDLNYSNNQLNKKLTQIFDQLFIRLQLSSQVCKGIV 300 Query: 301 VQLKSNDFIVNSHSQSIKKYTADYQTLLVIVKKLFNRLLMGVGLNIRLIGVSFFGLKNNP 360 VQLKSNDFIVNSHS +KKY+ DY+ LL I K+LFNRLL+ N+RLIG+SFF LK Sbjct: 301 VQLKSNDFIVNSHSNKMKKYSNDYRKLLSITKRLFNRLLINTEKNVRLIGISFFDLKKID 360 Query: 361 SSSRPEGLLFYEYQQAKPKQQTAHFALDQMIYEINQSFGYEIIQRAKKLAA 411 + + LFY++ + + +LD++I++IN+SFG+EII+RA KL + Sbjct: 361 TDEGQKKSLFYQFIPKSISKLSEESSLDKLIFDINESFGFEIIKRANKLKS 411 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508277|ref|NP_110227.1| ribosomal protein L10 [Mycoplasma pneumoniae M129] (161 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073032.1| ribosomal protein L10 (rpl10) [Mycoplasma genit... 252 1e-069 >ref|NP_073032.1| ribosomal protein L10 (rpl10) [Mycoplasma genitalium G-37] Length = 162 Score = 252 bits (644), Expect = 1e-069, Method: Compositional matrix adjust. Identities = 120/161 (74%), Positives = 140/161 (86%) Query: 1 MEAKKDKAQQVADVSHLLSTSAGFVIFDYTSMSAIEATSIRKKLFKNGSKIKVIKNNILR 60 +++KK+K QQV D S+LLS S GFVIFDY+ MSA++AT +RKKLF GSKIK++KNNILR Sbjct: 2 VDSKKNKKQQVTDFSNLLSQSKGFVIFDYSGMSAVDATLMRKKLFNKGSKIKIVKNNILR 61 Query: 61 RALKAGKFEGIDETAIKGKLAVAVGVNEIVETLKAVDGVVKAKEAMNFVCGYFDNRAFNS 120 RALK FEG+DE+ IKGK+AVAVG+NEI+ETLK VD VVK KE M FVCG+FDNR FNS Sbjct: 62 RALKTSNFEGVDESVIKGKIAVAVGINEILETLKVVDSVVKEKELMKFVCGHFDNRIFNS 121 Query: 121 ADLEKIAKLPGRNELYGMFLSVLQAPLRKFLYALEAVKAAK 161 DL+KIAKLPGRNELYGMFLSVLQAPLRKFLYAL+AV+ AK Sbjct: 122 DDLQKIAKLPGRNELYGMFLSVLQAPLRKFLYALQAVRNAK 162 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508278|ref|NP_110228.1| ribosomal protein L7/L12 ('A' type) [Mycoplasma pneumoniae M129] (122 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073033.1| ribosomal protein L7/L12 (rpl7) [Mycoplasma gen... 190 4e-051 >ref|NP_073033.1| ribosomal protein L7/L12 (rpl7) [Mycoplasma genitalium G-37] Length = 122 Score = 190 bits (483), Expect = 4e-051, Method: Compositional matrix adjust. Identities = 100/122 (81%), Positives = 103/122 (84%) Query: 1 MAKLDKNQLIESLKEMTIMEIDEIIKAVEEAFXXXXXXXXXXXXXXXTQEAASEVTVKVT 60 M KLDK QLIESLKEMTI+EIDEIIKAVEEAF TQEAASEV+VKVT Sbjct: 1 MGKLDKKQLIESLKEMTIVEIDEIIKAVEEAFGVTATPIVAAGAAGATQEAASEVSVKVT 60 Query: 61 GYTDNAKLAVLKLYREIAGVGLMEAKTAVEKLPCVVKQDIKPEEAEELKKRFVEVGATVE 120 GY DNAKLAVLKLYREI GVGLMEAKTAVEKLPCVVKQDIKPEEAEELKKRFVEVGATVE Sbjct: 61 GYADNAKLAVLKLYREITGVGLMEAKTAVEKLPCVVKQDIKPEEAEELKKRFVEVGATVE 120 Query: 121 IK 122 +K Sbjct: 121 VK 122 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508279|ref|NP_110229.1| ribosomal protein L32 [Mycoplasma pneumoniae M129] (57 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073034.1| ribosomal protein L32 (rpL32) [Mycoplasma genit... 71 1e-015 >ref|NP_073034.1| ribosomal protein L32 (rpL32) [Mycoplasma genitalium G-37] Length = 57 Score = 71.2 bits (173), Expect = 1e-015, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 39/57 (68%) Query: 1 MAVQQXXXXXXXXXXXXXXXALTAQALSVCQKCGKKKLFHRVCSCGMYGDLRVKKAY 57 MAVQQ ALT Q LSVC+KCGKKKL HRVCSCGMYG+LRVKKA+ Sbjct: 1 MAVQQRRSSKHRRDKRRSHDALTLQTLSVCKKCGKKKLSHRVCSCGMYGELRVKKAH 57 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508280|ref|NP_110230.1| ribosomal protein S20 [Mycoplasma pneumoniae M129] (87 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073035.1| ribosomal protein S20 (rpsT) [Mycoplasma genita... 130 3e-033 >ref|NP_073035.1| ribosomal protein S20 (rpsT) [Mycoplasma genitalium G-37] Length = 88 Score = 130 bits (326), Expect = 3e-033, Method: Compositional matrix adjust. Identities = 67/87 (77%), Positives = 76/87 (87%) Query: 1 MANIKSNEKRLRQNIKRNLNNKGQKTKLKTNVKNFHKEINLDNLGNVYSQADRLARKGII 60 MANIKSNEKRLRQ+IKRNLNNKGQKTKLKTNVK F+KEINLDNL +VYSQADRLARKGII Sbjct: 1 MANIKSNEKRLRQDIKRNLNNKGQKTKLKTNVKKFNKEINLDNLSSVYSQADRLARKGII 60 Query: 61 STNRARRLKSRNVAVLNKTQVTAVEGK 87 S NRA+RLKS+N +L+K+ + K Sbjct: 61 SLNRAKRLKSKNAVILHKSNTNSTAKK 87 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508281|ref|NP_110231.1| hypothetical protein MPN542 [Mycoplasma pneumoniae M129] (218 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073036.1| hypothetical protein MG364 [Mycoplasma genitali... 254 7e-070 >ref|NP_073036.1| hypothetical protein MG364 [Mycoplasma genitalium G-37] Length = 224 Score = 254 bits (648), Expect = 7e-070, Method: Compositional matrix adjust. Identities = 119/157 (75%), Positives = 140/157 (89%), Gaps = 1/157 (0%) Query: 28 SKKKNSQKTEFGGEGGSRASKKDEVWKTVKQFLQEQNERGKEIIKTFVAKNPNPLHSRKD 87 SKKK +QK +F GEGG+R+S+KDEVWKT+KQFLQE+NERGKEIIKTFVAK PNPLHS+KD Sbjct: 27 SKKKGAQKNDFSGEGGNRSSRKDEVWKTIKQFLQEKNERGKEIIKTFVAKKPNPLHSKKD 86 Query: 88 RQFFNQEVQAYITAHNLSKTAAKRYRHEQLKLKQRELYCIYFITKDAKTSVFDEARIIEA 147 R+ FNQE+QAYIT++NL K+ AKRY++EQ +L QRELYCIYF+TKDAK++ D+ARIIEA Sbjct: 87 RKLFNQEIQAYITSNNLGKSEAKRYKNEQTRLMQRELYCIYFVTKDAKSTEVDDARIIEA 146 Query: 148 EVYQKPNKTGKGAPERLIRILGLKNFNDEMKWIQPLM 184 EVYQKP KT K PERLIRILGLKNF EM+WIQPLM Sbjct: 147 EVYQKPTKT-KSTPERLIRILGLKNFETEMQWIQPLM 182 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508282|ref|NP_110232.1| methionyl-tRNA formyltransferase [Mycoplasma pneumoniae M129] (311 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073037.1| methionyl-tRNA formyltransferase (fmt) [Mycopla... 432 e-123 >ref|NP_073037.1| methionyl-tRNA formyltransferase (fmt) [Mycoplasma genitalium G-37] Length = 311 Score = 432 bits (1112), Expect = e-123, Method: Compositional matrix adjust. Identities = 207/310 (66%), Positives = 250/310 (80%) Query: 1 MIKVVFFGTSTLSKCCLEAIFQDPEFVVCGVVTQPDKVNERNNKINFSAVKQFCIENNIP 60 M K+VFFGTSTLSK CLE +F D +F +C VVTQPDK+N RNNKI S VK FC+E NI Sbjct: 1 MFKIVFFGTSTLSKKCLEQLFYDNDFEICAVVTQPDKINHRNNKIVPSDVKSFCLEKNIT 60 Query: 61 CFQPEKNIQIKTELAQLQADIGVCVAFGQYIHNDIINLFPYKIANLHPSKLPLLRGGAPL 120 FQP+++I IK +L +L+ADIG+CV+FGQY+H DII+LFP K+ NLHPSKLPLLRGGAPL Sbjct: 61 FFQPKQSISIKADLEKLKADIGICVSFGQYLHQDIIDLFPNKVINLHPSKLPLLRGGAPL 120 Query: 121 HWTIINGFTTSSLSVIELVQKMDAGPIWKQKDFKVNPNWNTGDLFEYVQTHAPQFLIQCL 180 HWTIINGF S+LSVI+LV+KMDAGPIWKQ+DF VN +WNTGDL YV+ H+P FLI+C Sbjct: 121 HWTIINGFKKSALSVIQLVKKMDAGPIWKQQDFLVNNDWNTGDLSIYVEEHSPSFLIECT 180 Query: 181 KEIVSGKSQWKEQINPPTFGLNIKKEQERLDLNLEPKAFINWVKGLAPKPGGWLEFEGQN 240 KEI++ K +W EQI PTFGLNI+KEQE LDLN K+F+NWVKGLAPKPGGWL FEG+N Sbjct: 181 KEILNKKGKWFEQIGEPTFGLNIRKEQEHLDLNQIYKSFLNWVKGLAPKPGGWLSFEGKN 240 Query: 241 IKILQATYLGKMTSTTAVGQITKISKQGIEIALANDEIVLLQIIQIPGKRAMGVSEIING 300 IKI +A Y+ K +G+I IS++GI IAL ++EI+ ++ IQIPGKR M VSEIING Sbjct: 241 IKIFKAKYVSKSNYKHQLGEIVNISRKGINIALKSNEIISIEKIQIPGKRVMEVSEIING 300 Query: 301 KHPFAEGKFF 310 KHPF GK F Sbjct: 301 KHPFVVGKCF 310 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508283|ref|NP_110233.1| hypothetical protein MPN544 [Mycoplasma pneumoniae M129] (664 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073038.1| hypothetical protein MG366 [Mycoplasma genitali... 843 0.0 >ref|NP_073038.1| hypothetical protein MG366 [Mycoplasma genitalium G-37] Length = 667 Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/660 (62%), Positives = 520/660 (78%), Gaps = 5/660 (0%) Query: 1 MLTKAFFLKNFDRSKELIPLSYADVFGAASQLLKKHHKQVDTEIDVQEDLIEDPVFEIDI 60 M+TK+FFLKNFDRSKELIPLSY DVF A +Q LK + D +I ++E+LIEDPVFE+D+ Sbjct: 1 MITKSFFLKNFDRSKELIPLSYNDVFSAVNQFLKSYTDVNDIDI-IEENLIEDPVFELDV 59 Query: 61 LELLNEAPELLFDSKNPRVXXXXXXXXXXXXXXXSYFHLDNILDTDNLGLKATVTEKIQF 120 LELLNE P LL DSKNPRV YF+L DTD+L +V +K + Sbjct: 60 LELLNEDPMLLLDSKNPRVQEAKIIANKAKKNIKDYFNLPIFFDTDSLDKNVSVYQKAEL 119 Query: 121 TEKQIEAAVQNKKAAIIFKPVFTVNQCLIQPDAVVVHANGLCEFVVIKATTNTKRKFILE 180 TEK+I+ + +KK+AIIFKP+F + CLIQPDA++VH GLCEFVVIKATTNTKRK+ LE Sbjct: 120 TEKKIQEIITSKKSAIIFKPIFEIEDCLIQPDAIIVHEKGLCEFVVIKATTNTKRKYFLE 179 Query: 181 IIYDFLLFEKLGKYKLVNYYFCIVNYELKNKHNVSFFLNTEIXXXXXXXXXXXXEEQVLY 240 IIYDF+LF+K+GKYKL+NYYFC V YEL+NK+NVSFFLNTEI E+ + Sbjct: 180 IIYDFVLFKKIGKYKLLNYYFCTVKYELQNKNNVSFFLNTEIKTSKNSFSLSSKEKD-YF 238 Query: 241 GHLPFNDPKKIAYIHSKKSGGVNGFLLVKLVDNIIRSGVTNLEQIISFVFRELNAPSIRS 300 + PFN P+KIAYIH KKS GVNGFL+VKL+DN+I++ + +L +I FV +E+++ S+R+ Sbjct: 239 KNKPFNHPEKIAYIHKKKSNGVNGFLIVKLIDNLIKNNIVDLNKISDFVTKEIDSKSVRN 298 Query: 301 LKQIISEVAKVQLDFWNIIDDVKQHQELQDNQITFNYSDAFNSFWNNYLLRNLIKLVFAY 360 ++ +I AK+Q++FW+ I D+K++QEL+ NQI FNYS+ F+SFW+NYLLRNLIKLVFA+ Sbjct: 299 IQPLIKNAAKIQINFWDQIQDIKKYQELKINQIVFNYSENFDSFWSNYLLRNLIKLVFAH 358 Query: 361 KYSEIFRLSGKLAKWDEVVEAYKENKSVKIDGFLYELNQGKMKKTKNPATSQFNKIHFFL 420 KY+EIF+LSGKLA W ++ AYKENKS+ I+ L+ELNQ K K N +T NKI FFL Sbjct: 359 KYNEIFKLSGKLANWSQLTYAYKENKSITINQLLHELNQKKSKANFNNST---NKISFFL 415 Query: 421 RAWNDKKGIAVGNKFKSVWQKLKEKKVYFDFETISSAVRVIDKSLPFTQIVTQCSLIVDD 480 AWN +KG A+GNKFK+ W KLK+KKVYFDFETISS++R+I+ SLPF+QIVTQCSLIVD Sbjct: 416 EAWNSEKGFAIGNKFKNTWNKLKKKKVYFDFETISSSIRIINNSLPFSQIVTQCSLIVDK 475 Query: 481 NTESDKSKLVCQNLIFDPLTIGIEDFKTVVDALYQKQCDQYSFVVYNKSFEKNRLLEMAT 540 N DK KL C+NLIFDPL I + DFK V+D+LYQ C YSFVV+NKSFEKNRLLEMAT Sbjct: 476 NEIDDKRKLNCENLIFDPLFISVNDFKKVIDSLYQNNCSDYSFVVFNKSFEKNRLLEMAT 535 Query: 541 FINEAPYQQRVQAIIENLFDLADIFGLENDCLAFKQLDGFSSIKKVLPMIDQRFLDASRT 600 INE Y+++V+AI++NLFDLADIF +EN+CLAFKQL+GFSSIKKVL +ID+ FL AS++ Sbjct: 536 LINEQIYKEKVKAIVDNLFDLADIFTIENNCLAFKQLNGFSSIKKVLTIIDESFLKASKS 595 Query: 601 VSYQSLKVQKGDVAQELTLARFLNCLDEQQWAQTALELKQYCENDVRAMIAIELFIKDFI 660 + YQ+LK+QKGDVAQE+ L+RFLNCL++ +W Q A ELK+YCENDVRAMI+I LFI+D I Sbjct: 596 IGYQNLKIQKGDVAQEVALSRFLNCLNKNEWNQVAFELKKYCENDVRAMISIVLFIQDLI 655 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508284|ref|NP_110234.1| ribonuclease III [Mycoplasma pneumoniae M129] (282 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073039.1| ribonuclease III (rnc) [Mycoplasma genitalium G... 387 e-110 >ref|NP_073039.1| ribonuclease III (rnc) [Mycoplasma genitalium G-37] Length = 262 Score = 387 bits (994), Expect = e-110, Method: Compositional matrix adjust. Identities = 184/261 (70%), Positives = 223/261 (85%) Query: 1 MKNKKDKTQKPKVIDEKFVAFFKSLNIEPQNWQFYEDAFVHSSYVNENEDARASYDRLEF 60 MKNK K + K+ D+K F K+L+I P NW+F+E AF+H+SY+NE+ED SYDRLEF Sbjct: 1 MKNKVLKLKNNKIFDKKLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEF 60 Query: 61 LGDALIDFIVAKKLFELYPNYNEGMLTRTKIEIVKGENLNRIGKELNFGNFIKLGKGMPY 120 LGDALIDF+VAKKLFELYP YNEG+LTRTKIEIVKGENLNRIG EL G+F+KL G Sbjct: 61 LGDALIDFVVAKKLFELYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAEL 120 Query: 121 TETLFGDVLEALVAAIYEDLGIEKANQFVEEHIFKKTYSEILKYNFFSLFQEQKLPEPRV 180 TE GDVLEALV AIYED+G++KA +FVE++IF++T+SEILKY+FFSLFQEQKLPEPRV Sbjct: 121 TENTVGDVLEALVGAIYEDMGMKKATEFVEKYIFERTFSEILKYDFFSLFQEQKLPEPRV 180 Query: 181 RVSLTSNNLVLSIIELNGDIIWSQAVPNSKHYDDKSVLEHNAMSAFTQFLKSGKGINFFS 240 RVSLTSNNLVLSIIEL+GDIIWSQA+PN+K+YDDKSVLEHNAM++FT FLKS KG +FFS Sbjct: 181 RVSLTSNNLVLSIIELDGDIIWSQAIPNNKNYDDKSVLEHNAMASFTSFLKSSKGSHFFS 240 Query: 241 DIKNKLDSQKPMRALTVRPKK 261 D+K K+++QK + L ++PKK Sbjct: 241 DLKEKIENQKMCKKLAIKPKK 261 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508285|ref|NP_110235.1| fatty acid/phospholipid synthesis protein PlsX [Mycoplasma pneumoniae M129] (328 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073040.1| fatty acid/phospholipid synthesis protein (plsX... 551 e-159 >ref|NP_073040.1| fatty acid/phospholipid synthesis protein (plsX) [Mycoplasma genitalium G-37] Length = 328 Score = 551 bits (1421), Expect = e-159, Method: Compositional matrix adjust. Identities = 270/328 (82%), Positives = 303/328 (92%) Query: 1 MAFRLAVDCLGFENHPREAIDAVLEYWSYHQELEFILVGDEKTFDGLDYLPKNITKQLAS 60 MAFR AVDCLGFEN P EAI+AVL+YWS+HQ+L FIL+GDEK FDGLD LPKNITK+LA+ Sbjct: 1 MAFRFAVDCLGFENKPSEAIEAVLKYWSFHQDLNFILIGDEKAFDGLDILPKNITKKLAN 60 Query: 61 SCIDMTDTPLTARRKVNNSMQKAINLVRDGAADVVISAGSSAVYASLTYDGFGKIHKDVK 120 S I+MTDTPL+ARRKVN+SMQ AINLVR+G ADVVISAGSSAVYASLT D FGKI+K+ K Sbjct: 61 SFIEMTDTPLSARRKVNSSMQIAINLVREGNADVVISAGSSAVYASLTNDAFGKINKNTK 120 Query: 121 SAFMSYVPTANNDWFYFLDVGANKNFTGKELYFLGLMADIFVKKTTNKISPRIALLNIGT 180 SAFMSYVPT NN+WFYFLDVGANK FTGKELYFLGLMADIFVKKTT K +P+I LLNIGT Sbjct: 121 SAFMSYVPTDNNNWFYFLDVGANKYFTGKELYFLGLMADIFVKKTTTKKTPKIGLLNIGT 180 Query: 181 EIHKGFDYHQEGYQLLNEDKHLNFTGFIEPRFLLDGVCDILVADGYSGNLVLKSMEGTFK 240 E +KGFDYHQE ++LL DK+LNF GF+E RFLLDG+CDIL+ADGYSGNLVLK+MEGTFK Sbjct: 181 EENKGFDYHQEAFKLLKADKNLNFLGFVESRFLLDGICDILIADGYSGNLVLKAMEGTFK 240 Query: 241 TIARLLKQGYKRNPLAGLFSLGILKRIAKRFDYKNNAGAVVIGLNKLALKTHGSADKQQF 300 TIAR+LK+GYKRNPLAGLFSLGI+K +AK+FDYKNNAGAVV+GLNKLALKTHGSADKQQF Sbjct: 241 TIARILKRGYKRNPLAGLFSLGIIKSVAKKFDYKNNAGAVVMGLNKLALKTHGSADKQQF 300 Query: 301 LSTIRLAHTSLKSDLINAIKSSLDNYEK 328 LSTIRLAH SLKSDLINAIK+SL+NYE+ Sbjct: 301 LSTIRLAHLSLKSDLINAIKTSLNNYEE 328 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508286|ref|NP_110236.1| dihydroacetone kinase [Mycoplasma pneumoniae M129] (558 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073041.1| hypothetical protein MG369 [Mycoplasma genitali... 839 0.0 >ref|NP_073041.1| hypothetical protein MG369 [Mycoplasma genitalium G-37] Length = 557 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/558 (73%), Positives = 465/558 (83%), Gaps = 1/558 (0%) Query: 1 MSTVNLSNFIDMLRLGCKNIANNFEYINQLNVFPVPDGDTGTNMKVTLSEAFKKLESEIS 60 MS+VNLS+FIDMLRLGC NIA N+EYINQLNVFPVPDGDTGTNMKVT++EA KKLE+E S Sbjct: 1 MSSVNLSSFIDMLRLGCNNIAKNYEYINQLNVFPVPDGDTGTNMKVTITEAIKKLENEKS 60 Query: 61 HIKSFSDLGKSFTRDLLLFSRGNSGVIFSQIMKGFFSDMISTKTATETELGIEDFATAFI 120 HIKSFS+LGK+FTRDLLLFSRGNSGVIFSQIMKGFFS++I KT+ +EL IED A AFI Sbjct: 61 HIKSFSELGKNFTRDLLLFSRGNSGVIFSQIMKGFFSNIIVNKTSNNSELSIEDVANAFI 120 Query: 121 KAEEVAYKNVSKPVEGTMLTVIRLISTDFKNQKNRAKTVQKLFEQVIKTAWQTVKKTPQM 180 A+EVAYKNVSKPVEGTMLTV RLIS +FK+QKNR KT++KLFEQ +K AWQ VKKTPQM Sbjct: 121 VAQEVAYKNVSKPVEGTMLTVARLISNEFKSQKNRPKTLEKLFEQAVKVAWQAVKKTPQM 180 Query: 181 LPVLKASGVVDSGAYGFACFLEGMLSFYGEKATLNDGKLTSAELSQMTISGEKHVTEEEF 240 LPVLKASGVVDSGAYGFACFLEGMLS+YG ++ L+D L++ E+ + E+H E+EF Sbjct: 181 LPVLKASGVVDSGAYGFACFLEGMLSYYGGESNLDDNTLSTIEI-KFNKFKEQHANEDEF 239 Query: 241 GYCTEYVLKLGMSVSQEVEKQKFNQKKFESKVSKIATSVVVASDKDNGFVKVHAHTEKPX 300 GYCTEYVL+LG+ ++Q VEKQKF+QKKFESKV++IA SVV+ASDKDNGFVKVHAHT KP Sbjct: 240 GYCTEYVLRLGLKINQTVEKQKFHQKKFESKVNRIANSVVIASDKDNGFVKVHAHTLKPH 299 Query: 301 XXXXXXXXXXXXXXVKIENMNLQVAKQKPAPVKRNIKPAIVVTVPTEAFADRIREDYDIQ 360 VKI+NMNLQV + +P KR +KPAIV TVPTEAFA+RIRED+DI Sbjct: 300 LLLEMGLNYGEFEFVKIDNMNLQVNNKNNSPTKRVLKPAIVATVPTEAFAERIREDHDIN 359 Query: 361 AILCTDDTGAPSVFSLLEAVKLTHSSNIIFLLHDKNYFLSANEALKQLKHQKISADCVMT 420 AILCTDDTGAPSVFSLLEAVKLT+SSN+IFLLHDKNYFLSANE +KQLKHQKI+AD V+T Sbjct: 360 AILCTDDTGAPSVFSLLEAVKLTNSSNVIFLLHDKNYFLSANETIKQLKHQKINADYVIT 419 Query: 421 TNPIESLAALTVFNSDLNIHTNVKTMRRFVKGFASATITQASKKYKENRIEVNKGDFIAV 480 NP+ES+AALTVFNSDL+IHTNVK M+RF+K FASATITQASK YKEN++ VNK DFIAV Sbjct: 420 ANPVESIAALTVFNSDLSIHTNVKAMKRFIKEFASATITQASKSYKENKVMVNKNDFIAV 479 Query: 481 ANNSICVSEKELVQCVFNTIDHLLKKVKKPEFLLAYYGKDITXXXXXXXXXXXXXXXXLF 540 N SI SE +L C F TID L KKVKKPEFLLAYYGKDIT LF Sbjct: 480 TNKSIIASESQLTDCFFKTIDILSKKVKKPEFLLAYYGKDITEQDAKKMQALVEKKYKLF 539 Query: 541 CEFSPGEQKVFSYILGIQ 558 CEFSPGEQKVFSYI+GIQ Sbjct: 540 CEFSPGEQKVFSYIIGIQ 557 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508287|ref|NP_110237.1| pseudouridine synthase [Mycoplasma pneumoniae M129] (326 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073042.1| hypothetical protein MG370 [Mycoplasma genitali... 416 e-118 ref|NP_072871.1| sfhB protein, putative [Mycoplasma genitalium G... 76 6e-016 >ref|NP_073042.1| hypothetical protein MG370 [Mycoplasma genitalium G-37] Length = 323 Score = 416 bits (1069), Expect = e-118, Method: Compositional matrix adjust. Identities = 197/318 (61%), Positives = 244/318 (76%) Query: 5 KFVVPKAVENVRIEKFCLKLLPNIKLSQFFKLLRLGKVLLNNTKAKLGQRVSSGDTIVFQ 64 KF+VPK EN RI++FCLK+LP IK S FFK LRLGKVLLN TK ++ R+ + D I F Sbjct: 6 KFLVPKESENQRIDQFCLKILPLIKRSDFFKYLRLGKVLLNKTKPQVNTRLKTKDEIAFL 65 Query: 65 FAIEPYLHNHSEVVDLTQVQDDLQVIFEDEQLIVVDKPAGVVCQPDAKHELFNLANSLLK 124 F I PYL +++ + L V+D L++IFEDE +IVVDKP G+VCQPD KH + NL+N LLK Sbjct: 66 FDINPYLQTNNDYLSLDLVKDKLKIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLK 125 Query: 125 HCGYNQYFKNSLSFIPRFAHRIDRNTCGLVIGAKTNQALQELEAVFRHNLLMKQYQGLVF 184 HCGY Q+ N L+F P+FAHRIDRNT G+VIGAKTN+AL+EL VF++N L K+Y+GLVF Sbjct: 126 HCGYRQFDSNKLNFYPQFAHRIDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVF 185 Query: 185 GPFNFKGTQKAYWAKDAYQALVTVKAKPFPNAKPITTIFENSKYLTKLDLSLLTIRLVSG 244 G FN G Q AYW KD +VTVK KPFP AK I+T FENS Y+ + D+SL+TIRL+SG Sbjct: 186 GQFNHLGLQTAYWKKDNNNGIVTVKWKPFPEAKKISTFFENSSYIAQKDMSLITIRLISG 245 Query: 245 KTHQIRACLNLLNTQLVGDRKYQLLQFKNRNRDFKHQALHATNLSFAQLDKQKFPLLANY 304 +THQIRACLNL + QLVGD+KY L+QFKNRN +KHQALHA L F +L+ KFP+L NY Sbjct: 246 RTHQIRACLNLFSNQLVGDKKYSLIQFKNRNNKYKHQALHAYELVFPKLETSKFPILTNY 305 Query: 305 SQRQFKSQLVPWFASLIK 322 S QFKS++VPWF LI+ Sbjct: 306 SLMQFKSKIVPWFEYLIQ 323 >ref|NP_072871.1| sfhB protein, putative [Mycoplasma genitalium G-37] Length = 308 Score = 75.9 bits (185), Expect = 6e-016, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 45/298 (15%) Query: 43 LLNNTKAKLGQRVSSGDTIVF--QFAIEPYLHNHSEVVDLTQVQD---DLQVIFEDEQLI 97 L+ N + K+ ++++ ++++ I+ +H+ + +T V+ L+V+FED+ L+ Sbjct: 31 LIMNGQIKVNEKLTFKNSLIVAKDDVIKVEIHDETTSDFITSVEPYNLKLEVLFEDKDLM 90 Query: 98 VVDKPAGVVCQPDAKHELFNLANSLLKHCGYNQYFKNSLSFIPRFAHRIDRNTCGLVIGA 157 V++KP+G++ P FN SLL C ++ KN + + HR+DR+T G ++ Sbjct: 91 VINKPSGLLTHPTT----FNEKASLLAACIFHNN-KNPVYLV----HRLDRDTSGAIVVC 141 Query: 158 KTNQALQELEAVFRHNLLMKQYQGLVFGPFN-FKGTQKAYWA-----KDAYQALVTVKAK 211 K +L L+ ++ L + Y LV PFN G+ A A K ++ T KAK Sbjct: 142 KNQASLLNLQNQLQNRTLKRYYVALVHFPFNALTGSINAPLARVNNNKVMFKIAQTAKAK 201 Query: 212 PFPNAKPIT---TIFENSKYLTKLDLSLLTIRLVSGKTHQIRACLNLLNTQLVGDRKYQL 268 + IT I +N K +L+++ L++G+THQIR L + + D Y + Sbjct: 202 -----QAITKFKVINQNEK------AALISLELLTGRTHQIRVHLKFIQHPVYNDPLYGI 250 Query: 269 LQFKNRNRDFKHQALHATNLSFAQLDKQKFPLLANYSQRQFKSQLVPWFASLIKGVSI 326 K+ +D Q LHA + F K P+ F + L P F++ +K +++ Sbjct: 251 ---KSEKKDSYGQFLHANRICFIHPTLNK-PM-------DFHAPLEPKFSTKLKSLNL 297 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508288|ref|NP_110238.1| phosphodiesterase [Mycoplasma pneumoniae M129] (325 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073043.1| hypothetical protein MG371 [Mycoplasma genitali... 523 e-150 ref|NP_072853.1| mgpA protein (mgpA) [Mycoplasma genitalium G-37] 103 2e-024 >ref|NP_073043.1| hypothetical protein MG371 [Mycoplasma genitalium G-37] Length = 324 Score = 523 bits (1346), Expect = e-150, Method: Compositional matrix adjust. Identities = 251/320 (78%), Positives = 273/320 (85%) Query: 1 MINIDPHFIHNLTNKLKTFDNFSLYVHVNPDXXXXXXXXXXXXXXXXXXPHKKAYVMGSH 60 MI+IDP FI N + K+K FD FSL+VHVNPD KKAYVMGS+ Sbjct: 1 MISIDPQFIKNFSKKVKQFDKFSLFVHVNPDFDAFGSAFAFKTFLNTFFSEKKAYVMGSY 60 Query: 61 NIKADGKDLFPFEAAPIDDAFVKNSLAIIFDTSNQERVLTQKHKLAKETVRIDHHPKTES 120 NI ADG++LFPFE I+D FVK SLAIIFDTSNQERVLTQKHKLAKETVRIDHHP+TE Sbjct: 61 NINADGRELFPFEQTDINDDFVKESLAIIFDTSNQERVLTQKHKLAKETVRIDHHPRTEK 120 Query: 121 FADLEWIDPAFSAAAEMVGYLILQMGYELNAEMAAYIYAGIITDTQRFSSSATTPQTFAL 180 FAD+EWID +FSA AEM+GYLILQMGY+LN E+A+Y+YAGIITDTQRF TTPQTFAL Sbjct: 121 FADMEWIDSSFSATAEMIGYLILQMGYKLNDEIASYLYAGIITDTQRFWGPTTTPQTFAL 180 Query: 181 TAKLLETGFNRNKVHDAVYLKPLLEHKYFSYVLNKAKITPNGLAYALLKKGTYKQFGVVS 240 TAKL+ETGFNRNKVHDAVYLKPLLEHKYFSYVL+KAKIT NGLAYAL+KKG YK FGVVS Sbjct: 181 TAKLMETGFNRNKVHDAVYLKPLLEHKYFSYVLSKAKITKNGLAYALIKKGAYKHFGVVS 240 Query: 241 PLPMVHALNNIKGVKIWTTCYFNEDIKKWIGSIRSRSIPINNFAQMFGGGGHKYAAAFVL 300 PLPMVHALNNIKGVKIWTT YFNE IKKWIGSIRSR+IPINNFAQMF GGGHKYAAAFVL Sbjct: 241 PLPMVHALNNIKGVKIWTTVYFNESIKKWIGSIRSRNIPINNFAQMFNGGGHKYAAAFVL 300 Query: 301 DDKRQFMKLVEIMDDFLAKQ 320 D+K QFMKLV+IMDDFLAKQ Sbjct: 301 DEKNQFMKLVQIMDDFLAKQ 320 >ref|NP_072853.1| mgpA protein (mgpA) [Mycoplasma genitalium G-37] Length = 361 Score = 103 bits (257), Expect = 2e-024, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 136/307 (44%), Gaps = 17/307 (5%) Query: 14 NKLKTFDNFSLYVHVNPDXXXXXXXXXXXXXXXXXXPHKKAYVMGSHNIKADGKDLFPFE 73 N +K FD ++ HV PD +K+ +G++N +LF F Sbjct: 54 NAIKQFDKIVIFHHVRPDGDCLGAQQGLFHLIKANFKNKEVKCVGNNN------NLFSFI 107 Query: 74 ----AAPIDDAFVKNSLAIIFDTSNQERVLTQK---HKLAKETVRIDHHPKTESF-ADLE 125 ID++F+K +LAI+ D + + R+ ++ L K +RIDHHP + Sbjct: 108 NMTFTNQIDESFLKEALAIVVDANYKNRIELRELLDKNLFKAVLRIDHHPNEDDLNTSFN 167 Query: 126 WIDPAFSAAAEMVGYLILQMGYELNAEMAAYIYAGIITDTQRFSSSATTPQTFALTAKLL 185 +++ ++ A E + + + + A +Y GI TD+ RF S T+ +T L A L Sbjct: 168 FVEESYVACCEQIVEMATVAKWTIPPVAATLLYIGIYTDSNRFLYSNTSYRTLYLAAILY 227 Query: 186 ETGFNRNKVHDAVYLKPLLEHKYFSYVLNKAKITPNGLAYALLKKGTYKQFGVVSPLPMV 245 + + VHD + L + K+ YV N K + + KK + V Sbjct: 228 KAKADIRIVHDHLNHTSLADLKFKKYVYNHFKTQGQVIYFICTKKIQKRLRMTADQCARV 287 Query: 246 HALNNIKGVKIWTTCYFNEDIKKWIG-SIRSRSIPINNFAQMFGGGGHKYAAAFVLDDKR 304 + L+NI KIW +F E I +RS I + + A +GGGGH A+ ++ +K+ Sbjct: 288 NLLSNIADYKIWL--FFIEQANNEIRIDLRSNGINVRDIAIKYGGGGHNNASGAIITNKK 345 Query: 305 QFMKLVE 311 Q +V Sbjct: 346 QISDVVS 352 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508289|ref|NP_110239.1| Thiamin biosynthesis protein [Mycoplasma pneumoniae M129] (387 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073044.1| NTP-utilizing enzyme (GuaA family) [Mycoplasma ... 481 e-138 >ref|NP_073044.1| NTP-utilizing enzyme (GuaA family) [Mycoplasma genitalium G-37] Length = 385 Score = 481 bits (1238), Expect = e-138, Method: Compositional matrix adjust. Identities = 237/387 (61%), Positives = 291/387 (75%), Gaps = 2/387 (0%) Query: 1 MGLHNEPNTILICRYGELVLKGKNRLQFVKQLKKNVKQAFKKLSITNPVDYQFDMLVVGE 60 M L++E +L+ RYGELVLKGKNR F KQLK N+K+AFKKL I N + Y+FD +VV + Sbjct: 1 MELNSE--DVLVARYGELVLKGKNRSYFTKQLKINIKKAFKKLEINNSIVYEFDRIVVFD 58 Query: 61 VISTQRSLLKNLFTRLPGLSVCLFALQIPHDEXXXXXXXXXXXXSHPSFKIEVRRRDKLF 120 + QR++L+ LF+ LPG+S+ FA QI +E SFK+EV+RRDK F Sbjct: 59 IKKEQRAILQELFSFLPGISLFFFASQIVREENKLLDLLFNLFKDFNSFKLEVKRRDKNF 118 Query: 121 ACNSSAFKKYLALQLWEKYQLKGKLVDPAITVHVEVTKEHFLIISESFNGIGGLPVFTSG 180 A NSS FKKYLA++L+EKYQLKG + +P I ++E+ KEHFL+ +E F G GGLPV++SG Sbjct: 119 AENSSNFKKYLAVKLFEKYQLKGVINNPEIIANIEILKEHFLVFTERFKGKGGLPVYSSG 178 Query: 181 TALALLSGGIDSPVAASLVLQRGFNVDFITFINEPGHNAATIGKIQRLANLVSLNQTLCT 240 AL LLSGGIDSPVAASLV+QRGFN+DFITFINEP N TI KI RLANL+S N+T+C+ Sbjct: 179 KALVLLSGGIDSPVAASLVMQRGFNIDFITFINEPNKNQKTIEKITRLANLISFNKTICS 238 Query: 241 GRLFVFDFTDLQKELSHISLEGYRIVLMRRCFYKIASLFKYDCLITGEALGQVASQTIDN 300 G+L VFDFT +QKEL HIS E YRIVLMRR FYK AS+FKYDCL+TGE LGQVASQTI+N Sbjct: 239 GKLLVFDFTAIQKELIHISNESYRIVLMRRVFYKAASMFKYDCLVTGEVLGQVASQTIEN 298 Query: 301 LKVIQAVVPNTFVIRPLIGLSKDKIIEWAKALGTFETSIEHHMDTCTVFXXXXXXXXXXL 360 LKVIQ+ P+TF++RPLIG SKDKIIE AK TF+ SIE H+DTC+ F L Sbjct: 299 LKVIQSATPDTFIVRPLIGFSKDKIIELAKFFNTFDISIEQHLDTCSEFSPKNPTTKAKL 358 Query: 361 AIVEKLESELLFVRELIEAGVKKLQND 387 VEKLESEL+F+ +LIE GV +L ND Sbjct: 359 INVEKLESELIFLNDLIEKGVSELSND 385 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508290|ref|NP_110240.1| hypothetical protein MPN551 [Mycoplasma pneumoniae M129] (281 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073045.1| hypothetical protein MG373 [Mycoplasma genitali... 441 e-126 >ref|NP_073045.1| hypothetical protein MG373 [Mycoplasma genitalium G-37] Length = 281 Score = 441 bits (1134), Expect = e-126, Method: Compositional matrix adjust. Identities = 204/280 (72%), Positives = 243/280 (86%) Query: 1 MGFTKQYKIDFDIIDNQIVLSNNYFQKHKGSFRKITGTRFGKVIGISEYETSLKTWANMV 60 MGF KQYK DFDI+DNQIVLS YF ++K F+KITGTRFGKV+G+SEYE+S KTWANMV Sbjct: 1 MGFIKQYKTDFDIVDNQIVLSEQYFLRNKALFKKITGTRFGKVLGLSEYESSFKTWANMV 60 Query: 61 KIYEDEFDETLSRAGQVIEPKIRDYVIAKTGFNFHSYDPKEVKWDLFPENPVFGGIPDGE 120 KIYEDEFDETL++AG +IEPKIRDYV KTGFNFHSYDPK+V++DLF ++ VFGGIPDGE Sbjct: 61 KIYEDEFDETLAKAGNIIEPKIRDYVNLKTGFNFHSYDPKKVQFDLFKDDSVFGGIPDGE 120 Query: 121 PVDVYGKLAYDTNAPMLEIKTTSCDSLVYKKINGNLKIVFDENGMPIVKKINGKKDSWFD 180 P+D G+LAY + PMLEIKTTSCDSL+YKKINGNLK++ DENGMPIVKK +GKKDSWFD Sbjct: 121 PLDENGELAYQNDLPMLEIKTTSCDSLIYKKINGNLKMILDENGMPIVKKKDGKKDSWFD 180 Query: 181 SNGKIVISPAYYCQIGLYLYLRNITKGMFAIAFLEPQDYVHPEWFEAKQRDIRLVPVQID 240 SNGKI+IS YYCQIGLYLYLRN+ KG+FAIAFL+P+DYV PE F A R+IRL+P++ID Sbjct: 181 SNGKIIISTLYYCQIGLYLYLRNVNKGLFAIAFLKPEDYVLPEQFNASNREIRLIPIKID 240 Query: 241 RKAFEVLTNKAQLWYNSFIRTGKSPQLTSQDWEWLRENGI 280 K F VL +KA++WY ++I TGKSP+LT D +WL+ENGI Sbjct: 241 HKGFSVLVDKARIWYENYILTGKSPKLTESDIQWLKENGI 280 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508291|ref|NP_110241.1| hypothetical protein MPN552 [Mycoplasma pneumoniae M129] (269 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073046.1| hypothetical protein MG374 [Mycoplasma genitali... 309 2e-086 >ref|NP_073046.1| hypothetical protein MG374 [Mycoplasma genitalium G-37] Length = 274 Score = 309 bits (791), Expect = 2e-086, Method: Compositional matrix adjust. Identities = 150/273 (54%), Positives = 197/273 (72%), Gaps = 4/273 (1%) Query: 1 MDRKIVALDINPANFFDAANDLAIWKDFFNKAQ-EKHQLVFISSCWQQTIVYXXXXXXXX 59 MDRKIV LDIN ANFF+ DL +WK+FFN Q HQLVF+SSCWQQ ++Y Sbjct: 1 MDRKIVVLDINTANFFNTTKDLEVWKNFFNFIQANNHQLVFMSSCWQQAVLYLLDLLSLD 60 Query: 60 XXXXIAESGAITWFCKTNQYDYQAFLDLASINVIIHHAVITNSGIFTMGKSRVDDTANLS 119 IAESGAI W KTN++ YQ+FLD SI+ I+HHA+ITNSG+F +GKS++ + N + Sbjct: 61 DVDIIAESGAIIWISKTNEFIYQSFLDSVSIDTIVHHAIITNSGVFAIGKSKISEEPNTT 120 Query: 120 ANYFISLQKYKDFKSLWLTDFEQTLKYENFLKQLGKLELSSIYVFSPQYHMDLAFIDQIA 179 NYFISL+KYK FK +WLT+F+QTLKY+NFLK L ++++SSIYVFSPQYH+D ++ I+ Sbjct: 121 INYFISLEKYKQFKLIWLTEFDQTLKYQNFLKNLSEMDVSSIYVFSPQYHLDFQLMEHIS 180 Query: 180 SGQPRFTHSNFYPNNLLFTSNKVTKFNALEKYTKTQGLMLKDVHYINLDETLVQNSEQLA 239 SGQP+F +SNFY N LFTS K +KF+ALE Y K++ LKDVHY+N+ E + N QLA Sbjct: 181 SGQPKFHYSNFYNENFLFTSTKNSKFSALETYVKSKNCSLKDVHYLNVTEVPINNINQLA 240 Query: 240 SAVFIKKQ---NNEGLTVQDIPDVLQKLCAQLL 269 S VF+ K+ N+E +I VL+ +C QL+ Sbjct: 241 SVVFLSKKQPDNDEEFNNPEISIVLKGICEQLM 273 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508292|ref|NP_110242.1| threonyl-tRNA synthetase [Mycoplasma pneumoniae M129] (564 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073047.1| threonyl-tRNA synthetase (thrS) [Mycoplasma gen... 783 0.0 >ref|NP_073047.1| threonyl-tRNA synthetase (thrS) [Mycoplasma genitalium G-37] Length = 564 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/564 (64%), Positives = 448/564 (79%) Query: 1 MLAGVLLLQSWLKANYPQVQFGSYGVQEGEFYLDFKVEKSFSIKEFEQLEQDLNAYFNQL 60 MLAGVLLLQ WLK Y VQFG +G EFYLDF + ++FS K+F ++E DLN+ ++L Sbjct: 1 MLAGVLLLQIWLKCKYANVQFGEHGFNGDEFYLDFYINENFSTKQFAKIESDLNSLSSKL 60 Query: 61 NNVVQTKIDKTKSLKFFQADPFTTTLIESIESNSLVVTTVNEQTFWVHDLVLPLPKQGFV 120 + Q + ++L FF+ D FT L++ N +T + FW+ DL L K+ F+ Sbjct: 61 EGISQKFVSLDEALSFFENDQFTKNLLKKSNLNKFKITFFENKHFWIEDLTLTFIKKSFI 120 Query: 121 KLLNVSANYFLGDPTKPQLQRLVGIFAASKEQLKSLIAANEQKYQNDHRAIGKRLEIFTF 180 KLLNVS NYFLGDP++ QLQR+ GIFA SK++L+ LI NE++ + DHR++GK+LE+F+F Sbjct: 121 KLLNVSVNYFLGDPSQLQLQRINGIFAQSKKELEQLIKENEERLKKDHRSLGKQLELFSF 180 Query: 181 DPLVGAGFPIWLEKGAVLKKIIGDFVHYQQLMFGFKTVSSPVLANLELYKISGHYVHYSE 240 DPL+GAG PIWL KG L+ IIG+FVH+QQL+FGF TV SPVLAN+EL+KISGHY HY E Sbjct: 181 DPLIGAGLPIWLAKGTTLRNIIGNFVHHQQLLFGFNTVCSPVLANIELFKISGHYQHYKE 240 Query: 241 DMFPSVKLENQMMMLRPMTCPHHCLIFKHKRRSYKELPQRFCEDSILHRFEASGGLTGLE 300 DMFP++KL++Q MMLRPMTCPHHCLIFK KR SYK++PQRF EDSILHRFEASGGL GLE Sbjct: 241 DMFPAIKLDSQAMMLRPMTCPHHCLIFKQKRYSYKKMPQRFSEDSILHRFEASGGLIGLE 300 Query: 301 RVRCMTLLDNHIFCRTDQIKAEIKNAFKLIQTVNNKFGFSFDRIDLALHDPNNKAKFIDN 360 RVRCMTLLDNHIFCR DQIK+EIKNAF LIQ VN KFGF FDRIDL+LHDP N++KFIDN Sbjct: 301 RVRCMTLLDNHIFCRADQIKSEIKNAFNLIQKVNKKFGFIFDRIDLSLHDPKNQSKFIDN 360 Query: 361 DQLWANSESQIESVFKELNVPYKIDVGAAAFYGPKIDFQFKTALNKMITIATIQLDFLLP 420 LW SESQ+E+V K+LN+ Y+ ++GAAAFYGPKIDFQFKT KMITIATIQLDFLLP Sbjct: 361 PGLWRESESQMENVLKDLNIQYQKEIGAAAFYGPKIDFQFKTIFKKMITIATIQLDFLLP 420 Query: 421 ERFELRYFDEQSNAQTPVIIHVGIVGTYERFIAALLEKTHGNLPLWMAPVQVVVIPVNID 480 E+F+L Y D+++ + PVIIHVGI+GTYERFIAALLEKT GN PLW+APVQ V+IPVNI Sbjct: 421 EKFDLTYIDKKNTLKKPVIIHVGIIGTYERFIAALLEKTSGNFPLWLAPVQAVIIPVNIQ 480 Query: 481 KHEXXXXXXXXXXXXENIRVSLDESEDRLGKKVRTAIVNKIPLQIIVGDKEMQDLTRITC 540 KH ENIRV+LD+++DRL KKVR AI+ KIPLQ+IVGDKE+++L ++TC Sbjct: 481 KHLKAAKKLYNKLLKENIRVNLDDNQDRLAKKVRQAIIEKIPLQLIVGDKEIENLEKLTC 540 Query: 541 RGFKGEKVQKLYWANFVKKVRKDG 564 RGFKGEK+ ++ + NFVK+VR+DG Sbjct: 541 RGFKGEKITRISFNNFVKRVRRDG 564 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508293|ref|NP_110243.1| hypothetical protein MPN554 [Mycoplasma pneumoniae M129] (104 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073048.1| hypothetical protein MG376 [Mycoplasma genitali... 158 1e-041 >ref|NP_073048.1| hypothetical protein MG376 [Mycoplasma genitalium G-37] Length = 104 Score = 158 bits (400), Expect = 1e-041, Method: Compositional matrix adjust. Identities = 76/103 (73%), Positives = 91/103 (88%) Query: 1 MLNRVFLEGEIESSCWSVKKTGFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKK 60 MLN VFLEGEIES+ WS KKTGFLVTIKQ R FGER FTD++V YANGQLA+ELE +T+K Sbjct: 1 MLNCVFLEGEIESTKWSHKKTGFLVTIKQKRLFGERSFTDFFVFYANGQLAFELEAYTQK 60 Query: 61 YKTISIEGILRTYLERKSEIWKTTIEIVKIFNPKNEIVIDYKE 103 +KTISIEGILRTYLE++S IWKTTIE+VKI P ++++IDY+E Sbjct: 61 FKTISIEGILRTYLEKRSGIWKTTIEVVKIMKPNSKVMIDYQE 103 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508294|ref|NP_110244.1| hypothetical protein MPN555 [Mycoplasma pneumoniae M129] (193 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073049.1| hypothetical protein MG377 [Mycoplasma genitali... 341 4e-096 >ref|NP_073049.1| hypothetical protein MG377 [Mycoplasma genitalium G-37] Length = 193 Score = 341 bits (874), Expect = 4e-096, Method: Compositional matrix adjust. Identities = 163/193 (84%), Positives = 181/193 (93%) Query: 1 MATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIV 60 MATNLKS AKL KPIQYD+VIEV+RIFADPAFIEQHRQRILASFKDAKESALYHELTHIV Sbjct: 1 MATNLKSIAKLQKPIQYDKVIEVDRIFADPAFIEQHRQRILASFKDAKESALYHELTHIV 60 Query: 61 IKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQGAEDNTVQAIAEKIIKKALVF 120 IKDNLFS AMN IV YFEF I+ ELKNV+EGLKRDV++ A++ T+Q+IAEKIIKKALVF Sbjct: 61 IKDNLFSAAMNEIVSYFEFQINPEELKNVVEGLKRDVVKDADEKTIQSIAEKIIKKALVF 120 Query: 121 NHLQKEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMVLETINH 180 N LQKEWKVE++D++VK VISLYYEKTNQ+VREYLDDKQKFEG+RTAL+EERMVLETINH Sbjct: 121 NFLQKEWKVEVSDDIVKRVISLYYEKTNQNVREYLDDKQKFEGIRTALIEERMVLETINH 180 Query: 181 FKFHFNLTGQLPN 193 FKFHFNLTGQLP+ Sbjct: 181 FKFHFNLTGQLPS 193 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508295|ref|NP_110245.1| arginyl-tRNA synthetase [Mycoplasma pneumoniae M129] (537 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073050.1| arginyl-tRNA synthetase (argS) [Mycoplasma geni... 697 0.0 >ref|NP_073050.1| arginyl-tRNA synthetase (argS) [Mycoplasma genitalium G-37] Length = 537 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/537 (61%), Positives = 405/537 (75%) Query: 1 MLFINTDLQECLNALNLEFDEHKELVKLVKNNSFSGFASTVVFHLKGVNQKETAQQIAAW 60 M FI DL+EC++AL L+FD+ KELVKLVKNNSF+GF+ST++F LK N K+ A I W Sbjct: 1 MFFIINDLKECISALKLKFDDQKELVKLVKNNSFNGFSSTIIFQLKSENHKKIADSIVEW 60 Query: 61 LLKHKKAHYRRVFVANNNFINFEISPQKYLDFLXXXXXXXXXXXXVLIEWVSANPTGELH 120 LK+KK +Y+ VF+ANNNFINF+IS QKYL++L +LIE VSANPTG +H Sbjct: 61 FLKNKKDNYQNVFIANNNFINFQISYQKYLEYLIKTPCFTKKNIKILIESVSANPTGRIH 120 Query: 121 LGHVRNAFFGHVLNNLMVFLGFQTVREYWVNDYGQQARVFGFSVYQALHLQQNIKVTPHP 180 LGHVR AFFG VLNNL LG+ TV EYWVNDYGQQARVF FSVYQ+L L++NI + HP Sbjct: 121 LGHVRIAFFGDVLNNLAKLLGYTTVCEYWVNDYGQQARVFSFSVYQSLQLKKNIAIQQHP 180 Query: 181 DGYEGELVDSIAKTITGIPLDKLSFEEFLQQPFLDQLLADCTAKVLEVIKQDLATIHIHF 240 DGY G ++D IA I P+D L+FEEF + FLD L +CT KVL +IK DL IH+ Sbjct: 181 DGYSGIVIDKIASEIENFPVDNLNFEEFCKTSFLDHFLVNCTQKVLSLIKSDLNKIHVFI 240 Query: 241 DSWKFESQVVKETDYKKLLTQFKDEAHYEKDGAIWLKTTLYGDDKDRVLVRQDNRPSYFG 300 DSWKFES++VK+T++ LL Q K +++ +D A+WLKTTLYGDDKDRVL+R D R SYFG Sbjct: 241 DSWKFESEIVKKTNFNDLLEQLKPNSYFYQDNALWLKTTLYGDDKDRVLIRSDKRASYFG 300 Query: 301 TDVAYHLDKAARGFDLLYDIWGSDHEGHIKRMHCVYEGLKIHQKCQLKITALQLVMLYKN 360 TDVAYHL+K RGFD+L+++WG+DHEGHIKRM+C ++ LK K LKI ALQLV LYKN Sbjct: 301 TDVAYHLEKLQRGFDILFNVWGTDHEGHIKRMYCAFDALKNTTKTSLKIFALQLVTLYKN 360 Query: 361 KEIVRLSKRAGNVITIKQMLQMLSEDAARWFMLSQTNNSIIKIDLDTANLQNSSNPVYYV 420 KE+VRLSKRAGNVITI+ ML M+SEDAARWFMLSQ N +IIKIDLD ANLQNS+NPVYYV Sbjct: 361 KELVRLSKRAGNVITIETMLSMISEDAARWFMLSQNNGTIIKIDLDIANLQNSANPVYYV 420 Query: 421 QYAYARMCSVLKVVDQAALAQVNDCSLLTHEKEIALLDQLVYFKSLLEKVQVSHELHLLT 480 QYA+ARM S+L++ + L ++ DCSLL +EKEI+LL+QLVY+ +L+K + ELHLLT Sbjct: 421 QYAFARMNSILRIANSDQLKEITDCSLLINEKEISLLNQLVYYPFMLQKAMETGELHLLT 480 Query: 481 NYLYETATLFHSWYKACKINDPAXXXXXXXXXXXXXXXHHVFGQLLQILNITAPQQM 537 N+LYETA+LFHSWYK CKIND + Q+L +L I+ PQQM Sbjct: 481 NFLYETASLFHSWYKVCKINDDKNSLLSAQRLALLRSLQFIVKQILDVLKISTPQQM 537 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508296|ref|NP_110246.1| NADH-binding oxidoreductase GidA [Mycoplasma pneumoniae M129] (612 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073051.1| glucose-inhibited division protein A (gidA) [My... 895 0.0 >ref|NP_073051.1| glucose-inhibited division protein A (gidA) [Mycoplasma genitalium G-37] Length = 612 Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/612 (69%), Positives = 517/612 (84%) Query: 1 MSFTLTVIGGGHAGLEAAFIASKLGLKVNLLVLDPNHVGSCPCNPAIGGPAKGIVTREID 60 MSF +TVIG GHAGLEAAFI SK +KVNLLVLD NH+GSCPCNP+IGGPAKGIVTREID Sbjct: 1 MSFIITVIGAGHAGLEAAFIVSKFNIKVNLLVLDINHLGSCPCNPSIGGPAKGIVTREID 60 Query: 61 VLGGMQGKAADATALQYKLLNSSKGPAVQAIRAQIDKIAYQKWFRQQIDQTPNIELIAGE 120 VLGGMQ AAD ALQYKLLNSSKGPAVQAIRAQIDKI Y+ WF+ Q+ NI LI E Sbjct: 61 VLGGMQAIAADNNALQYKLLNSSKGPAVQAIRAQIDKIGYKNWFQSQVKLNKNINLIQSE 120 Query: 121 AVDILESNGKVKGVVLADGSELASDAVIVTTGTYLKAKTYCGSLSKEEGPDRAKRSEYLS 180 A++++ N K+KGV+L DGSEL SDAVI+TTGTYL++KTYCG+ K +GPD++K SE LS Sbjct: 121 AINLIVRNEKIKGVILKDGSELLSDAVIITTGTYLRSKTYCGNTVKNQGPDQSKNSEKLS 180 Query: 181 TNLIKRGFKTLRLKTGTPPRILRESLDFSQMAVEANTTPHLAFSFTTKNYLPLEQQVICH 240 TNLI RGFKT+RLKTGTPPRIL+ SLD++QM +E N +LAFS T KN+LPLE+Q+ C+ Sbjct: 181 TNLINRGFKTIRLKTGTPPRILKTSLDYNQMELEINNNQNLAFSTTNKNFLPLEKQIPCY 240 Query: 241 LIHTNPQIHQLILANLKQSAVFNGSIKANGPLYCPSIEDKVFRFQDKERHQIFVEPESLS 300 L+HTN +IH LIL NLK+SA+FNGSI A GPLYCPSIEDKVF+F K RHQIFVEPESLS Sbjct: 241 LVHTNQKIHDLILKNLKKSAMFNGSISAQGPLYCPSIEDKVFKFSQKPRHQIFVEPESLS 300 Query: 301 LETVYLAGFSTSFPPEVQEHIVRLLPGFKNARFQKYGYAIEYDAFSSIQLKSTLETKLIQ 360 L+T+YLAG STSF PE+Q+ I++LLPGF+NA +K+GYAIEYDAF S QLK TLETKLI+ Sbjct: 301 LDTIYLAGLSTSFTPEIQKEIIQLLPGFQNAEIKKFGYAIEYDAFLSNQLKPTLETKLIE 360 Query: 361 NLYFAGQINGTSGYEEAAGQGLIAGINAALKLQRKPEFVLQRNEAYLGVMINDLVTKEIS 420 NLYFAGQINGTSGYEEAAGQGL+AGINAALKL +KP F+LQRNEAY+GVMINDLVTK IS Sbjct: 361 NLYFAGQINGTSGYEEAAGQGLMAGINAALKLLKKPPFILQRNEAYIGVMINDLVTKTIS 420 Query: 421 DPYRLLTSRAEHRLWLRNDNLQERLIEKSRALGLVEADVYANYLEQQQKKKQLIDYLQTT 480 DPYRLLTSRAE+RLWLRNDN+QERLI+KS LGL + Y +L++++KK++LI +L+ T Sbjct: 421 DPYRLLTSRAEYRLWLRNDNVQERLIKKSFELGLTDKKTYELFLKKEKKKQELISFLKNT 480 Query: 481 TVGQIAALKLNFKNTAQTLFDFTKRAEIKLVDLVQLLPKRFDLDVQSLNQIDIDIKYAGY 540 VG++ ALK KNTAQ+L+DF KR+EI L L++ LP+++ LD ++L QI+I+IKY GY Sbjct: 481 QVGKVKALKFTNKNTAQSLYDFNKRSEINLDKLIKDLPEKYQLDSETLKQIEIEIKYEGY 540 Query: 541 IKKSEKYFKSLNNLSSVKIPLKLNYHKVPNLASEAIVKLSKIRPTDLSVASQVAGINFND 600 IKK+EKYFK L+ LS +KIP +YHKV NLASEAI KLS +P++L++ASQ+AG+NFND Sbjct: 541 IKKNEKYFKGLDKLSKIKIPHTFDYHKVKNLASEAIFKLSNFKPSNLAIASQIAGVNFND 600 Query: 601 ILAIKHFLDNHE 612 I+AIKHFL +E Sbjct: 601 IIAIKHFLKTYE 612 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508297|ref|NP_110247.1| methyltransferase GidB [Mycoplasma pneumoniae M129] (191 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073052.1| glucose-inhibited division protein B (gidB) [My... 217 5e-059 >ref|NP_073052.1| glucose-inhibited division protein B (gidB) [Mycoplasma genitalium G-37] Length = 192 Score = 217 bits (553), Expect = 5e-059, Method: Compositional matrix adjust. Identities = 112/191 (58%), Positives = 140/191 (73%), Gaps = 1/191 (0%) Query: 1 MNNSKLKQYVQLVQTANQNFNLTGLKTEGEIYEHLVQEIIELFNEYDSYFDHKKVADLGS 60 MNN+ ++YV LV AN+NFNLTG KT+ IY++LV EI+ LF Y+ +F K VADLGS Sbjct: 1 MNNANFEKYVDLVFEANKNFNLTGFKTKEAIYQNLVIEILTLFKGYEKFFIDKTVADLGS 60 Query: 61 GNGCPGVILKLLFPQIKTLDLIDSKHKKVNFLKEVIQTLELNNTQALCARIENHTEQYDT 120 GNG PG+ILKLLF +IK L LIDSKHKK++FL ++ + L L T A+C RIE H YD Sbjct: 61 GNGSPGIILKLLFQKIKKLVLIDSKHKKISFLNKLTKQLNLEKTVAICERIEVHKNHYDV 120 Query: 121 LCSRGLGSIIEVNAFALKLLKPNGIIFHIKQSLDQYLEFEDSEQKDQFKPLFFKFFHGKR 180 +CSRGL +II+VN A LL GIIFHIKQSLDQY+EFE S QK+QF LF K F + Sbjct: 121 ICSRGLSTIIKVNDLAFSLLNSKGIIFHIKQSLDQYIEFEKSNQKNQFNLLFIKHFTSQN 180 Query: 181 QQ-ILIAMKKN 190 ++ ILIA++KN Sbjct: 181 KKLILIALQKN 191 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508298|ref|NP_110248.1| hypothetical protein MPN559 [Mycoplasma pneumoniae M129] (235 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073053.1| hypothetical protein MG381 [Mycoplasma genitali... 252 2e-069 >ref|NP_073053.1| hypothetical protein MG381 [Mycoplasma genitalium G-37] Length = 218 Score = 252 bits (644), Expect = 2e-069, Method: Compositional matrix adjust. Identities = 122/215 (56%), Positives = 159/215 (73%) Query: 14 MFKLGWASFVDPELAKTAFLEFAKQFYVTSSAGAILFDLKKSQGLDQLQAIEKTRKVIIT 73 M KLGWASF + E A+ F++FA QFY AG ILF+LKK+ G++QL IEK +KVII Sbjct: 1 MIKLGWASFSNTEFAQDIFIKFANQFYKQDDAGTILFELKKTLGVNQLDEIEKNKKVIIV 60 Query: 74 EQFANQTGKWILFDKENTKRINSLAQEHITPLIKRILRLADFKNVLINVQHHKKLQKCLL 133 QF N GK++LF+KENTKRINSLA EHI+ +K+I RL+ FK++LI+VQHHKKLQKCLL Sbjct: 61 NQFQNSLGKFLLFNKENTKRINSLANEHISSFLKKIFRLSGFKDMLIDVQHHKKLQKCLL 120 Query: 134 WEINGLICLVESLQFMENPTAIMEWFQGLKKHCPNVAVVTISGQHKPVIEPSLTEYKAVF 193 EI+ L+CL+ S QF + I+EW+Q LKKH + V+T S KPVIEP++ EYKA+F Sbjct: 121 REIHLLVCLINSNQFSDELMQIIEWYQYLKKHSSKLFVITASSDKKPVIEPTINEYKAIF 180 Query: 194 GSSLLSFHLDATTINNSHLVRQILEQIKIKATLKS 228 G L SFHLD ++ L +++L+QIKIKAT K+ Sbjct: 181 GEYLSSFHLDLKNNQSNDLFQKLLDQIKIKATSKT 215 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508299|ref|NP_110249.1| arginine deiminase [Mycoplasma pneumoniae M129] (438 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508300|ref|NP_110250.1| uridine kinase [Mycoplasma pneumoniae M129] (213 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073054.1| uridine kinase (udk) [Mycoplasma genitalium G-37] 336 1e-094 >ref|NP_073054.1| uridine kinase (udk) [Mycoplasma genitalium G-37] Length = 213 Score = 336 bits (861), Expect = 1e-094, Method: Compositional matrix adjust. Identities = 156/210 (74%), Positives = 185/210 (88%) Query: 4 KKGILVAIGGGSCSGKTTIADMIYQLLRKKLKVAILPQDNYYKPYKNKSMAQRKAINFDH 63 +KGILVAI GGSCSGKTT+A+MIYQLL KKLKVAI+ QDNYYK YKNK + +RK INFDH Sbjct: 3 EKGILVAISGGSCSGKTTVAEMIYQLLSKKLKVAIICQDNYYKSYKNKPLLKRKTINFDH 62 Query: 64 PDAFDWKLLWSHLDNLLMGKTVAVPMYDYVNYTRKKETIEIGPLNVVILEGLMPWFDERI 123 PDAFDWKLL SH+++LL G V VP+YDY+NYTR K+T +IGP++VVILEGLMPWFDE++ Sbjct: 63 PDAFDWKLLRSHIEDLLNGSIVNVPLYDYINYTRAKKTAKIGPIDVVILEGLMPWFDEKL 122 Query: 124 AKLCKLKIFVEATGEERLIRRIERDWERGRDVASIIKQWREAVSPMYEIFVEKMKQKADL 183 ++L KLKIF+E GEERLIRRIERDW+RGR++ SIIKQWRE V+PMYEIFVEKMK+ ADL Sbjct: 123 SRLSKLKIFIETNGEERLIRRIERDWQRGRNIDSIIKQWREIVAPMYEIFVEKMKRNADL 182 Query: 184 IIPWSERHEVSTNVLDFAIEHLFRKHVDPN 213 I+PWS+R EVST+VLD AIEHLF K V+ N Sbjct: 183 ILPWSQRREVSTSVLDVAIEHLFHKTVEKN 212 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508301|ref|NP_110251.1| probable NH(3)-dependent NAD(+) synthetase [Mycoplasma pneumoniae M129] (248 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073055.1| NH(3)-dependent NAD+ synthetase, putative [Myco... 291 5e-081 >ref|NP_073055.1| NH(3)-dependent NAD+ synthetase, putative [Mycoplasma genitalium G-37] Length = 248 Score = 291 bits (745), Expect = 5e-081, Method: Compositional matrix adjust. Identities = 135/245 (55%), Positives = 180/245 (73%), Gaps = 1/245 (0%) Query: 4 NLLNYLNELEAWLTNYVNEAHXXXXXXXXXXXXXXXXXXXMTKKLFP-QNHLTLVMHINN 62 NL+ YL EL+ WL +YV ++ + K+ F +NHL L+MHINN Sbjct: 3 NLIKYLKELQNWLFDYVKKSKAKGVIFGLSGGIDSAVVAAIAKETFGFENHLALIMHINN 62 Query: 63 SELDHKATTALVEQLQLNNKQVDLEPPYRAMLQALTIDPQKELMVAGNLKARLRMACLYT 122 S+LD +AT+ LV+++Q N+ ++LE + +++ L IDP+K+ + AGN+KARLRM LY Sbjct: 63 SKLDFQATSELVKKMQFNSINIELEESFNLLVKTLGIDPKKDFLTAGNIKARLRMITLYA 122 Query: 123 HAQKHNYLVLGTGNFIEYSLGYFTKWGDGACDVAPLAFLLKSDVYALSQHFNVPELVIER 182 +AQKHN+LVLGTGNF+EY+LGYFTKWGDGACD+APLA+LLK DVY L++HFN+PE+VI R Sbjct: 123 YAQKHNFLVLGTGNFVEYTLGYFTKWGDGACDIAPLAWLLKEDVYKLAKHFNIPEIVITR 182 Query: 183 APTASLFAGQTDEAEMGLTYKELDQYFQGHLQLSATKQQRVDHLRQSSQHKRSLPKTFKP 242 APTASLF GQTDE EMG+TYKELDQY +G L LS+ KQ+ V L+ ++HK + P FK Sbjct: 183 APTASLFEGQTDETEMGITYKELDQYLKGDLILSSEKQKIVLDLKAKAEHKHNSPLKFKH 242 Query: 243 LYSFQ 247 LY+FQ Sbjct: 243 LYNFQ 247 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508302|ref|NP_110252.1| small GTPase OBG involved in cell growth [Mycoplasma pneumoniae M129] (433 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073056.1| GTP-binding protein (obg) [Mycoplasma genitaliu... 694 0.0 ref|NP_072684.1| GTP-binding protein, putative [Mycoplasma genit... 76 5e-016 >ref|NP_073056.1| GTP-binding protein (obg) [Mycoplasma genitalium G-37] Length = 433 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/433 (76%), Positives = 374/433 (86%) Query: 1 MGLTDYCECRFSAGNGGNGIIAWRREAHYDKXXXXXXXXXXXXXVVLQADHNCDSLFFLK 60 M +TDYCECRF+AGNGGNGIIAW+REAHYDK V+LQADHNCDSLFFLK Sbjct: 1 MAITDYCECRFTAGNGGNGIIAWKREAHYDKGGPGGGNGGNGGNVILQADHNCDSLFFLK 60 Query: 61 NKKHLFAESGGNGKPDLAHGKNGEDLVIKVPVGTTVRDLDTNQILMDFVHDQQSFILCYX 120 NKKHLFAE G NGKPDLAHGKNG DL+IKVP+GTTV++L+ N +L+DFVHD+QSFILC+ Sbjct: 61 NKKHLFAEDGQNGKPDLAHGKNGSDLLIKVPIGTTVKNLENNSVLVDFVHDKQSFILCFG 120 Query: 121 XXXXXXNAAFKSPIMRAPNLYENGDKGQSLHVSLEIKYLANVGIVGFPNTGKSTLISKLS 180 NAAFKSPIMRAPNLYENGDKG+ L+VSLE+KYLANVGIVGFPN+GKSTLISKLS Sbjct: 121 GKGGKGNAAFKSPIMRAPNLYENGDKGEILNVSLEVKYLANVGIVGFPNSGKSTLISKLS 180 Query: 181 NAKPKIANYRFTTLVPVLGVVKHNDQSLVFADIPGLIENASEGSGLGHYFLRHIERCEIL 240 NAKPKIANYRFTTL+PVLGVVK+ + SLVFADIPGLIENASEGSGLGH FLRHIERCEIL Sbjct: 181 NAKPKIANYRFTTLIPVLGVVKYQNNSLVFADIPGLIENASEGSGLGHDFLRHIERCEIL 240 Query: 241 IHLISLDPVDHDDPCQAYEQIMRELSKYSQLLVKKKMLVVANKTDVDLDGTRFQKLAQYL 300 IHLISLDPVD+DDPC+AY QIM ELSKYS LLVKKKMLVVANK DV+ RF+KL ++L Sbjct: 241 IHLISLDPVDNDDPCKAYLQIMDELSKYSPLLVKKKMLVVANKIDVNEGEKRFKKLEKFL 300 Query: 301 ENKGIPLFKISALKQELGDLVAQVFALHQKTLAQFGANKFHLPMEMEKHYVFEQASETDH 360 + K I + KISALK+ELG+L+ +VF L+ KT++QFGANKF LPME+EKHYVF+ +E ++ Sbjct: 301 QKKSISVLKISALKKELGNLLDRVFELYNKTISQFGANKFSLPMELEKHYVFQNTNENNN 360 Query: 361 DPLNIERDALGRWHVECKRLHYWFDKIPQTTLDNIRRLGNKIKEVGIEDQLKVAGAKKGD 420 DPLNIE+D+L RW V CKRL YWFDKIPQTTLDNIRRLGNKIKE+GIEDQLK GAKKGD Sbjct: 361 DPLNIEKDSLNRWIVNCKRLRYWFDKIPQTTLDNIRRLGNKIKEIGIEDQLKSVGAKKGD 420 Query: 421 VIVFAGQEFVIND 433 +I F G EFVIND Sbjct: 421 IIFFDGCEFVIND 433 >ref|NP_072684.1| GTP-binding protein, putative [Mycoplasma genitalium G-37] Length = 367 Score = 76.3 bits (186), Expect = 5e-016, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 24/131 (18%) Query: 159 LANVGIVGFPNTGKSTLISKLSNAKPKIANYRFTTLVPVLGVVKHNDQSL---------- 208 + + GIVG PN GKSTL S ++N + +IANY F T+ P G+V +D+ L Sbjct: 1 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNTGIVNVSDERLDKLASLINPE 60 Query: 209 -------VFADIPGLIENASEGSGLGHYFLRHIERCEILIHLIS-------LDPVDHDDP 254 F DI GL++ AS+G GLG+ FL +I +++ H++ + + DP Sbjct: 61 KIVYTTFRFVDIAGLVKGASQGQGLGNQFLANIREVDLICHVVRCFQDKKIVHVNNTIDP 120 Query: 255 CQAYEQIMREL 265 +E I+ EL Sbjct: 121 VFDFEIIVNEL 131 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508303|ref|NP_110253.1| similar to NADP-dependent alcohol dehydrogenase [Mycoplasma pneumoniae M129] (351 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508304|ref|NP_110254.1| hypothetical protein MPN565 [Mycoplasma pneumoniae M129] (152 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073057.1| hypothetical protein MG384.1 [Mycoplasma genita... 89 2e-020 >ref|NP_073057.1| hypothetical protein MG384.1 [Mycoplasma genitalium G-37] Length = 149 Score = 89.4 bits (220), Expect = 2e-020, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 63/129 (48%) Query: 1 MGREVEPIFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEAIPFCYGIALMMISLFMSG 60 MG+E+EPIFD I E IPFCY A +I LF+SG Sbjct: 1 MGKEIEPIFDLVLLWFLFVPLLIYLFLAFFLFAFTKYIIWELIPFCYSTAFTLIVLFLSG 60 Query: 61 MFPQAWNVWXXXXXXXXXXXXXXXXXXXINKLTNLVLLRSRYAMVVAQGLVHTGKVKQQS 120 + P AWN W +NK+TN L+RS+YA+++A+ L+ TGK K ++ Sbjct: 61 IIPMAWNSWIILLRFFLVLITLMLSFFLLNKMTNFFLIRSKYAIIIAENLLKTGKSKTKN 120 Query: 121 QQAMSDIKT 129 +Q + I++ Sbjct: 121 RQKLQQIQS 129 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508305|ref|NP_110255.1| Glpq or Uplq glycerophosphoryl diester phosphodiesterase [Mycoplasma pneumoniae M129] (237 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073058.1| hypothetical protein MG385 [Mycoplasma genitali... 293 9e-082 ref|NP_072960.1| glycerophosphoryl diester phosphodiesterase, pu... 108 6e-026 >ref|NP_073058.1| hypothetical protein MG385 [Mycoplasma genitalium G-37] Length = 236 Score = 293 bits (751), Expect = 9e-082, Method: Compositional matrix adjust. Identities = 146/237 (61%), Positives = 180/237 (75%), Gaps = 1/237 (0%) Query: 1 MRKQFLIAHRGYSTIAPENTHLAFAAAQLFGFDGLWMEVQLTKDKQIVVTNLDNYKVGNK 60 MRKQFLIA+RGYS+IAPENT LAF AAQ+F FDG+W+++QLTKDKQIVVT+ +N+KV NK Sbjct: 1 MRKQFLIAYRGYSSIAPENTKLAFQAAQVFDFDGIWIDIQLTKDKQIVVTHKENFKVSNK 60 Query: 61 THKLSDINLVNLKKINLAKQFKVNVQEQTILTLKEVLMEFLTPFRFLLLFIKGXXXXXXX 120 L+ INLV+LKK+NLA +FK+ V Q I TLKEVL +F+ PF++LL+ IK Sbjct: 61 NLNLNQINLVDLKKVNLASEFKLKVTSQQIQTLKEVLTQFIQPFKYLLIHIKD-DKENNN 119 Query: 121 XXXXXXXXXXXGFELAKEKLILLSSHFSTIKYLNEKLKSFKTSFVFNSKKQLVHLTKDEI 180 F LAKEK+ILLSS+F IK +NE K FKT FV +KK L+ ++DE+ Sbjct: 120 SLLEQLNLLCKDFVLAKEKMILLSSNFHIIKLINETFKGFKTGFVIANKKALLVASRDEL 179 Query: 181 TQNCRFLAPNDSFYHKNCAELQSYGLPIILWVIKGLLRYQFYENDRFVKFQIAAQLY 237 + CRFL PN+SFYHKNC E+Q+ GLP+ILWVIKGLLRYQFYENDRFVKFQI AQ+Y Sbjct: 180 MRYCRFLVPNESFYHKNCKEIQNLGLPVILWVIKGLLRYQFYENDRFVKFQITAQIY 236 >ref|NP_072960.1| glycerophosphoryl diester phosphodiesterase, putative [Mycoplasma genitalium G-37] Length = 244 Score = 108 bits (269), Expect = 6e-026, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 7/235 (2%) Query: 3 KQFLIAHRGYSTIAPENTHLAFAAAQLFGFDGLWMEVQLTKDKQIVV----TNLDNYKVG 58 KQ L+AHRGYS IAPENT LAF A + FDG+ ++V LTKD+Q+V+ T L V Sbjct: 4 KQLLLAHRGYSFIAPENTKLAFDLAFEYCFDGIELDVHLTKDEQLVIIHDETTLRTALVN 63 Query: 59 NKTHKLSDINLVNLKKINLAKQFKVNVQEQTILTLKEVLMEFLTPFRFLLLFIKGXXXXX 118 + S LV+LK+ + + F + +Q Q+ILTLKE L +L F+ + + IK Sbjct: 64 KEVEFES---LVSLKRDDHSAFFHLKIQFQSILTLKEFLDLYLDKFKLINIEIKTDQKPY 120 Query: 119 XXXXXXXXXXXXXGFELAKEKLILLSSHFSTIKYLNEKLKSFKTSFVFNSKKQLVHLTKD 178 + A +K++ S +F +++ + + S+K F+F +KKQ ++ Sbjct: 121 LGIEKKLVDLVKGYGKKAIDKILFSSFNFESLQKVYDLDNSYKKGFLFWTKKQFETISTA 180 Query: 179 EITQNCRFLAPNDSFYHKNCAELQSYGLPIILWVIKGLLRYQFYENDRFVKFQIA 233 I + C+FL P Y K ++ LP+ LW + ++Q + D V QIA Sbjct: 181 RIQKICQFLHPWTKIYEKYPQMIKKLNLPLNLWTVNSQNKFQQFLADNHVYAQIA 235 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508306|ref|NP_110256.1| similar to cyto adherence proteins [Mycoplasma pneumoniae M129] (1036 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073059.1| protein P200 [Mycoplasma genitalium G-37] 321 2e-089 ref|NP_072862.1| dnaJ-like protein [Mycoplasma genitalium G-37] 61 7e-011 >ref|NP_073059.1| protein P200 [Mycoplasma genitalium G-37] Length = 1616 Score = 321 bits (822), Expect = 2e-089, Method: Compositional matrix adjust. Identities = 154/245 (62%), Positives = 185/245 (75%), Gaps = 18/245 (7%) Query: 790 ESEIESKFEAEVQSEPKVSLNSDFETKPEAQAEVTPETLEVEATSEAPELQPETEATKVV 849 +S +E+ E +V SEP+V + +FE E PET+ E +A E+QPE Sbjct: 1385 DSPVETIQEPQVSSEPEVVVQPNFE-------ERKPETVLEEP--QADEIQPEA------ 1429 Query: 850 DDVEEEQLDWELLIGNSNYGHYEPSGEWVWAGYFDDNQIWTPDASVEWARESDYTDLIGD 909 EEE LDWELL+GN++YGHYEP GEWVWAG+F D+Q W DA+V+WARE DY LIGD Sbjct: 1430 --SEEESLDWELLVGNNSYGHYEPDGEWVWAGFFGDDQKWNKDATVKWARERDYLPLIGD 1487 Query: 910 EIYGRYNRKGEWIWYGYYDETGEWVLVDEHYQNHQPRISEAPRFWEQLIGNEDYGYYEDN 969 E+YGRYN KGEWIWYG+YDE+G+WVLVDE ++N QPRI+EAP+FWE+LIGNE+YGYYEDN Sbjct: 1488 EVYGRYNNKGEWIWYGFYDESGDWVLVDEQWKNRQPRINEAPKFWEKLIGNEEYGYYEDN 1547 Query: 970 EWKWYDGEFDSEGNWLVFHSSNAEDAKNIDIAKDIPVFESFDVDSIDADEWLDQFSDSDA 1029 EW WYDGEFDSEGNWLVF S E+ N DI KDIP E +D+DSIDADEWL QFS DA Sbjct: 1548 EWNWYDGEFDSEGNWLVFQSEETENL-NEDITKDIPALEGYDIDSIDADEWLSQFSADDA 1606 Query: 1030 KEVFG 1034 K+VFG Sbjct: 1607 KDVFG 1611 Score = 242 bits (618), Expect = 1e-065, Method: Compositional matrix adjust. Identities = 126/258 (48%), Positives = 162/258 (62%), Gaps = 22/258 (8%) Query: 18 KKYLEQSKEKT-AKAKNKDVSIDDLLKKPFLEEIKTNVLKKNXXXXXXXXXXXXXXVKKQ 76 KKYLE + +K+ K K + +++L +PFL EIK N+LKK K Sbjct: 19 KKYLESANKKSVTKPKKEQDKVENLFDQPFLGEIKKNILKKTKSFNSKKKETVKSKSK-- 76 Query: 77 IVESSIDFFDEKKRGVFIVPPAGTSVINDDRDDNKAVEETV-----SKTAISQNQLAHYA 131 S IDFFDE KRGVFIVPP T +++ + K V TV S I++N+L Sbjct: 77 ---SPIDFFDETKRGVFIVPPE-TDILSRRELNQKTVVNTVPNQTSSYPTINENKLVELN 132 Query: 132 NSELVETEQFELKPVALEHNQVLTSTRHSQERESIFEKAQLFWQIFVGDVRFGFWKNHTW 191 N Q E K + + + T+ R E++ E +Q FW IFVGD ++GFWKNHTW Sbjct: 133 N-------QPETKVLETKKDSFTTTIR---EKKLNPEDSQAFWYIFVGDRKYGFWKNHTW 182 Query: 192 IWLGFFDQHQNWYYFEVVETVELPQEHTAFIKRKQIDSCFWKPLVGNPNYGYIQNNIWVW 251 +WLG+FDQ Q W YF+V+ETVE+PQEH AFIK++ D FW+PLVGNPNYG++QNN W+W Sbjct: 183 VWLGYFDQLQRWNYFKVIETVEVPQEHAAFIKQRPADIDFWRPLVGNPNYGFVQNNTWIW 242 Query: 252 KGFFDTKLNWIPDPVRFT 269 KGFFD KLNWIPDPVRFT Sbjct: 243 KGFFDKKLNWIPDPVRFT 260 >ref|NP_072862.1| dnaJ-like protein [Mycoplasma genitalium G-37] Length = 601 Score = 60.8 bits (146), Expect = 7e-011, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 14/79 (17%) Query: 630 ETESKATSEAQAELDWEALIGNSEYGYFDAEQNWIWTGYFDEDNKWVSXXXXXXXXXXXX 689 E SK E A DWEAL+G++ YGYFD +W W GYFDE KWV Sbjct: 155 ELRSKVPGEVTAS-DWEALVGDTRYGYFDETGDWSWKGYFDEQGKWVWNE---------- 203 Query: 690 VVLTADAETSELNTESDPS 708 D+ETSE++ E +P+ Sbjct: 204 ---PVDSETSEVSVEPEPT 219 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508307|ref|NP_110257.1| small GTPase ERA involved in regulating metabolism and cell division [Mycoplasma pneumoniae M129] (291 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073060.1| GTP-binding protein (era) [Mycoplasma genitaliu... 337 7e-095 >ref|NP_073060.1| GTP-binding protein (era) [Mycoplasma genitalium G-37] Length = 290 Score = 337 bits (864), Expect = 7e-095, Method: Compositional matrix adjust. Identities = 165/290 (56%), Positives = 217/290 (74%), Gaps = 2/290 (0%) Query: 1 MESIRIGVLGLTNAGKSTLVNQLHKANNLLVSPMNNTTLLAVSTNTITHEKQNITFIDVP 60 M+ +++GVLG TNAGKSTL+N LH ++L+VS MNNTTLL++ST I +NI FIDVP Sbjct: 1 MKVLKVGVLGPTNAGKSTLINFLHNDDSLMVSSMNNTTLLSISTEVINQANKNIVFIDVP 60 Query: 61 GFSEKRHSSYELISQEIRKALSGIDVLLLVVRSDXXXXXXXXXXXXXXXXRYRDLTRVLL 120 GF+EK+HS+YELI++EIRKALSGIDVLLLVVRSD RY++LTR+ L Sbjct: 61 GFTEKKHSNYELITKEIRKALSGIDVLLLVVRSDQNNKIEFLKTQLQQLKRYQNLTRIFL 120 Query: 121 INNFFDVVLQAEDKQAIVLDFKPQAVLETDLLHFDATSFWNQFNEVKLQANEFRKDVEFL 180 IN F L +K I+ +FKPQ +E +LL FD FW+ F +V+L+ N FRKD+ F+ Sbjct: 121 INKFHQKSLSEVNKAIILEEFKPQKTIEINLLKFDKNLFWSIFKQVELRYNIFRKDINFI 180 Query: 181 DADTDNFKILEALREQIIKYCSEEIPHVVRLEIVDKSFDQAKNLLKLHLSISVPKLSQKK 240 DA+ D+FKILE LREQII YC EIPH+ R+EI++KSF++ KNLLK+HL ISVPKLSQKK Sbjct: 181 DANNDDFKILEGLREQIIFYCKNEIPHIARIEIIEKSFNKEKNLLKIHLVISVPKLSQKK 240 Query: 241 IIIGRNAQMVKKIGMQMRQKLLEYYDCNVFVELFVRTYDPKQKKSPYGSL 290 IIIG+NA+M+K IG+ R+KLL ++DC++F+++FV+T KQK Y L Sbjct: 241 IIIGKNAEMIKAIGIATRKKLLNHFDCDIFIDIFVKT--EKQKLPVYSFL 288 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508308|ref|NP_110258.1| predicted metalloenzyme interacting with hemolysin [Mycoplasma pneumoniae M129] (108 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073061.1| hypothetical protein MG388 [Mycoplasma genitali... 162 1e-042 >ref|NP_073061.1| hypothetical protein MG388 [Mycoplasma genitalium G-37] Length = 101 Score = 162 bits (410), Expect = 1e-042, Method: Compositional matrix adjust. Identities = 74/99 (74%), Positives = 86/99 (86%) Query: 8 MKRLNRQFLNRKGVTDVISICYNENEAGFSPAIGEIFLCPKHIFKQAKQFGCTPWFLLTR 67 MK+LN+QFL R+G TDVIS+CYNE E GFS AIGEIFLCPK+IFK+AK+ GC WFLLTR Sbjct: 1 MKKLNKQFLKRRGCTDVISLCYNETETGFSLAIGEIFLCPKYIFKKAKEIGCNNWFLLTR 60 Query: 68 NLIHGLLHLFEFDHEQSLAFESVTMFFQDEIHETVLKLW 106 LIHG+LHLFEF+HE+S AFESVTMFFQD IHE +L +W Sbjct: 61 CLIHGILHLFEFNHEESEAFESVTMFFQDAIHEEILSVW 99 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508309|ref|NP_110259.1| hypothetical protein MPN570 [Mycoplasma pneumoniae M129] (129 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073062.1| hypothetical protein MG389 [Mycoplasma genitali... 124 3e-031 >ref|NP_073062.1| hypothetical protein MG389 [Mycoplasma genitalium G-37] Length = 127 Score = 124 bits (311), Expect = 3e-031, Method: Compositional matrix adjust. Identities = 68/129 (52%), Positives = 83/129 (64%), Gaps = 2/129 (1%) Query: 1 MKQKIIGXXXXXXXXXXXXXXXXXTVKVQRYLTTSLWAKLSEQTFLVFKNEQDEAQFNQV 60 MKQKI+G +VKV++YL +LW +Q FL+FKNE+DE FN V Sbjct: 1 MKQKILGITIAFIILLLTTVAILFSVKVKQYLNVNLWTT-QQQNFLMFKNEKDENLFNNV 59 Query: 61 SWTNFQAETTKKEDKKAFRLYKKKISXXXXXXXXXXXXFQAVNLSINLKQGWYNITILLP 120 SWTNFQAETT+K KKAFRLYKKKIS + V+LS+ L+QGWYNITI+LP Sbjct: 60 SWTNFQAETTEKSAKKAFRLYKKKISTSEISSELNKNLVK-VDLSVTLEQGWYNITIMLP 118 Query: 121 SKALFETVF 129 SK LFE +F Sbjct: 119 SKDLFEVIF 127 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508310|ref|NP_110260.1| similar to hemolysin ABC-type exporter [Mycoplasma pneumoniae M129] (660 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073063.1| ABC transporter, ATP-binding protein [Mycoplasm... 798 0.0 >ref|NP_073063.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 660 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/660 (61%), Positives = 484/660 (73%) Query: 1 MKIIYQEQPNECGICVLGMLANELHEDKYAHDELLEQINLPASGLSFFELETYGKKFGLE 60 MKIIYQEQ NECGICV+GMLAN +H++KY HDELLEQINLP +GLS FE+E+YGKKFGLE Sbjct: 1 MKIIYQEQQNECGICVIGMLANAIHDEKYVHDELLEQINLPPNGLSLFEMESYGKKFGLE 60 Query: 61 IASYQLTLEELKQLEGKYXXXXXXXXXXXXXXXQDNLWEVFDPAKGKYLLNDEELKKQWT 120 I SYQLT +ELK+L+ K+ +N WEV+DPAKGKYLL DE+L+K WT Sbjct: 61 INSYQLTFQELKELDSKFIIVHFKDHFVIVKNKHENSWEVYDPAKGKYLLTDEKLEKLWT 120 Query: 121 GYAATVQKSFKEIPPINKRNFFKHFFDLNXXXXXXXXXXXXXXXSTLLATASKTMIANTV 180 GYAATV K+FKEIPP+NK NFF +FFD N STLLATAS+T+I NTV Sbjct: 121 GYAATVAKAFKEIPPVNKSNFFSNFFDFNLVTFYVFIELIIIGISTLLATASRTIITNTV 180 Query: 181 DFGTSVNIXXXXXXXXXXXXXXXXXXXXXQMVRNVLFWKQYRGYLGWIMQTLQTKSFVYF 240 DFGT+VN+ Q++RN LFWKQYRGYLGWI+Q+LQ KSFVYF Sbjct: 181 DFGTAVNLVVLVVYFSCLKGLNLLLQVILQLIRNFLFWKQYRGYLGWIIQSLQQKSFVYF 240 Query: 241 SNKSPNQLTERQFYLKEVLSFFNVHIPNLIISCTVALIIGTLIGINQMEFLWIAIVQIVV 300 SNKSPNQL ERQFYLKEVLSFFN +IPNLIISC VALIIG LIGINQ+EFL IAI QIVV Sbjct: 241 SNKSPNQLIERQFYLKEVLSFFNFYIPNLIISCVVALIIGVLIGINQLEFLLIAIAQIVV 300 Query: 301 NCAIFLYDFFFTKRITKQAIPQMELQNKVSLQLDGNLRDEQNGKRFNYLMMQLRKALIKN 360 N +F YDFFFTK+ITK+ IP +ELQNK+SLQLD NLR+EQN KRFN+LM+ RKAL++N Sbjct: 301 NAGLFCYDFFFTKKITKKEIPYVELQNKISLQLDENLREEQNKKRFNFLMLNFRKALLQN 360 Query: 361 QNISNQKEVNHLASDGVKSFAQQVFDFXXXXXXXXXXXEQRYTLAFLFYIFSIQALFSAY 420 QNI+NQKE+N L + +KSF QQ FDF EQRY L+FLFY+F IQ+LFS Y Sbjct: 361 QNINNQKEINRLTIENIKSFFQQGFDFAILGLGVIGIIEQRYQLSFLFYVFGIQSLFSTY 420 Query: 421 ATRIIQFGAAVNLYQFCKDKLVTLFEDKVNDCNFKVSWKCPKVINLNNCSITXXXXXXXX 480 ATRI+QFGAA+N+Y +C++KLV LF + D KV+W+CP I+L N S+T Sbjct: 421 ATRIVQFGAAINIYHYCREKLVNLFIETKKDEGIKVNWQCPDEISLENLSVTLNQHVDLA 480 Query: 481 XXXXXXXXGMVISGENGSGKSTLLKILTGRGLSYQGQIKLDELDLKDFSASQLFHNVYYL 540 VI G+NGSGKST LKILTGRG Y G IK + +DLK S QLF NVYYL Sbjct: 481 NLSLKIKNETVIFGQNGSGKSTFLKILTGRGFEYTGNIKFNNVDLKRCSKEQLFENVYYL 540 Query: 541 TGQLTAYNDITDFGYSEALLNCKNPQVYQLLADTGIHNQIKLSSGQKQILQLFLLQNLKD 600 GQ + DFG+SEAL N +NP +YQLL D G+ NQ KLSSGQKQILQLFLL N+K+ Sbjct: 541 KGQNLMQTEANDFGFSEALFNNQNPHIYQLLFDAGVQNQTKLSSGQKQILQLFLLSNIKN 600 Query: 601 KVILLDETLNAIATELKPRVYQLLIKPLTYNNFVLMVEHDLRFVNSEQDLINLSPYLQQT 660 KVILLDE +NAIA E+K RVYQLL+KPLT NNFV++VEHDL F + Q+ INL+ YL+ + Sbjct: 601 KVILLDECMNAIAPEIKNRVYQLLVKPLTLNNFVVLVEHDLSFASEAQNKINLTNYLRNS 660 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508311|ref|NP_110261.1| similar to CYTOSOL AMINOPEPTIDASE (LEUCINE AMINOPEPTIDASE) (LAP)) [Mycoplasma pneumoniae M129] (445 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073064.1| cytosol aminopeptidase [Mycoplasma genitalium G... 669 0.0 >ref|NP_073064.1| cytosol aminopeptidase [Mycoplasma genitalium G-37] Length = 447 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/451 (73%), Positives = 370/451 (82%), Gaps = 10/451 (2%) Query: 1 MKLNKLF--DSKTVVFKKSDKYG-KSDCCKTKCVEGQIEFGVKIPTDFPAFNRALVTFLK 57 M++NK F DS TVVF S YG K + +EFGV +PTDFPAFNRALV FLK Sbjct: 1 MRINKPFSDDSNTVVFVSSKTYGVKEEAAHNP----NVEFGVVLPTDFPAFNRALVQFLK 56 Query: 58 TQKNQLNVDLDSFVELYKA-ENL-CYKTALKVVVASITFCETTPFTMKTEPQKNVEVAVK 115 +K +LN++LDS +ELYK EN C+ TA+K V+ S+TFCETTPFTMKT+P+KNVEVAV+ Sbjct: 57 RKKTKLNINLDSLIELYKKNENSGCFHTAIKTVITSVTFCETTPFTMKTKPEKNVEVAVQ 116 Query: 116 CDSEHTSLIKEYEVVGNYVNMARQLQDTPSDQLYPEEFVKRFEKAATGLGVKITVLKQAD 175 C E+ +L+KEYE VG YVN+AR+LQDTPSD LY E FVK FEKAA+ L VKI VLKQ+D Sbjct: 117 CAVEYHNLVKEYETVGEYVNLARELQDTPSDLLYSEVFVKHFEKAASKLPVKIKVLKQSD 176 Query: 176 LIKKKMGLLLGVNKGSEREARLLVISYNNNKKSSETLALVGKGITYDSGGMNIKTGDYMR 235 LIKKKMGLLLGVN+GSEREARLLVISY NK S E LA VGKGITYDSGGMNIKTGDYMR Sbjct: 177 LIKKKMGLLLGVNQGSEREARLLVISYQANKNSKEKLAFVGKGITYDSGGMNIKTGDYMR 236 Query: 236 GMKYDMSGAAIVCSTVLXXXXXXXXXXXXXXXXXXENLPGPHAQRPDDIQTAYNGKTVEI 295 GMKYDMSGAAIVCSTVL ENLPG AQRPDDI+ AYNGK+VEI Sbjct: 237 GMKYDMSGAAIVCSTVLALAKNKVKTNVVAVAALTENLPGAKAQRPDDIKIAYNGKSVEI 296 Query: 296 DNTDAEGRLVLADAISYAAKDLKATQIIDVATLTGLMSYILSTTYTGIFSTCDMAWDAFK 355 DNTDAEGRLVLADAI+YAAKDL AT IIDVATLTGLMSYILSTTYTGIFSTCD W++FK Sbjct: 297 DNTDAEGRLVLADAITYAAKDLAATHIIDVATLTGLMSYILSTTYTGIFSTCDHQWESFK 356 Query: 356 KAACCAGEPVWRLPMHPDYLKPLE-SKLADLQNSTSVKGAGSSRAACFLAEFREGVPLIH 414 KAAC AGEPVWRLPMHPDYLKPL+ +KLADLQNSTS +GAGSSRAACFLAEFREGV LIH Sbjct: 357 KAACSAGEPVWRLPMHPDYLKPLQLTKLADLQNSTSARGAGSSRAACFLAEFREGVSLIH 416 Query: 415 CDIASTASIQDLGQGVLVRTLYERAAQQAKE 445 CDIASTASI++LGQGVLVRTLYERA+Q A + Sbjct: 417 CDIASTASIENLGQGVLVRTLYERASQLANK 447 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508312|ref|NP_110262.1| heat shock protein GroEL [Mycoplasma pneumoniae M129] (543 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073065.1| heat shock protein (groEL) [Mycoplasma genitali... 929 0.0 >ref|NP_073065.1| heat shock protein (groEL) [Mycoplasma genitalium G-37] Length = 543 Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/543 (84%), Positives = 515/543 (94%) Query: 1 MAKELVFGKNARNKLLAGINKLADAVKVTVGPKGQNVILGRKFSNPLITNDGVTIAKEIE 60 MAKEL+FGK+AR +LL GINK+A+AVKVTVGPKGQNVIL RKF+NPLITNDGVTIAKEIE Sbjct: 1 MAKELIFGKDARTRLLQGINKIANAVKVTVGPKGQNVILERKFANPLITNDGVTIAKEIE 60 Query: 61 LTDPLENIGAKVISVAAVSTNDIAGDGTTTATILAQEMTNRGVEAVNNGANPVNVRRGIE 120 L+DP+ENIGAKVISVAAVSTNDIAGDGTTTATILAQEMTNRG+E +N GANPVN+RRGIE Sbjct: 61 LSDPVENIGAKVISVAAVSTNDIAGDGTTTATILAQEMTNRGIEIINKGANPVNIRRGIE 120 Query: 121 DASQLIITELDKRSKKINTNEEIEQVAAISSGSKEIGKLIAQAMALVGKNGVITTDDAKT 180 DAS LII EL+K SKKINTNEEIEQVAAISSGSKEIGKLIAQAMALVGKNGVITTDDAKT Sbjct: 121 DASLLIIKELEKYSKKINTNEEIEQVAAISSGSKEIGKLIAQAMALVGKNGVITTDDAKT 180 Query: 181 INTTLETTEGIEFKGTYASPYMVSDQEKMEVVLDQPKILVSAMKINTIKEILPLLEGSME 240 INTTLETTEGIEFKGTYASPYMVSDQEKMEVVL+QPKILVS++KINTIKEILPLLEGS+E Sbjct: 181 INTTLETTEGIEFKGTYASPYMVSDQEKMEVVLEQPKILVSSLKINTIKEILPLLEGSVE 240 Query: 241 NGNPLLIVAPDFAEEVVTTLAVNKLRGTINVVAVKCNEYGERQKAALEDLAISTGTLAYN 300 NGNPLLIVAPDFAEEVVTTLAVNKLRGTINVVAVKCNEYGERQKAALEDLAIS+GTLAYN Sbjct: 241 NGNPLLIVAPDFAEEVVTTLAVNKLRGTINVVAVKCNEYGERQKAALEDLAISSGTLAYN 300 Query: 301 NELGGGFKDVTVNHLGEARRVQVAKEKTTVIGGKGSKETIQKHLDLLNGRLKQTTEKYDT 360 E+ GFKDVTV++LG+AR+VQ+AK KTTVIGGKG+K+ I+KH++LLNGRLKQTT+KYD+ Sbjct: 301 TEINSGFKDVTVDNLGDARKVQIAKGKTTVIGGKGNKDKIKKHVELLNGRLKQTTDKYDS 360 Query: 361 DLLKERIAHLSQGVAVVRVGGATELAQKELKLRIEDALNSTKAAVEEGIISGGGIALLNV 420 DL+KERIA+LSQGVAV+RVGGATELAQKELKLRIEDALNSTKAAVEEGII+GGG+ LLN Sbjct: 361 DLIKERIAYLSQGVAVIRVGGATELAQKELKLRIEDALNSTKAAVEEGIIAGGGVGLLNA 420 Query: 421 STILNDSKLADKYKAETSAENLKEILVGYEIVRKSLEAPVRQIIENSGVNPVKVFAELRS 480 S +L +SKL ++Y+ ETS EN+KEIL+G+EIV+KSLEAP RQII+NSGV+PVK+ +EL++ Sbjct: 421 SCVLTNSKLKERYENETSVENIKEILLGFEIVQKSLEAPARQIIQNSGVDPVKILSELKN 480 Query: 481 EADGVGFDAETKKKVDMIRSGIIDPTKVTKTALEKAASVASSLITTSVAVYDIKENKEGS 540 E GVGFDAETKKKVDMI +GIIDPTKVTKTALEKAASVASSLITT+VAVYD+KE K+ S Sbjct: 481 EKTGVGFDAETKKKVDMIANGIIDPTKVTKTALEKAASVASSLITTNVAVYDVKERKDNS 540 Query: 541 FQE 543 F E Sbjct: 541 FSE 543 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508313|ref|NP_110263.1| heat shock protein GroES [Mycoplasma pneumoniae M129] (116 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073066.1| heat shock protein (groES) [Mycoplasma genitali... 163 6e-043 >ref|NP_073066.1| heat shock protein (groES) [Mycoplasma genitalium G-37] Length = 110 Score = 163 bits (412), Expect = 6e-043, Method: Compositional matrix adjust. Identities = 81/101 (80%), Positives = 92/101 (91%), Gaps = 1/101 (0%) Query: 1 MKITPIHDNILVSLVESNKEEVSQKGIITALANPDKNES-AHKGTVVALGAGPAYGKSEK 59 M ITPIHDN+LVSLVESNKEEVS+KGIIT+LA+ DK+++ A+KG V+ALGAGPAYGK+EK Sbjct: 1 MNITPIHDNVLVSLVESNKEEVSKKGIITSLASNDKSDANANKGIVIALGAGPAYGKTEK 60 Query: 60 PKYAFGIGDTIYFKEYSGISFEEEGTKYKIISLEDVLAFEK 100 PKYAFG+GD IYFKEYSGISFE EG KYKII EDVLAFEK Sbjct: 61 PKYAFGVGDIIYFKEYSGISFENEGNKYKIIGFEDVLAFEK 101 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508314|ref|NP_110264.1| hypothetical protein MPN575 [Mycoplasma pneumoniae M129] (128 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508315|ref|NP_110265.1| serine hydroxymethyltransferase [Mycoplasma pneumoniae M129] (406 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073067.1| serine hydroxymethyltransferase (glyA) [Mycopla... 661 0.0 >ref|NP_073067.1| serine hydroxymethyltransferase (glyA) [Mycoplasma genitalium G-37] Length = 406 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/406 (75%), Positives = 353/406 (86%) Query: 1 MEPKIRRILNKELQRQRDCICLIASENYVSRDILEVTGSILTNKYAEGYPTRRFYEGCEV 60 M K+R +LNKELQRQR+ ICLIASENYVS+DIL VTGS+LTNKYAEGYP++RFY+GCEV Sbjct: 1 MFSKVRLLLNKELQRQRENICLIASENYVSQDILAVTGSVLTNKYAEGYPSKRFYQGCEV 60 Query: 61 VDESESLAINTCKELFGAKWANVQPHSGSSANYAVYLALLKPGDAILGLDLNCGGHLTHG 120 VDESE+LAI +CK LFGA+WANVQPHSGSSANYAVYLALLKPGD ILGLDLNCGGHLTHG Sbjct: 61 VDESENLAIESCKTLFGAQWANVQPHSGSSANYAVYLALLKPGDTILGLDLNCGGHLTHG 120 Query: 121 NKFNFSGKQYQPYSYTINPETEMLDYDEVLRVAREVKPKLIICGFSNYSRTVDFERFSAI 180 + NFSGKQYQ +Y+++ ETE LDYD +L++A E KPKLIICGFSNYSRTVDF++FSAI Sbjct: 121 SPVNFSGKQYQAVTYSLDFETETLDYDAILQIALEHKPKLIICGFSNYSRTVDFKKFSAI 180 Query: 181 AKEVGAYLLADIAHIAGLVAAGLHPNPLPYTDVVTSTTHKTLRGPRGGLIMSNNEAIIRK 240 AK+V AYLLADIAHIAG +AAGLH NPLP+ DVVTSTTHKTLRGPRGG+IMSNN+AII+K Sbjct: 181 AKQVNAYLLADIAHIAGFIAAGLHQNPLPFVDVVTSTTHKTLRGPRGGIIMSNNQAIIKK 240 Query: 241 LDSGVFPGCQGGPLQHVIAAKYVCFKEALQPKYKQYIQNVKTNAASMASWFKQQGYRVIS 300 LDSGVFPGCQGGPLQHVIAAKYVCFKEAL PK+KQY+Q VK NA +MA+WF +QGYRV+S Sbjct: 241 LDSGVFPGCQGGPLQHVIAAKYVCFKEALNPKFKQYMQQVKDNALAMANWFLKQGYRVVS 300 Query: 301 NGTDTHLFSLDVGKGKDVSQWLQQANIVLNMNTVPFDKNPAINPSGIRIGTPAMTTRGFK 360 GT+THLFSL VG GKDV+ WLQ+ANIVLNMNT+PF+ A +PSGIR+GTPAMTTRGFK Sbjct: 301 KGTETHLFSLVVGNGKDVALWLQKANIVLNMNTIPFETKSAFSPSGIRLGTPAMTTRGFK 360 Query: 361 EKHFLYVAALIDKIIKSDGNXXXXXXXXXXXXXXXERFPLYKGLEY 406 F++VA+LIDK+IKS+GN +RFPLYKGL Y Sbjct: 361 TNDFIFVASLIDKVIKSNGNQKVISQTKTAVLNLLKRFPLYKGLAY 406 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508316|ref|NP_110266.1| hypothetical protein MPN577 [Mycoplasma pneumoniae M129] (346 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 211 6e-057 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 161 9e-042 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 149 3e-038 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 211 bits (538), Expect = 6e-057, Method: Compositional matrix adjust. Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 25/361 (6%) Query: 1 MQLANNKWRVFGTGWLIDWKKPKRTHNLSEPFYLYLATNLHIAVALSNPKDYAPFNKASI 60 + A+NK +GTGWLIDWK + ++PF +YLATNLH+ AL N DY P+NK S Sbjct: 61 LNFASNKRNTYGTGWLIDWKGDENNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSN 120 Query: 61 GNS-----LTTVFCLGKYINPQLFKLRTDVSN---AFVSIQTSTIPKTAFVARDFVPLQN 112 + +T F +GKY P +F + N AFVSIQTSTIPKTA+ A +FV Q Sbjct: 121 NQAFNSEEITRFFSIGKYTYPSIFSELNFIINAREAFVSIQTSTIPKTAYAAVNFVETQG 180 Query: 113 RGNQWVAPVRASEDDPALAKSYLDFAIIEVPLFLHNQMDKQIYDHFMRPAINTYERLGNS 172 + + S D+ Y DFA+IE+PLFL N D Q+++ F++PAI TY++LGNS Sbjct: 181 EDESYTDSL--STDNK--RDIYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNS 236 Query: 173 VGIFAYQPMASFKRDSYFALGYPQVESNIAALNLNQ-TEVKPTRPEDVA-QVTFKEPWSV 230 F + + K D+++ LGYP VES+I AL LNQ + + E Q K+ ++ Sbjct: 237 S--FEKKQLDQHKNDNFYMLGYPLVESSIDALILNQRRQYNNSYTEKYTPQTLTKDQRTI 294 Query: 231 DHHREIPXXXXXXXXXXXXXHF-------SGSKLSWPFDHTKSFKIKNKWLGQNYQMYGH 283 D RE+P S S+ F FK+ + ++Y+ YG Sbjct: 295 DLSREVPTLIQNKTENSTGSQLLVNQSLSSTSEGIIEFIKLPEFKL--NYHNKSYRQYGR 352 Query: 284 GLGIDQVNLRKGTSSSLVINQKRQIVGIYFATVITNPKKAVRNDVGLVQMLRFQGEGNSL 343 G + N R G+S +L++N ++QI GIYF + ++ +++G+ Q+LR + N+ Sbjct: 353 GFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGVGQILRVPQKNNTR 412 Query: 344 N 344 N Sbjct: 413 N 413 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 161 bits (407), Expect = 9e-042, Method: Compositional matrix adjust. Identities = 115/357 (32%), Positives = 175/357 (49%), Gaps = 50/357 (14%) Query: 11 FGTGWLIDWKKPKRTHNLSEPFYLYLATNLHIAVALSNPKDYAPFNKASIGNSL-----T 65 +GTGWLIDWK + T F+ Y+ATNLH+A L N D+ P++K T Sbjct: 112 YGTGWLIDWKGDENTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYEST 171 Query: 66 TVFCLGKYINP-------QLFKL-RTDVSNAFVSIQTSTIPKTAFVARDFVPLQNRGNQW 117 F +GKY N Q KL + V+++ +SIQTS IPKTA+ A +F+ +G Sbjct: 172 VYFSIGKYTNKTDITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFL----KGVNS 227 Query: 118 VAPVRASEDDPALAKSYLDFAIIEVPLFLHNQMDKQIYDHFMRPAINTYERLGNSVGIFA 177 + PV Y DFA+IE+ L L N D QI++ F++PAINTY+ LG+S IF Sbjct: 228 IKPV------------YADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFE 275 Query: 178 YQPMASFKRDSYFALGYPQVESNIAALNLNQTEVKPTRPEDV---AQVTFKEPWSVDHHR 234 + + S++ LGYP +E L + + + R + +Q+ K + V + Sbjct: 276 TKDLEQHWNHSHYLLGYPVLERGYDQNRLLEQKEEFARTHNFNQKSQLWSKNTYLVSTAK 335 Query: 235 EIPXXXXXXXXXXXXXHFSGSKLSW---------------PFDHTKSFKIKNKWLGQNYQ 279 EIP SK + F + K+FK+ K+ + YQ Sbjct: 336 EIPVITKNARKDGQIGSEIFSKKTQDSHVDKVIKHEKGIVTFQNFKNFKL--KYHDKEYQ 393 Query: 280 MYGHGLGIDQVNLRKGTSSSLVINQKRQIVGIYFATV-ITNPKKAVRNDVGLVQMLR 335 YG+GL +D NL G+S S + N ++I IYF + + K ++++G+ Q+LR Sbjct: 394 QYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGMSQLLR 450 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 149 bits (377), Expect = 3e-038, Method: Compositional matrix adjust. Identities = 121/406 (29%), Positives = 187/406 (46%), Gaps = 69/406 (16%) Query: 1 MQLANNKWRVFGTGWLIDWK--KPKRTHNLS---------------------EPFYLYLA 37 + N K + FGTGWLIDWK + K + L+ + F Y+A Sbjct: 65 LNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKEKQDDKLFIAYIA 124 Query: 38 TNLHIAVALSNPKDYAPFNKASIGNSL-----TTVFCLGKYINPQL--------FKLRTD 84 TNLH+ L N DY P+NK G S T F LG++ NP++ ++++T Sbjct: 125 TNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKINSKPEEMNYQVQTR 184 Query: 85 V-SNAFVSIQTSTIPKTAF-----VARDFVPLQNRGNQWVAPVRASEDDPAL--AKSYLD 136 + +A V IQTST+PKTA+ + D+ + W +++ + P KSY D Sbjct: 185 LKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFWTKK-QSTANFPRTRTLKSYAD 243 Query: 137 FAIIEVPLFLHNQMDKQIYDHFMRPAINTYERLGNSVGIFAYQPMASFKRDSYFALGYPQ 196 FA++EVPLFL N D +IY ++RPA+ Y+ LG+ IFA P A + ++Y+ LGYP Sbjct: 244 FAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAEYINNTYYLLGYPV 303 Query: 197 VESNIAALNLNQTEV-KPTRPEDVAQVTFKEPWS-----VDHHREIPXXXXXXXXXXXXX 250 +N L Q E K ++ V + K+P V+ +P Sbjct: 304 TNNNKYQFILGQDEKWKFSQQTSVLKHYQKQPLQQRTVYVERDDGLP---TLTFNEDKLT 360 Query: 251 HFSGSKLSWPFDHTKSFKIKNKWLGQ-------------NYQMYGHGLGIDQVNLRKGTS 297 H G+ L D + N + Y+++G+G ++ N G+S Sbjct: 361 HVQGTDL-INVDQITDTNLGNGLINYAGLSRFTLSYHNVEYKLFGYGTILNNTNFPGGSS 419 Query: 298 SSLVINQKRQIVGIYFATVITNPKKAVRN-DVGLVQMLRFQGEGNS 342 S V N+++Q+ IYF ++I RN ++GL Q+LR NS Sbjct: 420 GSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRTYNTNNS 465 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508317|ref|NP_110267.1| hypothetical protein MPN578 [Mycoplasma pneumoniae M129] (100 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508318|ref|NP_110268.1| hypothetical protein MPN579 [Mycoplasma pneumoniae M129] (109 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508319|ref|NP_110269.1| hypothetical protein MPN580 [Mycoplasma pneumoniae M129] (140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 97 8e-023 ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 93 9e-022 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 69 2e-014 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 96.7 bits (239), Expect = 8e-023, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 8/131 (6%) Query: 11 KFNQQTYEQYGKGLALNDLYIRRGASGSLVFNQDQQISGIFFAVAS---HSDPKPGEKTL 67 K++ + Y+QYG GL L+D + G+SGS +FN +Q+I+ I+F V +S + Sbjct: 386 KYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGM 445 Query: 68 VQLLRLPVDEST-----TATVKDNCVPYDLIFGNRNTTHYYTQFAKQHHTHLYEQIQQSN 122 QLLR ES T +D YDLIFG+ NT +Y QFAK+H+THLY+QI+ S Sbjct: 446 SQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHLYDQIKSSE 505 Query: 123 DQLIKFIDRKN 133 + K++D+ N Sbjct: 506 KEEFKYVDKNN 516 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 93.2 bits (230), Expect = 9e-022, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 5/132 (3%) Query: 12 FNQQTYEQYGKGLALNDLYIRRGASGSLVFNQDQQISGIFFAVASHSDPKP--GEKTLVQ 69 ++ ++Y QYG+G AL + R G+SG+L+ N +QI+GI+F V + + Q Sbjct: 342 YHNKSYRQYGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGVGQ 401 Query: 70 LLRLPVDEST-TATVKDNCVPYDLIFGNRNTTHYYTQFAKQHHTHLYEQIQQSNDQLIKF 128 +LR+P +T ++ N YDLIFG+ NTT++Y +FA+Q++THLY+ I S D +K+ Sbjct: 402 ILRVPQKNNTRNRSIATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDTKLKY 461 Query: 129 ID--RKNVSCSM 138 ++ K V S+ Sbjct: 462 VNTVEKTVKASI 473 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 69.3 bits (168), Expect = 2e-014, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 6/119 (5%) Query: 17 YEQYGKGLALNDLYIRRGASGSLVFNQDQQISGIFFAV---ASHSDPKPGEKTLVQLLRL 73 Y+ +G G LN+ G+SGS VFN+++Q++ I+F + + + L Q+LR Sbjct: 400 YKLFGYGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRT 459 Query: 74 PVDESTTATVKDNCVPYDLIFGNRNTTHYYTQFAKQHHTHLYEQIQQSNDQLIKFIDRK 132 +T + YDLIFG++NT +Y QFAK+ THL+ +IQ S + I F K Sbjct: 460 ---YNTNNSKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSSISFYKDK 515 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508320|ref|NP_110270.1| hypothetical protein MPN581 [Mycoplasma pneumoniae M129] (265 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 209 2e-056 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 162 2e-042 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 158 5e-041 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 209 bits (532), Expect = 2e-056, Method: Compositional matrix adjust. Identities = 111/243 (45%), Positives = 154/243 (63%), Gaps = 15/243 (6%) Query: 8 RAEYQTKWATNTVPKPTDFYHQLYNLSFSLTLTSQRWNTYGTGWLIDWKDTSTNENK--- 64 R ++T++ N++P +D YH Y+L+FSL S + NTYGTGWLIDWK N K Sbjct: 32 RRGFRTQFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGDENNPEKNDP 91 Query: 65 FTAYLATNFHVADTLKNPHDYPPY-----NQVDNTQDLTTSFRIGKYTDPSLFG---LYT 116 F YLATN HV D L+N +DY PY NQ N++++T F IGKYT PS+F Sbjct: 92 FKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPSIFSELNFII 151 Query: 117 NVKHAFVDVQLAALPKMAYAAVDFVDYRFDNKHWKSLNEICPEVGLKPYADFAVLEVPLY 176 N + AFV +Q + +PK AYAAV+FV+ + +++ + + + + YADFAV+E+PL+ Sbjct: 152 NAREAFVSIQTSTIPKTAYAAVNFVETQGEDESY--TDSLSTDNKRDIYADFAVIEIPLF 209 Query: 177 LNNKLDYQVWENFIKPAIATYKALGDSTNLFASTSSSDLQNDTYFALGYPLLESNIDAIH 236 L N DYQV+ FIKPAI TYK LG+S+ F +ND ++ LGYPL+ES+IDA+ Sbjct: 210 LTNHRDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQHKNDNFYMLGYPLVESSIDALI 267 Query: 237 FNQ 239 NQ Sbjct: 268 LNQ 270 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 162 bits (411), Expect = 2e-042, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 144/250 (57%), Gaps = 32/250 (12%) Query: 2 QLEKVPRAEYQTKWATNT--VPKPTDFYHQLYNLSFSLTLTSQRWNTYGTGWLIDWK--- 56 Q KV + Y + NT +P+ +D Y + Y+L+F+L TS ++YGTGWLIDWK Sbjct: 65 QQPKVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKGDE 124 Query: 57 DTSTNENKFTAYLATNFHVADTLKNPHDYPPYNQVDNTQDL-----TTSFRIGKYTDPS- 110 +T+ + F AY+ATN HVAD L+N D+ PY++ D+ ++ T F IGKYT+ + Sbjct: 125 NTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTD 184 Query: 111 LFGLYTN-------VKHAFVDVQLAALPKMAYAAVDFVDYRFDNKHWKSLNEICPEVGLK 163 + LY V + + +Q + +PK AY A +F+ K +N I P Sbjct: 185 ITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFL---------KGVNSIKP----- 230 Query: 164 PYADFAVLEVPLYLNNKLDYQVWENFIKPAIATYKALGDSTNLFASTSSSDLQNDTYFAL 223 YADFAV+E+ L L N D+Q++ FIKPAI TYK+LGDSTN+F + N +++ L Sbjct: 231 VYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLL 290 Query: 224 GYPLLESNID 233 GYP+LE D Sbjct: 291 GYPVLERGYD 300 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 158 bits (400), Expect = 5e-041, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 144/265 (54%), Gaps = 49/265 (18%) Query: 15 WATNTVPKPTDFYHQLYNLSFSLTLTSQRWNTYGTGWLIDWKDTST-------------- 60 + NTVPK +FY + Y+L+F+L T+Q+ +GTGWLIDWK T Sbjct: 44 YVNNTVPK-NNFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSII 102 Query: 61 ------------NENKFTAYLATNFHVADTLKNPHDYPPYNQVDNTQDL-----TTSFRI 103 ++ F AY+ATN H+ D LKN HDY PYN+ N T SF + Sbjct: 103 SSVSNHSLKEKQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLL 162 Query: 104 GKYTDPSL--------FGLYTNVKH-AFVDVQLAALPKMAYAAVDFVDYRF-----DNKH 149 G++ +P + + + T +K A V +Q + LPK AYA +D +++ + ++ Sbjct: 163 GRFANPKINSKPEEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGF 222 Query: 150 W---KSLNEICPEVGLKPYADFAVLEVPLYLNNKLDYQVWENFIKPAIATYKALGDSTNL 206 W +S LK YADFAVLEVPL+L+N D ++++ +I+PA+ YK LGD N+ Sbjct: 223 WTKKQSTANFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENI 282 Query: 207 FASTSSSDLQNDTYFALGYPLLESN 231 FA T ++ N+TY+ LGYP+ +N Sbjct: 283 FAKTPYAEYINNTYYLLGYPVTNNN 307 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508321|ref|NP_110271.1| hypothetical protein MPN582 [Mycoplasma pneumoniae M129] (439 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 205 7e-055 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 181 1e-047 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 162 5e-042 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 205 bits (522), Expect = 7e-055, Method: Compositional matrix adjust. Identities = 156/454 (34%), Positives = 224/454 (49%), Gaps = 70/454 (15%) Query: 22 ACSAFRKPDKFEGYY----INNIPGSAEIDHANYDLTFFLGFFNRIEKTEKDKSQIDFGS 77 CS F +P G+ IN+IP ++ H NYDLTF L F + T Sbjct: 23 GCS-FVRPQFRRGFRTQFKINSIPTVSDPYHINYDLTFSLNFASNKRNT----------- 70 Query: 78 IHGTGWLIXXXXXXXXXXXXXXFTVYLATNLHVIQALKNREDHPPYNQFDINFVRTVD-- 135 +GTGWLI F VYLATNLHVI AL+N D+ PYN+ N + Sbjct: 71 -YGTGWLIDWKGDENNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEI 129 Query: 136 ---FRIGKYTDVKQFVAPSKLG-LPNSTQAFVAAQPTVLPKTAFIAHDFVNYTLSKDQKN 191 F IGKYT F S+L + N+ +AFV+ Q + +PKTA+ A +FV Sbjct: 130 TRFFSIGKYTYPSIF---SELNFIINAREAFVSIQTSTIPKTAYAAVNFV---------- 176 Query: 192 KKQREQQWKVQIKPNKDEVHPYADSAVLELPLFLNNSSDRQIFDHFIQPAIRAYKQLGDS 251 + Q E + ++ YAD AV+E+PLFL N D Q+F+ FI+PAI YKQLG+S Sbjct: 177 ETQGEDESYTDSLSTDNKRDIYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNS 236 Query: 252 LNIFAYPTLDQFKHSHYYVLGYPYIAKKLPTLFVNQTGK------EKTVPGETAQIPNDQ 305 F LDQ K+ ++Y+LGYP + + L +NQ + EK P + DQ Sbjct: 237 S--FEKKQLDQHKNDNFYMLGYPLVESSIDALILNQRRQYNNSYTEKYTP---QTLTKDQ 291 Query: 306 PFVSTINEEGPHLGRIKSDKFNGGTWAWNHDNTKN---------FP-FNRQFRGKEYQMY 355 + ++ E P L + K++ G N + P F + K Y+ Y Sbjct: 292 RTID-LSREVPTLIQNKTENSTGSQLLVNQSLSSTSEGIIEFIKLPEFKLNYHNKSYRQY 350 Query: 356 GKGIGITNGSLSRGASGSLVLNNKRQIVAIY-----FASRITETQEWGLAQLLRWKPRSV 410 G+G + N + G+SG+L+LNN++QI IY F ++ G+ Q+LR ++ Sbjct: 351 GRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGVGQILRVPQKN- 409 Query: 411 LNEEKDSVA-----YDLIFGNSNTKKYYAQFAKK 439 N S+A YDLIFG+SNT +YA+FA++ Sbjct: 410 -NTRNRSIATNKSNYDLIFGDSNTTNFYAKFARQ 442 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 181 bits (460), Expect = 1e-047, Method: Compositional matrix adjust. Identities = 163/526 (30%), Positives = 231/526 (43%), Gaps = 126/526 (23%) Query: 1 MWVALKRFGFLSGLLAL-TVLSACSA----------------------FRKPDKFEGYYI 37 MW LK GF L++L +L++CSA F+ +G + Sbjct: 6 MWFKLKSLGF--SLISLQALLASCSAVSPVPVPIEEKNDSTTDNNATPFKDEQSDQGTEV 63 Query: 38 NN-------------------IPGSAEIDHANYDLTFFLGFFNRIEKTEKDKSQIDFGSI 78 N IP ++I YDLTF L F + + Sbjct: 64 NQQPKVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDS------------ 111 Query: 79 HGTGWLIXXXXXXXXXXXXXXFTVYLATNLHVIQALKNREDHPPYNQFDI-----NFVRT 133 +GTGWLI F Y+ATNLHV L+N DH PY++ D + T Sbjct: 112 YGTGWLIDWKGDENTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYEST 171 Query: 134 VDFRIGKYT---DVKQFVAPSKLGLPNSTQAFVAAQPTVLPKTAFIAHDFVNYTLSKDQK 190 V F IGKYT D+ + KL + ++ Q + +PKTA+ A +F+ S Sbjct: 172 VYFSIGKYTNKTDITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFLKGVNS---- 227 Query: 191 NKKQREQQWKVQIKPNKDEVHPYADSAVLELPLFLNNSSDRQIFDHFIQPAIRAYKQLGD 250 IKP YAD AV+EL L L N D QIF+ FI+PAI YK LGD Sbjct: 228 ------------IKP------VYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGD 269 Query: 251 SLNIFAYPTLDQ-FKHSHYYVLGYPYIAKKLPTLFVNQTGKEKTVP---GETAQIPNDQP 306 S NIF L+Q + HSH Y+LGYP + + + + +E + +Q+ + Sbjct: 270 STNIFETKDLEQHWNHSH-YLLGYPVLERGYDQNRLLEQKEEFARTHNFNQKSQLWSKNT 328 Query: 307 FVSTINEEGPHL-------GRIKSDKFNGGTWAWNHD-------------NTKNFPFNRQ 346 ++ + +E P + G+I S+ F+ T + D N KNF + Sbjct: 329 YLVSTAKEIPVITKNARKDGQIGSEIFSKKTQDSHVDKVIKHEKGIVTFQNFKNFKL--K 386 Query: 347 FRGKEYQMYGKGIGITNGSLSRGASGSLVLNNKRQIVAIYFA------SRITETQEWGLA 400 + KEYQ YG G+ + + +L G+SGS + NN ++I +IYF + T G++ Sbjct: 387 YHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGMS 446 Query: 401 QLLRWKPRS-------VLNEEKDSVAYDLIFGNSNTKKYYAQFAKK 439 QLLR R N YDLIFG+SNTK +YAQFAKK Sbjct: 447 QLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKK 492 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 162 bits (411), Expect = 5e-042, Method: Compositional matrix adjust. Identities = 149/499 (29%), Positives = 217/499 (43%), Gaps = 88/499 (17%) Query: 10 FLSGLLALTVLSACS--------AFRKPDKFEGYYINNIPGSAEIDHANYDLTFFLGFFN 61 F+ G + +LS+CS + R Y+NN YDLTF L F N Sbjct: 13 FMPGCI---LLSSCSFRSYIPTPSLRNTVGNHNSYVNNTVPKNNFYEKFYDLTFALNFTN 69 Query: 62 RIEKTEKDKSQIDFGSIHGTGWLI-----------------------XXXXXXXXXXXXX 98 +KT++ GTGWLI Sbjct: 70 --QKTQE----------FGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKEKQDDK 117 Query: 99 XFTVYLATNLHVIQALKNREDHPPYNQFDINFV------RTVDFRIGKYTDVKQFVAPSK 152 F Y+ATNLH+I LKN D+ PYN+ D N + +T F +G++ + K P + Sbjct: 118 LFIAYIATNLHLIDGLKNDHDYQPYNK-DGNGLSFPFDQKTQSFLLGRFANPKINSKPEE 176 Query: 153 LGLPNSTQ----AFVAAQPTVLPKTAFIAHDFVNYTLSKDQKNKKQREQQWKVQIKPNKD 208 + T+ A V Q + LPKTA+ D +N+ + ++ P Sbjct: 177 MNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFWTKKQSTANFPRTR 236 Query: 209 EVHPYADSAVLELPLFLNNSSDRQIFDHFIQPAIRAYKQLGDSLNIFAYPTLDQFKHSHY 268 + YAD AVLE+PLFL+N++D +I+ +I+PA++AYK+LGD NIFA ++ ++ Y Sbjct: 237 TLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAEYINNTY 296 Query: 269 YVLGYPYIAKKLPTLFVNQTGKEK-----TVPGETAQIPNDQPFVSTINEEGPHLGRIKS 323 Y+LGYP + Q K K +V + P Q V ++G Sbjct: 297 YLLGYPVTNNNKYQFILGQDEKWKFSQQTSVLKHYQKQPLQQRTVYVERDDGLPTLTFNE 356 Query: 324 DKFN--GGTWAWNHDNTKNF-------------PFNRQFRGKEYQMYGKGIGITNGSLSR 368 DK GT N D + F + EY+++G G + N + Sbjct: 357 DKLTHVQGTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNVEYKLFGYGTILNNTNFPG 416 Query: 369 GASGSLVLNNKRQIVAIYFASRITETQ------EWGLAQLLRWKPRSVLNEEKDSV--AY 420 G+SGS V N ++Q+ +IYF S I T GL Q+LR N K S +Y Sbjct: 417 GSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILR---TYNTNNSKHSAPSSY 473 Query: 421 DLIFGNSNTKKYYAQFAKK 439 DLIFG+ NT K+YAQFAK+ Sbjct: 474 DLIFGDKNTIKFYAQFAKE 492 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508322|ref|NP_110272.1| hypothetical protein MPN583 [Mycoplasma pneumoniae M129] (225 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 94 2e-021 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 77 1e-016 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 71 8e-015 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 93.6 bits (231), Expect = 2e-021, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 46/214 (21%) Query: 3 NNAQAFVNVQTTVIPKTAFTAHDFVNYTLPXXXXXXXXXXXXXXXPKDGENDKQKEQAET 62 N +AFV++QT+ IPKTA+ A +FV GE++ + T Sbjct: 152 NAREAFVSIQTSTIPKTAYAAVNFV--------------------ETQGEDESYTDSLST 191 Query: 63 QPFEWIQQKDADDKKESNTANTSDSLAYADFAVLELTLFLDNPVDKKVFDHFIQPAIKTY 122 D+K++ YADFAV+E+ LFL N D +VF+ FI+PAI+TY Sbjct: 192 -----------DNKRD----------IYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETY 230 Query: 123 EQLGNSLKLFAKPTLTELKNHRYYLSGYPFLENKVNVLSVNQIKKDTSTETTINGQTVQQ 182 +QLGNS F K L + KN +Y+ GYP +E+ ++ L +NQ ++ ++ T T Q Sbjct: 231 KQLGNS--SFEKKQLDQHKNDNFYMLGYPLVESSIDALILNQRRQYNNSYT--EKYTPQT 286 Query: 183 SNHEQPLIVRSTIAKPTLIRNQGDDFNGSNWVWN 216 +Q I S PTLI+N+ ++ GS + N Sbjct: 287 LTKDQRTIDLSR-EVPTLIQNKTENSTGSQLLVN 319 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 77.0 bits (188), Expect = 1e-016, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 32/199 (16%) Query: 7 AFVNVQTTVIPKTAFTAHDFVNYTLPXXXXXXXXXXXXXXXPKDGENDKQKEQAETQPFE 66 A V +QT+ +PKTA+ D +N+ E ++ F Sbjct: 189 AMVFIQTSTLPKTAYAGIDPINFDY-------------------------HETSDESGF- 222 Query: 67 WIQQKDADDKKESNTANTSDSLAYADFAVLELTLFLDNPVDKKVFDHFIQPAIKTYEQLG 126 W +++ +N T +YADFAVLE+ LFLDN D K++ +I+PA++ Y++LG Sbjct: 223 WTKKQST-----ANFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELG 277 Query: 127 NSLKLFAKPTLTELKNHRYYLSGYPFLENKVNVLSVNQIKK-DTSTETTINGQTVQQSNH 185 + +FAK E N+ YYL GYP N + Q +K S +T++ +Q Sbjct: 278 DVENIFAKTPYAEYINNTYYLLGYPVTNNNKYQFILGQDEKWKFSQQTSVLKHYQKQPLQ 337 Query: 186 EQPLIVRSTIAKPTLIRNQ 204 ++ + V PTL N+ Sbjct: 338 QRTVYVERDDGLPTLTFNE 356 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 71.2 bits (173), Expect = 8e-015, Method: Compositional matrix adjust. Identities = 34/66 (51%), Positives = 45/66 (68%) Query: 89 AYADFAVLELTLFLDNPVDKKVFDHFIQPAIKTYEQLGNSLKLFAKPTLTELKNHRYYLS 148 YADFAV+EL L L+N D ++F+ FI+PAI TY+ LG+S +F L + NH +YL Sbjct: 231 VYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLL 290 Query: 149 GYPFLE 154 GYP LE Sbjct: 291 GYPVLE 296 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508323|ref|NP_110273.1| hypothetical protein MPN584 [Mycoplasma pneumoniae M129] (135 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 70 1e-014 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 70 1e-014 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 66 1e-013 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 69.7 bits (169), Expect = 1e-014, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 16/136 (11%) Query: 13 LEFSGKKYRIYGQXXXXXXXXXXXXXXXXXXXNDKKQIAGIYFGV------DGANNELGL 66 L + K YR YG+ N++KQIAGIYFGV + +G+ Sbjct: 340 LNYHNKSYRQYGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGV 399 Query: 67 AQLLRWKPETYHNDEARSVA-----YDLIFGNKNTTKYYAQFVKEHKTHLYEQIKQINND 121 Q+LR + +N RS+A YDLIFG+ NTT +YA+F +++ THLY+ I + Sbjct: 400 GQILRVPQK--NNTRNRSIATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDT 457 Query: 122 EFRF---VEKTKRHNL 134 + ++ VEKT + ++ Sbjct: 458 KLKYVNTVEKTVKASI 473 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 69.7 bits (169), Expect = 1e-014, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 15/137 (10%) Query: 7 QKFKVY-LEFSGKKYRIYGQXXXXXXXXXXXXXXXXXXXNDKKQIAGIYFGV-------D 58 Q FK + L++ K+Y+ YG N+ ++I IYFGV Sbjct: 378 QNFKNFKLKYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSK 437 Query: 59 GANNELGLAQLLRWKPETYHNDEARSVA-------YDLIFGNKNTTKYYAQFVKEHKTHL 111 + +G++QLLR ++ R+ YDLIFG+ NT +YAQF K+H THL Sbjct: 438 THKDNIGMSQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHL 497 Query: 112 YEQIKQINNDEFRFVEK 128 Y+QIK +EF++V+K Sbjct: 498 YDQIKSSEKEEFKYVDK 514 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 65.9 bits (159), Expect = 1e-013, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 14/91 (15%) Query: 45 NDKKQIAGIYFG----VDGANNE---LGLAQLLRWKPETYHNDEARSVA---YDLIFGNK 94 N +KQ+ IYFG V NN LGL Q+LR TY+ + ++ A YDLIFG+K Sbjct: 425 NKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILR----TYNTNNSKHSAPSSYDLIFGDK 480 Query: 95 NTTKYYAQFVKEHKTHLYEQIKQINNDEFRF 125 NT K+YAQF KE +THL+ +I+ N F Sbjct: 481 NTIKFYAQFAKEKQTHLWNKIQTSVNSSISF 511 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508324|ref|NP_110274.1| hypothetical protein MPN585 [Mycoplasma pneumoniae M129] (302 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 180 1e-047 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 138 5e-035 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 137 1e-034 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 180 bits (457), Expect = 1e-047, Method: Compositional matrix adjust. Identities = 113/269 (42%), Positives = 155/269 (57%), Gaps = 31/269 (11%) Query: 31 EFYINNIPSSTEIHRFNYDLNFSLTFTNRITSNGEAKFSVTYGTGWLIDWKEPDKKKE-N 89 +F IN+IP+ ++ + NYDL FSL F + + TYGTGWLIDWK + E N Sbjct: 38 QFKINSIPTVSDPYHINYDLTFSLNFASNKRN--------TYGTGWLIDWKGDENNPEKN 89 Query: 90 DPFRAYLATNLHVAASLINPQDYEPYKNKDDAGW-------TTTFRLGKYTKVSDFVSPN 142 DPF+ YLATNLHV +L N DYEPY NKD T F +GKYT S F N Sbjct: 90 DPFKVYLATNLHVIDALRNNNDYEPY-NKDSNNQAFNSEEITRFFSIGKYTYPSIFSELN 148 Query: 143 QFGLPNAAQALVNVQTSVIPKTAFAARDFVDYSFPXXXXXXXXXXXXWVKNSHTKNSDVQ 202 + NA +A V++QTS IPKTA+AA +FV+ +S + ++ Sbjct: 149 --FIINAREAFVSIQTSTIPKTAYAAVNFVE----------TQGEDESYTDSLSTDNKRD 196 Query: 203 PFAEFAILEIPLFSKSKVDRKIFNHFIQPAIRTYKQLGDSLNIFANPTLDQLKQNRYYVL 262 +A+FA++EIPLF + D ++FN FI+PAI TYKQLG+S F LDQ K + +Y+L Sbjct: 197 IYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNS--SFEKKQLDQHKNDNFYML 254 Query: 263 GYPFLKNKVSSLFLNQTGKKKGIFRRKYT 291 GYP +++ + +L LNQ + + KYT Sbjct: 255 GYPLVESSIDALILNQRRQYNNSYTEKYT 283 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 138 bits (348), Expect = 5e-035, Method: Compositional matrix adjust. Identities = 107/335 (31%), Positives = 155/335 (46%), Gaps = 67/335 (20%) Query: 1 MLVVFKRLGFIVSIFSLTFLSACAAFDKW------------QEFYINN-IPSSTEIHRFN 47 ML F + G + + LS+C+ F + Y+NN +P + +F Sbjct: 1 MLYRFWKTGLAIFMPGCILLSSCS-FRSYIPTPSLRNTVGNHNSYVNNTVPKNNFYEKF- 58 Query: 48 YDLNFSLTFTNRITSNGEAKFSVTYGTGWLIDWKEPD----------------------- 84 YDL F+L FTN+ T +GTGWLIDWK + Sbjct: 59 YDLTFALNFTNQKTQE--------FGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSL 110 Query: 85 KKKENDP-FRAYLATNLHVAASLINPQDYEPYKNKDDAGW-------TTTFRLGKYTKVS 136 K+K++D F AY+ATNLH+ L N DY+PY NKD G T +F LG++ Sbjct: 111 KEKQDDKLFIAYIATNLHLIDGLKNDHDYQPY-NKDGNGLSFPFDQKTQSFLLGRFANPK 169 Query: 137 DFVSPNQFGLPNAAQ----ALVNVQTSVIPKTAFAARDFVDYSFPXXXXXXXXXXXXWVK 192 P + + A+V +QTS +PKTA+A D +++ + W K Sbjct: 170 INSKPEEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDY----HETSDESGFWTK 225 Query: 193 NSHTKN----SDVQPFAEFAILEIPLFSKSKVDRKIFNHFIQPAIRTYKQLGDSLNIFAN 248 T N ++ +A+FA+LE+PLF + D KI+ +I+PA++ YK+LGD NIFA Sbjct: 226 KQSTANFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAK 285 Query: 249 PTLDQLKQNRYYVLGYPFLKNKVSSLFLNQTGKKK 283 + N YY+LGYP N L Q K K Sbjct: 286 TPYAEYINNTYYLLGYPVTNNNKYQFILGQDEKWK 320 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 137 bits (346), Expect = 1e-034, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 128/243 (52%), Gaps = 42/243 (17%) Query: 37 IPSSTEIHRFNYDLNFSLTFTNRITSNGEAKFS-VTYGTGWLIDWK-EPDKKKENDPFRA 94 IP ++I+R YDL F+L FT+ FS +YGTGWLIDWK + + ++ F A Sbjct: 85 IPEESDIYRKGYDLTFTLNFTS---------FSNDSYGTGWLIDWKGDENTTQKQGSFFA 135 Query: 95 YLATNLHVAASLINPQDYEPYKNKDDAGW------TTTFRLGKYTKVSDFV---SPNQFG 145 Y+ATNLHVA L N D+ PY DD T F +GKYT +D + Sbjct: 136 YIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTDITKLYQEEKLE 195 Query: 146 LPNAAQALVNVQTSVIPKTAFAARDFVDYSFPXXXXXXXXXXXXWVKNSHTKNSDVQPFA 205 +L+++QTS IPKTA+ A +F+ NS +A Sbjct: 196 QRKVNDSLLSIQTSNIPKTAYTATNFL----------------------KGVNSIKPVYA 233 Query: 206 EFAILEIPLFSKSKVDRKIFNHFIQPAIRTYKQLGDSLNIFANPTLDQLKQNRYYVLGYP 265 +FA++E+ L ++ D +IFN FI+PAI TYK LGDS NIF L+Q + +Y+LGYP Sbjct: 234 DFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLLGYP 293 Query: 266 FLK 268 L+ Sbjct: 294 VLE 296 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508325|ref|NP_110275.1| hypothetical protein MPN586 [Mycoplasma pneumoniae M129] (347 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 173 2e-045 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 150 2e-038 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 144 1e-036 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 173 bits (439), Expect = 2e-045, Method: Compositional matrix adjust. Identities = 121/324 (37%), Positives = 167/324 (51%), Gaps = 36/324 (11%) Query: 42 NGAQAFVSAQTSTIPKTAFTAHDFVDYTLPXXXXXXXXXXXXWMKNSQTKDTDVHPYADF 101 N +AFVS QTSTIPKTA+ A +FV+ +S + D YADF Sbjct: 152 NAREAFVSIQTSTIPKTAYAAVNFVE----------TQGEDESYTDSLSTDNKRDIYADF 201 Query: 102 AVLEILLFPDSSTDRKIFNHFIQPAIRAYKQLGDSLNIFANQTLDQPKHNRYYLLGYPFL 161 AV+EI LF + D ++FN FI+PAI YKQLG+S F + LDQ K++ +Y+LGYP + Sbjct: 202 AVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQHKNDNFYMLGYPLV 259 Query: 162 RNKAASLFLNQTEQ-RKEHMDK-TTQILHEKPFVVLTDPAKPTLIRNKGANFTGNTWTSN 219 + +L LNQ Q + +K T Q L + + PTLI+NK N TG+ N Sbjct: 260 ESSIDALILNQRRQYNNSYTEKYTPQTLTKDQRTIDLSREVPTLIQNKTENSTGSQLLVN 319 Query: 220 YDLSKKSGLYHKFL----------GKKYQIYGKSIVIXXXXXXXXXXXXXXXXXRKQIVG 269 LS S +F+ K Y+ YG+ + +KQI G Sbjct: 320 QSLSSTSEGIIEFIKLPEFKLNYHNKSYRQYGRGFALQNTNFRPGSSGTLMLNNQKQIAG 379 Query: 270 IYFGV-DGPKD-----ELGFSQLLRWQAKNNDEEKDSVA-----YDLIFGNKNTTKYYAQ 318 IYFGV D +D +G Q+LR KNN + S+A YDLIFG+ NTT +YA+ Sbjct: 380 IYFGVLDFGEDVSLMSNIGVGQILRVPQKNNTRNR-SIATNKSNYDLIFGDSNTTNFYAK 438 Query: 319 FAKEHKTHLYEQIDRSNDQQFTFV 342 FA+++ THLY+ I S D + +V Sbjct: 439 FARQNNTHLYQMISNSKDTKLKYV 462 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 150 bits (378), Expect = 2e-038, Method: Compositional matrix adjust. Identities = 113/351 (32%), Positives = 164/351 (46%), Gaps = 47/351 (13%) Query: 32 LCHQTKIGLPNGAQAFVSAQTSTIPKTAFTAHDFVDYTLPXXXXXXXXXXXXWMKNSQT- 90 + +Q + L A F+ QTST+PKTA+ D +++ W K T Sbjct: 177 MNYQVQTRLKQDAMVFI--QTSTLPKTAYAGIDPINF----DYHETSDESGFWTKKQSTA 230 Query: 91 ---KDTDVHPYADFAVLEILLFPDSSTDRKIFNHFIQPAIRAYKQLGDSLNIFANQTLDQ 147 + + YADFAVLE+ LF D++ D KI+ +I+PA++AYK+LGD NIFA + Sbjct: 231 NFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAE 290 Query: 148 PKHNRYYLLGYPFLRNKAASLFLNQTEQRK--------EHMDKTTQILHEKPFVVLTDPA 199 +N YYLLGYP N L Q E+ K +H K Q L ++ V D Sbjct: 291 YINNTYYLLGYPVTNNNKYQFILGQDEKWKFSQQTSVLKHYQK--QPLQQRTVYVERDDG 348 Query: 200 KPTLIRNK-------GANFT----------GNTWTSNYDLSKKSGLYHKFLGKKYQIYGK 242 PTL N+ G + GN + LS+ + YH +Y+++G Sbjct: 349 LPTLTFNEDKLTHVQGTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNV---EYKLFGY 405 Query: 243 SIVIXXXXXXXXXXXXXXXXXRKQIVGIYFGV-------DGPKDELGFSQLLRWQAKNND 295 ++ KQ+ IYFG + LG Q+LR NN Sbjct: 406 GTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRTYNTNNS 465 Query: 296 EEKDSVAYDLIFGNKNTTKYYAQFAKEHKTHLYEQIDRSNDQQFTFVKNQK 346 + +YDLIFG+KNT K+YAQFAKE +THL+ +I S + +F K++K Sbjct: 466 KHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSSISFYKDKK 516 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 144 bits (364), Expect = 1e-036, Method: Compositional matrix adjust. Identities = 111/341 (32%), Positives = 165/341 (48%), Gaps = 62/341 (18%) Query: 46 AFVSAQTSTIPKTAFTAHDFVDYTLPXXXXXXXXXXXXWMKNSQTKDTDVHP-YADFAVL 104 + +S QTS IPKTA+TA +F+ + P YADFAV+ Sbjct: 202 SLLSIQTSNIPKTAYTATNFLKGV-----------------------NSIKPVYADFAVI 238 Query: 105 EILLFPDSSTDRKIFNHFIQPAIRAYKQLGDSLNIFANQTLDQPKHNRYYLLGYPFL-RN 163 E+ L ++ D +IFN FI+PAI YK LGDS NIF + L+Q ++ +YLLGYP L R Sbjct: 239 ELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLLGYPVLERG 298 Query: 164 KAASLFLNQTEQ--RKEHMDKTTQILHEKPFVVLTDPAKPTLIRNKGAN-------FTGN 214 + L Q E+ R + ++ +Q+ + ++V T P + +N + F+ Sbjct: 299 YDQNRLLEQKEEFARTHNFNQKSQLWSKNTYLVSTAKEIPVITKNARKDGQIGSEIFSKK 358 Query: 215 TWTSNYD--LSKKSGLYH---------KFLGKKYQIYGKSIVIXXXXXXXXXXXXXXXXX 263 T S+ D + + G+ K+ K+YQ YG +++ Sbjct: 359 TQDSHVDKVIKHEKGIVTFQNFKNFKLKYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNN 418 Query: 264 RKQIVGIYFGV-------DGPKDELGFSQLLRWQAKNNDEEKDSVA--------YDLIFG 308 ++I IYFGV KD +G SQLLR + +++ K YDLIFG Sbjct: 419 NQKINSIYFGVLEVYKNSKTHKDNIGMSQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFG 478 Query: 309 NKNTTKYYAQFAKEHKTHLYEQIDRSNDQQFTFV--KNQKC 347 + NT +YAQFAK+H THLY+QI S ++F +V NQK Sbjct: 479 DSNTKSFYAQFAKKHNTHLYDQIKSSEKEEFKYVDKNNQKT 519 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508326|ref|NP_110276.1| hypothetical protein MPN587 [Mycoplasma pneumoniae M129] (150 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 80 8e-018 ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 75 4e-016 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 60 2e-011 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 80.5 bits (197), Expect = 8e-018, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 22/127 (17%) Query: 22 ACATISLSDKSG---EFYINNIPSSAELHRINYDLTFSLGFTNRIQTKKKNEVNFVAFYG 78 C+ + + G +F IN+IP+ ++ + INYDLTFSL F + K+N YG Sbjct: 23 GCSFVRPQFRRGFRTQFKINSIPTVSDPYHINYDLTFSLNFA----SNKRNT------YG 72 Query: 79 TGLLIDWK--EGN--QYQPFRVYLATNVHVAAGLKNEADYLPYSQPDAELGWTVD----- 129 TG LIDWK E N + PF+VYLATN+HV L+N DY PY++ + + Sbjct: 73 TGWLIDWKGDENNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRF 132 Query: 130 FRLGKYT 136 F +GKYT Sbjct: 133 FSIGKYT 139 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 74.7 bits (182), Expect = 4e-016, Method: Compositional matrix adjust. Identities = 48/110 (43%), Positives = 61/110 (55%), Gaps = 19/110 (17%) Query: 40 IPSSAELHRINYDLTFSLGFTNRIQTKKKNEVNFVAFYGTGLLIDWK-EGNQYQP---FR 95 IP ++++R YDLTF+L FT+ YGTG LIDWK + N Q F Sbjct: 85 IPEESDIYRKGYDLTFTLNFTSFSNDS----------YGTGWLIDWKGDENTTQKQGSFF 134 Query: 96 VYLATNVHVAAGLKNEADYLPYSQPDA-----ELGWTVDFRLGKYTNVKD 140 Y+ATN+HVA GL+N D+ PYS+ D E TV F +GKYTN D Sbjct: 135 AYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTD 184 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 59.7 bits (143), Expect = 2e-011, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 72/177 (40%), Gaps = 49/177 (27%) Query: 2 VIALKRFSFLASIATLTVLNACATISLSDKSGEFYINNIPSSAELHRINYDLTFSLGFTN 61 I L SF + I T ++ N + Y+NN + YDLTF+L FTN Sbjct: 17 CILLSSCSFRSYIPTPSLRNTVG-------NHNSYVNNTVPKNNFYEKFYDLTFALNFTN 69 Query: 62 RIQTKKKNEVNFVAFYGTGLLIDWK---------------------------EGNQYQPF 94 + K E +GTG LIDWK E + F Sbjct: 70 Q----KTQE------FGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKEKQDDKLF 119 Query: 95 RVYLATNVHVAAGLKNEADYLPYSQPDAELGWTVD-----FRLGKYTNVKDFVSPNE 146 Y+ATN+H+ GLKN+ DY PY++ L + D F LG++ N K P E Sbjct: 120 IAYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKINSKPEE 176 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508327|ref|NP_110277.1| hypothetical protein MPN588 [Mycoplasma pneumoniae M129] (531 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 405 e-115 ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 336 4e-094 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 285 9e-079 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 405 bits (1040), Expect = e-115, Method: Compositional matrix adjust. Identities = 215/469 (45%), Positives = 304/469 (64%), Gaps = 38/469 (8%) Query: 61 NRGFHFQTNKVPSESDVFKHNYDLTFSLNFTNKSNDIYGTGWLFDWKGDEKALGIDGSFV 120 NR F F T+ +P ESD+++ YDLTF+LNFT+ SND YGTGWL DWKGDE GSF Sbjct: 75 NRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKGDENTTQKQGSFF 134 Query: 121 PSITSNIDNSLLKDDQFTVYLATNLHVADALRNDQDYEPYKKDQNKQDFTENTKTEFFSL 180 Y+ATNLHVAD LRN D+ PY K ++++F E T +FS+ Sbjct: 135 ------------------AYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSI 176 Query: 181 GKYLEGEQLKQYISKEENQSANQTDKALVSIQASNIPKTAYTATDFVDMNSYSYNNITTS 240 GKY + + + +EE + + +L+SIQ SNIPKTAYTAT+F+ S Sbjct: 177 GKYTNKTDITK-LYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFLKG--------VNS 227 Query: 241 LPGNYADFAVIEVNLNLKNQRDQQILHDFVKPAIKAYKALGDTLELFSAKPLNQFIEQNY 300 + YADFAVIE+ LNL+N RD QI ++F+KPAI YK+LGD+ +F K L Q ++ Sbjct: 228 IKPVYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSH 287 Query: 301 YLLGYPVINKGNNTANLLLAQQKSFDHNNSDHNQKSQWFTKDQSYINKLDRIPVLTNNYR 360 YLLGYPV+ +G + N LL Q++ F + + NQKSQ ++K+ ++ IPV+T N R Sbjct: 288 YLLGYPVLERGYD-QNRLLEQKEEFARTH-NFNQKSQLWSKNTYLVSTAKEIPVITKNAR 345 Query: 361 AYNESTGSQLFANQQNESWLNGVVIQDKGVVNFASFSNFTLKYHEKRFQQYGYGLMLNDT 420 + GS++F+ + +S ++ V+ +KG+V F +F NF LKYH+K +QQYGYGLML+DT Sbjct: 346 K-DGQIGSEIFSKKTQDSHVDKVIKHEKGIVTFQNFKNFKLKYHDKEYQQYGYGLMLDDT 404 Query: 421 NFPGGSSGSPLIGKDNKLNSIYFGVLEIYQSGSLARNDIGMSQILRTPQNDKGSSISKGS 480 N PGGSSGS + + K+NSIYFGVLE+Y++ +++IGMSQ+LRT + + + ++ + Sbjct: 405 NLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGMSQLLRTSKRESEKNKTRTT 464 Query: 481 --------YDLIFGDKNTKNYYAKFAKDHQTHLYQKIKESKDEQFRFVE 521 YDLIFGD NTK++YA+FAK H THLY +IK S+ E+F++V+ Sbjct: 465 NNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHLYDQIKSSEKEEFKYVD 513 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 336 bits (861), Expect = 4e-094, Method: Compositional matrix adjust. Identities = 210/475 (44%), Positives = 271/475 (57%), Gaps = 49/475 (10%) Query: 62 RGFH--FQTNKVPSESDVFKHNYDLTFSLNFTNKSNDIYGTGWLFDWKGDEKALGIDGSF 119 RGF F+ N +P+ SD + NYDLTFSLNF + + YGTGWL DWKGDE Sbjct: 33 RGFRTQFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGDE--------- 83 Query: 120 VPSITSNIDNSLLKDDQFTVYLATNLHVADALRNDQDYEPYKKDQNKQDFTENTKTEFFS 179 N+ K+D F VYLATNLHV DALRN+ DYEPY KD N Q F T FFS Sbjct: 84 ---------NNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFS 134 Query: 180 LGKYLEGEQLKQYISKEENQSANQTDKALVSIQASNIPKTAYTATDFVDM----NSYSYN 235 +GKY I E N N + A VSIQ S IPKTAY A +FV+ SY+ + Sbjct: 135 IGKYTYPS-----IFSELNFIINARE-AFVSIQTSTIPKTAYAAVNFVETQGEDESYTDS 188 Query: 236 NITTSLPGNYADFAVIEVNLNLKNQRDQQILHDFVKPAIKAYKALGDTLELFSAKPLNQF 295 T + YADFAVIE+ L L N RD Q+ ++F+KPAI+ YK LG++ F K L+Q Sbjct: 189 LSTDNKRDIYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNS--SFEKKQLDQH 246 Query: 296 IEQNYYLLGYPVINKGNNTANLLLAQQKSFDHNNSDHNQKSQWFTKDQSYINKLDRIPVL 355 N+Y+LGYP++ + L+L Q++ ++ N+ Q TKDQ I+ +P L Sbjct: 247 KNDNFYMLGYPLVESSIDA--LILNQRRQYN-NSYTEKYTPQTLTKDQRTIDLSREVPTL 303 Query: 356 TNNYRAYNESTGSQLFANQQNESWLNGVVIQDKGVVNFASFSNFTLKYHEKRFQQYGYGL 415 N STGSQL NQ S +G++ F F L YH K ++QYG G Sbjct: 304 IQN--KTENSTGSQLLVNQSLSS-------TSEGIIEFIKLPEFKLNYHNKSYRQYGRGF 354 Query: 416 MLNDTNFPGGSSGSPLIGKDNKLNSIYFGVLEIYQSGSLARNDIGMSQILRTPQ--NDKG 473 L +TNF GSSG+ ++ ++ IYFGVL+ + SL N IG+ QILR PQ N + Sbjct: 355 ALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSN-IGVGQILRVPQKNNTRN 413 Query: 474 SSIS--KGSYDLIFGDKNTKNYYAKFAKDHQTHLYQKIKESKDEQFRFVETQETT 526 SI+ K +YDLIFGD NT N+YAKFA+ + THLYQ I SKD + ++V T E T Sbjct: 414 RSIATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDTKLKYVNTVEKT 468 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 285 bits (729), Expect = 9e-079, Method: Compositional matrix adjust. Identities = 186/481 (38%), Positives = 266/481 (55%), Gaps = 46/481 (9%) Query: 69 NKVPSESDVFKHNYDLTFSLNFTNKSNDIYGTGWLFDWKGDE-KALGIDGSFVPSITSNI 127 N VP +++ ++ YDLTF+LNFTN+ +GTGWL DWKGDE K L SI S++ Sbjct: 47 NTVP-KNNFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSIISSV 105 Query: 128 DNSLLKDDQ----FTVYLATNLHVADALRNDQDYEPYKKDQNKQDFTENTKTEFFSLGKY 183 N LK+ Q F Y+ATNLH+ D L+ND DY+PY KD N F + KT+ F LG++ Sbjct: 106 SNHSLKEKQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRF 165 Query: 184 L------EGEQLKQYISKEENQSANQTDKALVSIQASNIPKTAYTATDFVDMNS------ 231 + E++ + Q A +V IQ S +PKTAY D ++ + Sbjct: 166 ANPKINSKPEEMNYQVQTRLKQDA------MVFIQTSTLPKTAYAGIDPINFDYHETSDE 219 Query: 232 ---YSYNNITTSLP-----GNYADFAVIEVNLNLKNQRDQQILHDFVKPAIKAYKALGDT 283 ++ T + P +YADFAV+EV L L N D +I ++++PA++AYK LGD Sbjct: 220 SGFWTKKQSTANFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDV 279 Query: 284 LELFSAKPLNQFIEQNYYLLGYPVINKGNNTANLLLAQQKSFDHNNS----DHNQKSQWF 339 +F+ P ++I YYLLGYPV N NN +L Q + + + H QK Q Sbjct: 280 ENIFAKTPYAEYINNTYYLLGYPVTN--NNKYQFILGQDEKWKFSQQTSVLKHYQK-QPL 336 Query: 340 TKDQSYINKLDRIPVLTNNYRAYNESTGSQLF-ANQQNESWLNGVVIQDKGVVNFASFSN 398 + Y+ + D +P LT N G+ L +Q ++ L G++N+A S Sbjct: 337 QQRTVYVERDDGLPTLTFNEDKLTHVQGTDLINVDQITDTNLGN------GLINYAGLSR 390 Query: 399 FTLKYHEKRFQQYGYGLMLNDTNFPGGSSGSPLIGKDNKLNSIYFGVLEIYQSGSLARND 458 FTL YH ++ +GYG +LN+TNFPGGSSGS + K+ +L SIYFG L +G+ + Sbjct: 391 FTLSYHNVEYKLFGYGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVN 450 Query: 459 IGMSQILRTPQNDKGSSISKGSYDLIFGDKNTKNYYAKFAKDHQTHLYQKIKESKDEQFR 518 +G+ QILRT + + SYDLIFGDKNT +YA+FAK+ QTHL+ KI+ S + Sbjct: 451 LGLGQILRTYNTNNSKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSSIS 510 Query: 519 F 519 F Sbjct: 511 F 511 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508328|ref|NP_110278.1| hypothetical protein MPN589 [Mycoplasma pneumoniae M129] (157 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508329|ref|NP_110279.1| hypothetical protein MPN590 [Mycoplasma pneumoniae M129] (217 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 128 6e-032 ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 100 8e-024 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 83 2e-018 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 128 bits (321), Expect = 6e-032, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 39/239 (16%) Query: 11 LRYRLKGFVFLTLLLVQGVFTACAPA----VPVNNKSVSAV----------QPEDKQALK 56 + ++LK F +L+ +Q + +C+ VP+ K+ S Q + + Sbjct: 6 MWFKLKSLGF-SLISLQALLASCSAVSPVPVPIEEKNDSTTDNNATPFKDEQSDQGTEVN 64 Query: 57 PDPALGE--YTSDLKFNTNFIPKKDDPFRPFYDLSFTLQFQDPYTATYGTGWLIDWK-DN 113 P + + Y + KFNT+FIP++ D +R YDL+FTL F +YGTGWLIDWK D Sbjct: 65 QQPKVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKGDE 124 Query: 114 NQPNK---FTAYIATNLHVADNLRNVNDY---------EFFNQFDYFDDPTESFTLGKFV 161 N K F AYIATNLHVAD LRN+ D+ FN++ + T F++GK+ Sbjct: 125 NTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEY----ESTVYFSIGKYT 180 Query: 162 DGNEIKQIVPDAMHEP-----SLVRIETSKLPKTAYTTTLFINDLGEYRLPAADFAVLE 215 + +I ++ + E SL+ I+TS +PKTAYT T F+ + + ADFAV+E Sbjct: 181 NKTDITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFLKGVNSIKPVYADFAVIE 239 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 100 bits (250), Expect = 8e-024, Method: Compositional matrix adjust. Identities = 68/168 (40%), Positives = 87/168 (51%), Gaps = 21/168 (12%) Query: 69 KFNTNFIPKKDDPFRPFYDLSFTLQFQDPYTATYGTGWLIDWK-DNNQPNK---FTAYIA 124 +F N IP DP+ YDL+F+L F TYGTGWLIDWK D N P K F Y+A Sbjct: 38 QFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGDENNPEKNDPFKVYLA 97 Query: 125 TNLHVADNLRNVNDYEFF-----NQFDYFDDPTESFTLGKFVDGNEIKQIVPDAMHEPSL 179 TNLHV D LRN NDYE + NQ ++ T F++GK+ + ++ + Sbjct: 98 TNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPSIFSELNFIINAREAF 157 Query: 180 VRIETSKLPKTAYTTTLFINDLGE------------YRLPAADFAVLE 215 V I+TS +PKTAY F+ GE R ADFAV+E Sbjct: 158 VSIQTSTIPKTAYAAVNFVETQGEDESYTDSLSTDNKRDIYADFAVIE 205 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 82.8 bits (203), Expect = 2e-018, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 84/174 (48%), Gaps = 38/174 (21%) Query: 57 PDPALGEYTSDLKFNTNFIPKKDDPFRPFYDLSFTLQFQDPYTATYGTGWLIDWKDN--- 113 P P+L + N K++ + FYDL+F L F + T +GTGWLIDWK + Sbjct: 30 PTPSLRNTVGNHNSYVNNTVPKNNFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGDETK 89 Query: 114 -----------------------NQPNK-FTAYIATNLHVADNLRNVNDYEFFNQFDY-- 147 Q +K F AYIATNLH+ D L+N +DY+ +N+ Sbjct: 90 DLNTLTIASSSIISSVSNHSLKEKQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDGNGL 149 Query: 148 ---FDDPTESFTLGKFVDGN------EIKQIVPDAMHEPSLVRIETSKLPKTAY 192 FD T+SF LG+F + E+ V + + ++V I+TS LPKTAY Sbjct: 150 SFPFDQKTQSFLLGRFANPKINSKPEEMNYQVQTRLKQDAMVFIQTSTLPKTAY 203 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508330|ref|NP_110280.1| hypothetical protein MPN591 [Mycoplasma pneumoniae M129] (353 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 206 2e-055 ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 169 4e-044 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 167 1e-043 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 206 bits (525), Expect = 2e-055, Method: Compositional matrix adjust. Identities = 143/391 (36%), Positives = 206/391 (52%), Gaps = 65/391 (16%) Query: 1 MANSLRNVNDYDPFKYR--PSYFDLEAPTESFALGKFVDAIEVKQMALDAFSES-----S 53 +A+ LRN+ D+ P+ F+ T F++GK+ + ++ ++ + E S Sbjct: 143 VADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTDITKLYQEEKLEQRKVNDS 202 Query: 54 MVSIATSQLPKTAYTATSFIESEYYSFPYLFNDQKYYWDYFDYKIPAADFAVXXXXXXXX 113 ++SI TS +PKTAYTAT+F++ P ADFAV Sbjct: 203 LLSIQTSNIPKTAYTATNFLKGVNSIKPVY-----------------ADFAVIELELNLE 245 Query: 114 XXXXXXIKDHFIDPAIKAYKQLGDSTGLFATKPLTEYQNDTHYLLGYPVVPT--DHTQLW 171 I + FI PAI YK LGDST +F TK L ++ N +HYLLGYPV+ D +L Sbjct: 246 NLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLLGYPVLERGYDQNRLL 305 Query: 172 ECK----------QGAERFSYGYFYSNMAR----LTKNLRQGDPNAGS-----KTHIEYS 212 E K Q ++ +S + + A+ +TKN R+ D GS KT + Sbjct: 306 EQKEEFARTHNFNQKSQLWSKNTYLVSTAKEIPVITKNARK-DGQIGSEIFSKKTQDSHV 364 Query: 213 NELLDKDSMDQGIVRFSTFLGANINYHDYDYRQQGYGLTLTDTNLPGGSSGSLVFNQDKK 272 ++++ ++GIV F F + YHD +Y+Q GYGL L DTNLPGGSSGS +FN ++K Sbjct: 365 DKVI---KHEKGIVTFQNFKNFKLKYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQK 421 Query: 273 ISSIY--------SAATESDSVGYAQLLRTPR---DVNGISVVS-----QSYDLIFGDSN 316 I+SIY ++ T D++G +QLLRT + + N + Q YDLIFGDSN Sbjct: 422 INSIYFGVLEVYKNSKTHKDNIGMSQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSN 481 Query: 317 TKRYYAMFAKKQQTHLYSEILKSTDEQYRYV 347 TK +YA FAKK THLY +I S E+++YV Sbjct: 482 TKSFYAQFAKKHNTHLYDQIKSSEKEEFKYV 512 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 169 bits (428), Expect = 4e-044, Method: Compositional matrix adjust. Identities = 127/372 (34%), Positives = 186/372 (50%), Gaps = 36/372 (9%) Query: 1 MANSLRNVNDYDPFKYRPS--YFDLEAPTESFALGKFVDAIEVKQMALDAFSESSMVSIA 58 + ++LRN NDY+P+ + F+ E T F++GK+ ++ + + VSI Sbjct: 102 VIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPSIFSELNFIINAREAFVSIQ 161 Query: 59 TSQLPKTAYTATSFIESEYYSFPY---LFNDQKYYWDYFDYKIPAADFAVXXXXXXXXXX 115 TS +PKTAY A +F+E++ Y L D K D + ADFAV Sbjct: 162 TSTIPKTAYAAVNFVETQGEDESYTDSLSTDNK--RDIY------ADFAVIEIPLFLTNH 213 Query: 116 XXXXIKDHFIDPAIKAYKQLGDSTGLFATKPLTEYQNDTHYLLGYPVVPTDHTQLWECKQ 175 + + FI PAI+ YKQLG+S+ F K L +++ND Y+LGYP+V + L ++ Sbjct: 214 RDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQHKNDNFYMLGYPLVESSIDALILNQR 271 Query: 176 GAERFSYGYFYSNMARLTKNLRQGDPNAGSKTHIEYSNE------LLDKDSMD---QGIV 226 SY Y+ LTK+ R D + T I+ E LL S+ +GI+ Sbjct: 272 RQYNNSYTEKYTPQT-LTKDQRTIDLSREVPTLIQNKTENSTGSQLLVNQSLSSTSEGII 330 Query: 227 RFSTFLGANINYHDYDYRQQGYGLTLTDTNLPGGSSGSLVFNQDKKISSIYSAATE---- 282 F +NYH+ YRQ G G L +TN GSSG+L+ N K+I+ IY + Sbjct: 331 EFIKLPEFKLNYHNKSYRQYGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGED 390 Query: 283 ---SDSVGYAQLLRTPRDVN----GISVVSQSYDLIFGDSNTKRYYAMFAKKQQTHLYSE 335 ++G Q+LR P+ N I+ +YDLIFGDSNT +YA FA++ THLY Sbjct: 391 VSLMSNIGVGQILRVPQKNNTRNRSIATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQM 450 Query: 336 ILKSTDEQYRYV 347 I S D + +YV Sbjct: 451 ISNSKDTKLKYV 462 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 167 bits (424), Expect = 1e-043, Method: Compositional matrix adjust. Identities = 122/394 (30%), Positives = 191/394 (48%), Gaps = 49/394 (12%) Query: 1 MANSLRNVNDYDPFKYRPS--YFDLEAPTESFALGKFVDAI------EVKQMALDAFSES 52 + + L+N +DY P+ + F + T+SF LG+F + E+ + Sbjct: 129 LIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKINSKPEEMNYQVQTRLKQD 188 Query: 53 SMVSIATSQLPKTAYTATSFIESEYYSFPYLFNDQKYYW--DYFDYKIPA-------ADF 103 +MV I TS LPKTAY I +Y+ +D+ +W P ADF Sbjct: 189 AMVFIQTSTLPKTAYAGIDPINFDYHET----SDESGFWTKKQSTANFPRTRTLKSYADF 244 Query: 104 AVXXXXXXXXXXXXXXIKDHFIDPAIKAYKQLGDSTGLFATKPLTEYQNDTHYLLGYPVV 163 AV I +I PA++AYK+LGD +FA P EY N+T+YLLGYPV Sbjct: 245 AVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAEYINNTYYLLGYPVT 304 Query: 164 PTDHTQL-------WECKQGAERFSYGYFYSNMARLTKNLRQGDP------NAGSKTHIE 210 + Q W+ Q + Y + + T + + D N TH++ Sbjct: 305 NNNKYQFILGQDEKWKFSQQTSVLKH-YQKQPLQQRTVYVERDDGLPTLTFNEDKLTHVQ 363 Query: 211 YSNELLDKD-----SMDQGIVRFSTFLGANINYHDYDYRQQGYGLTLTDTNLPGGSSGSL 265 +L++ D ++ G++ ++ ++YH+ +Y+ GYG L +TN PGGSSGS Sbjct: 364 -GTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNVEYKLFGYGTILNNTNFPGGSSGSA 422 Query: 266 VFNQDKKISSIY--------SAATESDSVGYAQLLRTPRDVNGISVVSQSYDLIFGDSNT 317 VFN++K+++SIY + + ++G Q+LRT N SYDLIFGD NT Sbjct: 423 VFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRTYNTNNSKHSAPSSYDLIFGDKNT 482 Query: 318 KRYYAMFAKKQQTHLYSEILKSTDEQYRYVVDKQ 351 ++YA FAK++QTHL+++I S + + DK+ Sbjct: 483 IKFYAQFAKEKQTHLWNKIQTSVNSSISFYKDKK 516 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508331|ref|NP_110281.1| hypothetical protein MPN592 [Mycoplasma pneumoniae M129] (521 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] 342 4e-096 ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] 263 2e-072 ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] 235 7e-064 >ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length = 524 Score = 342 bits (878), Expect = 4e-096, Method: Compositional matrix adjust. Identities = 206/487 (42%), Positives = 288/487 (59%), Gaps = 65/487 (13%) Query: 74 QNAEVQIKPDSSKGVYSPGFKFNTNFIPKVNTKYRPGYDLSFALKFGTSWKEAYGTGWLI 133 Q EV +P + VY+ FKFNT+FIP+ + YR GYDL+F L F + ++YGTGWLI Sbjct: 59 QGTEVNQQPKVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLI 118 Query: 134 DWKD----VKQDNKFTAYLATNLHVADSLRNKDDYKPYNKDGNQKEFLPGDITTEFSLGK 189 DWK ++ F AY+ATNLHVAD LRN D+ PY+K +Q+EF + T FS+GK Sbjct: 119 DWKGDENTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGK 178 Query: 190 YIDAQTVQKLTPEYQNLKHLNNRNSDALVSIQTSKLPKTAYTATDFIKTAQYKYNHIVSN 249 Y + + KL YQ K + +D+L+SIQTS +PKTAYTAT+F+K N Sbjct: 179 YTNKTDITKL---YQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFLKGV---------N 226 Query: 250 TVYELDLFQNAVSYADFAVXXXXXXXXXXRDQQIFDSFINPAVTAYEKLGNSLGLFSNLQ 309 ++ + YADFAV RD QIF+ FI PA+ Y+ LG+S +F Sbjct: 227 SIKPV--------YADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKD 278 Query: 310 LDQYVDDTHYLLGYPLLKR--------------EKTSYWNLPQKGYSSPLYENSN-KEVS 354 L+Q+ + +HYLLGYP+L+R +T +N + +S Y S KE+ Sbjct: 279 LEQHWNHSHYLLGYPVLERGYDQNRLLEQKEEFARTHNFNQKSQLWSKNTYLVSTAKEIP 338 Query: 355 RITRNIRKDDEIPGSRLV--QNQINYLPFAQNDPKGVMDFSKYLNYVFNYHEKQYQHHGY 412 IT+N RKD +I GS + + Q +++ KG++ F + N+ YH+K+YQ +GY Sbjct: 339 VITKNARKDGQI-GSEIFSKKTQDSHVDKVIKHEKGIVTFQNFKNFKLKYHDKEYQQYGY 397 Query: 413 GLLLEDTDFPGGSSGSPLFNQNKQINSIYFAALP----SKSY----GVSQIL-------- 456 GL+L+DT+ PGGSSGS +FN N++INSIYF L SK++ G+SQ+L Sbjct: 398 GLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGMSQLLRTSKRESE 457 Query: 457 ----RATQNKDKSKNYDLIFGDSNTKKYYAQFAKEHKTHLYHQILQSNDEQFRFVENDQT 512 R T N+DK ++YDLIFGDSNTK +YAQFAK+H THLY QI S E+F++V+ + Sbjct: 458 KNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHLYDQIKSSEKEEFKYVDKN-- 515 Query: 513 VTSQTPF 519 +TPF Sbjct: 516 -NQKTPF 521 >ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 474 Score = 263 bits (673), Expect = 2e-072, Method: Compositional matrix adjust. Identities = 172/460 (37%), Positives = 254/460 (55%), Gaps = 56/460 (12%) Query: 80 IKPDSSKGVYSPGFKFNTNFIPKVNTKYRPGYDLSFALKFGTSWKEAYGTGWLIDWK--- 136 ++P +G + +F N IP V+ Y YDL+F+L F ++ + YGTGWLIDWK Sbjct: 27 VRPQFRRGFRT---QFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGDE 83 Query: 137 -DVKQDNKFTAYLATNLHVADSLRNKDDYKPYNKDGNQKEFLPGDITTEFSLGKYIDAQT 195 + ++++ F YLATNLHV D+LRN +DY+PYNKD N + F +IT FS+GKY Sbjct: 84 NNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPSI 143 Query: 196 VQKLTPEYQNLKHLNNRNSDALVSIQTSKLPKTAYTATDFIKTAQYKYNHIVS-NTVYEL 254 +L +N R +A VSIQTS +PKTAY A +F++T ++ S +T + Sbjct: 144 FSELNF------IINAR--EAFVSIQTSTIPKTAYAAVNFVETQGEDESYTDSLSTDNKR 195 Query: 255 DLFQNAVSYADFAVXXXXXXXXXXRDQQIFDSFINPAVTAYEKLGNSLGLFSNLQLDQYV 314 D+ YADFAV RD Q+F+ FI PA+ Y++LGNS F QLDQ+ Sbjct: 196 DI------YADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNS--SFEKKQLDQHK 247 Query: 315 DDTHYLLGYPLLKREKTSYWNLPQKGYSSPLYEN-SNKEVSRITRNIRKDDEIP------ 367 +D Y+LGYPL++ + ++ Y++ E + + +++ R I E+P Sbjct: 248 NDNFYMLGYPLVESSIDALILNQRRQYNNSYTEKYTPQTLTKDQRTIDLSREVPTLIQNK 307 Query: 368 -----GSRLVQNQINYLPFAQNDPKGVMDFSKYLNYVFNYHEKQYQHHGYGLLLEDTDFP 422 GS+L+ NQ + +G+++F K + NYH K Y+ +G G L++T+F Sbjct: 308 TENSTGSQLLVNQS-----LSSTSEGIIEFIKLPEFKLNYHNKSYRQYGRGFALQNTNFR 362 Query: 423 GGSSGSPLFNQNKQINSIYFAALP-------SKSYGVSQILRATQ---NKDKS-----KN 467 GSSG+ + N KQI IYF L + GV QILR Q +++S N Sbjct: 363 PGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGVGQILRVPQKNNTRNRSIATNKSN 422 Query: 468 YDLIFGDSNTKKYYAQFAKEHKTHLYHQILQSNDEQFRFV 507 YDLIFGDSNT +YA+FA+++ THLY I S D + ++V Sbjct: 423 YDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDTKLKYV 462 >ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 516 Score = 235 bits (600), Expect = 7e-064, Method: Compositional matrix adjust. Identities = 164/471 (34%), Positives = 239/471 (50%), Gaps = 68/471 (14%) Query: 98 NFIPKVNTKYRPGYDLSFALKFGTSWKEAYGTGWLIDWKD-------------------- 137 N +PK N Y YDL+FAL F + +GTGWLIDWK Sbjct: 47 NTVPK-NNFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSIISSV 105 Query: 138 ------VKQDNK-FTAYLATNLHVADSLRNKDDYKPYNKDGNQKEFLPGDITTEFSLGKY 190 KQD+K F AY+ATNLH+ D L+N DY+PYNKDGN F T F LG++ Sbjct: 106 SNHSLKEKQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRF 165 Query: 191 IDAQTVQKLTPEYQNLKHLNNRNSDALVSIQTSKLPKTAYTATDFI-----KTAQYKYNH 245 + + K PE N + DA+V IQTS LPKTAY D I +T+ Sbjct: 166 ANPKINSK--PEEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFW 223 Query: 246 IVSNTVYELDLFQNAVSYADFAVXXXXXXXXXXRDQQIFDSFINPAVTAYEKLGNSLGLF 305 + + SYADFAV D +I+ +I PAV AY++LG+ +F Sbjct: 224 TKKQSTANFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIF 283 Query: 306 SNLQLDQYVDDTHYLLGYPLLKREKTSY-------WNLPQKGYSSPLYENSNKEVSRITR 358 + +Y+++T+YLLGYP+ K + W Q+ +S L + + + T Sbjct: 284 AKTPYAEYINNTYYLLGYPVTNNNKYQFILGQDEKWKFSQQ--TSVLKHYQKQPLQQRTV 341 Query: 359 NIRKDDEIPGSRLVQNQINYLPFAQ----------NDPKGVMDFSKYLNYVFNYHEKQYQ 408 + +DD +P ++++ ++ N G+++++ + +YH +Y+ Sbjct: 342 YVERDDGLPTLTFNEDKLTHVQGTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNVEYK 401 Query: 409 HHGYGLLLEDTDFPGGSSGSPLFNQNKQINSIYFAALPSKS--------YGVSQILRATQ 460 GYG +L +T+FPGGSSGS +FN+ KQ+ SIYF +L + + G+ QILR T Sbjct: 402 LFGYGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILR-TY 460 Query: 461 NKDKSKN-----YDLIFGDSNTKKYYAQFAKEHKTHLYHQILQSNDEQFRF 506 N + SK+ YDLIFGD NT K+YAQFAKE +THL+++I S + F Sbjct: 461 NTNNSKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSSISF 511 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508332|ref|NP_110282.1| hypothetical protein MPN593 [Mycoplasma pneumoniae M129] (122 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508333|ref|NP_110283.1| hypothetical protein MPN594 [Mycoplasma pneumoniae M129] (122 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508334|ref|NP_110284.1| GALACTOSE-6-PHOSPHATE ISOMERASE AND RIBOSE 5-PHOSPHATE ISOMERASE B; bifunctional [Mycoplasma pneumoniae M129] (152 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073069.1| ribose-5-phosphate isomerase, putative [Mycopla... 214 3e-058 >ref|NP_073069.1| ribose-5-phosphate isomerase, putative [Mycoplasma genitalium G-37] Length = 152 Score = 214 bits (546), Expect = 3e-058, Method: Compositional matrix adjust. Identities = 100/150 (66%), Positives = 121/150 (80%), Gaps = 1/150 (0%) Query: 3 MNHPIYIASDHTGLELKSLVIKHLEQQKLQVIDLGPTELDPLDDYPDYAFLLAQTMQANP 62 M+ I+IASDHTGL LK ++ +HL+ ++ V+DLGP D DDYPD+AFL+A ++ N Sbjct: 1 MSFNIFIASDHTGLTLKKIISEHLKTKQFNVVDLGPNYFDANDDYPDFAFLVADKVKKNS 60 Query: 63 NS-LGILICGTGVGVCMAANKAKGILAALVVDSKTAALARQHDDANVLCLSSRFVVPEEN 121 + LGILICGTGVGVCMAANK KG+LAALVV KTAALARQHD+ANVLCLSSRFV EN Sbjct: 61 DKDLGILICGTGVGVCMAANKVKGVLAALVVSEKTAALARQHDNANVLCLSSRFVTDSEN 120 Query: 122 IKIVDEFLQAQFEGGRHSKRVGKIIAYERE 151 IKIVD+FL+A FEGGRH +R+ KII YE+E Sbjct: 121 IKIVDDFLKANFEGGRHQRRIDKIIRYEKE 150 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508335|ref|NP_110285.1| hypothetical protein MPN596 [Mycoplasma pneumoniae M129] (569 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073070.1| hypothetical protein MG397 [Mycoplasma genitali... 566 e-163 >ref|NP_073070.1| hypothetical protein MG397 [Mycoplasma genitalium G-37] Length = 566 Score = 566 bits (1459), Expect = e-163, Method: Compositional matrix adjust. Identities = 302/548 (55%), Positives = 391/548 (71%) Query: 22 YLTIFIIVHKNQQYLEQTKALYNKLKLSNFNSVIVPFQLLRSEKKALEQPVKLLKSFQES 81 YL + + V +N L++TK LYN LKLSNFN VI PFQLLR+EK+ALEQ +K+LK FQ Sbjct: 19 YLLVCLFVRQNNLLLKKTKQLYNNLKLSNFNCVISPFQLLRNEKQALEQSIKVLKQFQIK 78 Query: 82 FNSEINSALEQLLVFSEPKALYNCFWFNRNIKLLRKNLQGLHDKQQRYVKLTKNAIAYFD 141 F++EINSA EQL V+S+P +Y WFNRNIKLL KNLQ L+ KQQ Y+ LTKNAI YF+ Sbjct: 79 FDNEINSAFEQLTVYSKPNNIYRFIWFNRNIKLLNKNLQHLYTKQQEYINLTKNAIVYFN 138 Query: 142 SSYDTLVFYRQAFCLLVSFINDFLVHKYDSLFYLNIINRISLLFKDVELHIKNKDVKQQN 201 +SYD LVFYRQAFC L FIN+FL+ KYDSLFYLN++NRISLLFK++E I+ KDV++Q Sbjct: 139 NSYDCLVFYRQAFCFLNQFINNFLIEKYDSLFYLNVLNRISLLFKEIENCIQAKDVEKQI 198 Query: 202 QALNKLHNNLAQTIITASRQYFFDVKVGYLNYHFQILSQKVTQLRSMKNKAINSQEVAKF 261 LNKLHN L+QTIITA+RQY FD+K+ YL +HF++L QKV Q+ MKNK INSQ++ K Sbjct: 199 AFLNKLHNILSQTIITANRQYMFDIKLSYLTHHFKVLIQKVKQMELMKNKVINSQDLLKL 258 Query: 262 QELITNIGATLAECSQALGNINLALCEQRINQAKEQIDVLSNAVSVKEKAISLVVSNVDS 321 ELI NI L +C+ L N+NL LCE+ +++ +E I L AVS KEK+I+LVV N+D Sbjct: 259 HELINNITIKLKDCTNFLNNLNLMLCERNMDEVQEAISWLFQAVSSKEKSINLVVENIDD 318 Query: 322 FLKSINHYQQQNALLQTLMKEIELMFQNNLDTVNIINQINEHSLLIAQKTQLLNQENALT 381 F I Y+++N LL+T +K IEL+FQN D ++I ++NE+ LI + LN ++ Sbjct: 319 FRNQIQQYEKKNELLKTTIKAIELVFQNETDVHDLIIELNENCDLITKNINNLNHQSLAQ 378 Query: 382 EFIDYEKLFRLMSEAMXXXXXXXXXXXXXFALSANKFDDYRFFVYTLDDFRFKFFQXXXX 441 I+YEKLF LMS+ L+ NKFDDYRFFVYTLDDFRFKFFQ Sbjct: 379 NQINYEKLFYLMSQTNQALEKLKNSLTDLLNLAVNKFDDYRFFVYTLDDFRFKFFQIENL 438 Query: 442 XXXXXXXXXXKTLKIISQAKHQFDDIFTQAKNDYEGAFSYLNEKVRFFQNQLTHVIVDVV 501 KTL++I+++K + D+IFT+A N+Y G F+ +EK+ Q QLT VI DVV Sbjct: 439 ISDQDLKVPAKTLQVINKSKLELDNIFTEANNNYLGTFNLFSEKIDLLQIQLTEVICDVV 498 Query: 502 GLMNLRSMCKHTFIFANKYRQESPQINESLETLTQFYQQQNYSETLSGLISLLGKIKSSA 561 L+NLR MCK F+FANKYRQ+S I+ SLE LT+ Y +QNY +TL GLI+LL KIK++ Sbjct: 499 SLVNLRLMCKQAFLFANKYRQKSSHIDRSLEQLTKLYNRQNYPDTLEGLINLLTKIKTNT 558 Query: 562 KQHHLDLN 569 KQ +L+LN Sbjct: 559 KQDYLELN 566 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508336|ref|NP_110286.1| ATP synthase epsilon chain [Mycoplasma pneumoniae M129] (133 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073071.1| ATP synthase F1, subunit epsilon (atpC) [Mycopl... 218 3e-059 >ref|NP_073071.1| ATP synthase F1, subunit epsilon (atpC) [Mycoplasma genitalium G-37] Length = 133 Score = 218 bits (554), Expect = 3e-059, Method: Compositional matrix adjust. Identities = 103/133 (77%), Positives = 121/133 (90%) Query: 1 MQPLRFLVLSPSGIKLDQAIISAQVKTTNGYLGLNYNRAPLIAAVQSHFCKILFANNTRR 60 M+ LRFLVLSPSGIKLD+ IISAQVKTT GY+GLN+NRAPLIAA+QSH CKI+FA+ T+R Sbjct: 1 MKLLRFLVLSPSGIKLDKTIISAQVKTTEGYIGLNFNRAPLIAAIQSHLCKIIFADQTKR 60 Query: 61 NAIIGAGLVLIKKTEAKIFTENFVFEDEIDLEATLKRKAELERQMNHSKDLKLNIKIEQN 120 AIIGAGL+LIKKTEAKIFTENFVF DE+D+ TLKRK ELER+++H KD KLN+KIEQN Sbjct: 61 EAIIGAGLMLIKKTEAKIFTENFVFADEVDINETLKRKTELERKIHHIKDAKLNVKIEQN 120 Query: 121 LMFELLKLSNKQR 133 LMFELLKLS+K++ Sbjct: 121 LMFELLKLSSKKK 133 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508337|ref|NP_110287.1| ATP synthase beta chain [Mycoplasma pneumoniae M129] (475 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073072.1| ATP synthase F1, subunit beta (atpD) [Mycoplasm... 891 0.0 ref|NP_073074.1| ATP synthase F1, subunit alpha (atpA) [Mycoplas... 85 1e-018 >ref|NP_073072.1| ATP synthase F1, subunit beta (atpD) [Mycoplasma genitalium G-37] Length = 476 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/469 (92%), Positives = 453/469 (96%) Query: 1 MKKENITYGKVHQVIGPVVDVIFTESSQLPRIYDCLSVKLAGEELFLEAAQLIGDDIVRC 60 +KKEN+TYGKVHQVIGPVVDVIF+ES QLPR+YDCLSV+L ELFLEA QLIGDDIVRC Sbjct: 2 IKKENLTYGKVHQVIGPVVDVIFSESKQLPRVYDCLSVQLKKSELFLEATQLIGDDIVRC 61 Query: 61 IALGPTEGLARNEKVTNYNHPIEVPVGKNVLGRMFNVLGKPIDGKEELPKKPQLPIHRKP 120 IALGPTEGLARN KVTNYNHPIEVPVGKNVLGRMFNVLG+PIDGKE LPKKP+L IHR P Sbjct: 62 IALGPTEGLARNVKVTNYNHPIEVPVGKNVLGRMFNVLGEPIDGKEPLPKKPKLSIHRNP 121 Query: 121 PSFDDQSNTLEIFETGIKVIDLLTPYARGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGL 180 P+FD+Q NT++IFETGIKVIDLLTPY RGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGL Sbjct: 122 PAFDEQPNTVDIFETGIKVIDLLTPYVRGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGL 181 Query: 181 SVFAGVGERTREGNDLYYEMIQGGVIDKTALVFGQMNEPPGARMRVALTALTMAEYFRDH 240 SVFAGVGERTREGNDLYYEMIQGGVIDKT LVFGQMNEPPGARMRVALTALTMAEYFRDH Sbjct: 182 SVFAGVGERTREGNDLYYEMIQGGVIDKTVLVFGQMNEPPGARMRVALTALTMAEYFRDH 241 Query: 241 DNQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERIASTKTGSITS 300 DNQ+VLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLA EMG+LQERIASTKTGSITS Sbjct: 242 DNQNVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAIEMGKLQERIASTKTGSITS 301 Query: 301 VQAIYVPADDLTDPAPATTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLDPNIVGIN 360 VQAIYVPADDLTDPAPATTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLDP++VGIN Sbjct: 302 VQAIYVPADDLTDPAPATTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLDPSVVGIN 361 Query: 361 HYKVALGVQNILQRFAELQDIIAILGIDELADEDKIIVERARRIRNFLSQPFFVAEKFSG 420 HYKVALGVQNILQRFAELQDIIAILGIDEL+DEDKIIVERARRIRNFLSQPFFVAEKFSG Sbjct: 362 HYKVALGVQNILQRFAELQDIIAILGIDELSDEDKIIVERARRIRNFLSQPFFVAEKFSG 421 Query: 421 IAGKYVPLSDTIQSFKEILDGKHDDLPEQAFFFVGTIQEAVEKAKRLKK 469 IAGKYV L+DT+QSFKEIL+GKHD LPEQAFF+VGTIQEAVEKAKRL + Sbjct: 422 IAGKYVSLNDTVQSFKEILEGKHDHLPEQAFFYVGTIQEAVEKAKRLNQ 470 >ref|NP_073074.1| ATP synthase F1, subunit alpha (atpA) [Mycoplasma genitalium G-37] Length = 518 Score = 85.1 bits (209), Expect = 1e-018, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 147/335 (43%), Gaps = 11/335 (3%) Query: 82 IEVPVGKNVLGRMFNVLGKPIDGKEELPKKPQLPIHRKPPSFDDQSNTLEIFETGIKVID 141 ++ PVG +LGR+ N LG+ IDG+ ++ I + P + + + ETGI ID Sbjct: 95 MKTPVGDVMLGRIVNALGEAIDGRGDIKATEYDQIEKIAPGVMKRKSVNQPLETGILTID 154 Query: 142 LLTPYARGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGLSVFAGVGERTREGNDLYYEMI 201 L P +G + + G GKT + + I N K+ V+ +G++ + +++ Sbjct: 155 ALFPIGKGQRELIVGDRQTGKTAIAIDTIIN-QKDKDVYCVYVAIGQKNSSVAQIVHQLE 213 Query: 202 QGGVIDKTALVFGQMNEPPGARMRVALTALTMAEYFRDHDNQDVLLFIDNIFRFTQAGSE 261 + T +V ++ T +T+AEY+ +DVL+ D++ + A Sbjct: 214 VNDSMKYTTVVCATASDSDSMVYLSPFTGITIAEYWL-KKGKDVLIVFDDLSKHAVAYRT 272 Query: 262 VSALLGRMPSAVGYQPTLATEMGQLQERIASTKT----GSITSVQAIYVPADDLTDPAPA 317 +S LL R P + + +L ER GSIT++ I A D++ P Sbjct: 273 LSLLLKRPPGREAFPGDVFYLHSRLLERACKLNDENGGGSITALPIIETQAGDISAYIPT 332 Query: 318 TTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLD-PNIVGINHYKVALGVQNILQRFA 376 + D + + ++ G PAI S SR+ I +L ++ L +++ Sbjct: 333 NVISITDGQLFMVSSLFNAGQRPAIQIGLSVSRVGSAAQTKAIKQQTGSLKLE--LAQYS 390 Query: 377 ELQDIIAILGIDELADEDKIIVERARRIRNFLSQP 411 EL D + G D L + K ++E +R+ + QP Sbjct: 391 EL-DSFSQFGSD-LDENTKKVLEHGKRVMEMIKQP 423 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508338|ref|NP_110288.1| ATP synthase gamma chain [Mycoplasma pneumoniae M129] (279 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073073.1| ATP synthase F1, subunit gamma (atpG) [Mycoplas... 398 e-113 >ref|NP_073073.1| ATP synthase F1, subunit gamma (atpG) [Mycoplasma genitalium G-37] Length = 279 Score = 398 bits (1022), Expect = e-113, Method: Compositional matrix adjust. Identities = 188/269 (69%), Positives = 222/269 (82%) Query: 1 MAFIQEIKRKMTTVQSTIKITNAMKMVSRAKFVRFKKQFKEVNYFFNEFYKAVGQVVLSL 60 MAFIQEIKR+M TV+STIKITNAMKMVSRAKF++FKKQF+E++ FFNEFYKAVGQVV+SL Sbjct: 1 MAFIQEIKRRMNTVKSTIKITNAMKMVSRAKFIKFKKQFQEISLFFNEFYKAVGQVVVSL 60 Query: 61 KKMPKPLENPKTLWVMMSSSLGLCGQHNTNMNKLLQTKFQPGDKIFFLGRKNQSFWNKGD 120 K+ K +N KTLW+MMSSSLGLCGQHN+NMNKLL+ F+ DKIFFLGRKNQSFWNK Sbjct: 61 KEPKKKPDNQKTLWIMMSSSLGLCGQHNSNMNKLLKANFKADDKIFFLGRKNQSFWNKNS 120 Query: 121 TDNPTVGYVDIQDRDLSFDYCQQVSDQIMEQFDLHQLDRICIIYTQFKNPLIQHANSFQV 180 NP VG++DIQDRD++FDYCQ + DQIM+ F +LDRIC++YT+FKN LIQ + FQV Sbjct: 121 QYNPAVGFIDIQDRDINFDYCQTIFDQIMDAFKEFKLDRICMVYTKFKNSLIQQSQLFQV 180 Query: 181 FPFDVAMFKAFNPVKMEQKLDFEPDEETIIKLISPQFFDIALYGGLVETKLCESASRQXX 240 FPFDV FK NPV +Q+LDFEPD+ TII LI+PQFFD+ALYGGLVETKLCESASRQ Sbjct: 181 FPFDVETFKTLNPVVTDQQLDFEPDQATIINLITPQFFDVALYGGLVETKLCESASRQNA 240 Query: 241 XXXXXXXXXXLYEKYSIQFNKLRQNSITQ 269 L +KY++QFNKLRQNSIT+ Sbjct: 241 MEAATKNAKDLLDKYTLQFNKLRQNSITE 269 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508339|ref|NP_110289.1| ATP synthase alpha chain [Mycoplasma pneumoniae M129] (518 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073074.1| ATP synthase F1, subunit alpha (atpA) [Mycoplas... 944 0.0 ref|NP_073072.1| ATP synthase F1, subunit beta (atpD) [Mycoplasm... 96 1e-021 >ref|NP_073074.1| ATP synthase F1, subunit alpha (atpA) [Mycoplasma genitalium G-37] Length = 518 Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/517 (86%), Positives = 490/517 (94%) Query: 1 MADKLNEYVALIKNEIKKYSKQIFNSEIGKVISVADGIAKVSGLENALLNELIEFENNVQ 60 MADKLNEYVALIK EIKKYSK+IFNSEIG+VISVADGIAKVSGLENALLNELI+FENN+Q Sbjct: 1 MADKLNEYVALIKTEIKKYSKKIFNSEIGQVISVADGIAKVSGLENALLNELIQFENNIQ 60 Query: 61 GIALNLEQNTVGVALFGDYSKIREGSTAKRTHNVMQTPVGDVMLGRIVNALGEPVDGRGP 120 GI LNLEQNTVG+ALFGDYS +REGSTAKRTH+VM+TPVGDVMLGRIVNALGE +DGRG Sbjct: 61 GIVLNLEQNTVGIALFGDYSSLREGSTAKRTHSVMKTPVGDVMLGRIVNALGEAIDGRGD 120 Query: 121 IKAEEFDQVEKIAPGVMTRKTVNQPLETGILTIDALFPIGKGQRELIVGDRQTGKTSIAI 180 IKA E+DQ+EKIAPGVM RK+VNQPLETGILTIDALFPIGKGQRELIVGDRQTGKT+IAI Sbjct: 121 IKATEYDQIEKIAPGVMKRKSVNQPLETGILTIDALFPIGKGQRELIVGDRQTGKTAIAI 180 Query: 181 DTIINQRGKDVYCVYVAMGQKNSSVAQIVHQLEVTDSMKYTTVVCATASDPASMIYLTPF 240 DTIINQ+ KDVYCVYVA+GQKNSSVAQIVHQLEV DSMKYTTVVCATASD SM+YL+PF Sbjct: 181 DTIINQKDKDVYCVYVAIGQKNSSVAQIVHQLEVNDSMKYTTVVCATASDSDSMVYLSPF 240 Query: 241 TGITIAEYWLKQGKDVLIVFDDLSKHAIAYRTLSLLLRRPPGREAFPGDVFYLHSRLLER 300 TGITIAEYWLK+GKDVLIVFDDLSKHA+AYRTLSLLL+RPPGREAFPGDVFYLHSRLLER Sbjct: 241 TGITIAEYWLKKGKDVLIVFDDLSKHAVAYRTLSLLLKRPPGREAFPGDVFYLHSRLLER 300 Query: 301 ACRLNEEHGGGSITALPIIETQAGDISAYIPTNVISITDGQLFMVSNLFNSGQRPAIHVG 360 AC+LN+E+GGGSITALPIIETQAGDISAYIPTNVISITDGQLFMVS+LFN+GQRPAI +G Sbjct: 301 ACKLNDENGGGSITALPIIETQAGDISAYIPTNVISITDGQLFMVSSLFNAGQRPAIQIG 360 Query: 361 LSVSRVGSAAQIKAIKQQTGSLKLELAQYSELDSFSQFGSDLDENTKQILERGKRVMEMI 420 LSVSRVGSAAQ KAIKQQTGSLKLELAQYSELDSFSQFGSDLDENTK++LE GKRVMEMI Sbjct: 361 LSVSRVGSAAQTKAIKQQTGSLKLELAQYSELDSFSQFGSDLDENTKKVLEHGKRVMEMI 420 Query: 421 KQPNGKPYSQTHEALFLFAIAKSFIKFIPLDYIAKFKQRIMEEFDKEHPIYKEIATQKSF 480 KQPNGKPYSQ HEALFLFAI K+FIKFIP+D IAKFKQRI EEF+ HP++KE++ +K F Sbjct: 421 KQPNGKPYSQVHEALFLFAINKAFIKFIPVDEIAKFKQRITEEFNGSHPLFKELSNKKEF 480 Query: 481 SEALEAQTNTAFKALVKRFVSALPDYDITKYGTMEEL 517 +E LE++T TAFK LVKRF+S L DYDITK+G++EEL Sbjct: 481 TEDLESKTKTAFKMLVKRFISTLTDYDITKFGSIEEL 517 >ref|NP_073072.1| ATP synthase F1, subunit beta (atpD) [Mycoplasma genitalium G-37] Length = 476 Score = 95.9 bits (237), Expect = 1e-021, Method: Compositional matrix adjust. Identities = 87/335 (25%), Positives = 149/335 (44%), Gaps = 11/335 (3%) Query: 95 MQTPVGDVMLGRIVNALGEPVDGRGPIKAEEFDQVEKIAPGVMTRKTVNQPLETGILTID 154 ++ PVG +LGR+ N LGEP+DG+ P+ + + + P + ETGI ID Sbjct: 83 IEVPVGKNVLGRMFNVLGEPIDGKEPLPKKPKLSIHRNPPAFDEQPNTVDIFETGIKVID 142 Query: 155 ALFPIGKGQRELIVGDRQTGKTSIAIDTIIN-QRGKDVYCVYVAMGQKNSSVAQIVHQLE 213 L P +G + + G GKT + + I N + V+ +G++ + +++ Sbjct: 143 LLTPYVRGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGLSVFAGVGERTREGNDLYYEMI 202 Query: 214 VTDSMKYTTVVCATASDPASMIYLTPFTGITIAEYWLKQ-GKDVLIVFDDLSKHAIAYRT 272 + T +V ++P T +T+AEY+ ++VL+ D++ + A Sbjct: 203 QGGVIDKTVLVFGQMNEPPGARMRVALTALTMAEYFRDHDNQNVLLFIDNIFRFTQAGSE 262 Query: 273 LSLLLRRPPGREAFPGDVFYLHSRLLERACRLNEEHGGGSITALPIIETQAGDISAYIPT 332 +S LL R P + + +L ER GSIT++ I A D++ P Sbjct: 263 VSALLGRMPSAVGYQPTLAIEMGKLQERIASTKT----GSITSVQAIYVPADDLTDPAPA 318 Query: 333 NVISITDGQLFMVSNLFNSGQRPAIHVGLSVSRV--GSAAQIKAIKQQTGSLKLELAQYS 390 + D + + N+ G PAI+ S SR+ S I K G + L +++ Sbjct: 319 TTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLDPSVVGINHYKVALGVQNI-LQRFA 377 Query: 391 EL-DSFSQFGSD-LDENTKQILERGKRVMEMIKQP 423 EL D + G D L + K I+ER +R+ + QP Sbjct: 378 ELQDIIAILGIDELSDEDKIIVERARRIRNFLSQP 412 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508340|ref|NP_110290.1| ATP synthase delta chain [Mycoplasma pneumoniae M129] (178 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073075.1| ATP synthase F1, subunit delta (atpH) [Mycoplas... 271 3e-075 >ref|NP_073075.1| ATP synthase F1, subunit delta (atpH) [Mycoplasma genitalium G-37] Length = 176 Score = 271 bits (693), Expect = 3e-075, Method: Compositional matrix adjust. Identities = 127/175 (72%), Positives = 156/175 (89%) Query: 1 MINAQAFGMALFQLSEEEKKVKKVYDQSHDFLKLARNFKDGSLAALLNAYTLTKKEKLKL 60 MINAQAFG ALFQLSEE+K+VKK+Y++ H FLKL RNFKDGSL+ LLN+YTLTK +K++L Sbjct: 1 MINAQAFGTALFQLSEEQKQVKKIYEECHFFLKLMRNFKDGSLSFLLNSYTLTKPDKIRL 60 Query: 61 IDKLFKNHFCDLFVDFLKTIVLKGYFNLVEQALKYFFDCVENEKHVQFIRIITAFELSAP 120 +DKLFKNHFC +FVDFLK I+LKGYF LVEQA+KYFFD VE++KH+QFI+IITAFELS+ Sbjct: 61 VDKLFKNHFCQVFVDFLKVIILKGYFTLVEQAIKYFFDNVESQKHIQFIKIITAFELSSK 120 Query: 121 QLKRIVAAMEKKLNSKIVYKTEIDKSLISGIRIESSAQLFEKNIRDQLSRLMEQF 175 QL +I+A MEK+ +K+VYKTEID+SLISGIRIESS+ LFEKN+RD+L R+M F Sbjct: 121 QLNKIIAIMEKRFKTKVVYKTEIDRSLISGIRIESSSHLFEKNVRDELKRIMAHF 175 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508341|ref|NP_110291.1| ATP synthase B chain [Mycoplasma pneumoniae M129] (207 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073076.1| ATP synthase F0, subunit B (atpF) [Mycoplasma g... 209 3e-056 >ref|NP_073076.1| ATP synthase F0, subunit B (atpF) [Mycoplasma genitalium G-37] Length = 208 Score = 209 bits (531), Expect = 3e-056, Method: Compositional matrix adjust. Identities = 109/180 (60%), Positives = 128/180 (71%) Query: 28 CTENVKEIKSESVINELFPNLWXXXXXXXXXXXXXXXXXXXXWKPTQKFLNQRKALLEEQ 87 CTENV+EIKS SVINELFPN W WKPTQ+FLN RK LLE Q Sbjct: 28 CTENVREIKSSSVINELFPNFWVFITHLLAFFILLTLMIFLFWKPTQRFLNNRKNLLEAQ 87 Query: 88 VXXXXXXXXXXXXXXXXXXXRHENSLVVAKEIVDQANYEALQLKSEIEKKANRQANLMIF 147 + RHE +L+V+KEIVDQANYEALQLKSEIEK ANRQANLMIF Sbjct: 88 IKQANELEKQARNLLEESNQRHEKALIVSKEIVDQANYEALQLKSEIEKTANRQANLMIF 147 Query: 148 QARQEIEKEKRLIQEQSLKESVELAMLAAKELIIKKVDVKADKAFIEEFIRELEAEDDHD 207 QARQEIEKE+R ++EQS+KESVELAMLAA+ELI+KK+D K+D+ FI++FIR+LEA + D Sbjct: 148 QARQEIEKERRSLKEQSIKESVELAMLAAQELILKKIDQKSDREFIDKFIRDLEANETED 207 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508342|ref|NP_110292.1| ATP synthase C chain [Mycoplasma pneumoniae M129] (105 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073077.1| ATP synthase F0, subunit C (atpE) [Mycoplasma g... 121 2e-030 >ref|NP_073077.1| ATP synthase F0, subunit C (atpE) [Mycoplasma genitalium G-37] Length = 102 Score = 121 bits (304), Expect = 2e-030, Method: Compositional matrix adjust. Identities = 65/106 (61%), Positives = 77/106 (72%), Gaps = 5/106 (4%) Query: 1 MEHVNEILATVGRILHET-TTANTNVANKSTERLGAYIGAGITMVGGATVGLGQGYIFGK 59 MEHVNEILATVG IL +T TT + N ++ +LGAYIGAG+TM+ G+TVG+GQGYIFGK Sbjct: 1 MEHVNEILATVGVILQQTQTTQDVN----ASAKLGAYIGAGVTMIAGSTVGIGQGYIFGK 56 Query: 60 AVEAVARNPEVEKQVFKLXXXXXXXXXXXXXXXXXXAFILIFVSGA 105 AVEA+ARNPEVEKQVFKL +FILIFV+GA Sbjct: 57 AVEAIARNPEVEKQVFKLIFIGSAVSESTAIYGLLISFILIFVAGA 102 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508343|ref|NP_110293.1| ATP synthase A chain [Mycoplasma pneumoniae M129] (293 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073078.1| ATP synthase F0, subunit A (atpB) [Mycoplasma g... 342 2e-096 >ref|NP_073078.1| ATP synthase F0, subunit A (atpB) [Mycoplasma genitalium G-37] Length = 292 Score = 342 bits (877), Expect = 2e-096, Method: Compositional matrix adjust. Identities = 166/290 (57%), Positives = 198/290 (68%) Query: 1 MSPRAIVLKEPNGVNLVPHEGIFDISPVAGWKPLLPTDQXXXXXXXXXXXXXXXXXYWIK 60 MSPR IVLKE N ++ + ++ IFDISP++GWKP PTDQ Y +K Sbjct: 1 MSPREIVLKETNQIDFISNQSIFDISPISGWKPFAPTDQILGIFIVFVLLLTFFIFYKLK 60 Query: 61 LRKADPLRNHSSFVLLMQMLFVWAQDTTADLIGEENKKFTPYFXXXXXXXXXXXXXXXXG 120 L+KAD L+N+S F+LL QMLFVW QDTTADL+GEENKKF PYF G Sbjct: 61 LKKADSLKNNSYFLLLFQMLFVWVQDTTADLLGEENKKFAPYFLMLLLYIVSSNLVSLLG 120 Query: 121 GIXXXXXXXXXXXXXXXXXXXXIVIMGIRYQRWSFFKSFTFNITIKGKKYSTLIPNPLSF 180 GI IV+MGIRYQRW+FFK F F IT+KGKKYST IPNP S Sbjct: 121 GISPPTSSLTFTFSLGLATFIGIVVMGIRYQRWNFFKEFAFGITVKGKKYSTFIPNPFSI 180 Query: 181 LGEFAPLFSISLRLWGNILGGTLILALFYNFWFFAFSTLSNKPLALSLGAIFAGILTPAL 240 L FAPLFSISLRLWGNIL GT+ILALFYNFW F FS+++N+PLALSLG +FAG++TP L Sbjct: 181 LSGFAPLFSISLRLWGNILAGTVILALFYNFWIFIFSSINNQPLALSLGTVFAGLITPVL 240 Query: 241 HVYFDVVVGTLQGYVFVMLTYNYWAKMRNIGLEESQEAAQRLQNLEVAKE 290 H+YFDV+ G LQGYVFVMLTYNYWAKMRN GLE + + + ++V +E Sbjct: 241 HIYFDVIAGVLQGYVFVMLTYNYWAKMRNQGLENNNASELHFKGIKVIQE 290 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508344|ref|NP_110294.1| hypothetical protein MPN605 [Mycoplasma pneumoniae M129] (157 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073079.1| hypothetical protein MG406 [Mycoplasma genitali... 134 4e-034 >ref|NP_073079.1| hypothetical protein MG406 [Mycoplasma genitalium G-37] Length = 113 Score = 134 bits (337), Expect = 4e-034, Method: Compositional matrix adjust. Identities = 64/113 (56%), Positives = 82/113 (72%) Query: 45 LLPFPFVALSVVGLLKLGDFFEKFKHLSKQRVTVFFGSFFVARYLLYLIPVLLAFFIRPQ 104 +LP PF L+ + +L+L FF K++ KQ+ FF FF ARYL+YLIPV+++F + P Sbjct: 1 MLPLPFAVLNSLSVLRLASFFASLKNVKKQKAVSFFAFFFTARYLIYLIPVIISFVVTPS 60 Query: 105 YFHVIATIISTLFFPLLKIVISFAWLPLEYHCKNLISKLNKKHVTTGDSFKRT 157 F+ IATIISTLFFP+L +V+SF WLPLEY NLISK +KHV TGDSFKR Sbjct: 61 IFNTIATIISTLFFPILNLVLSFVWLPLEYFFINLISKSKRKHVATGDSFKRN 113 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508345|ref|NP_110295.1| enolase (eno) [Mycoplasma pneumoniae M129] (456 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073080.1| enolase (eno) [Mycoplasma genitalium G-37] 712 0.0 >ref|NP_073080.1| enolase (eno) [Mycoplasma genitalium G-37] Length = 458 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/444 (76%), Positives = 381/444 (85%) Query: 11 KIADLFAYQVFDSRGFPTVACVVKLASGHTGEAMVPSGASTGEKEAIELRDGDPKAYFGK 70 KI D+FAYQVFDSRG PTVACVVKLASGH GEAMVPSGASTGEKEAIELRD DPK YFGK Sbjct: 11 KITDIFAYQVFDSRGVPTVACVVKLASGHVGEAMVPSGASTGEKEAIELRDNDPKNYFGK 70 Query: 71 GVSQAVQNVNQTIAPKLIGLNATDQAAIDALMIQLDGTPNKAKLGANXXXXXXXXXXXXX 130 GV++AV NVN+ IAPKLIGLNA DQ +D MI+LD TPNKAKLGAN Sbjct: 71 GVNEAVDNVNKVIAPKLIGLNAFDQLTVDQAMIKLDNTPNKAKLGANAILSVSLAVSKAA 130 Query: 131 XXXQKTSLFKYLANQVMGLNKTEFILTVPMLNVINGGAHADNNIDFQEFMIMPLGANSMH 190 Q +SLF+Y++N+++GLN T F+L VPMLNVINGGAHADN IDFQEFMIMPLGA MH Sbjct: 131 AKAQNSSLFQYISNKLIGLNTTNFVLPVPMLNVINGGAHADNYIDFQEFMIMPLGAKKMH 190 Query: 191 QALKMASETFHALQKLLKQRGLNTNKGDEGGFAPNLKLAEEALDLMVEAIKAAGYQPGSD 250 +ALKMASETFHALQ LLK+RGLNTNKGDEGGFAPNLKLAE+ALD+MVEAIK AGY+P D Sbjct: 191 EALKMASETFHALQNLLKKRGLNTNKGDEGGFAPNLKLAEDALDIMVEAIKLAGYKPWDD 250 Query: 251 IAIALDVAASEFYDDTTKRYVFKKGIKAKILDEKEWSLTTAQMIAYLKKLTEQYPIISIE 310 IAIA+DVAASEFYD+ K YVFKKGIKA IL+ K+WSLT+ +MIAYL+KLT++YPIISIE Sbjct: 251 IAIAIDVAASEFYDEDKKLYVFKKGIKANILNAKDWSLTSKEMIAYLEKLTKKYPIISIE 310 Query: 311 DGLSEHDWEGMETLTKTLGQHIQIVGDDLYCTNPAIAEKGVAHKATNSILIKLNQIGTLT 370 DGLSE+DWEGM LTKT+G HIQIVGDD YCTN +A+KGVA TNSILIKLNQIG+++ Sbjct: 311 DGLSENDWEGMNQLTKTIGSHIQIVGDDTYCTNAELAKKGVAQNTTNSILIKLNQIGSIS 370 Query: 371 ETIKAINIAKDANWSQVISHRSGETEDTTIADLAVAACTGQIKTGSMSRSERIAKYNRLL 430 ETI+ I +AK ANWSQVISHRSGETEDTTIADLAVAA TGQIKTGSMSRSERIAKYNRLL Sbjct: 371 ETIQTIEVAKKANWSQVISHRSGETEDTTIADLAVAAQTGQIKTGSMSRSERIAKYNRLL 430 Query: 431 QIELELGNNAKYLGWNTFKNIKPQ 454 IE+ELG+ KYLGWNTF NIKP+ Sbjct: 431 YIEIELGDKGKYLGWNTFTNIKPK 454 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508346|ref|NP_110296.1| peptide methionine sulfoxide reductase [Mycoplasma pneumoniae M129] (157 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073081.1| peptide methionine sulfoxide reductase (pmsR) [... 266 6e-074 >ref|NP_073081.1| peptide methionine sulfoxide reductase (pmsR) [Mycoplasma genitalium G-37] Length = 157 Score = 266 bits (681), Expect = 6e-074, Method: Compositional matrix adjust. Identities = 121/157 (77%), Positives = 141/157 (89%) Query: 1 MKQIYFGGGCFWGTQKYFDLIKGVQKTSVGYLNSNMKNPTYEQVCSGQTNAVEAVFVEYD 60 MK+IYFGGGCFWG +KYF LIKGV+KTSVGYLNS ++NP+YEQVCSG TNAVEAV VEY+ Sbjct: 1 MKEIYFGGGCFWGIEKYFQLIKGVKKTSVGYLNSRIRNPSYEQVCSGYTNAVEAVKVEYE 60 Query: 61 ENKVSLNELIDAFFKVIDPTIRNRQGNDIGTQYRTGVYWVDPQDEQLITQKFRELQANYP 120 E ++SL+ELI+A F+VIDPTIRNRQGNDIGTQYRTG+YW D DE++I KF +LQ NY Sbjct: 61 EKEISLSELIEALFEVIDPTIRNRQGNDIGTQYRTGIYWTDSSDEKIINDKFLKLQKNYS 120 Query: 121 KPIVTENRAMENYFLAEEYHQDYLKKNPHGYCHIKFD 157 KPIVTEN+ +ENY+LAEEYHQDYLKKNP+GYCHIKFD Sbjct: 121 KPIVTENKKVENYYLAEEYHQDYLKKNPNGYCHIKFD 157 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508347|ref|NP_110297.1| phosphate transport system regulatory protein [Mycoplasma pneumoniae M129] (225 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073082.1| regulatory protein, putative [Mycoplasma genita... 355 e-100 >ref|NP_073082.1| regulatory protein, putative [Mycoplasma genitalium G-37] Length = 225 Score = 355 bits (911), Expect = e-100, Method: Compositional matrix adjust. Identities = 169/225 (75%), Positives = 200/225 (88%) Query: 1 MESINYQILKRSEKKLLGLFFDYFQHVIKMHETLNKLLCEADVTKREKLIQAIYEMEDFS 60 ME+INYQILKRSEKKLL LFF+YF+HVI HETLN+LLCE ++ KR++LI+ IYEMED S Sbjct: 1 MENINYQILKRSEKKLLKLFFEYFKHVINAHETLNQLLCEDNLEKRKELIKTIYEMEDQS 60 Query: 61 NKSEFKLINESIWAISKNSPLTNHLRLTITIIMCSRDLERICDYANNLTKFVKHYQHLDV 120 N+SEFKLINESIW ISKNSPL +HLRLTITIIM SRDLERICDYANNLTKF++HY HLD+ Sbjct: 61 NRSEFKLINESIWTISKNSPLASHLRLTITIIMSSRDLERICDYANNLTKFIEHYLHLDI 120 Query: 121 SIFSKLVNLHKSVLNNLKQTFASLQDKEKPLTIQFENVTKILTEFEQQYRVVLTEYYDKV 180 IF+ LV LH+S LNNLK+TF SLQDKEKPLT+QFEN TK + EFE QYR+VLT+YY+ + Sbjct: 121 KIFNNLVTLHQSALNNLKKTFESLQDKEKPLTLQFENATKTIIEFEHQYRLVLTKYYETI 180 Query: 181 KDEKLSDRIFLIDLILSVKHIERINDYCYNIIKAFLFVKNPEVFN 225 ++++RIFLIDL+ SVKHIERINDYCYNIIK+FLF+KNPE+FN Sbjct: 181 NKNEVTERIFLIDLVASVKHIERINDYCYNIIKSFLFIKNPEIFN 225 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508348|ref|NP_110298.1| phosphate specific [Mycoplasma pneumoniae M129] (329 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 533 e-154 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 99 8e-023 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 87 2e-019 ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasm... 84 2e-018 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 82 8e-018 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 81 1e-017 ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding prote... 77 3e-016 ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasm... 77 3e-016 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 75 9e-016 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 74 2e-015 ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasm... 72 7e-015 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 70 3e-014 ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding prote... 70 4e-014 ref|NP_072781.1| galactoside ABC transporter, ATP-binding protei... 65 1e-012 ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasm... 60 2e-011 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 533 bits (1374), Expect = e-154, Method: Compositional matrix adjust. Identities = 259/329 (78%), Positives = 286/329 (86%) Query: 1 MKKGLKTIWHNFIQKREKVKQYRALYEKQIKQYQQKVAKLDPTTKAEEIANLQSEIDVLQ 60 M+K +K +W NF K EK+K YR LYE+QIK+Y++K+ L+ T A EI+ +++EI++L Sbjct: 1 MEKNIKALWKNFQLKLEKIKHYRKLYEQQIKEYKKKITGLNNETDANEISRIKNEIEILN 60 Query: 61 RLIKIKNTXXXXXXXXXXXXXXFEIENLNFWYNKDKQVLFDINLKIKRNKITALIGKSGC 120 RLIKIKNT FEI N NFWYNK+KQVLFDINL IKRNKITALIGKSGC Sbjct: 61 RLIKIKNTKDNVIKKDFDEKNVFEIRNFNFWYNKNKQVLFDINLDIKRNKITALIGKSGC 120 Query: 121 GKSTFIRCLNKLNDLNENVRWNGKIFFLGKNINSGIINDLTLRTRVGMVFQQLTPFNFSI 180 GKSTFIRCLNKLNDLNEN RW G I+FLGKNINSGIINDLTLRT VGMVFQ+LTPFNFSI Sbjct: 121 GKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGIINDLTLRTSVGMVFQKLTPFNFSI 180 Query: 181 FENIAYGLRAHGIHNKQAIHEIVEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARA 240 FENIAYG+RAHGIHNK AI+EIV QAL S ALWDEVKDNLHRNANTLSGGQQQRLCIARA Sbjct: 181 FENIAYGIRAHGIHNKNAINEIVRQALISAALWDEVKDNLHRNANTLSGGQQQRLCIARA 240 Query: 241 IALQPDVLLMDEPTSALDSIATNSIELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFAN 300 IALQPDVLLMDEPTSALDSIATNSIELLIQQLKEK+TI+IVTHSMAQTIRITDETIFFA+ Sbjct: 241 IALQPDVLLMDEPTSALDSIATNSIELLIQQLKEKFTIVIVTHSMAQTIRITDETIFFAD 300 Query: 301 GRVVEQGTTKQIFTRPKQKETNRYISGRN 329 GRV+EQGTTKQIFT+PKQK TN YISG+N Sbjct: 301 GRVIEQGTTKQIFTKPKQKATNSYISGKN 329 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 98.6 bits (244), Expect = 8e-023, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 115/224 (51%), Gaps = 9/224 (4%) Query: 93 NKDKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGKNI 152 N +V+ D + ++N+I +IG SG GKST + N L N+ W I+ K Sbjct: 31 NNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIYIGAKQ- 89 Query: 153 NSGIINDLTLRTRVGMVFQ--QLTPFNFSIFENIAYGLRAHGIHNKQAIHEIVEQALKST 210 I N LR + +VFQ + F ++ ++I +G A G Q+ ++ ++A Sbjct: 90 -RKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALG----QSKYDARQKAAYYL 144 Query: 211 ALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQ 270 + L RN LSGGQ++R+ IA +A++P++L+ DEPT+ LD + LI+ Sbjct: 145 EMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQLIK 204 Query: 271 QLKEKY-TIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIF 313 K++ T+ ++TH M + + D + A G++V+ + ++F Sbjct: 205 TAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVF 248 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 87.4 bits (215), Expect = 2e-019, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 121/233 (51%), Gaps = 21/233 (9%) Query: 87 NLNFWYNKDKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIF 146 N+ F YN + ++ +++ + + ++G +G GKST + L L L G+I Sbjct: 13 NVAFSYN-ELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGL--LKPQA---GEIK 66 Query: 147 FLGKNINSGIINDLTLRTRVGMVFQQLTPFN----FSIFENIAYGLRAHGIHNKQAIHEI 202 GK ++ N LR +G++FQ P N ++ ++IA+GL + ++Q I I Sbjct: 67 IFGKTVDFD--NVSYLRNNIGIIFQN--PDNQFIGITVEDDIAFGLE-NKCFSRQKIKAI 121 Query: 203 VEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIAT 262 +++ T +K H LSGGQ+QR+ IA +AL P +++ DE T+ LD A Sbjct: 122 IDEVTLQTQTDGFIKQEPHN----LSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAK 177 Query: 263 NSI-ELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFT 314 +I + +++ K+ +I +TH M + + D+ + G++++QG ++FT Sbjct: 178 KTIKQFMVKLAKQGKCVISITHDMEEVTK-ADKVLVMNEGKLIKQGKPVEVFT 229 >ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 589 Score = 83.6 bits (205), Expect = 2e-018, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 120/252 (47%), Gaps = 34/252 (13%) Query: 86 ENLNFWYNKDKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKI 145 EN+ F YNKDK L IN +K + A++G +G GKST I L K + GKI Sbjct: 355 ENVAFGYNKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYK-----PFEGKI 409 Query: 146 FFLGKNINSGIINDLT---LRTRVGMVFQQLTPFNFSIFENIAYGLRAHGIHNKQAIHEI 202 + +++ I+D+T R ++ +V Q F+ +I ENI G + A + Sbjct: 410 Y-----MDNFEISDVTKKAWREKISIVLQDSFLFSGTIKENIRLG-------RQDATDDE 457 Query: 203 VEQALKSTALWDEV-------KDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTS 255 + A K+ D + + A+ LS G++Q L IARA+ VLL+DE TS Sbjct: 458 IIAACKTANAHDFIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATS 517 Query: 256 ALDSIATNSIELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQI--- 312 ++D + I+ I +L + T I++H ++ IR + +G+V+E G Q+ Sbjct: 518 SVDVHSEKLIQESIGRLMKNKTSFIISHRLS-IIRDATLIMVINDGKVLEMGNHDQLMKQ 576 Query: 313 ---FTRPKQKET 321 + R KQ Sbjct: 577 NGFYARLKQSSV 588 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 82.0 bits (201), Expect = 8e-018, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 38/224 (16%) Query: 97 QVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGKNINSGI 156 +L D++L+I +I ++G SG GK+T + + + ++ + S I Sbjct: 103 SILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSIS---------------LGSCI 147 Query: 157 INDLTL------------RTRVGMVFQQLTPFNF-SIFENIAYGLRAHGIHNKQAIHEIV 203 + + L + +G V+Q+ S ++NIA + + I Q +I Sbjct: 148 VANCPLEKCTSEQLLTYRKNNLGYVYQRYNLIELLSAYDNIA--ISQNLIPKYQRRLDIE 205 Query: 204 EQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATN 263 E A K ++K+ L++ +SGGQ+QR+ IARAI +P +LL DEPT ALDS + Sbjct: 206 ELAEKL-----DIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAE 260 Query: 264 SIELLIQQLKEKY--TIIIVTHSMAQTIRITDETIFFANGRVVE 305 +I L+Q + + Y TI++VTH ++ T RI + I ++G++V Sbjct: 261 NIINLLQTINKTYKQTILMVTHDVSLT-RIANRIIKISDGKIVS 303 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 81.3 bits (199), Expect = 1e-017, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 24/214 (11%) Query: 98 VLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGKNINSGII 157 VL ++L IK + ++G SG GK+T + ++ ++ + +G + G N+ + Sbjct: 251 VLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRAS-----SGSVIVNGYNM--ICL 303 Query: 158 NDLTL----RTRVGMVFQQ--LTPFNFSIFENIAYGLRAHGIHNKQAIHEIVEQALKSTA 211 ND L + VG +FQQ L P N ++ ENI G +K+ I AL Sbjct: 304 NDRKLTKFRQKYVGYIFQQYGLLP-NLTVRENIEIGANLQPDPSKR----ISIDALLEAV 358 Query: 212 LWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQ 271 D ++ L N LSGGQQQR+ IARA A P ++ DEPT ALD T + Sbjct: 359 GMDSLQKKL---PNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLA 415 Query: 272 LKEKY--TIIIVTHSMAQTIRITDETIFFANGRV 303 +K++Y T+IIVTH+ + D I+ A+G++ Sbjct: 416 IKKRYQTTMIIVTHNNL-IANLADLVIYVADGKI 448 >ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length = 402 Score = 76.6 bits (187), Expect = 3e-016, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 214 DEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLK 273 ++ K L + SGG +QR+ IA A+A +PD+++ DEPT+ALD + LI+QL+ Sbjct: 196 NDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLR 255 Query: 274 E--KYTIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFTRPKQKETNRYISG 327 + TII ++H+++ D G++VEQG ++IFT P T IS Sbjct: 256 DLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNPLHPYTWALISS 311 >ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 357 Score = 76.6 bits (187), Expect = 3e-016, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 10/232 (4%) Query: 87 NLNFWYNK--DKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGK 144 N++ + NK D Q++ + I+ NKIT + G+SG GK+T I+ L + Sbjct: 76 NISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLIKQLGLFEKPSFGYINCAN 135 Query: 145 IFFLGKNINSGIINDLTLRTRVGMVFQQLTP--FNFSIFENIAYGLRAHGIHNKQAIHEI 202 + I + + ++G + Q+ F SI E + G ++ K + Sbjct: 136 YCYFANQYQQKITKNF--KQKIGYILQKAEDQFFCDSILEEVLTG----AVNLKLCHKKD 189 Query: 203 VEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIAT 262 V A K L L +N LS GQ++RL +A +A+Q L++DEPT LD +A Sbjct: 190 VNYAKKYLDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFLILDEPTVGLDQMAI 249 Query: 263 NSIELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFT 314 +++ ++ +K+ I+IV+H + D+ I G+++ Q T F+ Sbjct: 250 SNLSKMLVAMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQTTVNDFFS 301 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 75.1 bits (183), Expect = 9e-016, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 65/110 (59%), Gaps = 2/110 (1%) Query: 222 RNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKEK--YTII 279 R + LSGG +QR+ +AR++ ++P++LL+DEP SALD+ +++ +QQ+ +K T I Sbjct: 343 RLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQKELQQIHKKSGLTFI 402 Query: 280 IVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFTRPKQKETNRYISGRN 329 +VTH + + ++D + G +++ G I+ PK + +I N Sbjct: 403 LVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIYDSPKTEWIANFIGQAN 452 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 73.6 bits (179), Expect = 2e-015, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 2/108 (1%) Query: 220 LHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKEKY--T 277 L + + +SGGQQQR+ IARAI +P +LLMDEP S LD+ I+Q +++ T Sbjct: 361 LTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQIT 420 Query: 278 IIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFTRPKQKETNRYI 325 + VTH + + I+D + + G+V + GT +++ +P + R++ Sbjct: 421 TVFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPANEFVARFL 468 >ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 623 Score = 72.0 bits (175), Expect = 7e-015, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 116/260 (44%), Gaps = 24/260 (9%) Query: 84 EIENLNFWYNKDKQVLF--DINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRW 141 E N++F F +++ K + K ++G +G GKS + L + NE Sbjct: 366 EFRNISFGLGNKNNNNFLQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNE---- 421 Query: 142 NGKIFFLGKNINSGIINDLTLRTRVGMVFQQLTPFNFSIFENIAYGLRAHG-------IH 194 G+I G+ I S I+ L L +G+VFQQ F +I NI G+ + Sbjct: 422 -GEILIGGEKIQS--IDSLYLSEMIGIVFQQNILFKGTISSNIKIGIETRSDWKNQSDLQ 478 Query: 195 NKQAIHEIVEQALKSTAL---WDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMD 251 +A+ + A T + D N+ + LSGGQ+QR+ IAR + +P +L+ D Sbjct: 479 KNEAMKNAAKIACADTFIEKFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFD 538 Query: 252 EPTSALDSIATNSIELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFANGRVV----EQG 307 + SALD++ + I+ K T I+ +I+ D+ + NGR+V +Q Sbjct: 539 DSMSALDALTEKKVRENIEN-DLKLTTKIIISQNINSIKHADKILVIDNGRIVGFDSDQK 597 Query: 308 TTKQIFTRPKQKETNRYISG 327 K K KE+ + + G Sbjct: 598 LMKNCSLYQKMKESQKDLGG 617 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 70.1 bits (170), Expect = 3e-014, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 20/208 (9%) Query: 102 INLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGKNINSGIINDLT 161 INLKI + ++GKSG GK++ + ++ L+ +G F G N LT Sbjct: 75 INLKILPGEFVVILGKSGSGKTSLLSLISALDR-----PTSGDSFVCGTNTICCSDAKLT 129 Query: 162 -LRTR-VGMVFQQLTPF-NFSIFENIAYGLRAHGIHNKQAIHEIVEQALKSTALWDEVKD 218 LR + VG +FQQ + + +NI L + + L+ E+K+ Sbjct: 130 ALRNKNVGYIFQQYGLLRDLDVDDNIKLAL---------PLKKRFNNNLEELLERLELKE 180 Query: 219 NLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALD-SIATNSIELLIQQLKEK-Y 276 + H+ + LSGGQQQR+ IARA+ +P +L DEPT A++ I+ ++ ++ ++K Sbjct: 181 HRHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGT 240 Query: 277 TIIIVTHSMAQTIRITDETIFFANGRVV 304 TI+IVTH+ + + + I +G+++ Sbjct: 241 TIVIVTHN-EKIVELAKRVIKIHDGKII 267 >ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length = 848 Score = 69.7 bits (169), Expect = 4e-014, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 7/128 (5%) Query: 203 VEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALD-SIA 261 V +AL S L +++ +R + SGGQ+QR+ IARA+ +P +++ DE SALD SI Sbjct: 664 VYEALDSVGL---KREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQ 720 Query: 262 TNSIELLIQQLKEKY--TIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFTRPKQK 319 I +L + L +K+ T++ + H ++ + + I G++VE+G+ +IF+ P Sbjct: 721 AQVINIL-KDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSNPVHP 779 Query: 320 ETNRYISG 327 T I Sbjct: 780 YTRSLIKA 787 >ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length = 564 Score = 65.1 bits (157), Expect = 1e-012, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 111/225 (49%), Gaps = 9/225 (4%) Query: 83 FEIENLNFWYNKDK-QVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRW 141 F++E+++ ++ K + D++L + N + ++G++G GKST L L + Sbjct: 6 FKMEHISKSFDNGKIKANVDVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPD----- 60 Query: 142 NGKIFFLGKNINSGIINDLTLRTRVGMVFQQLTPF-NFSIFENIAYGLRAHGIHNKQAIH 200 +GKIF K +N D ++ ++GMV Q N+++ +NI G + Sbjct: 61 SGKIFIGEKQVNFKSSKD-AVKHKIGMVHQHFKLIENYTVLDNIILGNESRFGFLPLINR 119 Query: 201 EIVEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSI 260 ++ E +K+ + +L + + L+ GQQQR+ I + + ++L+ DEPT+ L + Sbjct: 120 KVSEAKIKTIMEKYGIFVDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDL 179 Query: 261 ATNSIELLIQQLKE-KYTIIIVTHSMAQTIRITDETIFFANGRVV 304 + +I K+ TI++++H + + ++ D G+VV Sbjct: 180 EIQNFLKIIANFKKLGKTIVLISHKLNEIKQVADTATVLRLGKVV 224 >ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length = 253 Score = 60.5 bits (145), Expect = 2e-011, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 21/207 (10%) Query: 113 ALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGKNINSGIINDLTLRTRVGMVFQQ 172 A+IG +G GKST ++ L + G IFF K + S N ++G++ Q Sbjct: 16 AVIGHNGSGKSTLVKLLGGFLKAKK-----GTIFFNDKELTSVGFN------KIGILLQD 64 Query: 173 --LTPFNFSIFENIAYGLRAHGIHNKQAIHEIVEQALKSTALWDEVKDNLHRNANTLSGG 230 + ++ + + + L HG+ + + +I+ + L E+KD LS G Sbjct: 65 PDVQLLADTLHQELIFTLENHGVLASE-MDKIINEVLTVV----ELKDKQFTPLKKLSFG 119 Query: 231 QQQRLCIARAIALQPDVLLMDEPTSALDSIATNSI-ELLIQQLKEKYTIII-VTHSMAQT 288 ++QR A +A++P + L+DE S LD+ +N + + + +K++ I+I +TH Sbjct: 120 EKQRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIVINITHDF-ND 178 Query: 289 IRITDETIFFANGRVVEQGTTKQIFTR 315 + + DE IF + G ++++ + I+ + Sbjct: 179 LFLADEIIFLSKGSLIKKFAPEAIYEQ 205 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508349|ref|NP_110299.1| Psta /Pstc-like ABC transporter; phosphate specific [Mycoplasma pneumoniae M129] (651 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073084.1| phosphate ABC transporter, permease protein (ps... 847 0.0 >ref|NP_073084.1| phosphate ABC transporter, permease protein (pstA) [Mycoplasma genitalium G-37] Length = 654 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/642 (71%), Positives = 513/642 (79%), Gaps = 3/642 (0%) Query: 12 DNWLRYLSQTVAVCXXXXXXXXXXXXXXEAAKTGPDFTKSLLGLEFNLGAKKASIWFPLL 71 +N LR S+T+A EA K GPDF KSL LEFNLG K+A IWFPLL Sbjct: 12 ENLLRIFSKTLAFLFLVLFISFFVFLLTEATKIGPDFAKSLFNLEFNLGNKQAGIWFPLL 71 Query: 72 VSFVVSIGSLIIASYIGVRTSIFLVYRCKPRIRKKLLLVIDILSGIPSVIFGLFATQILS 131 VSF+VSIG+LIIASYIGVRTS FLVYRCKP+IRKKL L+IDILSGIPSVIFGLFA+QILS Sbjct: 72 VSFIVSIGALIIASYIGVRTSFFLVYRCKPKIRKKLSLIIDILSGIPSVIFGLFASQILS 131 Query: 132 SIFRDVLHLPPLSLLNVIVMLSFMIIPIVISLTTNALLHVESSLMTVAISLGENKTSVIY 191 FRD+L LPPLSLLNVI MLSFMIIPIVISLTTN L +V + L++V +SLGENKTS IY Sbjct: 132 IFFRDILKLPPLSLLNVIAMLSFMIIPIVISLTTNTLTYVNNDLISVVVSLGENKTSAIY 191 Query: 192 KVIKKEIKAQLVVILVLAFGRAISETMAVNFILQSVNYQEVIANDRFFTSDLKTLGSVIS 251 K+IKKEIK QL VIL LAF RAISETMAVNF+LQSVNYQEVI N+RFFTSDLKTLGSVIS Sbjct: 192 KIIKKEIKPQLTVILTLAFARAISETMAVNFVLQSVNYQEVINNNRFFTSDLKTLGSVIS 251 Query: 252 TFIFSENGDEQVSGVLYTFGIIIFVLISFLNFFAIWSTRPKTLERYPFLKKISNFIYQVV 311 TFIFSENGDEQ++GVLY FGIII +L+S LNFFAIWS PKTLERYPFLKKISNFIYQVV Sbjct: 252 TFIFSENGDEQINGVLYIFGIIILILVSLLNFFAIWSANPKTLERYPFLKKISNFIYQVV 311 Query: 312 WFIPNNIGALFTDLTARRQQVKKITAANVEQRATFFKERMQTNHLNKVYTSWKILQEIFC 371 WFIPNNI ALF DLT+ RQ VKKI N+ +R+ FFKER+Q+ K+ KI QE+ C Sbjct: 312 WFIPNNISALFVDLTSTRQSVKKIKVNNINERSLFFKERLQSVVWIKLNYFLKIFQELIC 371 Query: 372 AXXXXXXXXXXXXXXXXNGSQAIQRSGSTVFSFGVDTTGRALVNTLVIILVAIGITFPIA 431 NGS AI +GSTVFSF D+TGRALVNTLVIIL+ I ITFP+A Sbjct: 372 TFLAFGFVLAILLFVFINGSVAINNNGSTVFSFEADSTGRALVNTLVIILITITITFPLA 431 Query: 432 LLIAIWLNEYTKSRIAKNTFSFVIDSLSSMPSIIYGLFGLSFFLRTLQLSAGGANGTSLM 491 LLIAIWLNEY S++ KN F+FVIDSLSSMPSIIYGLFGLSFFLR LQLSAGGANGTSL+ Sbjct: 432 LLIAIWLNEYNNSKVVKNVFNFVIDSLSSMPSIIYGLFGLSFFLRVLQLSAGGANGTSLI 491 Query: 492 AGILTISVVVLPFLIRTCQEALNNVSWDLRVSAYALGVSKREVIWKIVLPXXXXXXXXXX 551 AGILTISVV+L FLIRTCQ+ALNNVSWDLR+SA+ALG+SKREVI+KIVLP Sbjct: 492 AGILTISVVILLFLIRTCQQALNNVSWDLRISAFALGISKREVIFKIVLPSALKGLIVAL 551 Query: 552 XXXXXXXXAETAPFFITAGLASSNLFDLSLPGQTLTTRIYGQLFSTNSTAVDVMLETALV 611 AETAPFFIT+GL+SSNLF LSLPGQTLTTRIYGQLFS NS A+ VMLET+LV Sbjct: 552 ILSINRIIAETAPFFITSGLSSSNLFHLSLPGQTLTTRIYGQLFSINSNAISVMLETSLV 611 Query: 612 SIVFLMFLIFLSSYLIPYLFSFNKQKWLQIKSKLQ---LWKK 650 S+VFL+ LIF SSYLIP LF NKQKWL IKSK Q LWK+ Sbjct: 612 SVVFLILLIFFSSYLIPSLFLLNKQKWLVIKSKFQSFKLWKR 653 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508350|ref|NP_110300.1| similar to phosphate binding protein Psts [Mycoplasma pneumoniae M129] (385 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073085.1| lipoprotein, putative [Mycoplasma genitalium G-37] 476 e-136 >ref|NP_073085.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 377 Score = 476 bits (1224), Expect = e-136, Method: Compositional matrix adjust. Identities = 237/363 (65%), Positives = 290/363 (79%), Gaps = 8/363 (2%) Query: 29 TAVIFSGCANINLISAVGSSSVQPLLSKLSSHYVLN-HNDKDNLVEISVQAGGSSAGVKA 87 +A SGCANINLISAVGSSSVQPLL+KLSS+YVLN +ND D LVEISVQAGGS+AG++A Sbjct: 17 SAFFLSGCANINLISAVGSSSVQPLLNKLSSYYVLNENNDNDKLVEISVQAGGSNAGIRA 76 Query: 88 ITKGLADIGNVSKNTKSYAEENKQLWMDKKLKTITLGKDAIAVIYKAPSEFKGKLVLTKD 147 I G ADIGNVSKN K YA+EN++ W DKKLKT+T+GKDAIAVIYKAP E KGKL+LTKD Sbjct: 77 IINGFADIGNVSKNPKEYAKENEKKWRDKKLKTLTIGKDAIAVIYKAPQELKGKLLLTKD 136 Query: 148 NLNDLYDLFAGSKSVDINKFVENGQTTKN----SNHNLIGFPRTGGAFASGTAEAFLKFS 203 N+NDLYDLFAG K+++I+KFV+ + TKN ++ L FPRTGG+FASGTAEAFL FS Sbjct: 137 NINDLYDLFAGVKTINIDKFVK--KDTKNMSNEKDYPLTSFPRTGGSFASGTAEAFLNFS 194 Query: 204 GLTQTKTLDKDSKEILEGQRNYGPNARPTSETNIEAFNTFVTTLRQPNLYGMVYLSLGFV 263 L KTLD +++IL+G NYGP A+PTSETNIEAFNTFVT L+ PNL+GM+YLSLGF+ Sbjct: 195 ALKSDKTLDSQTRDILKGIINYGPLAKPTSETNIEAFNTFVTNLQDPNLFGMIYLSLGFI 254 Query: 264 NNNMNLIKSEGFEVLKVKYDNNAVTPSSQAVSSNTYKWVRPLNSVVSLLPKQKTLPSIQR 323 NN+ IK+ GFE+L +KY+N V PS+Q VS N YKWVRPLNS+VSL + K + I+ Sbjct: 255 QNNLQAIKNNGFEILPIKYENKEVLPSNQTVSQNEYKWVRPLNSIVSLSEENKNIDEIKT 314 Query: 324 FFNWLLFSNNSE-IKKIYDDFGVLELTADEKKKMFKTGNAEMSNIANFWVDDYSLNNQTF 382 FFNWL F+ + IK IYD+FG+L+LT DEKKKMFKT ++ N+ NFWVDD++ +N F Sbjct: 315 FFNWLFFNGKKDVIKNIYDEFGILQLTEDEKKKMFKTNDSSPMNLENFWVDDFAFSNPIF 374 Query: 383 GAL 385 GA Sbjct: 375 GAF 377 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508351|ref|NP_110301.1| hypothetical protein MPN612 [Mycoplasma pneumoniae M129] (997 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073086.1| hypothetical protein MG414 [Mycoplasma genitali... 802 0.0 ref|NP_073087.1| hypothetical protein MG415 [Mycoplasma genitali... 113 7e-027 >ref|NP_073086.1| hypothetical protein MG414 [Mycoplasma genitalium G-37] Length = 1036 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1002 (44%), Positives = 645/1002 (64%), Gaps = 23/1002 (2%) Query: 1 MRSYHYLPLLGFVAFPTLLANASLDKNLVDSSLYISNSAHHNQGFTVGIKLKDSYFRKDF 60 MRSY ++PLL FP LANASL+KNLVD++LY+S + N+ +T G LK+ YFRK F Sbjct: 1 MRSYLFIPLLVSFLFPVALANASLEKNLVDTNLYLSPNTIQNRSYTAGFNLKNDYFRKSF 60 Query: 61 NFENPLIYKPNNKTTFGWNYSTLWTQLADGYYDRYNQLLREXXXXXXXXXXXXKDVNLGI 120 NF+N +I +PN F YS W++L + Y D Y Q++R+ K++ L I Sbjct: 61 NFDNEVIQRPNQNNYFAKTYSNEWSELVNKYSDNYKQIIRDNNFHWYNNIYYLKNIKLKI 120 Query: 121 ESSYTSSLAWNKTFSYPGVRNSFKSDIHDLQYFHFHNDSKSGFGP--SRINDPWYPQHDK 178 ESSY + A++ TF YPG+RNS+ SDIH Q F+FH+ + S F P N+ W + Sbjct: 121 ESSYIAH-AFSSTFRYPGIRNSWSSDIHSEQRFYFHSQAISNFFPRDGHTNEKWTEVPSR 179 Query: 179 YVTLSAGRTAEEAKNAGWSIPYNLETQRLFSPVWNRNKDFKWINVFFGFM-NRSLSVKSP 237 + ++ G + + N W P N L P +K +I F M +L + P Sbjct: 180 NIEIT-GTNPDGSWNKSWYKPDNPYFWDLTKP---SHKKAYFIEAKFVHMWGSTLRMIKP 235 Query: 238 NINDIVQNAKWIKQGKNGNYFIIFNA----YAITQNDGFFEDRPNNIFIAT-LWNNWWLE 292 D+++N KW+++G NGNY I FNA Y ++ GFF D NNIF+A W W L Sbjct: 236 TPEDVIRNIKWLRKGNNGNYVIDFNAPMWYYLGQESRGFFADWKNNIFVAPDFW--WGLA 293 Query: 293 STPIYIYRVFWEVELIKTPRVFEQDNVQWNEPVLPKETWVFSID-NKQANAYWSSSNGFK 351 TPI YR +W++EL+K P VFEQ+N QWNEP + +W FSI+ NKQ +A+W S N FK Sbjct: 294 MTPIRAYRFWWDLELVKVPPVFEQNNAQWNEPFPGRSSWFFSINSNKQVDAHWMSINEFK 353 Query: 352 DKVIKDRKIMEAFTRNRQVTQSILNMGKNVVVKPLTDDEEQSLFSNKWDIFKYTPIIPVN 411 +K+ KDRKI+EAFT NR++TQ+IL +G +VV+P T+D + F++KWDIFK+TPI+P Sbjct: 354 EKMKKDRKIIEAFTNNREITQTILRLGNGLVVRPETEDSRREAFNSKWDIFKHTPILPEQ 413 Query: 412 -AQRFGVDFYVEQHNADLKPPIXXXXXXXXXXXXXXFDPNSVVDTLSKTFNEKDLSQKDQ 470 + FY+ Q+N D PI FD NS+V KT N++ + K + Sbjct: 414 EVVHHQISFYLRQNNPDEVLPISFSNLSKLWISQLEFDINSLVSQTEKTLNKETIGTKIK 473 Query: 471 LQIMFKKEFTQAIAQISKLNEEIDLATDKATALQKFDSLKSKDSNVNFASLQYLYDLLGM 530 I FK +F AI ++S +N+ ID + DK AL+ F+ + SN + +L YLY+LL M Sbjct: 474 PTIKFKDKFINAIKEVSLINQRIDESIDKNEALKSFNISTNNQSNF-YPNLDYLYNLLQM 532 Query: 531 EPTNKEHLIFIRNLPEMLQTIFARAKLLAKVKIGDTLQEITLLKNNVNVFDIKTWEKYLT 590 P NKE L FIRNLP M++TIF R+ L KVKIG+++ EITLL+NN N FD+ + E++LT Sbjct: 533 SPNNKEELFFIRNLPRMVKTIFDRSTLTVKVKIGNSVNEITLLRNNKNYFDLSSIEEFLT 592 Query: 591 PQQHASNEYTINFLSLDFIVDGYESENLHFQVVDQLFGAVKNLPTINKIPEGYQYKFKYR 650 +Q A NE I FL+L+F VDGYESEN+ V+ LF ++K L TI + +G++YKFKYR Sbjct: 593 EKQKADNEMNIEFLALNFFVDGYESENISNYSVEPLFDSIKKLSTIKRTKDGFEYKFKYR 652 Query: 651 SNFSNQQFKEKDFSVPLHKAIKSFSVGELKQRMEKLNDFEKQQIVFVIKNSFAGVDKTV- 709 +F+ Q++ KDF +PL+K +++F+V ELK+R EK ND+EK+Q+ F+IKNSF DK + Sbjct: 653 KDFNEQRWIAKDFRIPLNKNVQNFNVAELKKRNEKFNDYEKRQMAFIIKNSFKSKDKNID 712 Query: 710 LDVDANSLTFVEDPRQYKLDLGNMNENKGFFYVLADIHNSNELFKLGSTIDPEIIKGQIY 769 LD+++NSLTFV++P++Y L NE KG FYVLA+I+NSNELFK GS D EIIK ++Y Sbjct: 713 LDINSNSLTFVDNPKKYFKHLEPTNEKKGIFYVLAEINNSNELFKYGSESDSEIIKDKMY 772 Query: 770 FVKQNQIKPNTRTYLFKINTRKLLLDKQKLWFKPHLETQTVSFMFDEFEIGKLDIETSNI 829 F+ QNQ P RTYLFK +T KL +DK L FK LE V D +I +LD+++S+ Sbjct: 773 FLSQNQKNPKLRTYLFKFHTNKLFVDKNDLGFK--LEKDKVFLSVDNLKIAELDLKSSSF 830 Query: 830 QLIDDYEFEFQSDFSLQDEQVLLEKLNIVLSQMNLHVETKNARLNPVNKMAYLTVLKNNQ 889 + ++DY+ +F FSL DEQ+L++KLNI LS+ L TKN R N NK + +++N Sbjct: 831 KFLEDYQLDFHEPFSLNDEQLLVDKLNITLSEKRLQT-TKNVRFNLKNKFINIHLVENKN 889 Query: 890 KFNLEFHVDRYTSQLSIQAMLGSQRLFAINYDLKLSQNKQMLYLINKDGLEKSVWFNIKN 949 +FNL F VD + +L I+ + ++F+I+YDLK++ N Q L +++ +G + S+WF+I + Sbjct: 890 QFNLVFDVDVRSKKLFIKGVNNDNQVFSISYDLKITNN-QTLLIVDANGFDNSIWFDITS 948 Query: 950 DSQTKLAQQLARFLKENNFQFRQKPVFDFHTQNKAFALEKLD 991 ++QT+L + L+ +LK+NN QF++ P F+ +Q+K++ ++KL+ Sbjct: 949 ENQTQLFKALSFYLKQNNLQFKRVPDFNLKSQDKSYEVDKLE 990 >ref|NP_073087.1| hypothetical protein MG415 [Mycoplasma genitalium G-37] Length = 272 Score = 113 bits (283), Expect = 7e-027, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 126/230 (54%), Gaps = 2/230 (0%) Query: 768 IYFVKQNQIKPNTRTYLFKINTRKLLLDKQKLWFKPHLETQTVSFMFDEFEIGKLDIETS 827 +YF++QN+ P RTYLF++ T+KL+L+ +WFK + V + + EI + + + + Sbjct: 1 MYFLEQNKNFPAIRTYLFQMRTKKLVLNVNDIWFKSSGDKLRV--IVNNVEIDEFNPKEN 58 Query: 828 NIQLIDDYEFEFQSDFSLQDEQVLLEKLNIVLSQMNLHVETKNARLNPVNKMAYLTVLKN 887 N + YE FSL ++++L++KLN+ LS+MNL ++ K + L+ K LT LK Sbjct: 59 NTSFFESYEVHINDYFSLANKELLIKKLNLALSEMNLLIDKKKSSLDLFPKEIKLTTLKI 118 Query: 888 NQKFNLEFHVDRYTSQLSIQAMLGSQRLFAINYDLKLSQNKQMLYLINKDGLEKSVWFNI 947 N + +VD +QL+I+ + RL ++ YD+ + ++ + L K +WF++ Sbjct: 119 NSSLHFYLNVDAIKNQLNIEVNISKNRLTSLVYDIAIKNENELQIRTTNNYLNKYIWFDL 178 Query: 948 KNDSQTKLAQQLARFLKENNFQFRQKPVFDFHTQNKAFALEKLDNKDDTD 997 + KL +L FL FQF+++P F + +F ++K+ + D Sbjct: 179 DKKNNQKLKNELKLFLSLKKFQFKKEPNFSLKKNSYSFQIDKIIQSNSED 228 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508352|ref|NP_110302.1| hypothetical protein MPN613 [Mycoplasma pneumoniae M129] (344 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073087.1| hypothetical protein MG415 [Mycoplasma genitali... 209 4e-056 ref|NP_073086.1| hypothetical protein MG414 [Mycoplasma genitali... 140 1e-035 >ref|NP_073087.1| hypothetical protein MG415 [Mycoplasma genitalium G-37] Length = 272 Score = 209 bits (531), Expect = 4e-056, Method: Compositional matrix adjust. Identities = 113/270 (41%), Positives = 173/270 (64%), Gaps = 2/270 (0%) Query: 69 MYFLKKETKIPTIRTYLFQMRTHKIALNANDVWFQANNDKVKVIVDGIELDQFDPKLPNV 128 MYFL++ P IRTYLFQMRT K+ LN ND+WF+++ DK++VIV+ +E+D+F+PK N Sbjct: 1 MYFLEQNKNFPAIRTYLFQMRTKKLVLNVNDIWFKSSGDKLRVIVNNVEIDEFNPKENNT 60 Query: 129 AFFNDYQVDLVSTLTLADKQLLIRRLNLALVGMNLMVDEQATNIETFPKQIRLTTKSIDQ 188 +FF Y+V + +LA+K+LLI++LNLAL MNL++D++ ++++ FPK+I+LTT I+ Sbjct: 61 SFFESYEVHINDYFSLANKELLIKKLNLALSEMNLLIDKKKSSLDLFPKEIKLTTLKINS 120 Query: 189 SFDFDVEFNPKASELNVIVKVDEQPLFKLDYELVIKNSNTLQLVNRNKHLGMYIWSVADQ 248 S F + + ++LN+ V + + L L Y++ IKN N LQ+ N +L YIW D+ Sbjct: 121 SLHFYLNVDAIKNQLNIEVNISKNRLTSLVYDIAIKNENELQIRTTNNYLNKYIWFDLDK 180 Query: 249 RYQAKLLDTLQLFLQSKQMYLKEKIPLKLQDNTATFKIAKQAQPNNGENKNTNFIGYLVI 308 + KL + L+LFL K+ K++ L+ N+ +F+I K Q N E+K T+ I YL+I Sbjct: 181 KNNQKLKNELKLFLSLKKFQFKKEPNFSLKKNSYSFQIDKIIQS-NSEDKKTDIIVYLII 239 Query: 309 AASSLFLVVVAFSFYFYKRKKNLKSHKQKA 338 S L L + F YF+K K K K K Sbjct: 240 GFSVLVLFITVF-IYFHKWNKKQKMIKNKT 268 >ref|NP_073086.1| hypothetical protein MG414 [Mycoplasma genitalium G-37] Length = 1036 Score = 140 bits (354), Expect = 1e-035, Method: Compositional matrix adjust. Identities = 100/316 (31%), Positives = 165/316 (52%), Gaps = 15/316 (4%) Query: 11 LTVALNSIKLVKNPEELIPGLIPTNPKTGIFYIAAEITNSNNFFKWGTDSNREIIKGQMY 70 L + NS+ V NP++ L PTN K GIFY+ AEI NSN FK+G++S+ EIIK +MY Sbjct: 713 LDINSNSLTFVDNPKKYFKHLEPTNEKKGIFYVLAEINNSNELFKYGSESDSEIIKDKMY 772 Query: 71 FLKKETKIPTIRTYLFQMRTHKIALNANDVWFQANNDKVKVIVDGIELDQFDPKLPNVAF 130 FL + K P +RTYLF+ T+K+ ++ ND+ F+ DKV + VD +++ + D K + F Sbjct: 773 FLSQNQKNPKLRTYLFKFHTNKLFVDKNDLGFKLEKDKVFLSVDNLKIAELDLKSSSFKF 832 Query: 131 FNDYQVDLVSTLTLADKQLLIRRLNLALVGMNLMVDEQAT-NIETFPKQIRLTTKSIDQS 189 DYQ+D +L D+QLL+ +LN+ L L + N++ I L + Sbjct: 833 LEDYQLDFHEPFSLNDEQLLVDKLNITLSEKRLQTTKNVRFNLKNKFINIHLVENKNQFN 892 Query: 190 FDFDVEFNPKASELNVIVKVDEQPLFKLDYELVIKNSNTLQLVNRNKHLGMYIWSVADQR 249 FDV+ ++ +L + ++ +F + Y+L I N+ TL +V+ N IW Sbjct: 893 LVFDVDV--RSKKLFIKGVNNDNQVFSISYDLKITNNQTLLIVDANG-FDNSIWFDITSE 949 Query: 250 YQAKLLDTLQLFLQSKQMYLKEKIPLKLQDNTATFKIAKQAQPNNGENKNTN-------- 301 Q +L L +L+ + K L+ ++++ K + N + ++TN Sbjct: 950 NQTQLFKALSFYLKQNNLQFKRVPDFNLKSQDKSYEVDK-LEKNEIKKQDTNVELILWVI 1008 Query: 302 --FIGYLVIAASSLFL 315 I L+I+++ LFL Sbjct: 1009 FGIIISLMISSAVLFL 1024 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508353|ref|NP_110303.1| hypothetical protein MPN614 [Mycoplasma pneumoniae M129] (334 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073086.1| hypothetical protein MG414 [Mycoplasma genitali... 187 1e-049 >ref|NP_073086.1| hypothetical protein MG414 [Mycoplasma genitalium G-37] Length = 1036 Score = 187 bits (475), Expect = 1e-049, Method: Compositional matrix adjust. Identities = 111/310 (35%), Positives = 183/310 (59%), Gaps = 14/310 (4%) Query: 12 FSLTPLLLSSATINSHVIDSSFYLTKNLVESENQSPIQFNQLSRIILVQLEFDPDSIVDN 71 F TP+L ++ + SFYL +N + PI F+ LS++ + QLEFD +S+V Sbjct: 404 FKHTPILPEQEVVHHQI---SFYLRQN--NPDEVLPISFSNLSKLWISQLEFDINSLVSQ 458 Query: 72 TSITFNNRTLGQKALLKLRFKREFTLAIQEITELNQLVDQAIDKNTVLQNFLTLKNVERK 131 T T N T+G K ++FK +F AI+E++ +NQ +D++IDKN L++F N+ Sbjct: 459 TEKTLNKETIGTKIKPTIKFKDKFINAIKEVSLINQRIDESIDKNEALKSF----NISTN 514 Query: 132 QQ---WERLSYLYKLLNFDFRDPQELSLVRDLPRLLKTIFESASINFQVRMGGQLRKITL 188 Q + L YLY LL + +EL +R+LPR++KTIF+ +++ +V++G + +ITL Sbjct: 515 NQSNFYPNLDYLYNLLQMSPNNKEELFFIRNLPRMVKTIFDRSTLTVKVKIGNSVNEITL 574 Query: 189 VKNNNNVFNLGQFEQFLNLDQISINLFEVEFLSFDFISDQYPSWTAKNLPVFSLFESAKN 248 ++NN N F+L E+FL Q + N +EFL+ +F D Y S N V LF+S K Sbjct: 575 LRNNKNYFDLSSIEEFLTEKQKADNEMNIEFLALNFFVDGYESENISNYSVEPLFDSIKK 634 Query: 249 KPTIQKTNQGIQYRLRFRSNYNEQYLNKYRFSIPVVNNGKEFSVLDIQ--DKELTEEQKN 306 TI++T G +Y+ ++R ++NEQ F IP+ N + F+V +++ +++ + +K Sbjct: 635 LSTIKRTKDGFEYKFKYRKDFNEQRWIAKDFRIPLNKNVQNFNVAELKKRNEKFNDYEKR 694 Query: 307 QIAFVIKNGF 316 Q+AF+IKN F Sbjct: 695 QMAFIIKNSF 704 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508354|ref|NP_110304.1| hypothetical protein MPN615 [Mycoplasma pneumoniae M129] (249 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508355|ref|NP_110305.1| ribosomal protein S9 [Mycoplasma pneumoniae M129] (132 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073088.1| ribosomal protein S9 (rpS9) [Mycoplasma genital... 207 3e-056 >ref|NP_073088.1| ribosomal protein S9 (rpS9) [Mycoplasma genitalium G-37] Length = 132 Score = 207 bits (527), Expect = 3e-056, Method: Compositional matrix adjust. Identities = 103/132 (78%), Positives = 116/132 (87%) Query: 1 MEKQSYYGLGRRKSSSAKVYLTPTQDKGKITVNRRDPSEYFPNKLVIQDMEQPLDLTDLK 60 M+K+S+YGLGRRKSS+AKVYL ++DKGKIT+N R+PS+YFPNKLVIQDMEQPL+LT LK Sbjct: 1 MDKKSFYGLGRRKSSTAKVYLYQSKDKGKITINHRNPSDYFPNKLVIQDMEQPLELTKLK 60 Query: 61 KNFDINVVVKGGGFTGQAGAIRLGIVRALLQFNPEXXXXXXXXXXTTRDKRVKERKKFGL 120 NFDINVVVKGGGFTGQAGAIRLGIVRAL++FNP+ TTRDKR KERKKFGL Sbjct: 61 DNFDINVVVKGGGFTGQAGAIRLGIVRALIKFNPDLKKLLKTKKLTTRDKRAKERKKFGL 120 Query: 121 YGARRAPQFTKR 132 YGARRAPQFTKR Sbjct: 121 YGARRAPQFTKR 132 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508356|ref|NP_110306.1| ribosomal protein L13 [Mycoplasma pneumoniae M129] (146 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073089.1| ribosomal protein L13 (rpL13) [Mycoplasma genit... 267 4e-074 >ref|NP_073089.1| ribosomal protein L13 (rpL13) [Mycoplasma genitalium G-37] Length = 146 Score = 267 bits (682), Expect = 4e-074, Method: Compositional matrix adjust. Identities = 126/146 (86%), Positives = 137/146 (93%) Query: 1 MQKTSMLTKEQANKRRQWYIVDAAGLVLGKLAVKAADLIRGKNKVDFTPNQDCGDYLIII 60 MQKTSMLTKE+A K R+WY+VDA+GLVLGKLAVKAA+LIRGKNK +FTPNQDCGD+LIII Sbjct: 1 MQKTSMLTKEEAIKNRKWYLVDASGLVLGKLAVKAANLIRGKNKANFTPNQDCGDHLIII 60 Query: 61 NSDQVVLTGNKKENEFWYHHSQYIGGIKKVSGRDMLKKQSDKLVYNAVKGMLPDNRLSRR 120 NSDQVVLTGNKK+NEFWYHHSQY+GGIKK SGRDM+ K SDKLV+NAVKGMLPDNRLSRR Sbjct: 61 NSDQVVLTGNKKDNEFWYHHSQYMGGIKKTSGRDMINKNSDKLVFNAVKGMLPDNRLSRR 120 Query: 121 WITKVHVFKGDKHNMEAQKPTTLNWS 146 ITKVHVFK DKHNMEAQKPT LNWS Sbjct: 121 LITKVHVFKNDKHNMEAQKPTLLNWS 146 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508357|ref|NP_110307.1| gamma-like [Mycoplasma pneumoniae M129] (681 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073091.1| DNA polymerase III, subunit gamma and tau [Myco... 360 e-101 ref|NP_073090.1| DNA polymerase III, subunit gamma and tau [Myco... 123 7e-030 >ref|NP_073091.1| DNA polymerase III, subunit gamma and tau [Mycoplasma genitalium G-37] Length = 260 Score = 360 bits (923), Expect = e-101, Method: Compositional matrix adjust. Identities = 171/224 (76%), Positives = 199/224 (88%), Gaps = 1/224 (0%) Query: 1 MRKVLYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKA 60 M +V YQKYRP F T+GQ+SI++I+VNAI +D+LP+GYIF+GERGTGKTTFAKIIAKA Sbjct: 1 MHQVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKA 60 Query: 61 INCLNWNG-DVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKK 119 INCLNW+ DVCN C+ C++IN+NSAID+ EIDAASKNGINDIREL ENVFN PF FKKK Sbjct: 61 INCLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKK 120 Query: 120 VYILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITND 179 VYILDEAHMLT QSW GLLKTLEE+P YVLFIF TTEFNKIP+TILSRCQSFFFK+IT+D Sbjct: 121 VYILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSD 180 Query: 180 LIQQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQIS 223 LI +RL ++A KE IKI DAL+K+ADL+QGSLRDGLSLLDQ++ Sbjct: 181 LILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQLA 224 >ref|NP_073090.1| DNA polymerase III, subunit gamma and tau [Mycoplasma genitalium G-37] Length = 331 Score = 123 bits (308), Expect = 7e-030, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 101/179 (56%) Query: 503 NNPVSIPIKLNRAVIAVSVYGHNDPKLVAHFQQLLDSFKREFTQAEKTKDSSYLKQFSDK 562 NN KLN A IA+++ ND K + HFQ LL F+ +F +K + SY F DK Sbjct: 153 NNKFLDTSKLNLANIALAINAFNDNKWINHFQNLLSVFQTKFNDKDKQNNLSYFNNFIDK 212 Query: 563 FTASDLSKVIKVLAASPFGLVLIFEDKEIATRLWKXXXXXXXXXXXXXXIFQQNLFLSSF 622 ++A D+ K K++ AS FG+V++FED++IA RLWK IF QNLFL+SF Sbjct: 213 YSARDIVKATKIVKASSFGIVILFEDQKIAMRLWKEAIEEGNVQATIFQIFNQNLFLASF 272 Query: 623 TLSEYETKVLAKVEQLTHKPXXXXXXXXXXXSSTVVKKAQKTAAQEIADTFFKGLYEEK 681 + +Y+T + + + ++ + +K+ +++ +Q++ D +FKGL+EEK Sbjct: 273 SEHQYKTTITEETKNQKYQTEVLNLTQLENLAKPFLKEKKRSLSQKMVDKYFKGLFEEK 331 Score = 110 bits (275), Expect = 5e-026, Method: Compositional matrix adjust. Identities = 49/95 (51%), Positives = 69/95 (72%) Query: 266 LIDNFESQGINFVHFLRELFALTVDLYGYVKTGQIAVVKPSDQTMAAKLRFHPKQYALLV 325 ++D+FES G+NF +FLRELFALTV+LY Y K I V+ +++TM L F + YA L+ Sbjct: 1 MLDDFESNGLNFTYFLRELFALTVNLYAYAKLKNINVLDSTEKTMIETLNFEKQHYAFLI 60 Query: 326 QAIEANTGYGPSQLSLSDQIKAIVIHYNNAVSKEP 360 +AIE NT +G SQL+L D++KAIVI YN +++P Sbjct: 61 KAIEENTNFGLSQLTLIDRLKAIVISYNEFFNQKP 95 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508358|ref|NP_110308.1| excinuclease ABC subunit A [Mycoplasma pneumoniae M129] (948 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073092.1| excinuclease ABC subunit A (uvrA) [Mycoplasma g... 1704 0.0 >ref|NP_073092.1| excinuclease ABC subunit A (uvrA) [Mycoplasma genitalium G-37] Length = 954 Score = 1704 bits (4413), Expect = 0.0, Method: Compositional matrix adjust. Identities = 807/948 (85%), Positives = 896/948 (94%) Query: 1 MKPELKTNDFIRVKGARENNLKNVNIDIPKNQFVVITGLSGSGKSSLAFNTIYAEGRRRY 60 +KPE K NDFIRVKGARENNLKN+NIDIPKNQFVVITGLSGSGKSSLAFNTIYAEGRRRY Sbjct: 3 LKPEWKNNDFIRVKGARENNLKNINIDIPKNQFVVITGLSGSGKSSLAFNTIYAEGRRRY 62 Query: 61 LESLSSYARQFLGNSDKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLWA 120 LESLSSYARQFLGNSDKPDVD IEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLWA Sbjct: 63 LESLSSYARQFLGNSDKPDVDLIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLWA 122 Query: 121 RIGIPFCPNGHGAIQTQTVNQIANQIFNLPVKSRIQILAPTIKNQRGTFANEFAKYQQLG 180 RIG P+CPNGHG+IQTQT+NQIANQIF+LP KS++Q+LAPT+KNQRG F NEF KY+QLG Sbjct: 123 RIGTPYCPNGHGSIQTQTINQIANQIFDLPNKSKVQLLAPTVKNQRGIFTNEFIKYKQLG 182 Query: 181 FLRVWVDGQVYTLDEEIKLDKNTKHNLSVVVDRIVINQDKQTLGRIVDAIEGVIKLTEGR 240 FLRV VDGQ+YTLD+EIKLDKNTKHN+SVV+DRI+IN+D QT RIVD+IE + +LT G+ Sbjct: 183 FLRVLVDGQIYTLDDEIKLDKNTKHNISVVIDRIIINKDNQTYSRIVDSIETIDRLTNGK 242 Query: 241 IEVLLEDGKILSFNKNHGCDQCGFSISELEPRLFSFNSPLGSCEYCKGLGFSYEPDVEKI 300 IEVL EDG IL+F+KNHGCD+CGFSISELEPRLFSFNSPLGSC YCKGLGFSYEPDV+KI Sbjct: 243 IEVLKEDGTILNFSKNHGCDKCGFSISELEPRLFSFNSPLGSCSYCKGLGFSYEPDVDKI 302 Query: 301 IPNPLLSINEGGIDIFKNIVHGTSLDWQRFLSLINHYQIPLDQPLGQMDTDLVRMILEGS 360 I + LSIN+G IDIFKNIVHGTSLDWQRFLSL+NHY+IPLD+P+ Q+D + +ILEGS Sbjct: 303 IADSKLSINQGAIDIFKNIVHGTSLDWQRFLSLVNHYKIPLDKPIEQLDKSQLNLILEGS 362 Query: 361 DEPIEIKTVSNSGAKNVRFEHYEGVAHLIKRRHLETSSQASREWYSAYMSEITCKKCQGK 420 DEPIEIKT+SNSGAKN+RFEHYEG+A+LIKRRHLET+SQ SREWYSAYMSEITCKKC GK Sbjct: 363 DEPIEIKTISNSGAKNIRFEHYEGIANLIKRRHLETNSQVSREWYSAYMSEITCKKCHGK 422 Query: 421 KLTTNSLSVKLGGLDIISFTELSIDKAIEFLLQIELNQEQKKIGELALKEIINRLSFLKN 480 KL ++LSVKLGG+DIISFTELSIDK+I+FLL++ELN EQKKIGELALKEIINRLSFLKN Sbjct: 423 KLIKDALSVKLGGIDIISFTELSIDKSIDFLLKLELNDEQKKIGELALKEIINRLSFLKN 482 Query: 481 VGLEYLNLARRASTLSGGEAQRIRLATQIGSQLTGVLYVLDEPSIGLHQKDNDRLINTMM 540 VGL+YLNLARRASTLSGGEAQRIRLATQIGSQLTGVLYV+DEPSIGLHQKDN RLI TMM Sbjct: 483 VGLDYLNLARRASTLSGGEAQRIRLATQIGSQLTGVLYVMDEPSIGLHQKDNMRLIKTMM 542 Query: 541 VMRDLGNTLLVVEHDSETMLAADYLIDIGPKAGNQGGEVVAAGTPLEVMENPDSLTGQYL 600 VMRDLGNTLLVVEHDSETMLAADYLIDIGPKAGN+GGE+VA GTPL+VMEN +S+TGQYL Sbjct: 543 VMRDLGNTLLVVEHDSETMLAADYLIDIGPKAGNEGGELVACGTPLQVMENSNSITGQYL 602 Query: 601 SGKKQIEVPKTRHAGNGRTLTLKGAKGNNLKNINVTIPLNKLVLVTGVSGSGKSTLINQT 660 SGKKQI +PK RH+GNG+T+ +KGAK NNLKNINVTIPLNKLVL+TGVSGSGKS+LINQT Sbjct: 603 SGKKQISIPKNRHSGNGKTIIIKGAKVNNLKNINVTIPLNKLVLITGVSGSGKSSLINQT 662 Query: 661 LVPILERLVNYKNVKPAPYKEIIGVNHIDKVVVVSQDPIGRTPRSNPATYVSVFDDIREL 720 LVP LER++ K VK YKEIIG N+IDK++VVSQDPIGRTPRSNPATY+SVFDDIR+L Sbjct: 663 LVPALERILYRKGVKKDTYKEIIGANNIDKIIVVSQDPIGRTPRSNPATYISVFDDIRDL 722 Query: 721 FANTKEAKARGYTNSRFSFNVAGGRCDKCFGDGVIRIEMHFLPDVYVTCEMCDGKKYNPQ 780 FANTKEAKARGYTNSRFSFNV GGRCDKCFGDGVIRIEMHFLPDVYV CE+C+GKKYN Q Sbjct: 723 FANTKEAKARGYTNSRFSFNVPGGRCDKCFGDGVIRIEMHFLPDVYVKCEVCNGKKYNSQ 782 Query: 781 TLEVKYLGKSIFDVLQMSCQEAYDFFKAIPNIARKLKLLCDVGLEYLQLGLNVTFLSGGE 840 TLE+KYLGKSIFDVLQMSC+EAY+FFKAIPNI+RKL+LLCDVGLEYLQLG+NVTFLSGGE Sbjct: 783 TLEIKYLGKSIFDVLQMSCKEAYEFFKAIPNISRKLRLLCDVGLEYLQLGINVTFLSGGE 842 Query: 841 AQRIKLAKFLQKKATGKTLYVLDEPSTGLHIEDINKLLTVIQRIIKNGDSVIIIEHNLDI 900 AQRIKL+KFLQKK+TGKTL+VLDEPSTGLH+EDINKLLT+IQRIIKNGD+V++IEHNLDI Sbjct: 843 AQRIKLSKFLQKKSTGKTLFVLDEPSTGLHLEDINKLLTIIQRIIKNGDTVVVIEHNLDI 902 Query: 901 IKMADYIIDLGPEGGEKGGQIIAQGTPEQLLNQVDKSYTAQYLAKILK 948 IK+ADYIIDLGPEGG+ GGQI+AQGTPEQL+NQV+KSYTAQYL+KILK Sbjct: 903 IKVADYIIDLGPEGGDNGGQIVAQGTPEQLINQVNKSYTAQYLSKILK 950 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508359|ref|NP_110309.1| hypothetical protein MPN620 [Mycoplasma pneumoniae M129] (839 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073093.1| hypothetical protein MG422 [Mycoplasma genitali... 731 0.0 >ref|NP_073093.1| hypothetical protein MG422 [Mycoplasma genitalium G-37] Length = 835 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/838 (47%), Positives = 558/838 (66%), Gaps = 4/838 (0%) Query: 1 MLKQISTTTKKEPWVNLSLLMVHNSFLDINYFWTTNLSIHKYGNYLVNNLNKAQWNTLSS 60 MLK+IS E WV+LSLLM+ SFLD NYF LS+ KYGNYL++NLN+AQW TLS Sbjct: 1 MLKKISLFDNLEQWVDLSLLMIRTSFLDANYFGVAKLSLFKYGNYLIDNLNQAQWKTLSQ 60 Query: 61 VLQLKKAPHSGFLWTDQHNYIPLHRVKTNLCEKIELAAVQQSHPFHQTIHDFLRQSTCPK 120 VLQL K P+SGFL + H Y+PL ++K NLCE+I+L + F + FL+Q K Sbjct: 61 VLQLNKQPYSGFLLVNNHQYLPLQKIKFNLCEEIDLRN-KNKWLFPNSFSIFLKQDLSYK 119 Query: 121 KRQRLIEKLQIPNELRWFLGFNALKKLSQFVVFELDNTNKLTSETLSQFFTTKFVNKVYF 180 K Q + IP +L+WFLGFNAL L +F + +++N N+ TS+ ++QFFT+KF+N +YF Sbjct: 120 KDQNYFNLVNIPKQLKWFLGFNALNDLFRFSILKIENVNQKTSKVINQFFTSKFINSIYF 179 Query: 181 NQIQFEYNNFVGLLEDHERDLVEFSTHFFNSFFEQPDHLTKSFFEQYYALTRQRERLLHN 240 Q+ FEYNNF+ L+E +ER+LV+F+ FFN F + + KSFFE+YYAL Q+ L + Sbjct: 180 EQVDFEYNNFLTLIEKNERELVDFNCMFFNQLFTFNNKVIKSFFERYYALNEQKNNLKNK 239 Query: 241 LKVQSYETKHGVNTYFENLQITRAQQQANQLKRAFKKQQRNSVQLINRFMSSLWWSQTKI 300 LK+ +YE K N+YFE LQI RA+Q+ K+ F KQ +N++QLIN F SL +S KI Sbjct: 240 LKIAAYEAKSRDNSYFEKLQIERAKQRLFDAKKTFSKQHKNALQLINSFTFSLIFSGWKI 299 Query: 301 KFKSIFNFYKTRILEKRIVAKRIQIKIWLLKELKQMRLLNPDLLVSTIAESERLVEQLMS 360 K++S FNFY+ RILEK+IV+KRI+ +I LLKE+K+M LL+P LLV TI ES LV ++ + Sbjct: 300 KWRSFFNFYRKRILEKKIVSKRIKTRILLLKEIKKMDLLSPKLLVETIDESINLVNKIFA 359 Query: 361 NIQRLYQQILQLKPGQSLNWKYQAISFELEKLTKPIVLTHDAVIGFLIKSRLAFLQEYAK 420 NIQ LYQ+I+ LK G +LNWKYQ I+ EL+ ++ +LT V FLIK+RL+F++ + K Sbjct: 360 NIQNLYQEIISLKSGPNLNWKYQTINQELKIMSARFILTKKEVHEFLIKARLSFIKNFVK 419 Query: 421 GLNRCEQHNKLVNELKQNVLLNQNQYKGEVSQSYSVVNQKAVFKGFIQTVKAALNYTKLK 480 N H KLVNELK+N+LLNQN Y+G+ + S+SV+ QK VFK FI TV+ A+ ++ Sbjct: 420 QSNNLYVHEKLVNELKENILLNQNHYRGKHNNSFSVLIQKTVFKQFIDTVQYAIGLISMR 479 Query: 481 HTLDPFNLMNIVQERCFEQLLTTYEKLDWTKYELNQLYFVCRALWTNLHKQTQHFFTKYQ 540 +L+ FN +++ +E LL Y+K++W KYELN LYFV +LW +L K+ Q FF KY+ Sbjct: 480 KSLETFNFAFQIKQYFYESLLANYQKINWQKYELNNLYFVLISLWNSLSKKFQQFFNKYE 539 Query: 541 FITHGVVDFVFNQGRNQTQFASLKANLNRDWNSPKWKLLVNKTVNKYFEANLHHPQAYLL 600 F++ G DF++N+GR++ F+ LK L D NSPKW LV+K +NKY + N P ++LL Sbjct: 540 FLSCGSNDFIWNEGRSEPHFSLLKDKLKNDLNSPKWNFLVDKVINKYLDLNFETPVSFLL 599 Query: 601 LPXXXXXXXXXXXXXXXXQLNLKTQLKQWRAHYHLLLQDIRLIQWLYXXXXXXXXXXXXA 660 +LK +LK+ + Y LLL+DI L++W++ Sbjct: 600 ASRGFSSTTDTTNKETKN--DLKQKLKKCKQKYKLLLKDINLVKWIFRDETNQKLQKIKF 657 Query: 661 LLKNYGTLNKLLNTQISKVNNVVRKTFFVDSEECDLNRLQASNKLHFNLLNAMVNVISFC 720 ++K Y LNK L+ ++ K N +++TFF+DSEEC++NRL+ASNKL+ N+LN+ + I+F Sbjct: 658 IMKRYCILNKTLHLRLKKTNKKIKRTFFIDSEECNINRLEASNKLYLNVLNSQLKTINFF 717 Query: 721 LKKCRQNPKKLNRTANLKMLLDNTFKNGIPSWMIFSDLNKINTKQRFKXXXXXXXXXXXX 780 L + ++N KKLN N+ +L++ T KNGI SWM+FSDLNKIN + K Sbjct: 718 L-RSQKNLKKLNFINNINLLINQTKKNGISSWMLFSDLNKINKNESLKLYLLFKLLLNPK 776 Query: 781 XXXVDSFVNFNKHTYNFTRGLLIAHQNQQGIAYLFNDPHNNLVKDFFTQTINFETRAK 838 ++ +F H YNF RGLLI++QN+QGIA +FNDP+N LVK+F + I+FET K Sbjct: 777 LLMINCCNDFTNHAYNFIRGLLISYQNKQGIALIFNDPNNKLVKNFSIKNIDFETGMK 834 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508360|ref|NP_110310.1| similar to metallo hydrolase [Mycoplasma pneumoniae M129] (561 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073094.1| hypothetical protein MG423 [Mycoplasma genitali... 981 0.0 ref|NP_072801.1| hypothetical protein MG139 [Mycoplasma genitali... 123 4e-030 >ref|NP_073094.1| hypothetical protein MG423 [Mycoplasma genitalium G-37] Length = 561 Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/561 (83%), Positives = 520/561 (92%) Query: 1 MAKINFFAFGGQDERGKNCFVLEINNDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQA 60 MAKI FFA GGQDERGKNC+VLEI+NDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQA Sbjct: 1 MAKIKFFALGGQDERGKNCYVLEIDNDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQA 60 Query: 61 RIKGIFIGNPVTENIGSLEFLFHTVGFFPIYTSTIGAVVIKTKIHENKLNIPHDELEIHE 120 R+KGIFIGN +TEN+GSLEFLFHTVGFFPIYTS+IGA +IK+KI+ENKLNI D+LEIHE Sbjct: 61 RVKGIFIGNAITENLGSLEFLFHTVGFFPIYTSSIGASIIKSKINENKLNIARDKLEIHE 120 Query: 121 LKPLETVKIGHHNITPFKVSSSIPSSFGFALHTDDGYIVYVDDFIVLNDKNIAFENQLNQ 180 LKPLET++I +H+ITPFKVSSS+PSSFGFAL+TD+GYIV++DDFIVLNDKNIAFENQLNQ Sbjct: 121 LKPLETIEISNHSITPFKVSSSLPSSFGFALNTDNGYIVFIDDFIVLNDKNIAFENQLNQ 180 Query: 181 IIPQVANKXXXXXXXXXXXXRNTGFTTPKHKSLEQLNRIIASAKGRVFAACYDSNAYSVM 240 IIP++++ RN+GFTTPKHKSLEQLNRII AKGR+F ACYDSNAYSVM Sbjct: 181 IIPKLSDNTLLLITGVGLVGRNSGFTTPKHKSLEQLNRIITPAKGRIFVACYDSNAYSVM 240 Query: 241 TLAQIARMQNRPFVIYSHSFVHLFNAIVRQKLFNNTHLNTISIEEINNSTNAIVVLTAPP 300 TLAQIARMQNRPF+IYS SFVHLFN IVRQKLFNNTHLNTISIEEINNSTN+IVVLT+PP Sbjct: 241 TLAQIARMQNRPFIIYSQSFVHLFNTIVRQKLFNNTHLNTISIEEINNSTNSIVVLTSPP 300 Query: 301 DKLYAKLFKIGTNEDERVRYRKTDSFIFMIPRIAGYEELEAQILDDVARNEVSYYNLGRE 360 DKLYAKLFKIG NEDER+RYRK+D+FIFM P++AGYEE+EAQILDD+ARNEVSYYNLGRE Sbjct: 301 DKLYAKLFKIGMNEDERIRYRKSDTFIFMTPKVAGYEEIEAQILDDIARNEVSYYNLGRE 360 Query: 361 ILSINASDEDMKFLVTSLKPKYIIPTSGLYRDFINFTMVMKQAGVEQSQVLIPFNGEVLA 420 ILSI ASDEDMKFLV+SLKPKYIIPT GLYRDFINFTMV+KQAG EQ+Q+LI FNGEVL Sbjct: 361 ILSIQASDEDMKFLVSSLKPKYIIPTGGLYRDFINFTMVLKQAGAEQNQILILFNGEVLT 420 Query: 421 INHKQIDNKKRELKLNPKCVDSAGLQEIGASIMFERDQMSEAGVVTIIIYYDSKKSEFLN 480 I +K++D+KK ELKLNPKCVDSAGLQEIGASIMFERDQMSE+GVV IIIY+D KKSEFLN Sbjct: 421 IENKKLDSKKNELKLNPKCVDSAGLQEIGASIMFERDQMSESGVVIIIIYFDQKKSEFLN 480 Query: 481 EITYSFLGVSLDSNNQVKLKTKMEELIRKQINDIKDFTTIKRRLGKDTSKELKVSIKRAV 540 EITYSFLGVSLD + KLKTKMEELI+KQINDIKDFTTIK+R+GK+ SKELKVSIKRAV Sbjct: 481 EITYSFLGVSLDVPEKDKLKTKMEELIKKQINDIKDFTTIKKRIGKEISKELKVSIKRAV 540 Query: 541 MNLFTKMTAKAPLILSTIISI 561 MNLFTKMT+KAPLILSTIISI Sbjct: 541 MNLFTKMTSKAPLILSTIISI 561 >ref|NP_072801.1| hypothetical protein MG139 [Mycoplasma genitalium G-37] Length = 569 Score = 123 bits (309), Expect = 4e-030, Method: Compositional matrix adjust. Identities = 127/563 (22%), Positives = 254/563 (45%), Gaps = 23/563 (4%) Query: 7 FAFGGQDERGKNCFVLEINNDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQARIKGIF 66 +AFGG E GKN + +E ++++ I + G + +LG+ IIP F + ENQ+++K +F Sbjct: 19 YAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGINGIIPSFEHLIENQSKVKALF 78 Query: 67 IGNPVTENIGSLEFLFHTVGFFPIYTSTIGAVVIKTKIHENKLNIPHDELEIHELKPLET 126 I + ++IG + +L V IY I A +I K++E+K + + + +T Sbjct: 79 ITHGHEDHIGGVPYLLKQVDIPVIYAPRIAASLILKKVNEHKDAKLNKIVTFDDFSEFQT 138 Query: 127 VKIGHHNITPFKVSSSIPSSFGFALHTDDGYIVYVDDFIVLNDKNIAFENQLNQI--IPQ 184 H I ++V+ SIP +FG + T +G IV D+ + A +++ + + + Sbjct: 139 ---KHFKIDFYRVNHSIPDAFGICVQTPNGNIVQSGDYRF----DFAAGSEMLDVHKVVK 191 Query: 185 VANKXXXXXXXXXXXXRNTGFTTPKHKSLEQLNRIIASAKGRVFAACYDSNAYSVMTLAQ 244 +A + GF+ + + +I+ A+GRV + SN + + + Sbjct: 192 IAERNVHVFMSESTNAEVPGFSQSEKLIYRNIQKILKEARGRVILTTFASNITRINEIIE 251 Query: 245 IARMQNRPFVIYSHSFVHLFNAIVRQKLFNNTHLNTISIEEINN--STNAIVVLTAPPDK 302 IA R + S N + L + + + +I N N +++ T + Sbjct: 252 IALNNKRKICLLGKSMDVNVNISRKIGLMAIDSNDIVEVRDIKNYPDRNILILCTGSQGE 311 Query: 303 LYAKLFKIGTNEDERVRYRKTDSFIFMIPRIAGYEELEAQILDDVARNEVSYYNLGREI- 361 A L + + V + TD+ I I G +L+++++ V+ Y ++ Sbjct: 312 EAAALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKFGVAIYENSSQLK 371 Query: 362 --LSINASDEDMKFLVTSLKPKYIIPTSGLYRDFINFTMVMKQAGVEQSQVLIPFNGEVL 419 S +A+ ++++ ++ + PKY+IP G ++ + + G++ V + NG+V+ Sbjct: 372 LHASGHATQQELQLMLNLMFPKYLIPIHGEFKMMRTIKNIANECGIKSEDVALLSNGQVM 431 Query: 420 AINHKQIDNKKRELKLNPKCVDSAGLQEIGASIMFERDQMSEAGVVTIIIYYDSKKSEFL 479 + +++ + +P ++S A I+ +R +S G+ +I+ +D K + + Sbjct: 432 YLIDEELYYSNEIINADPIYIESHNSSPDLARIIKQRQILSRDGMFAVIVVFD-KNNNII 490 Query: 480 NEITYSFLGV--SLDSNNQVKLKTKMEELIRKQINDIKDFTTIKRRLGKDTSKELKVSIK 537 T G +LDSN L TK+ +++ + + + K + +KELK K Sbjct: 491 GIPTLITRGCFFALDSN---PLMTKIAHSVKRTLESV--IQSKKFNSHEQLTKELKRVCK 545 Query: 538 RAVMNLFTKMTAKAPLILSTIIS 560 V K + PLI ST++S Sbjct: 546 ETVSYFIWKNKNRNPLI-STVLS 567 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508361|ref|NP_110311.1| ribosomal protein S15 [Mycoplasma pneumoniae M129] (86 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073095.1| ribosomal protein S15 (rps15) [Mycoplasma genit... 131 1e-033 >ref|NP_073095.1| ribosomal protein S15 (rps15) [Mycoplasma genitalium G-37] Length = 86 Score = 131 bits (330), Expect = 1e-033, Method: Compositional matrix adjust. Identities = 65/86 (75%), Positives = 75/86 (87%) Query: 1 MQIDKNGIIKSAQLHDKDVGSIQVQVSLLTSQIKQLTDHLLANKKDFISKRGLYAKVSKR 60 M+IDK IIK+ QLH DVGS+QVQ+S+LT QIK+LTDHLLANKKDFISKRGLY KVSKR Sbjct: 1 MKIDKEQIIKAHQLHKNDVGSVQVQISILTDQIKKLTDHLLANKKDFISKRGLYTKVSKR 60 Query: 61 KRLLKYLKHNDLEAYRNLVKTLNLRG 86 KRLLKYLK ++E YR+L+K LNLRG Sbjct: 61 KRLLKYLKERNIETYRDLIKNLNLRG 86 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508362|ref|NP_110312.1| similar to ATP-dependent RNA helicase deaD [Mycoplasma pneumoniae M129] (450 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073096.1| ATP-dependent RNA helicase (deaD) [Mycoplasma g... 618 e-179 ref|NP_072975.1| ATP-dependent RNA helicase, putative [Mycoplasm... 87 4e-019 >ref|NP_073096.1| ATP-dependent RNA helicase (deaD) [Mycoplasma genitalium G-37] Length = 449 Score = 618 bits (1593), Expect = e-179, Method: Compositional matrix adjust. Identities = 290/450 (64%), Positives = 357/450 (79%), Gaps = 1/450 (0%) Query: 1 MDSTFNELGVSPALIATLKDNNINQPTTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIP 60 MDSTF+ELG+S LI TL +IN+PT IQQ++IPQFL +NLIVHSPTGTGKTA F IP Sbjct: 1 MDSTFHELGISQTLIETLNALHINKPTKIQQISIPQFLSEKNLIVHSPTGTGKTAAFAIP 60 Query: 61 VIETLLKKPSKGTTQTLVVAPTRELAEQIKTTFINFAKHTHLKVVSLIGGIPIWQQLKQL 120 +IE LLK+ + TLV+APTREL EQIKTTF N AK+ L+++SLIGG+P W+Q+K++ Sbjct: 61 IIEKLLKE-DQTAKPTLVIAPTRELVEQIKTTFSNIAKNKKLRIISLIGGVPAWKQIKKI 119 Query: 121 ENQPEIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLDRGFKRKLFDLLSRIEKFEQ 180 + P+I+VGTMGR+MDLLER I F LEHLIIDEVDLMLDRGFK+++F+LL +I F+Q Sbjct: 120 KTNPQIIVGTMGRIMDLLERKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNLLEQINSFKQ 179 Query: 181 IAVYSASYNEETIETAKQITKNGIFLAAPELKQNAPEPDNKLIDQFVCYLFSNRKKQALY 240 IAVYSASYN+E I AKQIT NGIF+ +PE ++A ++KLI QFVCYLFS++KKQALY Sbjct: 180 IAVYSASYNQEAINIAKQITNNGIFIGSPEFNKDANTNNDKLIKQFVCYLFSDQKKQALY 239 Query: 241 SLVSQTRAKSIIVFCDTKKLVDELCIFLRKNDVKTYPLHGDKAQFIRERNLKLFANTTAP 300 SL+ + KSIIVFCDTKKLVD+L +FLRKN+++T+ LHGDK QFIRERNLK+FANT P Sbjct: 240 SLIKTAQVKSIIVFCDTKKLVDDLHVFLRKNELRTFALHGDKKQFIRERNLKIFANTKQP 299 Query: 301 IVLVTTDLIGRGIHVEGVDMVVNYSACVNFETYLHRMGRTGRNNHKGSCITFCTSHEKQA 360 +LVTTDLIGRGIHVE +DMV+NYSAC+N E Y++RMGRTGRNNHKG+C+TFCTS EK+ Sbjct: 300 TILVTTDLIGRGIHVEAIDMVINYSACLNLEAYINRMGRTGRNNHKGTCVTFCTSQEKKV 359 Query: 361 FLKLLEQVNDKXXXXXXXXXXXXXXXKCKTQPKKGKLSLQSVQKIYVNPRSNGTFKRVPL 420 FLK++E++ D K K + KKG +SL VQKIY N + KRVPL Sbjct: 360 FLKMVEKITDNRIAECKQMEIKLIPLKNKAKTKKGGISLDCVQKIYANAKPYDRNKRVPL 419 Query: 421 AGDLFKSRMRQPERDMQKNKLHDSDWQSNM 450 A DLFKSRMRQPE+ MQK K+HD+DWQSNM Sbjct: 420 ASDLFKSRMRQPEKAMQKQKIHDNDWQSNM 449 >ref|NP_072975.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length = 410 Score = 86.7 bits (213), Expect = 4e-019, Method: Compositional matrix adjust. Identities = 81/344 (23%), Positives = 149/344 (43%), Gaps = 36/344 (10%) Query: 27 TTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPV---IETLLKKPSKGTTQTLVVAPTR 83 T IQQ A+ + QN+I + TG+GKT + +P+ I T L +P Q ++ PT+ Sbjct: 20 TKIQQ-AVFKLWPFQNIIGIAETGSGKTFAYLLPLLDKINTSLDQP-----QAVIFVPTK 73 Query: 84 ELAEQIKTTFINFAKHTHLKVVSLIGGIPIWQQLKQLENQPEIVVGTMGRVMDLLERGVI 143 EL QI K+ K + QL ++ LL + Sbjct: 74 ELQWQIINILTEIKKY--FKTFTFATSFSSKAQL----------------IVSLLNEKYL 115 Query: 144 KFEHLEHLIIDEVDLMLDRGFKRKLFDLLSRIEKFEQI-AVYSAS-YNEETIETAKQITK 201 + +++ DE+D+ L++ ++ + + +K + + A +SA+ +N++ KQ+ Sbjct: 116 FTSKVRYVVFDEIDMFLEQSSIQQWLECVHLFQKAKPLFAFFSATLFNQQLQIIKKQVIN 175 Query: 202 NGIFLAAPELKQNAPEPDNKLIDQFVCYLFSNRKKQALYSLVSQTRAKSIIVFCDTKKLV 261 + P+ + + L+ FV +L + + L +L+ + + IIVFC +K + Sbjct: 176 TKVINLHPK------QWIHPLVKHFVVHLNTENRFSGLLALLKHHQNQQIIVFCSNQKSL 229 Query: 262 DELCIFLRKNDVKTYPLHGDKAQFIRERNLKLFANTTAPIVLVTTDLIGRGIHVEGVDMV 321 +L L N++ ++G R+ N N + LV +DL RGI + +V Sbjct: 230 KQLTQLLSNNNISFGSIYGSLTYQERKNNFTKATNNKLKL-LVVSDLFSRGIDLNYFSVV 288 Query: 322 VNYSACVNFETYLHRMGRTGRNNHKGSCITFCTSHEKQAFLKLL 365 +++ Y+HR GR R N G F + KL+ Sbjct: 289 ISWDLPKIDSFYIHRSGRVARLNSWGRSYLFWNDQNQSKLNKLI 332 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508363|ref|NP_110313.1| ribosomal protein L28 [Mycoplasma pneumoniae M129] (65 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073097.1| ribosomal protein L28 (rpL28) [Mycoplasma genit... 112 4e-028 >ref|NP_073097.1| ribosomal protein L28 (rpL28) [Mycoplasma genitalium G-37] Length = 64 Score = 112 bits (281), Expect = 4e-028, Method: Compositional matrix adjust. Identities = 54/64 (84%), Positives = 58/64 (90%) Query: 1 MAKKDQLTLRGPLYGNNRSHSKTITRRKWNVNLQPCKVKTADGKTTRILVSTRTLRTLKK 60 MAKKDQLTLRGPLYGNNRSHSKTITRRKWNVNLQ CK+K +GK TRILVST+T+RTLKK Sbjct: 1 MAKKDQLTLRGPLYGNNRSHSKTITRRKWNVNLQSCKIKDTNGKVTRILVSTKTIRTLKK 60 Query: 61 HNRL 64 NR Sbjct: 61 QNRF 64 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508364|ref|NP_110314.1| osmotical inducible protein C like family; inducable by osmotic stress and by organic hydroperoxides [Mycoplasma pneumoniae M129] (141 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073098.1| hypothetical protein MG427 [Mycoplasma genitali... 194 3e-052 >ref|NP_073098.1| hypothetical protein MG427 [Mycoplasma genitalium G-37] Length = 141 Score = 194 bits (494), Expect = 3e-052, Method: Compositional matrix adjust. Identities = 97/141 (68%), Positives = 109/141 (77%) Query: 1 MDKKYDITAVLNEDSSMTAISDQFQITLDARPKHTAKGFGPXXXXXXXXXXXXXXTANLM 60 MDKKYDITAVLN+DSS+ A+SD FQITLDARPK +KG P TAN M Sbjct: 1 MDKKYDITAVLNDDSSINAVSDNFQITLDARPKEKSKGINPLSAFLAGLAACELATANAM 60 Query: 61 APAKMITINKLLMNVTGSRSTNPTDGYFGLREINLHWEIHSPNSETEIKEFIDFVSKRCP 120 A AKMIT+NK L+N+ G R TNP+DGYFGLRE+N+HWEIHSPN E EIKEFIDFVSKRCP Sbjct: 61 AAAKMITLNKALINIKGYRLTNPSDGYFGLRELNIHWEIHSPNEEEEIKEFIDFVSKRCP 120 Query: 121 AHNTLQGVSQLKINVNVTLVH 141 AHNTL G S KIN++VTLVH Sbjct: 121 AHNTLHGTSNFKINISVTLVH 141 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508365|ref|NP_110315.1| hypothetical protein MPN626 [Mycoplasma pneumoniae M129] (172 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073099.1| hypothetical protein MG428 [Mycoplasma genitali... 239 2e-065 >ref|NP_073099.1| hypothetical protein MG428 [Mycoplasma genitalium G-37] Length = 171 Score = 239 bits (609), Expect = 2e-065, Method: Compositional matrix adjust. Identities = 116/172 (67%), Positives = 147/172 (85%), Gaps = 1/172 (0%) Query: 1 MKLQIFNTKLGLLAAKIYWKSWRHLGLSEDEIVSIALHAEHDSKKRYDPKYGLSFETYLK 60 MK I + KLGLLAAKIYWKSWR L L+ED+I+SIALHAE DSKKR++P++GLSF+ YLK Sbjct: 1 MKNNISDVKLGLLAAKIYWKSWRFLELTEDDIISIALHAEQDSKKRFNPEFGLSFDNYLK 60 Query: 61 LNGANFIKSSYRSLMNKVDDWIGFKDMKTLEEQNTVSYTPENYLRSVEFREMVHLAFKKA 120 LNGANFI+SS+RS++NKV+ + K +LE+QNTV TPENYLRS+EF+E++ AF KA Sbjct: 61 LNGANFIRSSFRSMVNKVE-LLDSKSKYSLEKQNTVLNTPENYLRSLEFKEIITKAFNKA 119 Query: 121 KNEDERQVFALYVKGYKNLEIAKKLNLTTRRVRYLISIFKDHIKVLTKRYGY 172 KN+ ER+VF+LYVKGYKN EIAKKLN++ RRVRYL+ +FK +IK+LT+RYGY Sbjct: 120 KNDQERKVFSLYVKGYKNFEIAKKLNISPRRVRYLLDLFKSYIKLLTERYGY 171 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508366|ref|NP_110316.1| PEP-dependent HPr protein kinase phosphoryltransferase (Enzyme I) [Mycoplasma pneumoniae M129] (572 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073100.1| phosphoenolpyruvate-protein phosphotransferase ... 871 0.0 >ref|NP_073100.1| phosphoenolpyruvate-protein phosphotransferase (ptsI) [Mycoplasma genitalium G-37] Length = 572 Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/572 (71%), Positives = 482/572 (84%) Query: 1 MKKLSGIGVSDGMALAKAFLVKTPEFAVNKYLKHQLTKAQAKRLLDSAFKKAVKDLEEIK 60 MKK+ GIGVSDG+A+AKAF+++TP+F V KY ++T QAK+LL SAF+KA KDLEEIK Sbjct: 1 MKKIIGIGVSDGIAVAKAFIIQTPQFDVKKYTNVKMTPTQAKKLLSSAFQKAKKDLEEIK 60 Query: 61 EITVNNINTEAGMIFDAHIQMLNDPTITEQLEQQLAQNVHPVIAVDTVFSQTATMFSQMQ 120 ITV NIN EAGMIFDAHIQ+LNDPTITEQLEQQL +N+HPVIAVD VF QTA MFS+M Sbjct: 61 TITVKNINQEAGMIFDAHIQILNDPTITEQLEQQLNKNIHPVIAVDNVFQQTALMFSEMD 120 Query: 121 DKYFQERAADILDLRQRLLAYLTGQKPHDLVKIKSDVIIVAHDLTPSQTATLNKKYVKGF 180 DKYF+ERA+DILDL QRLL+YLTG K +DL++IKSDVIIVA+DLTPSQTATLNKKYVKGF Sbjct: 121 DKYFKERASDILDLHQRLLSYLTGVKLNDLIRIKSDVIIVANDLTPSQTATLNKKYVKGF 180 Query: 181 LTEIGGRTSHAAIMARSLEIPAVVGIKGITTKVKDGQIVGVDGRKGIAGLDLNSKDTTEW 240 LTE GG+TSHAAIMARS+EIPA+VG+K IT+KV+DG+ VG++GRKGI G D +SKD T+W Sbjct: 181 LTESGGKTSHAAIMARSMEIPAIVGLKNITSKVEDGKTVGINGRKGIVGFDFSSKDITQW 240 Query: 241 KKQKALEEKYQQELKQYTNKETVTLDGHAVVVAANIGNVKDMELACQYNTNGVGLFRTEF 300 K++K LE +Q ELKQYTNK TLDG+ V+VA+NIGNVKDM+LA +YNTNG+GLFRTEF Sbjct: 241 KQEKELESNFQNELKQYTNKLVKTLDGYEVIVASNIGNVKDMDLAVEYNTNGIGLFRTEF 300 Query: 301 LYMNSQEWPDEETQYQAYKAVLEQAHGDLVIIRTLDIGGDKKLNYYEFPHEDNPFLGYRA 360 LYM+SQ+WPDE Q++AYK VL++A DLVIIRTLDIGGDKKLNY++FPHEDNPFLGYRA Sbjct: 301 LYMSSQDWPDESVQFEAYKTVLQKAKNDLVIIRTLDIGGDKKLNYFQFPHEDNPFLGYRA 360 Query: 361 LRLTLDKQDIFKTQLRALLRAADHGQLGIMFPMVATLDELLQAKQLLNQVHQELGGNKQF 420 +RLTLDKQ +FKTQLRALLRA+D+G LGIMFPMVATLDEL+Q KQLL +V QE K+F Sbjct: 361 IRLTLDKQAVFKTQLRALLRASDYGNLGIMFPMVATLDELVQVKQLLTKVQQEFNETKKF 420 Query: 421 KLGIMIEIPAAVLAANTLSHHVDFFSIGTNDLIQYSFAADRMNKNVSYLYQPLNPALLKL 480 KLGIMIEIP+A LAA+ L HVDFFSIG+NDLIQYSFAADRMNKNVSYLYQPLNPALL+L Sbjct: 421 KLGIMIEIPSAALAADCLGKHVDFFSIGSNDLIQYSFAADRMNKNVSYLYQPLNPALLRL 480 Query: 481 IYLTIEGGKVNDIWTGMCGEMAGEPLAIPXXXXXXXKEFSMSASSMFKARMIIAKLNYTE 540 I L +EGGK+N++WTGMCGEMA + AIP E SMSASSMFKARM+IAK+ E Sbjct: 481 IKLVVEGGKLNNVWTGMCGEMASDQYAIPLLLGLGLTELSMSASSMFKARMVIAKITINE 540 Query: 541 CQTLAQKALTLANAXXXXXXXXXXXXXXDIFI 572 C++L +KAL L + +IFI Sbjct: 541 CKSLVEKALKLTSDSAVRKLVENFFKKKNIFI 572 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508367|ref|NP_110317.1| phosphoglycerate mutase [Mycoplasma pneumoniae M129] (508 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073101.1| phosphoglycerate mutase (pgm) [Mycoplasma genit... 773 0.0 >ref|NP_073101.1| phosphoglycerate mutase (pgm) [Mycoplasma genitalium G-37] Length = 507 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/504 (71%), Positives = 423/504 (83%), Gaps = 1/504 (0%) Query: 1 MHKKVLLAILDGYGISNKQHGNAVYHAKTPALDSLIKDYPCVMLEASGEAVGLPQGQIGN 60 MHKKVLLAILDGYGISN +GNAV +A TP LD LI YPCV+L+ASGEAVGLP GQIGN Sbjct: 1 MHKKVLLAILDGYGISNAIYGNAVQNANTPMLDELINSYPCVLLDASGEAVGLPMGQIGN 60 Query: 61 SEVGHLNIGAGRIVYTGLSLINQNIKTGAFHHNQVLLEAIARAKANNAKLHLIGLFSHGG 120 SEVGHLNIGAGR+VYTGLSLINQ+IK +F N+ L+ I + N++K+HLIGLFS+GG Sbjct: 61 SEVGHLNIGAGRVVYTGLSLINQHIKDRSFFANKAFLKTIEHVEKNHSKIHLIGLFSNGG 120 Query: 121 VHSHMDHLYALIKLAAPQVKMVLHLFGDGRDVAPCTMKSDLEAFMVFLKDYHNVIIGTLG 180 VHSH +HL ALI+L + K+VLHLFGDGRDVAPC++K DLE M+FLK+Y NV+IGT+G Sbjct: 121 VHSHNEHLLALIELFSKHAKVVLHLFGDGRDVAPCSLKQDLEKLMIFLKNYPNVVIGTIG 180 Query: 181 GRYYGMDRDQRWDREEIAYNAILGNSKASFTDPVAYVQSAYDQKVTDEFLYPAVNGNVDK 240 GRYYGMDRDQRWDRE IAY A+LG SK F DP+ Y+++ Y ++TDEF+YPA+N N++ Sbjct: 181 GRYYGMDRDQRWDREMIAYKALLGVSKNKFNDPIGYIETQYQNQITDEFIYPAINANLNS 240 Query: 241 EQFALKDHDSVIFFNFRPDRARQMSHMLFQTDYYDYTPKAGRKYNLFFVTMMNYEGIKPS 300 +QFAL ++D VI FNFRPDRARQMSH++F ++YY+Y P+ RK NLFFVTMMNYEGI PS Sbjct: 241 DQFALNNNDGVISFNFRPDRARQMSHLIFNSNYYNYQPELKRKENLFFVTMMNYEGIVPS 300 Query: 301 AVVFPPETIPNTFGEVIAHNKLKQLRIAETEKYAHVTFFFDGGVEVDLPNETKCMVPSLK 360 FPP+TI N+ GEVIA+N LKQLRIAETEKYAHVTFFFDGG EV+L NETK ++PSLK Sbjct: 301 EFAFPPQTIKNSLGEVIANNNLKQLRIAETEKYAHVTFFFDGGFEVNLSNETKTLIPSLK 360 Query: 361 VATYDLAPEMACKGITDQLLNQINQFDLTVLNFANPDMVGHTGNYAACVQGLEALDVQIQ 420 VATYDLAPEM+CK ITD LL ++N FD TVLNFANPDMVGHTGNY AC++ LEALDVQI+ Sbjct: 361 VATYDLAPEMSCKAITDALLEKLNNFDFTVLNFANPDMVGHTGNYQACIKALEALDVQIK 420 Query: 421 RIIDFCKANHITLFLTADHGNAEEMIDSNNNPVTKHTVNKVPFVCTDTNIDLQQDSASLA 480 RI+DFCKAN IT+FLTADHGNAE MID+NNNPVTKHT+N VPFVCTD N++ Q + LA Sbjct: 421 RIVDFCKANQITMFLTADHGNAEVMIDNNNNPVTKHTINPVPFVCTDKNVNFNQ-TGILA 479 Query: 481 NIAPTILAYLGLKQPAEMTANSLL 504 NIAPTIL YL L +P EMTA SLL Sbjct: 480 NIAPTILEYLNLSKPKEMTAKSLL 503 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508368|ref|NP_110318.1| triosephosphate isomerase [Mycoplasma pneumoniae M129] (244 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073102.1| triosephosphate isomerase (tpiA) [Mycoplasma ge... 340 9e-096 >ref|NP_073102.1| triosephosphate isomerase (tpiA) [Mycoplasma genitalium G-37] Length = 244 Score = 340 bits (872), Expect = 9e-096, Method: Compositional matrix adjust. Identities = 165/244 (67%), Positives = 196/244 (80%) Query: 1 MRTKYLIGNWKTNKDLHQALAFVEQFKQHPAKTKAVLGIAPVHVHLTEVNKVXXXXXXXX 60 MRT+YLIGNWKTNK+L A++FVEQF+Q+ A +GIAPV+VHLTE+ K+ Sbjct: 1 MRTRYLIGNWKTNKNLKDAVSFVEQFQQNKLNYNAKIGIAPVYVHLTEIKKIISDSLLLF 60 Query: 61 AQDANFIASGSYTGTVSYTQLQDIKVNSVIIGHSERRKYFNETAQVINQKLKACLQAGML 120 AQDANFI SGSYTGTVS+TQLQDI VN+ IIGHSERRKY+NET+ VINQKL ACL+A M Sbjct: 61 AQDANFIESGSYTGTVSFTQLQDIGVNNSIIGHSERRKYYNETSAVINQKLFACLKASMQ 120 Query: 121 VVLCIGETEGQPISFLKEDLTQVLQGIDLSLLKQLVIAYEPIWAIGTGKTATPEIANNTI 180 VVLCIGE GQ ISFLK DLT L ID SL+K LVIAYEP+WAIGTGKTATPE+AN TI Sbjct: 121 VVLCIGEALGQEISFLKTDLTNCLDTIDKSLIKNLVIAYEPLWAIGTGKTATPEVANQTI 180 Query: 181 AQIRVYLSELYNKEIAQQTSILYGGSVAKDNIKELAQTEQIDGFLVGKASLDVNDFLVMA 240 IR Y+++LY++ +A SILYGGSV +NI++LA EQIDGFLVGKASL++ +FL MA Sbjct: 181 KTIREYINDLYDENVANNISILYGGSVDHNNIQKLAIMEQIDGFLVGKASLEIKNFLEMA 240 Query: 241 QVYA 244 +VYA Sbjct: 241 RVYA 244 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508369|ref|NP_110319.1| hypothetical protein MPN630 [Mycoplasma pneumoniae M129] (404 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073103.1| hypothetical protein MG432 [Mycoplasma genitali... 602 e-174 ref|NP_073113.1| hypothetical protein MG443 [Mycoplasma genitali... 252 6e-069 >ref|NP_073103.1| hypothetical protein MG432 [Mycoplasma genitalium G-37] Length = 398 Score = 602 bits (1551), Expect = e-174, Method: Compositional matrix adjust. Identities = 288/386 (74%), Positives = 342/386 (88%), Gaps = 3/386 (0%) Query: 1 MQDKNVKIQGNLVRVHLSGSFLKFQAIYKVKKLYLQLLILSVIAFFWGLLGVVFVQFSGL 60 M+DKN+KI GN VR+HLSGSFLKFQ+IY +KKLYLQL+IL+++AFFWGLLGV+FVQFSGL Sbjct: 1 MKDKNIKISGNFVRIHLSGSFLKFQSIYNLKKLYLQLVILTIVAFFWGLLGVIFVQFSGL 60 Query: 61 YDIGIASISQGLARLADYLIRSNKVSVDADTIYNVIFWLSQILINIPLFVLGWYKISKKF 120 YDIG+ASISQGLARL ++ I S ++VD+ TI+N IFWL+QIL N+P F+ GW+KISKKF Sbjct: 61 YDIGMASISQGLARLVNFFITSQNINVDSATIFNAIFWLTQILFNVPFFIFGWFKISKKF 120 Query: 121 TLLTLYFVVVSNVFGFAFSYIPGVENFFLFANLTELTKANGGLEQAINNQGVQLIFWEQT 180 TLLTLYFV VSN+FGF FSYIPG++NFFLFANLT T +GG E IN +GVQLIFWE++ Sbjct: 121 TLLTLYFVAVSNLFGFFFSYIPGIDNFFLFANLT--TAKDGGFENLINEKGVQLIFWEKS 178 Query: 181 AEKQISLMFYALIWGFLQAVFYSVILIIDASSGGLDFLAFWYSEKKHKDIGGILFIVNTL 240 AEKQ+SL+FY LIWGFLQAVFYSVILIIDAS+GGLDFLAFWYSEKK+KDIGGIL ++NT+ Sbjct: 179 AEKQVSLLFYGLIWGFLQAVFYSVILIIDASTGGLDFLAFWYSEKKYKDIGGILMLINTV 238 Query: 241 SFLIGYTIGTYLTGSLLAQGF-QEDRQKPFGVAFFLSPNLVFTIFMNIILGIFTSYFFPK 299 SF+IGY IGTYLTGSL Q + +D+ +PFGVAFFLSPNLVFT+ MNI+LG+FTS++FPK Sbjct: 239 SFIIGYVIGTYLTGSLSVQSYVGDDKHQPFGVAFFLSPNLVFTLLMNIVLGLFTSFYFPK 298 Query: 300 YQFVKVEVYGKHMEQMRNYLLSSNQSFAVTMFEVEGGYSRQKNQVLVTNCLFTKTAELLE 359 YQFVKVEVYGKH+E++RNYLL + Q F++TMFE EGGYSRQK QVLVTNCL K A+LLE Sbjct: 299 YQFVKVEVYGKHIEKIRNYLLDNQQWFSITMFEAEGGYSRQKTQVLVTNCLLIKAAKLLE 358 Query: 360 AVRRVDPDALFSITFIKKLDGYIYER 385 VR+ D DALFSITFIKKLDGYIY+R Sbjct: 359 DVRKFDRDALFSITFIKKLDGYIYDR 384 >ref|NP_073113.1| hypothetical protein MG443 [Mycoplasma genitalium G-37] Length = 395 Score = 252 bits (643), Expect = 6e-069, Method: Compositional matrix adjust. Identities = 145/391 (37%), Positives = 232/391 (59%), Gaps = 14/391 (3%) Query: 2 QDKNVKIQGNLVRVHLSGSFLKFQAIYKVKKL--YLQLLILSVIAFFWGLLGVVFVQFSG 59 ++ + + RV +S SFL F +Y+ KK Y+ + +LS+I F L ++F+Q +G Sbjct: 10 KESKITVASGSKRVRISNSFLMFSNLYEAKKPLKYVLVYLLSIINAF---LLLIFIQKTG 66 Query: 60 LYDIGIASISQGLARLADYLIRSNKVSVDADTIYNVIFWLSQILINIPLFVLGWYKISKK 119 LY GI+S++QG ARL L++S I+N+++WL + INIPL + + KI K Sbjct: 67 LYSFGISSLTQGFARLVFVLLKSFD-ETQRLLIFNILYWLLYVFINIPLIIFSYKKIGKN 125 Query: 120 FTLLTLYFVVVSNVFGFAFSYIPGVENFF-LFANLTELT--KANGGLEQAINNQGVQLIF 176 FT+L+ +FVV SNVFGF S IPG +N + A++T+ KA L Q+ G Sbjct: 126 FTILSTHFVVASNVFGFLISIIPGSDNLPPMLASITDTNFWKAAKDLNQS---AGFVPFL 182 Query: 177 WEQTAEKQ--ISLMFYALIWGFLQAVFYSVILIIDASSGGLDFLAFWYSEKKHKDIGGIL 234 W T++ IS YA I+GF + S++ I+ S+GG DFL +Y+ KK++ +G IL Sbjct: 183 WSDTSQGNVIISTFIYAAIYGFYNGISVSLLYILGGSAGGADFLTQYYARKKNRSVGSIL 242 Query: 235 FIVNTLSFLIGYTIGTYLTGSLLAQGFQEDRQKPFGVAFFLSPNLVFTIFMNIILGIFTS 294 F VN+ +I IG+++ GSLL Q R + V+ F SPNL+ T F ++ G S Sbjct: 243 FYVNSFILIIAILIGSFVAGSLLLQDVNNYRDSAWEVSLFFSPNLIATFFSILLTGTVVS 302 Query: 295 YFFPKYQFVKVEVYGKHMEQMRNYLLSSNQSFAVTMFEVEGGYSRQKNQVLVTNCLFTKT 354 Y FP+Y F +++V+ +E++R LLS N + ++++ E GGYS K +++V+ ++ + Sbjct: 303 YLFPRYNFAEIKVFTDKLEEVRKALLSDNANHSLSIQETLGGYSLLKKKMIVSVSMYVEI 362 Query: 355 AELLEAVRRVDPDALFSITFIKKLDGYIYER 385 L++ +R++D D L SIT I+ +DG+IY R Sbjct: 363 PHLIKIIRQIDKDCLVSITRIRGIDGHIYLR 393 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508370|ref|NP_110320.1| elongation factor Ts [Mycoplasma pneumoniae M129] (298 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073104.1| elongation factor Ts (tsf) [Mycoplasma genitali... 460 e-132 >ref|NP_073104.1| elongation factor Ts (tsf) [Mycoplasma genitalium G-37] Length = 298 Score = 460 bits (1184), Expect = e-132, Method: Compositional matrix adjust. Identities = 213/298 (71%), Positives = 266/298 (89%) Query: 1 MATKIELIKELRKTTQASMMDCKKALEQNNDDLEKAIKWLRENGIVKSAKKLGKVAADGC 60 MATKIELIKELRK+TQAS+MDCK+ALE+NNDD EKA+KWLRENGIVKS KKL KVA++G Sbjct: 1 MATKIELIKELRKSTQASVMDCKQALEKNNDDFEKAVKWLRENGIVKSTKKLNKVASEGI 60 Query: 61 IVLHSDHHKAVMVEINSQTDFVARSQELTDFAQLMISEVFKKATPTTTIEEVTQYELQGK 120 IVL S+ HKA+MVEINSQTDFVA++QEL +F+ LM+ ++F+K P T + E+ + ++ Sbjct: 61 IVLKSNLHKAIMVEINSQTDFVAKNQELKEFSDLMLEKIFEKVNPKTELVEIEKIQINND 120 Query: 121 EKVAERLALVASKTDEKIVLRRLMVFESKTNHIFSYLHANKRIGVILEVEGKFDEQDGKH 180 EKV+E+LAL+ASKTDEKIVLRR++VFE+KTN IF+YLHANKRIGVI+E++GK +E DGKH Sbjct: 121 EKVSEKLALIASKTDEKIVLRRVVVFETKTNQIFTYLHANKRIGVIIEIQGKLNEDDGKH 180 Query: 181 LAMHIAANSPQFIDQDNVDQTWLANETSIIKSQAKLEVQDNPKKAAFLDKTIAGRVNKLL 240 LAMHIAANSPQFIDQ +V+QTWL NE +II+SQA+LEV++NPKKA FL+KTI GRVNKLL Sbjct: 181 LAMHIAANSPQFIDQSDVNQTWLQNERNIIRSQAELEVKENPKKAIFLEKTIEGRVNKLL 240 Query: 241 IDICLVNQKYLVDESKTVGQFLKEKNSKVIHFVRFEVGEGIVKEAVDFASEVSAQMKK 298 ID CL+NQKYL+DE+KT+GQFLKEK +KV+ F+R+EVGEGI+KE VDF SEV+AQ+K+ Sbjct: 241 IDTCLINQKYLIDETKTIGQFLKEKQAKVLKFIRYEVGEGIIKETVDFVSEVNAQIKQ 298 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508371|ref|NP_110321.1| uridylate kinase [Mycoplasma pneumoniae M129] (235 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073105.1| uridylate kinase (pyrH) [Mycoplasma genitalium ... 314 6e-088 >ref|NP_073105.1| uridylate kinase (pyrH) [Mycoplasma genitalium G-37] Length = 243 Score = 314 bits (804), Expect = 6e-088, Method: Compositional matrix adjust. Identities = 162/234 (69%), Positives = 199/234 (85%) Query: 1 MRLKILIKLSGAGMSADSSEPFSNQFLETVIAQLKQLVPNYQIGIVIGGGNIMRGKSCSD 60 +R +I+IKLSGAG++ ++S+PFSN F ET+I QLK L +YQ+GIVIGGGNI+RG +C + Sbjct: 8 IRQRIIIKLSGAGLTKENSQPFSNDFFETIINQLKVLKESYQVGIVIGGGNIIRGNNCQE 67 Query: 61 YNITEIAGHHLGIMATVINGAFLKAKFDSHKLNSTLLSAVSCPSLATHIVSQTTIDDAFK 120 +NI E GH LGI+ATV+NG FLKAK D+H L S LLSA+SCPSLA I+SQ TID AF+ Sbjct: 68 FNIAEYHGHQLGIIATVVNGYFLKAKLDAHNLKSALLSAISCPSLAVQILSQQTIDKAFE 127 Query: 121 NHDIVIFAGGTGNPYFSTDTAVALRATQMQADIILIGKNGVDGVYTADPKKDKHAKFLAS 180 +D VIF+GGTGNPYFSTDTA+ALRA Q +A ILIGKNGVDGVYTADPKKDK+A FL + Sbjct: 128 ENDFVIFSGGTGNPYFSTDTALALRAVQTKAVAILIGKNGVDGVYTADPKKDKNATFLPT 187 Query: 181 LTYAEAIKNDLQIMDITAFTMCKENNLKVIIFNINAEHAIIKALSKQGKYTLIE 234 L Y AIKNDL+IMDITAFTMCKENNLK+IIFNINAE+A++ AL+K+G++T+IE Sbjct: 188 LNYDHAIKNDLKIMDITAFTMCKENNLKIIIFNINAENALLDALNKKGRFTIIE 241 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508372|ref|NP_110322.1| hypothetical protein MPN633 [Mycoplasma pneumoniae M129] (247 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508373|ref|NP_110323.1| hypothetical protein MPN634 [Mycoplasma pneumoniae M129] (181 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508374|ref|NP_110324.1| hypothetical protein MPN635 [Mycoplasma pneumoniae M129] (352 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508375|ref|NP_110325.1| ribosome releasing factor [Mycoplasma pneumoniae M129] (184 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073106.1| ribosome releasing factor (frr) [Mycoplasma gen... 241 5e-066 >ref|NP_073106.1| ribosome releasing factor (frr) [Mycoplasma genitalium G-37] Length = 183 Score = 241 bits (614), Expect = 5e-066, Method: Compositional matrix adjust. Identities = 116/184 (63%), Positives = 141/184 (76%), Gaps = 1/184 (0%) Query: 1 MSPEKYLNFFKETADKKFQWLKEELSKIRTGRPNPKLFDNLLVESYGDRMPMVALAQIAV 60 M+ Y++FFK+ ADKK QWLKEEL+KIRTGRPNPK+FDNLL+ESYG +MP+++LAQ+ + Sbjct: 1 MTKAHYIDFFKQAADKKIQWLKEELTKIRTGRPNPKIFDNLLIESYGQKMPLISLAQVTI 60 Query: 61 NPPREIVIKPFDVKNNINAIYSEIQRANLGVQPVIDGDKIRINFPPMTQESRLESIKQAK 120 NPPREI+IKPFD K+N NAIYSEIQRAN+GVQPVIDG+KIR+NFP +TQE+RLE+IK K Sbjct: 61 NPPREIIIKPFDPKSNTNAIYSEIQRANIGVQPVIDGEKIRVNFPQITQETRLENIKHVK 120 Query: 121 KVVEQIHQELRSVRRDTLQMIXXXXXXXXXXXXXXXXXXXXXXXQYIAQLETIQKQKEKE 180 K++EQI+QELR VRRD LQMI Y QLE IQK KEKE Sbjct: 121 KIIEQIYQELRVVRRDALQMI-KKDNHNEDLENSLKAEIEKINKNYSNQLEEIQKDKEKE 179 Query: 181 LLVV 184 LL + Sbjct: 180 LLTI 183 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508376|ref|NP_110326.1| CDP-diglyceride synthetase [Mycoplasma pneumoniae M129] (395 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073107.1| M. genitalium predicted coding region MG437 [My... 456 e-130 >ref|NP_073107.1| M. genitalium predicted coding region MG437 [Mycoplasma genitalium G-37] Length = 374 Score = 456 bits (1172), Expect = e-130, Method: Compositional matrix adjust. Identities = 230/368 (62%), Positives = 284/368 (77%), Gaps = 2/368 (0%) Query: 28 MFSAFADGFNFWSPWSTDFNSRVIHIKSDGNIETTSIVSHELHPDFKAVRFAFGLVIVLF 87 + SAFADGFNFWSPWS DFNSR + ++ + TS++S E++ +FKAVRF+F ++I+L Sbjct: 5 LISAFADGFNFWSPWSADFNSRTLKVEQASGV--TSVISTEINENFKAVRFSFSIIIILI 62 Query: 88 ISVIAVLMNWELSNSIFKNYEKLNLSLSLLSGIMVSGGMIPTFFVIYFREWNATVNWIWT 147 + VI LM WEL +I KN KL+LSL+LL+ ++ GMI TF V+YF +WNATVN IWT Sbjct: 63 VGVIGSLMIWELFTNILKNKPKLSLSLTLLNAGIIIFGMIGTFVVVYFYKWNATVNGIWT 122 Query: 148 ASFAGMIVFLWAVYMISTSFIKIRPSLQVIYSLGAVICFIACIGTIYFSVIRGWTTIFLL 207 SF +V LW +Y+ S +I+ SLQ+ YSLGA+ CFIA IGTIYFSVIRGWTTIFLL Sbjct: 123 LSFTLSVVLLWIIYIACMSKTRIKFSLQLSYSLGAIACFIASIGTIYFSVIRGWTTIFLL 182 Query: 208 IAIGVCTDTFAYLFGKRFGKNPLIKISPSKTWEGAFFGVTGTVLTISIICVLYSIPNYVR 267 +++ V DTF +LFGKRFGKNPLIKISPSKTWEGAFFG+ T++ ++++CVLYSIP +V Sbjct: 183 MSLAVSVDTFPFLFGKRFGKNPLIKISPSKTWEGAFFGIISTIVVVALLCVLYSIPFFVA 242 Query: 268 QPSIKDASKTALQTPQNYDVHNLITNVFLISFISGGSTFYIYWWVSTLALIFTASIFAIG 327 +P+ + AL TPQNYD HNLITN+FLI+FISGGS+FYIYWWVSTLALIFT S+FAIG Sbjct: 243 KPTFNQTNGIALNTPQNYDSHNLITNIFLIAFISGGSSFYIYWWVSTLALIFTGSVFAIG 302 Query: 328 GDLFFSYIKRLTKIKDFSKLLGKHGGIXXXXXXXXXXXXXXXXYHVIAGISSNQRLLMEP 387 GDLFFSYIKRL IKDFSK+LGKHGG+ YH+IAG SNQRLLMEP Sbjct: 303 GDLFFSYIKRLISIKDFSKVLGKHGGVLDRFDSSSFLISFFFVYHLIAGTISNQRLLMEP 362 Query: 388 NTYFSAVS 395 NTYFSA++ Sbjct: 363 NTYFSAIT 370 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508377|ref|NP_110327.1| specificity determining subunit for restriction enzyme belonging to the K family of S proteins [Mycoplasma pneumoniae M129] (375 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073108.1| hypothetical protein MG438 [Mycoplasma genitali... 545 e-157 >ref|NP_073108.1| hypothetical protein MG438 [Mycoplasma genitalium G-37] Length = 383 Score = 545 bits (1403), Expect = e-157, Method: Compositional matrix adjust. Identities = 255/375 (68%), Positives = 311/375 (82%), Gaps = 1/375 (0%) Query: 1 MTPKLKLNTNSNWTKKTLGSLFXXXXXXXXXXXXXAPDGKYEYFNGGIKASGRTNEFNTF 60 MTPKLKLN N NWTK+T+ SLF P+GKYEYFNGG+K SGRT++FNTF Sbjct: 1 MTPKLKLNNNINWTKRTIDSLFDLKKGEMLEKELITPEGKYEYFNGGVKNSGRTDKFNTF 60 Query: 61 KNTISIIIGGSCGYVRLADKDYFCGQSSCTLTVLDPLEIDLKFAYYALKSQEEKITSLAS 120 KNTIS+I+GGSCGYVRLADK++FCGQS+CTL +LDPLE+DLKFAYYALKSQ+E+I +LA Sbjct: 61 KNTISVIVGGSCGYVRLADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQQERIEALAF 120 Query: 121 GTTIKNIRLSDLKDLPIPLVKSIQDQRTIAHALSVFDLRIEHLNELIEVNRKLRDEYAHK 180 GTTI+NIR+SDLK+L IP + +Q IA+ LSVFD R+E+L LIE+NRKLRDEYAHK Sbjct: 121 GTTIQNIRISDLKELEIPFTSNKNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHK 180 Query: 181 LFTLDPDFLTHWNLHELHEQMGEISLGEVFHLKSGKYLKADERFEDGKFPYYGAGIESTS 240 LF+LD FL+HW L L QM EI+LGE+F+ KSGKYLK++ER E+GKFPYYGAGI++T Sbjct: 181 LFSLDEAFLSHWKLEALQSQMHEITLGEIFNFKSGKYLKSEERLEEGKFPYYGAGIDNTG 240 Query: 241 FVNEPNTKGDTLSMIANGYSIGNIRYHTIPWFNGTGGIAMEALKPNKTYVPFFYCALKYM 300 FV EPNT+ DT+S+I+NGYS+GNIRYH IPWFNGTG IA+E + N+ YVPFFYCALKY+ Sbjct: 241 FVAEPNTEKDTISIISNGYSLGNIRYHEIPWFNGTGSIALEPMN-NEIYVPFFYCALKYL 299 Query: 301 QKDLKERFKRDESPFISLKLAGEIKVPFVKSFALQRKAGKIIYLLDKTLEECKEEAKSLI 360 QKD+KER K D+SPF+SLKLAGEIKVP+VKSF LQRKAGKI++LLD+ L++ K+E SL Sbjct: 300 QKDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRKAGKIVFLLDQKLDQYKKELSSLT 359 Query: 361 SIRDNLLGKLFPTLS 375 IRD LL KLFP ++ Sbjct: 360 VIRDTLLKKLFPDMT 374 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508378|ref|NP_110328.1| conserved hypothetical protein [Mycoplasma pneumoniae M129] (287 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] 161 9e-042 ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] 70 2e-014 >ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 258 Score = 161 bits (407), Expect = 9e-042, Method: Compositional matrix adjust. Identities = 82/251 (32%), Positives = 152/251 (60%), Gaps = 14/251 (5%) Query: 38 SLSELQNLADRNTELTKNKRTLITTLRESYGLNPKGTLNLLFEGWRYTLLSQRILERWQT 97 SL++L+N +N+EL ++K+ L+T+LR+S+ ++ K N+L + WR++L ++ILE+ Sbjct: 21 SLNQLRNSFSKNSELNQDKKELVTSLRDSFEVDSKSATNVLLDAWRFSLQDEKILEKQ-- 78 Query: 98 EVGRFAKSFGNGSNQNSVQPNATLKGLKLSERSTTEIQLLAEQAITVSKQEVKEFTYKVE 157 + RF K+FG+G ++ V+P+ +KGL+L ER T + + I +S Q V +F++ Sbjct: 79 DPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIINNVIKLSSQTVTDFSFYYN 138 Query: 158 SNKQFEATVKIKADLKIDPTKAMSHIENI-FKDDETKKKDAQNSLTMSMGQNEALEATFT 216 S++ F+ ++++A D +A S++ I D + K K NS++ + FT Sbjct: 139 SSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSDIKDK---NSISADL--------IFT 187 Query: 217 YSPATQGIFGRASFDRFTSNIKLNTKLRIQVSSTSDLMKKLLENSLTSSLKDQSFDNEGV 276 Y+P + +F ++SFD I NT LR+Q+ +LM+KLL+++ L DQ+F ++ + Sbjct: 188 YTPPSSNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLLQSNFVGQLADQNFQDQTI 247 Query: 277 NLFPYTLFALL 287 +L PY L+++L Sbjct: 248 DLLPYVLYSIL 258 >ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 272 Score = 70.5 bits (171), Expect = 2e-014, Method: Compositional matrix adjust. Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 29/251 (11%) Query: 49 NTELTKNKRTLITTLRESYGLNPKGTLNLLFEGWRYTLLSQRILERWQTEVGRFAKSFGN 108 N EL+KN +T L++ Y + + +N +F W+ TLL ++LE+ + RFAK+FG Sbjct: 39 NIELSKNNA--VTFLKKGYSSDKEEVINTVFASWKTTLLDYQLLEK-PLDYSRFAKAFGV 95 Query: 109 GSNQNSVQPNATLKGLKLSERSTTEIQLLAEQAITVSKQEVKEFTYKVESNKQFEATVKI 168 ++ V PN + KGL E + I + V Q+V F Y ++N F+ + + Sbjct: 96 NKSKEDVTPNISAKGLYFDE-TYPGISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHL 154 Query: 169 KADLKIDPTKAMSHIENIFKDDETKKKDAQNSLTMSMGQNEA----------LEATFTYS 218 K + I D T ++ L + G +E+ + FTY+ Sbjct: 155 K-------------MTGIVGSDNTSTSLIKSFLASTSGVSESDFTGDKANFDGDVIFTYT 201 Query: 219 PATQG-IFGRASFDRFTSNIKLNTKLRIQVSSTSDLMKKLLE-NSLTSSLKDQSFDNEGV 276 P T ++F ++I ++I +S++ + + LL N ++ ++F + + Sbjct: 202 PPTDNRRVSESTFSSIPASINFPFDIKIDMSTSHEKLNLLLSTNEQVKKIRTRTFKGKSI 261 Query: 277 NLFPYTLFALL 287 +L P+ + LL Sbjct: 262 DLLPFFYYTLL 272 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508379|ref|NP_110329.1| hypothetical protein MPN640 [Mycoplasma pneumoniae M129] (300 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] 233 2e-063 ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] 118 9e-029 >ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 272 Score = 233 bits (594), Expect = 2e-063, Method: Compositional matrix adjust. Identities = 124/259 (47%), Positives = 164/259 (63%), Gaps = 13/259 (5%) Query: 23 ATSQVISSLSSAQKYFEANKGELNKKNVINILKDGYNSDPNKTVNALLAGWKYTLMDQKL 82 A S L AQ YF+ N EL+K N + LK GY+SD + +N + A WK TL+D +L Sbjct: 20 ACSSTDPGLEKAQAYFQRNNIELSKNNAVTFLKKGYSSDKEEVINTVFASWKTTLLDYQL 79 Query: 83 LERNLDASRFASAFGSTSKKDDITPNISEKSLFLADTFPGISSEIAKVFKVEKQTVSGFS 142 LE+ LD SRFA AFG K+D+TPNIS K L+ +T+PGIS +IA V V+ Q V F Sbjct: 80 LEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDETYPGISGQIALVLGVKSQKVVNFQ 139 Query: 143 YSWNSPKKFQVNIQIKMDGKI--DESSKALIKSFLEXXXXXXXXXXXXXXIDESEYTGEK 200 YSW + F+V I +KM G + D +S +LIKSFL + ES++TG+K Sbjct: 140 YSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFL----------ASTSGVSESDFTGDK 189 Query: 201 AKFTGNFIFTYTPPTGGARNFSDKSFDVPTSSINFPANVKIDVTTSHTKLNELLESNEQV 260 A F G+ IFTYTPPT R S+ +F +SINFP ++KID++TSH KLN LL +NEQV Sbjct: 190 ANFDGDVIFTYTPPTDN-RRVSESTFSSIPASINFPFDIKIDMSTSHEKLNLLLSTNEQV 248 Query: 261 KKMKSRQLTGKLFNLLPFF 279 KK+++R GK +LLPFF Sbjct: 249 KKIRTRTFKGKSIDLLPFF 267 >ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 258 Score = 118 bits (295), Expect = 9e-029, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 131/253 (51%), Gaps = 23/253 (9%) Query: 29 SSLSSAQKYFEANKGELN--KKNVINILKDGYNSDPNKTVNALLAGWKYTLMDQKLLERN 86 SSL+ + F N ELN KK ++ L+D + D N LL W+++L D+K+LE+ Sbjct: 20 SSLNQLRNSFSKN-SELNQDKKELVTSLRDSFEVDSKSATNVLLDAWRFSLQDEKILEKQ 78 Query: 87 LDASRFASAFGSTSKKDDITPNISEKSLFLADTF-PGISSEIAKVFKVEKQTVSGFSYSW 145 D SRF AFGS K+D+ P+ K L L + + ++S I V K+ QTV+ FS+ + Sbjct: 79 -DPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIINNVIKLSSQTVTDFSFYY 137 Query: 146 NSPKKFQVNIQIKMDGKIDESSKALIKSFLEXXXXXXXXXXXXXXIDESEYTGEKAKFTG 205 NS + F+V I+++ G D A KS+L + +S+ +K + Sbjct: 138 NSSRDFKVQIRLQATGTFDS---AQAKSYLS-----------QIGLSDSD-IKDKNSISA 182 Query: 206 NFIFTYTPPTGGARNFSDKSFDVPTSSINFPANVKIDVTTSHTKLNELLESNEQVKKMKS 265 + IFTYTPP+ FS SFD INF N+++ + + +LL+SN V ++ Sbjct: 183 DLIFTYTPPSSNL--FSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLLQSNF-VGQLAD 239 Query: 266 RQLTGKLFNLLPF 278 + + +LLP+ Sbjct: 240 QNFQDQTIDLLPY 252 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508380|ref|NP_110330.1| hypothetical protein MPN641 [Mycoplasma pneumoniae M129] (276 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] 301 4e-084 ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] 128 7e-032 >ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 258 Score = 301 bits (772), Expect = 4e-084, Method: Compositional matrix adjust. Identities = 150/260 (57%), Positives = 195/260 (75%), Gaps = 2/260 (0%) Query: 17 MLFGTALTACSNSDFQTNLTSLNQLREGVNQNTSLTQDKKAFVESLQKAFENNPEGTTKV 76 M+ G+ +TACSN TN +SLNQLR ++N+ L QDKK V SL+ +FE + + T V Sbjct: 1 MVLGSLITACSNLSSGTNFSSLNQLRNSFSKNSELNQDKKELVTSLRDSFEVDSKSATNV 60 Query: 77 LLDAWKFTLLDSKILESKDPSRFVKAFGSGKSNEDVEPNASVKGLRLDKRFEPSTANIIN 136 LLDAW+F+L D KILE +DPSRFVKAFGSGKS EDVEP+ VKGLRL +R+ + A+IIN Sbjct: 61 LLDAWRFSLQDEKILEKQDPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIIN 120 Query: 137 NVISLNEQKVEAFNIQYKSRTSFKVQVKLNAQGKYQKSQVQSYLQQIGLNDGDLKQESGT 196 NVI L+ Q V F+ Y S FKVQ++L A G + +Q +SYL QIGL+D D+K + + Sbjct: 121 NVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSDIK-DKNS 179 Query: 197 LSADLIFTYTVPESNLFSRKNFDTLMKKINFNTTLKIDMVGKDEIMKKILQSTTFTNNLS 256 +SADLIFTYT P SNLFS+ +FDTL++KINFNT L++ ++GKDE+M+K+LQS F L+ Sbjct: 180 ISADLIFTYTPPSSNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLLQS-NFVGQLA 238 Query: 257 SQTFQDQSIDLLPYLLYSIL 276 Q FQDQ+IDLLPY+LYSIL Sbjct: 239 DQNFQDQTIDLLPYVLYSIL 258 >ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 272 Score = 128 bits (321), Expect = 7e-032, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 141/284 (49%), Gaps = 22/284 (7%) Query: 1 MNKKRLLPKASLGALFMLFGTALTACSNSDFQTNLTSLNQLREGVNQNTSLTQDKKAFVE 60 + K LLP SL L + ACS++D L + + +N ++ K V Sbjct: 3 LRKIFLLPLISLSTLSV-------ACSSTD-----PGLEKAQAYFQRN-NIELSKNNAVT 49 Query: 61 SLQKAFENNPEGTTKVLLDAWKFTLLDSKILESK-DPSRFVKAFGSGKSNEDVEPNASVK 119 L+K + ++ E + +WK TLLD ++LE D SRF KAFG KS EDV PN S K Sbjct: 50 FLKKGYSSDKEEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAK 109 Query: 120 GLRLDKRFEPSTANIINNVISLNEQKVEAFNIQYKSRTSFKVQVKLNAQG-----KYQKS 174 GL D+ + P + I V+ + QKV F +K+ FKVQ+ L G S Sbjct: 110 GLYFDETY-PGISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTS 168 Query: 175 QVQSYLQQI-GLNDGDLKQESGTLSADLIFTYTVPESNL-FSRKNFDTLMKKINFNTTLK 232 ++S+L G+++ D + D+IFTYT P N S F ++ INF +K Sbjct: 169 LIKSFLASTSGVSESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFSSIPASINFPFDIK 228 Query: 233 IDMVGKDEIMKKILQSTTFTNNLSSQTFQDQSIDLLPYLLYSIL 276 IDM E + +L + + ++TF+ +SIDLLP+ Y++L Sbjct: 229 IDMSTSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508381|ref|NP_110331.1| hypothetical protein MPN642 [Mycoplasma pneumoniae M129] (279 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] 253 1e-069 ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] 126 3e-031 >ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 272 Score = 253 bits (647), Expect = 1e-069, Method: Compositional matrix adjust. Identities = 135/282 (47%), Positives = 182/282 (64%), Gaps = 13/282 (4%) Query: 1 MKL-KLYLIPLLASGIILXXXXXXXXXXXXXXXXXXKYFEANKGELNKNNVINILKDGYN 59 MKL K++L+PL++ L YF+ N EL+KNN + LK GY+ Sbjct: 1 MKLRKIFLLPLIS----LSTLSVACSSTDPGLEKAQAYFQRNNIELSKNNAVTFLKKGYS 56 Query: 60 SDPNKTVNALLAGWKYTLMDQKLLENNLDPSRFKNTFGPNKNKDDVTPNISEKGLFLNET 119 SD + +N + A WK TL+D +LLE LD SRF FG NK+K+DVTPNIS KGL+ +ET Sbjct: 57 SDKEEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDET 116 Query: 120 FTGLGSQIAEVFNVQKQIVSGFSYSWTSPKSFKVNIHIKMEGMINEKSKET--IKSFLSN 177 + G+ QIA V V+ Q V F YSW + FKV IH+KM G++ + T IKSFL++ Sbjct: 117 YPGISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLAS 176 Query: 178 KDSNGSNSVEESEYTGDKAKFTADFIFSYTPPTGGTRSLTDKSFDVITNMINFPADVKID 237 ++ V ES++TGDKA F D IF+YTPPT R +++ +F I INFP D+KID Sbjct: 177 -----TSGVSESDFTGDKANFDGDVIFTYTPPTDN-RRVSESTFSSIPASINFPFDIKID 230 Query: 238 VNTSHNKLNELLEKNDQVKRMKSRTFNGRNIDLLPFFYYALL 279 ++TSH KLN LL N+QVK++++RTF G++IDLLPFFYY LL Sbjct: 231 MSTSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 >ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 258 Score = 126 bits (316), Expect = 3e-031, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 17/240 (7%) Query: 43 GELN--KNNVINILKDGYNSDPNKTVNALLAGWKYTLMDQKLLENNLDPSRFKNTFGPNK 100 ELN K ++ L+D + D N LL W+++L D+K+LE DPSRF FG K Sbjct: 33 SELNQDKKELVTSLRDSFEVDSKSATNVLLDAWRFSLQDEKILEKQ-DPSRFVKAFGSGK 91 Query: 101 NKDDVTPNISEKGLFLNETFT-GLGSQIAEVFNVQKQIVSGFSYSWTSPKSFKVNIHIKM 159 +K+DV P+ KGL L E +T + S I V + Q V+ FS+ + S + FKV I ++ Sbjct: 92 SKEDVEPSTGVKGLRLVERYTQNVASIINNVIKLSSQTVTDFSFYYNSSRDFKVQIRLQA 151 Query: 160 EGMINEKSKETIKSFLSNKDSNGSNSVEESEYTGDKAKFTADFIFSYTPPTGGTRSLTDK 219 G + ++ S + DS+ DK +AD IF+YTPP+ + Sbjct: 152 TGTFDSAQAKSYLSQIGLSDSD----------IKDKNSISADLIFTYTPPSSNL--FSKS 199 Query: 220 SFDVITNMINFPADVKIDVNTSHNKLNELLEKNDQVKRMKSRTFNGRNIDLLPFFYYALL 279 SFD + INF ++++ + + +LL+ N V ++ + F + IDLLP+ Y++L Sbjct: 200 SFDTLLRKINFNTNLRLQIIGKDELMQKLLQSN-FVGQLADQNFQDQTIDLLPYVLYSIL 258 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508382|ref|NP_110332.1| hypothetical protein MPN643 [Mycoplasma pneumoniae M129] (302 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] 298 6e-083 ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] 99 7e-023 >ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 258 Score = 298 bits (762), Expect = 6e-083, Method: Compositional matrix adjust. Identities = 147/259 (56%), Positives = 189/259 (72%), Gaps = 1/259 (0%) Query: 44 MLFGTALTACSNSGFEANLTSLNQLRTSASKNTNLTQNKADLVTALKSAFENNPEGTTRV 103 M+ G+ +TACSN N +SLNQLR S SKN+ L Q+K +LVT+L+ +FE + + T V Sbjct: 1 MVLGSLITACSNLSSGTNFSSLNQLRNSFSKNSELNQDKKELVTSLRDSFEVDSKSATNV 60 Query: 104 LLDAWKFTLLDAQILEKQDXXXXXXXXXXXRSIEDVEPSAGVRGLRLVERYTQDTANIIN 163 LLDAW+F+L D +ILEKQD +S EDVEPS GV+GLRLVERYTQ+ A+IIN Sbjct: 61 LLDAWRFSLQDEKILEKQDPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIIN 120 Query: 164 NVIKLDKQKVEAFSIQYKDPKNFRVQVKINAKGNYKKDTVKTYLSQVGLSDGDLNDTGTL 223 NVIKL Q V FS Y ++F+VQ+++ A G + K+YLSQ+GLSD D+ D ++ Sbjct: 121 NVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSDIKDKNSI 180 Query: 224 EAEIIYTYMPPAASFFSASKFDKLTRAINFNTNLRIQIIGKDSVMTKLLQQSSFVKQLAD 283 A++I+TY PP+++ FS S FD L R INFNTNLR+QIIGKD +M KLL QS+FV QLAD Sbjct: 181 SADLIFTYTPPSSNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLL-QSNFVGQLAD 239 Query: 284 QKFQDQSINLLPYVLYSIL 302 Q FQDQ+I+LLPYVLYSIL Sbjct: 240 QNFQDQTIDLLPYVLYSIL 258 >ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 272 Score = 98.6 bits (244), Expect = 7e-023, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 12/237 (5%) Query: 75 NTNLTQNKADLVTALKSAFENNPEGTTRVLLDAWKFTLLDAQILEKQ-DXXXXXXXXXXX 133 N L++N A VT LK + ++ E + +WK TLLD Q+LEK D Sbjct: 39 NIELSKNNA--VTFLKKGYSSDKEEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVN 96 Query: 134 RSIEDVEPSAGVRGLRLVERYTQDTANIINNVIKLDKQKVEAFSIQYKDPKNFRVQVKIN 193 +S EDV P+ +GL E Y + I V+ + QKV F +K+ +F+VQ+ + Sbjct: 97 KSKEDVTPNISAKGLYFDETYPGISGQIA-LVLGVKSQKVVNFQYSWKNNLDFKVQIHLK 155 Query: 194 AKG-----NYKKDTVKTYL-SQVGLSDGDL-NDTGTLEAEIIYTYMPPAAS-FFSASKFD 245 G N +K++L S G+S+ D D + ++I+TY PP + S S F Sbjct: 156 MTGIVGSDNTSTSLIKSFLASTSGVSESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFS 215 Query: 246 KLTRAINFNTNLRIQIIGKDSVMTKLLQQSSFVKQLADQKFQDQSINLLPYVLYSIL 302 + +INF +++I + + LL + VK++ + F+ +SI+LLP+ Y++L Sbjct: 216 SIPASINFPFDIKIDMSTSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508383|ref|NP_110333.1| hypothetical protein MPN644 [Mycoplasma pneumoniae M129] (283 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] 272 3e-075 ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] 136 2e-034 >ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 272 Score = 272 bits (695), Expect = 3e-075, Method: Compositional matrix adjust. Identities = 140/272 (51%), Positives = 179/272 (65%), Gaps = 2/272 (0%) Query: 12 LDALFLLFGTALSACSSTATNVISSLSSAQKYFDAHKSELIKKNVINLLKEGYSTDSKAT 71 L +FLL +LS S ++ L AQ YF + EL K N + LK+GYS+D + Sbjct: 3 LRKIFLLPLISLSTLSVACSSTDPGLEKAQAYFQRNNIELSKNNAVTFLKKGYSSDKEEV 62 Query: 72 VNSLFAGWKYTLMDQKILERNLDASRFTKAFGTNKGKDDVIPSISEKGLFLDETYSGVSQ 131 +N++FA WK TL+D ++LE+ LD SRF KAFG NK K+DV P+IS KGL+ DETY G+S Sbjct: 63 INTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDETYPGISG 122 Query: 132 QIAKVLGVQSQKVTGFSYSWSSTTNFKVVISFMMQGIVGSGEESNSLIKSFLSSGNNGNV 191 QIA VLGV+SQKV F YSW + +FKV I M GIVGS S SLIKSFL+S V Sbjct: 123 QIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLAS--TSGV 180 Query: 192 TEXXXXXXXXXXXXTFIFTFTPPTDGRRFAFSNFDPITGTINFPANLQIDASTTHEKLNI 251 +E IFT+TPPTD RR + S F I +INFP +++ID ST+HEKLN+ Sbjct: 181 SESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFSSIPASINFPFDIKIDMSTSHEKLNL 240 Query: 252 LMQNNEHVKKIKSRSFTGKSFDLLPFYFYALL 283 L+ NE VKKI++R+F GKS DLLPF++Y LL Sbjct: 241 LLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 >ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 258 Score = 136 bits (343), Expect = 2e-034, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 149/272 (54%), Gaps = 19/272 (6%) Query: 17 LLFGTALSACS--STATNVISSLSSAQKYFDAHKSEL--IKKNVINLLKEGYSTDSKATV 72 ++ G+ ++ACS S+ TN SSL+ + F + SEL KK ++ L++ + DSK+ Sbjct: 1 MVLGSLITACSNLSSGTN-FSSLNQLRNSF-SKNSELNQDKKELVTSLRDSFEVDSKSAT 58 Query: 73 NSLFAGWKYTLMDQKILERNLDASRFTKAFGTNKGKDDVIPSISEKGLFLDETYS-GVSQ 131 N L W+++L D+KILE+ D SRF KAFG+ K K+DV PS KGL L E Y+ V+ Sbjct: 59 NVLLDAWRFSLQDEKILEKQ-DPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVAS 117 Query: 132 QIAKVLGVQSQKVTGFSYSWSSTTNFKVVISFMMQGIVGSGEESNSLIKSFLSSGNNGNV 191 I V+ + SQ VT FS+ ++S+ +FKV I G S + + L + LS + Sbjct: 118 IINNVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSD---- 173 Query: 192 TEXXXXXXXXXXXXTFIFTFTPPTDGRRFAFSNFDPITGTINFPANLQIDASTTHEKLNI 251 IFT+TPP+ F+ S+FD + INF NL++ E + Sbjct: 174 -----IKDKNSISADLIFTYTPPS-SNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQK 227 Query: 252 LMQNNEHVKKIKSRSFTGKSFDLLPFYFYALL 283 L+Q+N V ++ ++F ++ DLLP+ Y++L Sbjct: 228 LLQSN-FVGQLADQNFQDQTIDLLPYVLYSIL 258 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508384|ref|NP_110334.1| hypothetical protein MPN645 [Mycoplasma pneumoniae M129] (283 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] 271 6e-075 ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] 140 1e-035 >ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 272 Score = 271 bits (693), Expect = 6e-075, Method: Compositional matrix adjust. Identities = 135/252 (53%), Positives = 170/252 (67%), Gaps = 8/252 (3%) Query: 33 LSSAQKYFESSQGELNKKNVIKILKEGYESDANKAVHALLAGWKYTLMDQQLLSKEVD-S 91 L AQ YF+ + EL+K N + LK+GY SD + ++ + A WK TL+D QLL K +D S Sbjct: 28 LEKAQAYFQRNNIELSKNNAVTFLKKGYSSDKEEVINTVFASWKTTLLDYQLLEKPLDYS 87 Query: 92 RFIKAFGSGRDKGDVTPSVSEKGLYLNETYTGFSSQIAKVLGVQSQTVKQFNYKWSSNSD 151 RF KAFG + K DVTP++S KGLY +ETY G S QIA VLGV+SQ V F Y W +N D Sbjct: 88 RFAKAFGVNKSKEDVTPNISAKGLYFDETYPGISGQIALVLGVKSQKVVNFQYSWKNNLD 147 Query: 152 FKVQIQISMKGKVGSDSESQQLIKSFLXXXXXXXXXXXXVKETDFNGDSANFDGFFTFTY 211 FKVQI + M G VGSD+ S LIKSFL V E+DF GD ANFDG FTY Sbjct: 148 FKVQIHLKMTGIVGSDNTSTSLIKSFLASTSG-------VSESDFTGDKANFDGDVIFTY 200 Query: 212 TPPTQSRKFGATSFDPLTTKINFPADLQIDVSTTHQKLNTLMEANEQVKQIKSRKFTGKT 271 TPPT +R+ ++F + INFP D++ID+ST+H+KLN L+ NEQVK+I++R F GK+ Sbjct: 201 TPPTDNRRVSESTFSSIPASINFPFDIKIDMSTSHEKLNLLLSTNEQVKKIRTRTFKGKS 260 Query: 272 FDLLPFFYYALL 283 DLLPFFYY LL Sbjct: 261 IDLLPFFYYTLL 272 >ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 258 Score = 140 bits (353), Expect = 1e-035, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 143/256 (55%), Gaps = 20/256 (7%) Query: 31 SSLSSAQKYFESSQGELN--KKNVIKILKEGYESDANKAVHALLAGWKYTLMDQQLLSKE 88 SSL+ + F S ELN KK ++ L++ +E D+ A + LL W+++L D+++L K+ Sbjct: 20 SSLNQLRNSF-SKNSELNQDKKELVTSLRDSFEVDSKSATNVLLDAWRFSLQDEKILEKQ 78 Query: 89 VDSRFIKAFGSGRDKGDVTPSVSEKGLYLNETYT-GFSSQIAKVLGVQSQTVKQFNYKWS 147 SRF+KAFGSG+ K DV PS KGL L E YT +S I V+ + SQTV F++ ++ Sbjct: 79 DPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIINNVIKLSSQTVTDFSFYYN 138 Query: 148 SNSDFKVQIQISMKGKVGSDSESQQLIKSFLXXXXXXXXXXXXVKETDFNGDSANFDGFF 207 S+ DFKVQI++ G S KS+L + ++D D + Sbjct: 139 SSRDFKVQIRLQATGTFDSAQA-----KSYL--------SQIGLSDSDIK-DKNSISADL 184 Query: 208 TFTYTPPTQSRKFGATSFDPLTTKINFPADLQIDVSTTHQKLNTLMEANEQVKQIKSRKF 267 FTYTPP+ S F +SFD L KINF +L++ + + + L+++N V Q+ + F Sbjct: 185 IFTYTPPS-SNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLLQSNF-VGQLADQNF 242 Query: 268 TGKTFDLLPFFYYALL 283 +T DLLP+ Y++L Sbjct: 243 QDQTIDLLPYVLYSIL 258 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508385|ref|NP_110335.1| hypothetical protein MPN646 [Mycoplasma pneumoniae M129] (277 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] 298 4e-083 ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] 108 5e-026 >ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 258 Score = 298 bits (763), Expect = 4e-083, Method: Compositional matrix adjust. Identities = 147/261 (56%), Positives = 194/261 (74%), Gaps = 3/261 (1%) Query: 17 LLLGTAFTACSNYDFQANLTSLNQLRTSANKDINLTQDKNTLIDALKTAFENNSEGTTKV 76 ++LG+ TACSN N +SLNQLR S +K+ L QDK L+ +L+ +FE +S+ T V Sbjct: 1 MVLGSLITACSNLSSGTNFSSLNQLRNSFSKNSELNQDKKELVTSLRDSFEVDSKSATNV 60 Query: 77 LLDAWKFSLYDAKILEKQDPVKFVKAFGSGKSKEDIEPSAGVRGLRFVERFGDNTASLIK 136 LLDAW+FSL D KILEKQDP +FVKAFGSGKSKED+EPS GV+GLR VER+ N AS+I Sbjct: 61 LLDAWRFSLQDEKILEKQDPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIIN 120 Query: 137 NAILLDQQKVEVFNIRFKSSRDFTIQIKLNAKGNYKKSEVEKYKSQIGVQDNELGDKEEG 196 N I L Q V F+ + SSRDF +QI+L A G + ++ + Y SQIG+ D+++ DK Sbjct: 121 NVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSDIKDK--N 178 Query: 197 TLEADLIFTYTPPASNLFSKSNFDKLTKSINFNTNLKLEMVGKDEVMRKILNSSAFTNNL 256 ++ ADLIFTYTPP+SNLFSKS+FD L + INFNTNL+L+++GKDE+M+K+L S+ F L Sbjct: 179 SISADLIFTYTPPSSNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLLQSN-FVGQL 237 Query: 257 ASVNYPNQAVNLLPYVLYSIL 277 A N+ +Q ++LLPYVLYSIL Sbjct: 238 ADQNFQDQTIDLLPYVLYSIL 258 >ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 272 Score = 108 bits (270), Expect = 5e-026, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 141/276 (51%), Gaps = 22/276 (7%) Query: 15 LFLL----LGTAFTACSNYDFQANLTSLNQLRTSANKDINLTQDKNTLIDALKTAFENNS 70 +FLL L T ACS+ D L + + ++ N+ KN + LK + ++ Sbjct: 6 IFLLPLISLSTLSVACSSTD-----PGLEKAQAYFQRN-NIELSKNNAVTFLKKGYSSDK 59 Query: 71 EGTTKVLLDAWKFSLYDAKILEKQ-DPVKFVKAFGSGKSKEDIEPSAGVRGLRFVERFGD 129 E + +WK +L D ++LEK D +F KAFG KSKED+ P+ +GL F E + Sbjct: 60 EEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDETY-P 118 Query: 130 NTASLIKNAILLDQQKVEVFNIRFKSSRDFTIQIKLNAKG-----NYKKSEVEKY-KSQI 183 + I + + QKV F +K++ DF +QI L G N S ++ + S Sbjct: 119 GISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLASTS 178 Query: 184 GVQDNEL-GDKEEGTLEADLIFTYTPPASN-LFSKSNFDKLTKSINFNTNLKLEMVGKDE 241 GV +++ GDK + D+IFTYTPP N S+S F + SINF ++K++M E Sbjct: 179 GVSESDFTGDK--ANFDGDVIFTYTPPTDNRRVSESTFSSIPASINFPFDIKIDMSTSHE 236 Query: 242 VMRKILNSSAFTNNLASVNYPNQAVNLLPYVLYSIL 277 + +L+++ + + + ++++LLP+ Y++L Sbjct: 237 KLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508386|ref|NP_110336.1| hypothetical protein MPN647 [Mycoplasma pneumoniae M129] (290 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] 291 5e-081 ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] 137 1e-034 >ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 272 Score = 291 bits (745), Expect = 5e-081, Method: Compositional matrix adjust. Identities = 150/280 (53%), Positives = 190/280 (67%), Gaps = 11/280 (3%) Query: 12 LGSLFFLFGTALSACSSATTEVISSFSSAQKYFSANKKELNKRNLVTILKDSYNSDPKST 71 L +F L +LS S A + AQ YF N EL+K N VT LK Y+SD + Sbjct: 3 LRKIFLLPLISLSTLSVACSSTDPGLEKAQAYFQRNNIELSKNNAVTFLKKGYSSDKEEV 62 Query: 72 VNSLLAGWKYSLLDQKLLENPMDPSRFSKAFGSN-TKDDVNPNISEKGLYLAETYPGVSS 130 +N++ A WK +LLD +LLE P+D SRF+KAFG N +K+DV PNIS KGLY ETYPG+S Sbjct: 63 INTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDETYPGISG 122 Query: 131 QIAQVLGVQSQKVTGFSYSWTSKTKFEVKILIKMKGKVGSDGTSQTLIKSFLGTDXXXXX 190 QIA VLGV+SQKV F YSW + F+V+I +KM G VGSD TS +LIKSFL + Sbjct: 123 QIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLAS------ 176 Query: 191 XXXXXXXVTEKDFEGDQANFDGNFIFTYTQPSDGRRLASNNFDPITGTINFPADLQIEVS 250 V+E DF GD+ANFDG+ IFTYT P+D RR++ + F I +INFP D++I++S Sbjct: 177 ----TSGVSESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFSSIPASINFPFDIKIDMS 232 Query: 251 TSHEKLNTLMTTNTQVGMIKNRSFKGKSFNLLPFFYYALL 290 TSHEKLN L++TN QV I+ R+FKGKS +LLPFFYY LL Sbjct: 233 TSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 >ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length = 258 Score = 137 bits (345), Expect = 1e-034, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 156/279 (55%), Gaps = 26/279 (9%) Query: 17 FLFGTALSACSSATTEV-ISSFSSAQKYFSANKKELN--KRNLVTILKDSYNSDPKSTVN 73 + G+ ++ACS+ ++ SS + + FS N ELN K+ LVT L+DS+ D KS N Sbjct: 1 MVLGSLITACSNLSSGTNFSSLNQLRNSFSKNS-ELNQDKKELVTSLRDSFEVDSKSATN 59 Query: 74 SLLAGWKYSLLDQKLLENPMDPSRFSKAFGS-NTKDDVNPNISEKGLYLAETY-PGVSSQ 131 LL W++SL D+K+LE DPSRF KAFGS +K+DV P+ KGL L E Y V+S Sbjct: 60 VLLDAWRFSLQDEKILE-KQDPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASI 118 Query: 132 IAQVLGVQSQKVTGFSYSWTSKTKFEVKILIKMKGKVGSDGTSQTLIKSFLGTDXXXXXX 191 I V+ + SQ VT FS+ + S F+V+I ++ G S KS+L Sbjct: 119 INNVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQA-----KSYLS-------- 165 Query: 192 XXXXXXVTEKDFEGDQANFDGNFIFTYTQPSDGRRLASNNFDPITGTINFPADLQIEVST 251 +++ D + D+ + + IFTYT PS + ++FD + INF +L++++ Sbjct: 166 ---QIGLSDSDIK-DKNSISADLIFTYTPPS-SNLFSKSSFDTLLRKINFNTNLRLQIIG 220 Query: 252 SHEKLNTLMTTNTQVGMIKNRSFKGKSFNLLPFFYYALL 290 E + L+ +N VG + +++F+ ++ +LLP+ Y++L Sbjct: 221 KDELMQKLLQSNF-VGQLADQNFQDQTIDLLPYVLYSIL 258 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508387|ref|NP_110337.1| hypothetical protein MPN648 [Mycoplasma pneumoniae M129] (136 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508388|ref|NP_110338.1| hypothetical protein MPN649 [Mycoplasma pneumoniae M129] (136 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508389|ref|NP_110339.1| hypothetical protein MPN650 [Mycoplasma pneumoniae M129] (101 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508390|ref|NP_110340.1| similar to mannitol-specific PRS EIIBC [Mycoplasma pneumoniae M129] (379 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508391|ref|NP_110341.1| mannitol-1-phosphate 5-dehyrogenase (EC 1.1.1.17) [Mycoplasma pneumoniae M129] (364 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508392|ref|NP_110342.1| PTS system mannitol-specific component IIA (EIIA-MTL) [Mycoplasma pneumoniae M129] (143 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508393|ref|NP_110343.1| hypothetical protein MPN654 [Mycoplasma pneumoniae M129] (129 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508394|ref|NP_110344.1| hypothetical protein MPN655 [Mycoplasma pneumoniae M129] (204 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508395|ref|NP_110345.1| similar to GTP-binding protein [Mycoplasma pneumoniae M129] (271 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073112.1| hypothetical protein MG442 [Mycoplasma genitali... 360 e-101 >ref|NP_073112.1| hypothetical protein MG442 [Mycoplasma genitalium G-37] Length = 270 Score = 360 bits (923), Expect = e-101, Method: Compositional matrix adjust. Identities = 183/271 (67%), Positives = 216/271 (79%), Gaps = 1/271 (0%) Query: 1 MDTFTSAVKINWFPGHMKKTHDQLKKLASSLDGVIEVVDARAPTLTQNPEITAYFTNKPK 60 MDT+TSA KINWFPGHMKK HDQLKKL+S +DG+IE+VDARAPTLT N EI +YF NKPK Sbjct: 1 MDTYTSA-KINWFPGHMKKIHDQLKKLSSQIDGIIEIVDARAPTLTHNSEIISYFLNKPK 59 Query: 61 LTLALKADLAQTVANSNILWGTLKQGLQLKRLVIKKLQTLFQAKKNQLKAKGLLVHQFRL 120 L LALK DLAQ N IL+G+LK+ +LK+ V+K L TLF K+ QLKAKGLL+ QFRL Sbjct: 60 LILALKTDLAQYKPNKKILFGSLKEPFKLKKKVLKTLTTLFANKRQQLKAKGLLIKQFRL 119 Query: 121 AVIGMPNVGKSSXXXXXXXXXXXQVANRAGVTKSMSWNQISSEFYLSDTPGVFFKRIDEM 180 AVIGMPNVGKSS +VANRAG+TKS++W QIS E LSDTPGVF KRIDE+ Sbjct: 120 AVIGMPNVGKSSLINLLINKNHLKVANRAGITKSLNWIQISPELLLSDTPGVFLKRIDEI 179 Query: 181 AVGYKLVLTNVIKREVVPLEDVGAFAFCYLSKHYPQLLPYEGTDFTEFLHKFAISRKLLQ 240 +GYKLVLTNVI+REVV +E+VG FAF YL KHY QLLP+E F FL KFA R L++ Sbjct: 180 QIGYKLVLTNVIRREVVNIEEVGMFAFNYLKKHYKQLLPFEADSFINFLEKFAKVRGLIK 239 Query: 241 KSNQLNINLACELFVSELINGKYGKLSFELD 271 K+N+LN NLACE+F++ELINGKYGKLS+EL+ Sbjct: 240 KANELNTNLACEIFINELINGKYGKLSYELN 270 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508396|ref|NP_110346.1| hypothetical protein MPN657 [Mycoplasma pneumoniae M129] (401 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073113.1| hypothetical protein MG443 [Mycoplasma genitali... 582 e-168 ref|NP_073103.1| hypothetical protein MG432 [Mycoplasma genitali... 204 1e-054 >ref|NP_073113.1| hypothetical protein MG443 [Mycoplasma genitalium G-37] Length = 395 Score = 582 bits (1501), Expect = e-168, Method: Compositional matrix adjust. Identities = 285/390 (73%), Positives = 333/390 (85%), Gaps = 3/390 (0%) Query: 11 KDQDKTETTSASKRAKITSSLLMFSALYEAKKPLKYTIVYIXXXXXXXXXXXXIQQTGLY 70 K + K S SKR +I++S LMFS LYEAKKPLKY +VY+ IQ+TGLY Sbjct: 9 KKESKITVASGSKRVRISNSFLMFSNLYEAKKPLKYVLVYLLSIINAFLLLIFIQKTGLY 68 Query: 71 SFGISSLTQGFARLLFVLLKNLEDGQRNLVFNIFYWLFYVIVNIPLIIFSYKKIGKRFTI 130 SFGISSLTQGFARL+FVLLK+ ++ QR L+FNI YWL YV +NIPLIIFSYKKIGK FTI Sbjct: 69 SFGISSLTQGFARLVFVLLKSFDETQRLLIFNILYWLLYVFINIPLIIFSYKKIGKNFTI 128 Query: 131 LSTHYVVASNVFGFIFSIIPGANQLPSMLSAVHHTEFWEDAKKAEGVDQSALFVPFLWND 190 LSTH+VVASNVFGF+ SIIPG++ LP ML+++ T FW K A+ ++QSA FVPFLW+D Sbjct: 129 LSTHFVVASNVFGFLISIIPGSDNLPPMLASITDTNFW---KAAKDLNQSAGFVPFLWSD 185 Query: 191 TSQGNVIISTFIYAGIYGFVNGTSLAILYILGSCAGGADFLTQYFARKKNRSVGPILFYV 250 TSQGNVIISTFIYA IYGF NG S+++LYILG AGGADFLTQY+ARKKNRSVG ILFYV Sbjct: 186 TSQGNVIISTFIYAAIYGFYNGISVSLLYILGGSAGGADFLTQYYARKKNRSVGSILFYV 245 Query: 251 NTFILIIAILMGSFVAGSIVLQDIPDYKKSAWQVNLFFSPNLIATFFSVLFTGTVVSHLF 310 N+FILIIAIL+GSFVAGS++LQD+ +Y+ SAW+V+LFFSPNLIATFFS+L TGTVVS+LF Sbjct: 246 NSFILIIAILIGSFVAGSLLLQDVNNYRDSAWEVSLFFSPNLIATFFSILLTGTVVSYLF 305 Query: 311 PRYNFAEIKVFTDKIEEVRLALLNDKATHSLSIQETMGGYSLAKKRMIVSVTMYVEIPNL 370 PRYNFAEIKVFTDK+EEVR ALL+D A HSLSIQET+GGYSL KK+MIVSV+MYVEIP+L Sbjct: 306 PRYNFAEIKVFTDKLEEVRKALLSDNANHSLSIQETLGGYSLLKKKMIVSVSMYVEIPHL 365 Query: 371 IRIIRKIDKDCLVSITRIRGIDGYIYLRSQ 400 I+IIR+IDKDCLVSITRIRGIDG+IYLR Sbjct: 366 IKIIRQIDKDCLVSITRIRGIDGHIYLRQN 395 >ref|NP_073103.1| hypothetical protein MG432 [Mycoplasma genitalium G-37] Length = 398 Score = 204 bits (520), Expect = 1e-054, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 211/384 (54%), Gaps = 16/384 (4%) Query: 24 RAKITSSLLMFSALYEAKKP-LKYTIVYIXXXXXXXXXXXXIQQTGLYSFGISSLTQGFA 82 R ++ S L F ++Y KK L+ I+ I +Q +GLY G++S++QG A Sbjct: 14 RIHLSGSFLKFQSIYNLKKLYLQLVILTIVAFFWGLLGVIFVQFSGLYDIGMASISQGLA 73 Query: 83 RLL--FVLLKNLEDGQRNLVFNIFYWLFYVIVNIPLIIFSYKKIGKRFTILSTHYVVASN 140 RL+ F+ +N+ +FN +WL ++ N+P IF + KI K+FT+L+ ++V SN Sbjct: 74 RLVNFFITSQNINVDSAT-IFNAIFWLTQILFNVPFFIFGWFKISKKFTLLTLYFVAVSN 132 Query: 141 VFGFIFSIIPGANQ--LPSMLSAVHHTEFWEDAKKAEGVDQSALFVPFLWNDTSQGNVII 198 +FGF FS IPG + L + L+ F E+ +GV W +++ V Sbjct: 133 LFGFFFSYIPGIDNFFLFANLTTAKDGGF-ENLINEKGVQ------LIFWEKSAEKQV-- 183 Query: 199 STFIYAGIYGFVNGTSLAILYILGSCAGGADFLTQYFARKKNRSVGPILFYVNTFILIIA 258 S Y I+GF+ +++ I+ + GG DFL +++ KK + +G IL +NT II Sbjct: 184 SLLFYGLIWGFLQAVFYSVILIIDASTGGLDFLAFWYSEKKYKDIGGILMLINTVSFIIG 243 Query: 259 ILMGSFVAGSIVLQD-IPDYKKSAWQVNLFFSPNLIATFFSVLFTGTVVSHLFPRYNFAE 317 ++G+++ GS+ +Q + D K + V F SPNL+ T + G S FP+Y F + Sbjct: 244 YVIGTYLTGSLSVQSYVGDDKHQPFGVAFFLSPNLVFTLLMNIVLGLFTSFYFPKYQFVK 303 Query: 318 IKVFTDKIEEVRLALLNDKATHSLSIQETMGGYSLAKKRMIVSVTMYVEIPNLIRIIRKI 377 ++V+ IE++R LL+++ S+++ E GGYS K +++V+ + ++ L+ +RK Sbjct: 304 VEVYGKHIEKIRNYLLDNQQWFSITMFEAEGGYSRQKTQVLVTNCLLIKAAKLLEDVRKF 363 Query: 378 DKDCLVSITRIRGIDGYIYLRSQD 401 D+D L SIT I+ +DGYIY R + Sbjct: 364 DRDALFSITFIKKLDGYIYDRRTN 387 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508397|ref|NP_110347.1| ribosomal protein L19 [Mycoplasma pneumoniae M129] (119 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073114.1| ribosomal protein L19 (rpL19) [Mycoplasma genit... 219 7e-060 >ref|NP_073114.1| ribosomal protein L19 (rpL19) [Mycoplasma genitalium G-37] Length = 119 Score = 219 bits (558), Expect = 7e-060, Method: Compositional matrix adjust. Identities = 107/118 (90%), Positives = 114/118 (96%) Query: 1 MKKINKQALIDLVEQKQLKAYVPEFSAGDEVNVAIKLKEKEKVRIQNFTGTVLRRRGKGI 60 MKKINKQALID VEQKQLK YVPEF AGDEVNVAIKL+EKEKVR+QNFTGTVLRRRG+GI Sbjct: 1 MKKINKQALIDAVEQKQLKEYVPEFGAGDEVNVAIKLREKEKVRVQNFTGTVLRRRGRGI 60 Query: 61 SETFIVRKTTDGIPIEKNFQIHNPNISIELKRRGKVRRAYISYMRERSGKAAKIKERK 118 SETF+VRKTTDGIPIEKNFQIHNPNI IE+KRRGKVRRAYISYMRERSGK+AKIKE+K Sbjct: 61 SETFMVRKTTDGIPIEKNFQIHNPNIDIEVKRRGKVRRAYISYMRERSGKSAKIKEKK 118 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508398|ref|NP_110348.1| tRNA (guanine-N1)-methyltransferase [Mycoplasma pneumoniae M129] (210 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073115.1| tRNA (guanine-N1)-methyltransferase (trmD) [Myc... 344 3e-097 >ref|NP_073115.1| tRNA (guanine-N1)-methyltransferase (trmD) [Mycoplasma genitalium G-37] Length = 231 Score = 344 bits (883), Expect = 3e-097, Method: Compositional matrix adjust. Identities = 161/210 (76%), Positives = 185/210 (88%) Query: 1 MAQAQKAKLVEFEVINWRQYCKDKHQTVDDMAYGGGGGMVLKAEPILKALKACRTPQSKV 60 M QAQKA LV+FEV+NWR +C DKH+TVDDMAYGGG GMVLKAEPI+ L + P S V Sbjct: 22 MLQAQKANLVQFEVVNWRNFCNDKHKTVDDMAYGGGSGMVLKAEPIINCLNFYKAPNSHV 81 Query: 61 VLLSPEGQQFSQPMAQALTQTEHLILICGHYEGFDYRLYKHVDQIISLGDFVLSGGELVA 120 VLLSPEG+QFSQ A+ LT+ EHLIL+ GHYEGFD R+YK++DQI+SLGDFVLSGGELVA Sbjct: 82 VLLSPEGEQFSQNCAKKLTKYEHLILLSGHYEGFDQRIYKYIDQIVSLGDFVLSGGELVA 141 Query: 121 LSVIDATVRLIKGVINDQSLIHESFNNYLLDFPAYTRPYDLDGDKVPEILLSGDHKKIEA 180 LSVIDATVRLIKGVINDQSLI ESFN+ LLDFP YTRPYDL GDKVPE+LLSGDH+KIE+ Sbjct: 142 LSVIDATVRLIKGVINDQSLICESFNDNLLDFPVYTRPYDLKGDKVPEVLLSGDHQKIES 201 Query: 181 YRKEQQLLRTAQYRPDLYKQYLAKKDEKNK 210 +RKEQQ+L+TA+YRPDLYK+YL K+EKNK Sbjct: 202 FRKEQQILKTAKYRPDLYKKYLENKNEKNK 231 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508399|ref|NP_110349.1| ribosomal protein S16 [Mycoplasma pneumoniae M129] (88 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073116.1| ribosomal protein S16 (rps16) [Mycoplasma genit... 156 3e-041 >ref|NP_073116.1| ribosomal protein S16 (rps16) [Mycoplasma genitalium G-37] Length = 89 Score = 156 bits (395), Expect = 3e-041, Method: Compositional matrix adjust. Identities = 72/82 (87%), Positives = 78/82 (95%) Query: 1 MRMGRVHYPTYRIVAVDSRVKRDGKYIALIGHLNPALKENKCKIDEAVALEWLNKGAKPT 60 MRMGRVHYP YRIVAVDSRVKR+GKYIALIGHLNPALKENKCK+DE VAL+WLNKGA PT Sbjct: 1 MRMGRVHYPLYRIVAVDSRVKRNGKYIALIGHLNPALKENKCKLDETVALDWLNKGAIPT 60 Query: 61 DTVRSLFSQTGLWKKFVESKKK 82 DTVRSLFS++GLWKKF+ESK K Sbjct: 61 DTVRSLFSESGLWKKFIESKNK 82 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508400|ref|NP_110350.1| hypothetical protein MPN661 [Mycoplasma pneumoniae M129] (549 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073117.1| hypothetical protein MG447 [Mycoplasma genitali... 743 0.0 >ref|NP_073117.1| hypothetical protein MG447 [Mycoplasma genitalium G-37] Length = 547 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/549 (65%), Positives = 440/549 (80%), Gaps = 2/549 (0%) Query: 1 MDSQQDRLAKQVLIQKSFESKRLFLTILRFAIPTFFFALFSAAYVFVDQIMVIKFVPHGP 60 M+S++DR KQ+LI+ FESK+LFLTILRF +PTFFFALFSAAYVF+DQIMVIKFVP Sbjct: 1 MNSKRDRFEKQLLIKNVFESKQLFLTILRFTVPTFFFALFSAAYVFIDQIMVIKFVPRSE 60 Query: 61 LNPDSIFTDQALIEEFKASAFYKGGDIPNHTELTASQLVKTVLNISQPIVVILNAITIFV 120 LNPDSIFTDQ+LI+EFK SAFYK + + L Q +KTVLNISQP++V+LNAI IF+ Sbjct: 61 LNPDSIFTDQSLIDEFKNSAFYKSDSFLS-SGLNIKQFIKTVLNISQPLIVLLNAINIFI 119 Query: 121 PLGTGVIFSKTIGKGDEKKIKDAWNTGLVSTTLFALVTQIIVLAIAKEWLQFNLDKVDEQ 180 PLGTGVIFSK IG+ D+ KI++AWNTGL+STT+F L+TQ +VL+ AKEWL +NLD+ + Sbjct: 120 PLGTGVIFSKAIGRNDQNKIQEAWNTGLISTTVFGLITQFLVLSFAKEWLHYNLDQSSFE 179 Query: 181 HHVQVADQFQHFFNEKAVAIGSEYVYILIGFNIIPMLSRLFFYLGQSEGRQLFIAIXXXX 240 + Q A+ FQ FFN+KA+ + SEYVYILIG NIIPMLSRLFFYL QSEGRQLFIAI Sbjct: 180 QNFQ-ANSFQQFFNKKAIDVASEYVYILIGLNIIPMLSRLFFYLAQSEGRQLFIAIVPPI 238 Query: 241 XXXXXXXXXXXXXRFSTLGVVGSAVAAILVYFITFMAYVVYLISLNKRGLTYLSLRDFSF 300 R+S+LGV+GSAVA IL Y I F+AY++YLI LNKR LTYL+ + Sbjct: 239 ANLINILIVFLLVRYSSLGVIGSAVAGILGYLINFLAYIIYLIYLNKRNLTYLTFKTIKL 298 Query: 301 KRVSFNLFLVISMVGLASFFRNGSLSILNTFYESFLVNLTKTLTDQSDTFYLVLLTGPIA 360 ++ FNL +V+S++G+ASFFRNGSLSI+ TFYESFLVNLTK TD++D FYL LLTGPIA Sbjct: 299 NKIDFNLLVVVSLIGMASFFRNGSLSIVTTFYESFLVNLTKATTDKNDVFYLTLLTGPIA 358 Query: 361 IANLTSAAIFGVLQGVRTVVSYKFGQGQLADIKRINVYTLLVCLVFAALLYLILAVGLGK 420 I+NL SAAIFG+LQGVRTV SYKFGQ + +IK+IN+YT+++C+ F +L+YL+ AV GK Sbjct: 359 ISNLASAAIFGLLQGVRTVSSYKFGQKKYDEIKKINIYTVIICISFGSLIYLLTAVAFGK 418 Query: 421 EILVHLFDTSAATLMLANQFSLIVQAQVFFVAIGATSQQYFQNNNRVLYSWIVSLMQGVI 480 +IL FD S L LAN FSLIVQAQVFFVA GA SQQYFQN NRVLYSWIVSL G+ Sbjct: 419 QILSSFFDVSDQNLDLANYFSLIVQAQVFFVATGANSQQYFQNTNRVLYSWIVSLTHGLF 478 Query: 481 VFVPLLFIFQAITLQTKNIEIFIWLLTANAALAGLINVLIGQVHIHFFMDKYFAQKHKSR 540 VF+PLLFIFQAITLQT NIE+FIWLLTANAALAGLIN+ GQ+H + FMDKYFA +++ Sbjct: 479 VFIPLLFIFQAITLQTNNIEVFIWLLTANAALAGLINIAFGQIHTNLFMDKYFANPPQNK 538 Query: 541 IVQFIERYS 549 +V+FIE+YS Sbjct: 539 LVKFIEKYS 547 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508401|ref|NP_110351.1| hypothetical protein MPN662 [Mycoplasma pneumoniae M129] (151 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073118.1| hypothetical protein MG448 [Mycoplasma genitali... 273 5e-076 >ref|NP_073118.1| hypothetical protein MG448 [Mycoplasma genitalium G-37] Length = 150 Score = 273 bits (699), Expect = 5e-076, Method: Compositional matrix adjust. Identities = 127/148 (85%), Positives = 137/148 (92%) Query: 1 MSKYQKKSDGELKRTLTKLQYDVTQNAHTEPPYTNEYNRHYEKGIYVDITSGEPLFISTD 60 MSKYQKKS+ ELKRTLTKLQ+DVTQNAHTEPPY NEYNR++EKGIYVDITSGEPLFISTD Sbjct: 1 MSKYQKKSEAELKRTLTKLQFDVTQNAHTEPPYINEYNRNFEKGIYVDITSGEPLFISTD 60 Query: 61 KFKSGCGWPAFTKPISQDLIANYRDESHGMIRTEVRAKNSNSHLGHVFRDGPEEHGGLRY 120 KFKSGCGWPAF+KPI ++LIANYRDESHGMIRTEVRAKNS+SHLGHVF DGP E GGLRY Sbjct: 61 KFKSGCGWPAFSKPIDKNLIANYRDESHGMIRTEVRAKNSDSHLGHVFNDGPSELGGLRY 120 Query: 121 CINSAALKFIPFAEMESAGYGEYLKLFK 148 CINSAALKFIPF EME GY +Y+ LFK Sbjct: 121 CINSAALKFIPFEEMEKLGYKDYIHLFK 148 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508402|ref|NP_110352.1| hypothetical protein MPN663 [Mycoplasma pneumoniae M129] (234 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073119.1| hypothetical protein MG449 [Mycoplasma genitali... 218 4e-059 >ref|NP_073119.1| hypothetical protein MG449 [Mycoplasma genitalium G-37] Length = 144 Score = 218 bits (555), Expect = 4e-059, Method: Compositional matrix adjust. Identities = 108/143 (75%), Positives = 123/143 (86%), Gaps = 2/143 (1%) Query: 89 VKKISELLNYDLTPLAKKVPFVVCEVISAIPIPNTHLKRCKVNTGSNKSLDVVCGADNVR 148 +K+ISELL YDL LA KVPFVVCEV+S IPI NTHLKRCKVNTG KSLD+VCGA+NVR Sbjct: 1 MKRISELLGYDLISLANKVPFVVCEVVSVIPIANTHLKRCKVNTGLTKSLDIVCGANNVR 60 Query: 149 VGLKTVLVHVGGVLPDGTIIKKAKIAGYDSMGMLCSEKELNLKPKNQGIIEIKSHIKIGK 208 VG+KTVLV VGGVLP GT+IKK KIAG+DS+GMLCSEKELNLK KN+GIIEI IK+GK Sbjct: 61 VGMKTVLVQVGGVLPSGTVIKKTKIAGFDSVGMLCSEKELNLKQKNEGIIEINPKIKVGK 120 Query: 209 SFLDVYLNNSEKFSAWVSTKKRV 231 F+DVYLN ++ S WV+TKKRV Sbjct: 121 PFIDVYLN--KQHSKWVNTKKRV 141 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508403|ref|NP_110353.1| hypothetical protein MPN664 [Mycoplasma pneumoniae M129] (237 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073120.1| hypothetical protein MG450 [Mycoplasma genitali... 330 6e-093 ref|NP_072995.1| hypothetical protein MG326 [Mycoplasma genitali... 59 6e-011 >ref|NP_073120.1| hypothetical protein MG450 [Mycoplasma genitalium G-37] Length = 237 Score = 330 bits (847), Expect = 6e-093, Method: Compositional matrix adjust. Identities = 158/237 (66%), Positives = 189/237 (79%) Query: 1 MANAPKGVKFSTSQTTEEIVRAKVSELVEQYDLIIGIPIDKEISASYANWKLVEKDYASK 60 M NAPKGVKFSTSQT+EE VR KV ++ YDLIIGIPIDKEIS SY NWK+VEK++ K Sbjct: 1 MINAPKGVKFSTSQTSEEEVRDKVKSIINDYDLIIGIPIDKEISTSYLNWKIVEKEFEDK 60 Query: 61 FHVLDARAVEMIIDWLINDIKGWLNTNPYSREGLDRFVEQYRKKTAAVLFVTDTKPLVAG 120 FHVLD+R VE++I WLI+DIK WL N YSR GLD FV +R K A+LFVTDTKPLVAG Sbjct: 61 FHVLDSRIVEVLIAWLISDIKVWLKNNQYSRAGLDEFVYNFRNKCGAILFVTDTKPLVAG 120 Query: 121 GRLSNLKSFIIKSLKFHLLISFLGENGKLQFFDKARSAHDAHKLAVKFLKKQLLKHSAKL 180 GRLSNLKSFIIKS KFHLLISFLGE GKLQFF+KA+SA AHKLAV+FL+K+LLK Sbjct: 121 GRLSNLKSFIIKSFKFHLLISFLGETGKLQFFNKAQSASSAHKLAVQFLEKKLLKKEVNF 180 Query: 181 KRGAFLTTVFDEQTNTNLVQEFDKLLDHSINIEQSLLSPVICTHTGLNSYVIVLQGE 237 +R A LTT+F+ N + QEF LL++++++ + LLSPVICTHTG+NSY ++Q E Sbjct: 181 RRAALLTTMFETDKNQLIKQEFVTLLNNAVDVSEHLLSPVICTHTGINSYAFLIQTE 237 >ref|NP_072995.1| hypothetical protein MG326 [Mycoplasma genitalium G-37] Length = 295 Score = 58.5 bits (140), Expect = 6e-011, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 112/242 (46%), Gaps = 19/242 (7%) Query: 5 PKGVKFSTSQTTEEIVRAKVSELVEQYDLIIGIPIDKEISASYANW-----KLVEKDYAS 59 P G+ STS + + E+ +YD I +P+ K +S +Y +L E++ Sbjct: 56 PHGLNISTSLPRQSDLLKIFEEIKTKYDRFIFLPLSKGLSGTYDMLVQLAKELSEQNKDK 115 Query: 60 KFHVLDARAVEMIIDWLINDIKGWLNTNPYSREGLDRFVEQYRKKTAAVLFVTDTKPLVA 119 +F V + + + + WL+ DIK ++ + + VE +++ + + + + + Sbjct: 116 EFLVFETSDIAISLKWLVEDIKALVDKG-CDNQTIKAKVESHKQNILSAVTLKNLVQMRK 174 Query: 120 GGRLSNLKSFIIKSLKFHLLISFLGENGKLQFFDKARSAHDAHKLAVKFLKKQLLKHSAK 179 GGR+S LK FI L+ +I F + G K S A + F+K + + K Sbjct: 175 GGRISGLKKFITTLLRVKPIILF--DKGVNTLGAKVFSFSQAVEKIFGFVKTK-FGDNYK 231 Query: 180 LKRGAFLTTVFDEQTN--TNLVQEFDKLLDHS-IN----IEQSLLSPVICTHTGLNSYVI 232 +KR F + N ++ +F ++H+ IN IE + ++ VI HTG++++ I Sbjct: 232 IKRIGFCYSFCKNYANEIKKIITDF---IEHNKINFQNEIENAFITSVIIVHTGIDAFSI 288 Query: 233 VL 234 L Sbjct: 289 SL 290 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508404|ref|NP_110354.1| elongation factor TU [Mycoplasma pneumoniae M129] (394 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplasma genitali... 752 0.0 ref|NP_072751.1| elongation factor G (fus) [Mycoplasma genitaliu... 66 5e-013 ref|NP_072800.1| GTP-binding membrane protein (lepA) [Mycoplasma... 64 2e-012 >ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplasma genitalium G-37] Length = 394 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/394 (92%), Positives = 375/394 (95%) Query: 1 MAREKFDRSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDQIDKAPEEKARG 60 MAREKFDRSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYD+IDKAPEEKARG Sbjct: 1 MAREKFDRSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDEIDKAPEEKARG 60 Query: 61 ITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHI 120 ITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHI Sbjct: 61 ITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHI 120 Query: 121 LLARQVGVPRMVVFLNKCDIATDEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALE 180 LLARQVGVP+MVVFLNKCDIA+DEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALE Sbjct: 121 LLARQVGVPKMVVFLNKCDIASDEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALE 180 Query: 181 GDPKWEAKIHDLMNAVDEWIPTPEREVDKPFLLAIEDTMTIXXXXXXXXXXXXXXXLKVG 240 GDPKWEAKIHDL+ AVDEWIPTP REVDKPFLLAIEDTMTI LKVG Sbjct: 181 GDPKWEAKIHDLIKAVDEWIPTPTREVDKPFLLAIEDTMTITGRGTVVTGRVERGELKVG 240 Query: 241 QEIEIVGLRPIRKAVVTGIEMFKKELDSAMAGDNAGVLLRGVDRKEVERGQVLAKPGSIK 300 QE+EIVGL+PIRKAVVTGIEMFKKELDSAMAGDNAGVLLRGV+RKEVERGQVLAKPGSIK Sbjct: 241 QEVEIVGLKPIRKAVVTGIEMFKKELDSAMAGDNAGVLLRGVERKEVERGQVLAKPGSIK 300 Query: 301 PHKKFKAEIYALKKEEGGRHTGFLNGYRPQFYFRTTDVTGSISLPENTEMVLPGDNTSIT 360 PHKKFKAEIYALKKEEGGRHTGFLNGYRPQFYFRTTDVTGSI+L ENTEMVLPGDN SIT Sbjct: 301 PHKKFKAEIYALKKEEGGRHTGFLNGYRPQFYFRTTDVTGSIALAENTEMVLPGDNASIT 360 Query: 361 VELIAPIACEKGSKFSIREGGRTVGAGSVTEVLE 394 VELIAPIACEKGSKFSIREGGRTVGAG+VTEVLE Sbjct: 361 VELIAPIACEKGSKFSIREGGRTVGAGTVTEVLE 394 >ref|NP_072751.1| elongation factor G (fus) [Mycoplasma genitalium G-37] Length = 688 Score = 66.2 bits (160), Expect = 5e-013, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 61/128 (47%), Gaps = 3/128 (2%) Query: 14 NVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDQ--IDKAPEEKARGITINSAHVEYS 71 N G + HID GKTT + I + K T + +D +EK RGITI SA S Sbjct: 12 NFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERGITITSAATSVS 71 Query: 72 SDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHILLARQVGVPRM 131 +D PGH D+ + +DGAI V+ A V PQT A + VPR Sbjct: 72 WKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQASRYEVPR- 130 Query: 132 VVFLNKCD 139 V+F+NK D Sbjct: 131 VIFVNKMD 138 >ref|NP_072800.1| GTP-binding membrane protein (lepA) [Mycoplasma genitalium G-37] Length = 598 Score = 64.3 bits (155), Expect = 2e-012, Method: Compositional matrix adjust. Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 24/266 (9%) Query: 14 NVGTIGHIDHGKTTLTAAICT-VLAKEGKSAATRYDQIDKAPEEKARGITI--NSAHVEY 70 N I HIDHGK+TL+ + L E + + +D E+ RGITI N+ ++ Sbjct: 8 NFSIIAHIDHGKSTLSDRLLEHSLGFEKRLLQAQ--MLDTMEIERERGITIKLNAVELKI 65 Query: 71 SSDKRHYAH--VDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHILLARQVGV 128 + D +Y +D PGH D+ + A +G +L+V AT + QT + LA + + Sbjct: 66 NVDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNAYLALENNL 125 Query: 129 PRMVVFLNKCDIATDEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALEGDPKWEAK 188 ++ +NK D+ D E + + +LL G + + ++ A Sbjct: 126 -EIIPVINKIDM--DNADIETTKDSLHNLL---GVEKNSICLVSAKA----------NLG 169 Query: 189 IHDLMNAVDEWIPTPEREVDKPFLLAIEDTMTIXXXXXXXXXXXXXXXLKVGQEIEIVGL 248 I L+ + IP P+ E+++P + D+ LKV ++ + Sbjct: 170 IDQLIQTIIAKIPPPKGEINRPLKALLFDSYYDPYKGVVCFIRVFDGCLKVNDKVRFIKS 229 Query: 249 RPIRKAVVTGIEM-FKKELDSAMAGD 273 + + V G++ F ++ D AGD Sbjct: 230 NSVYQIVELGVKTPFFEKRDQLQAGD 255 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508405|ref|NP_110355.1| hypothetical protein MPN666 [Mycoplasma pneumoniae M129] (251 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073122.1| hypothetical protein MG452 [Mycoplasma genitali... 276 2e-076 >ref|NP_073122.1| hypothetical protein MG452 [Mycoplasma genitalium G-37] Length = 261 Score = 276 bits (706), Expect = 2e-076, Method: Compositional matrix adjust. Identities = 142/244 (58%), Positives = 179/244 (73%), Gaps = 3/244 (1%) Query: 1 MEQNNCKIRTWFAKLALAQKVFLGVIPLFFICFVFVIADIVISLQNKGHIIEEIDKFTNQ 60 ++ NNC+I W+ +L+L QK FL IPLF + FV+ IV SL G IIE+IDKFT+Q Sbjct: 11 VKTNNCQIIGWWKQLSLPQKTFLSFIPLFLVTSAFVLTGIVESLLTFGTIIEQIDKFTDQ 70 Query: 61 SNVMLLIYACWYVSKPKSHYLKNQQFFLSAFAYIIFTFLGYNVILAASQQAYSDKDAYSL 120 +NVMLLIYA Y PKS LKNQQFFLSA AYI+FTF+GYN+IL+ + AY + Y L Sbjct: 71 TNVMLLIYAVIYTFNPKSWLLKNQQFFLSALAYILFTFIGYNLILSIAGIAYKSTNPYKL 130 Query: 121 ASSVFLHVLAPIAFLVAGIVKMKTDKDVTFNHFWKSLGYFMIYPLVYGLYLATIPYVRGH 180 SS+FLHV+APIAF +A +K+K +KDV N F+KSL FMIYPL+YGLYL TIPYVR H Sbjct: 131 TSSIFLHVIAPIAFFIASFIKIKHEKDVNINMFFKSLLLFMIYPLIYGLYLVTIPYVR-H 189 Query: 181 YVSDDGKSTTYVVYGEITNTKDNPIVAWPVVICFLFIYFPLSFLAVYALQCKLLNRPLKA 240 Y+ +G+ +TY +YG ITNTK+NP AW VV LFIYFPLS+LA+Y LQ KL+ + ++ Sbjct: 190 YLF-NGRPSTYTIYGSITNTKNNPF-AWLVVFAVLFIYFPLSYLAIYLLQLKLIKKAIQP 247 Query: 241 QFKC 244 QF Sbjct: 248 QFNL 251 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508406|ref|NP_110356.1| UDP-glucose pyrophosphorylase [Mycoplasma pneumoniae M129] (291 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073123.1| UTP--glucose-1-phosphate uridylyltransferase (g... 436 e-124 >ref|NP_073123.1| UTP--glucose-1-phosphate uridylyltransferase (gtaB) [Mycoplasma genitalium G-37] Length = 292 Score = 436 bits (1121), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/285 (74%), Positives = 248/285 (87%), Gaps = 1/285 (0%) Query: 3 KIRKAVIPAAGLGTRLLPATKAIPKEMLPLVNKPTIQYIVEEAVASGIKEILVIVSSKKE 62 KIRKAVIPAAGLG RLLPATKAIPKEMLPLVNKPTIQYIVEEAV SGI++ILVIVSSKK Sbjct: 4 KIRKAVIPAAGLGVRLLPATKAIPKEMLPLVNKPTIQYIVEEAVKSGIEQILVIVSSKKT 63 Query: 63 AIIDHFDYDFILENALLQKHKDQEHQEIKDIANLAHIYFVRQKHQHGLGDAILHAKSFVG 122 AI+DHFDYD ILENAL+QK+K QEH+EI+DIANLAHI+FVRQK+Q GLGDAIL A+SFVG Sbjct: 64 AILDHFDYDLILENALIQKNKLQEHKEIEDIANLAHIFFVRQKNQDGLGDAILFAESFVG 123 Query: 123 NEDFAVLLGDDVVFGEQPALAQCIQAYEQTDCQVIGVQEVPHDQVNKYGIVTPEANWQKQ 182 NEDFAVLLGDDVVF ++PAL QC++AY +T+CQ IGVQEV V+KYGI+TPE +++ + Sbjct: 124 NEDFAVLLGDDVVFSKEPALKQCLEAYYETNCQTIGVQEVDPCHVDKYGIITPEGDYKNK 183 Query: 183 ALVKILGMVEKPAVNEAKSNLAILSRYILKPSIFTALKQVPFGVGGELQLTDGLNYCLQQ 242 L+K+L M EKP +AKSNLAIL RY+LKPSIF AL+ VP+GVGGELQLTDGLN+CL+ Sbjct: 184 DLIKVLAMTEKPKPKDAKSNLAILGRYVLKPSIFKALRSVPYGVGGELQLTDGLNFCLKN 243 Query: 243 GEPFFAKHFGGTRFDVGTKNGFIKANLYTALKTDAITKDEVLAIL 287 E F+A+ F GTRFDVGTK+GFIKANL+TAL I+K EVL +L Sbjct: 244 -ENFYARKFTGTRFDVGTKSGFIKANLFTALNNKDISKKEVLELL 287 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508407|ref|NP_110357.1| hypothetical protein MPN668 [Mycoplasma pneumoniae M129] (140 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073124.1| hypothetical protein MG454 [Mycoplasma genitali... 170 6e-045 >ref|NP_073124.1| hypothetical protein MG454 [Mycoplasma genitalium G-37] Length = 155 Score = 170 bits (430), Expect = 6e-045, Method: Compositional matrix adjust. Identities = 80/140 (57%), Positives = 92/140 (65%) Query: 1 MAVIYKTTAHASAGREGVVQTVDGFTVSLAFPKPGATHQDKNNPEQLFASAYAGCFSXXX 60 MA+IYKT A GREG V+T+DGF L+FPKP + Q +NNPEQLFASAYA CFS Sbjct: 16 MALIYKTVAQTETGREGSVKTLDGFQTKLSFPKPDLSVQTENNPEQLFASAYASCFSQAV 75 Query: 61 XXXXXXXXXXXXXXPIVGVSVELHDQDGLFHIKAGVELAITGVDQTTAQTVITAAHAMCP 120 P+V V VELH ++GLFHIKAGVEL DQ + +I AH MCP Sbjct: 76 IVVMQQHQFSFSKKPVVSVKVELHQENGLFHIKAGVELTTNSNDQEVGKKLIQKAHEMCP 135 Query: 121 FSRLIKPENFLGLTLNGAKL 140 FSRLI+ ENFLGLTLNG KL Sbjct: 136 FSRLIRNENFLGLTLNGIKL 155 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508408|ref|NP_110358.1| tyrosyl tRNA synthetase [Mycoplasma pneumoniae M129] (399 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073125.1| tyrosyl-tRNA synthetase (tyrS) [Mycoplasma geni... 508 e-146 >ref|NP_073125.1| tyrosyl-tRNA synthetase (tyrS) [Mycoplasma genitalium G-37] Length = 407 Score = 508 bits (1308), Expect = e-146, Method: Compositional matrix adjust. Identities = 240/395 (60%), Positives = 300/395 (75%), Gaps = 1/395 (0%) Query: 1 MTKDLLALLKERGLFVQANFEKELKQLLNQGSFAFYVGFDPTAPSLHIGNYVLLHVAQIF 60 M ++L LKER L+ QANFE EL L + FYVGFDPTA SLHIGNYVL+H+A++ Sbjct: 12 MLNNILQFLKERELYSQANFETELDNHLKEKKNNFYVGFDPTANSLHIGNYVLIHIAKLL 71 Query: 61 QAMGHIPHVLLGSGTALIGDPTGRMELRQMMSRETIAENTRNIKKQIRRFLGSNVVFCQN 120 + MGH PH++LGS TALIGDPTGR+ELR+++ + I +NT+ IKKQI++FLG +V+ +N Sbjct: 72 KDMGHTPHIVLGSATALIGDPTGRIELRKILEEKEIVKNTKTIKKQIKQFLG-DVIIHEN 130 Query: 121 ETWLKKLNYIEVIRELGPCFSVNKMLATDAFSARWERGLTLMELNYMVLQAYDFYYLNQK 180 + WL+KLNYIEVIRELG FSVNKML+TDAFSARWE+GLTLMELNYM+LQAYDFYYL++ Sbjct: 131 KVWLEKLNYIEVIRELGAFFSVNKMLSTDAFSARWEKGLTLMELNYMILQAYDFYYLHKN 190 Query: 181 YGVQLQIGGSDQWANILAGADLIRRKTQKQVYGMTTNLLVKANGEKMGKSASGALWLDPQ 240 + V LQIGGSDQWANILAGA+LI+RK V+G+T NLLVKANGEKMGK++SGALWLD Sbjct: 191 HNVTLQIGGSDQWANILAGANLIKRKNNASVFGLTANLLVKANGEKMGKTSSGALWLDEN 250 Query: 241 KTSPYDFYQYWINLDDASLQKVFLMLTKLDTKAIETLCNLKGAAIKEAKAKLAFELTDAI 300 KTS +DFYQYWINLDD SL+K FLMLT LD K I+ LCNLKG IK+ K LAF +T+ I Sbjct: 251 KTSVFDFYQYWINLDDQSLKKTFLMLTMLDKKVIDELCNLKGPKIKQTKQMLAFLITELI 310 Query: 301 HGTKAALVAQAKSARIFAFQPDTETKTVRAGTRXXXXXXXXXXXXSRSEARRVIQQGGLT 360 HGTK A AQ +S IF+ QPD + K V+ T S+SEARR+I Q GLT Sbjct: 311 HGTKKAKEAQQRSELIFSNQPDLDIKLVKTSTNLIDYLVETKFIKSKSEARRLISQKGLT 370 Query: 361 INQEKVTDVEMVLQASSQPLVIGKGKKRFVTVQVI 395 IN + V D+ +++ + +I KGKK F+T++ + Sbjct: 371 INNKHVLDLNQIIEWKEELQIIRKGKKSFLTIKTV 405 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508409|ref|NP_110359.1| hypothetical protein MPN670 [Mycoplasma pneumoniae M129] (345 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073126.1| hypothetical protein MG456 [Mycoplasma genitali... 320 1e-089 >ref|NP_073126.1| hypothetical protein MG456 [Mycoplasma genitalium G-37] Length = 334 Score = 320 bits (820), Expect = 1e-089, Method: Compositional matrix adjust. Identities = 159/308 (51%), Positives = 214/308 (69%), Gaps = 4/308 (1%) Query: 1 MPELTRFQKFFLTPEKFNKFTRVVGFCGVFALIALSLGIYSYVGQGSIVPKVAALFLIAL 60 M +LT+F KFFLTP K N F RV+G CG+F++IA+S GIYSY +P +A+LFLI L Sbjct: 1 MSDLTKFNKFFLTPNKLNAFLRVIGLCGLFSVIAISFGIYSYTRNE--IPNIASLFLIVL 58 Query: 61 GGFTLLLSFVINFVALYKRSQLIHLVNRQDRTDLWLQKMANNKQFEQFELFEKGPISADI 120 G L L+FVI+F AL+KR++L+ VN+++RT+LW ++M N K E FE FE+GPIS+DI Sbjct: 59 GSVVLFLAFVIHFAALFKRNKLLKKVNKENRTNLWQKEMGNFKAIESFEFFEQGPISSDI 118 Query: 121 LPTFYPATIYNFELVPKQFKVQYKNGQTLNFAKLSAIKRSTSKNEKVACLVAIIDAV-SD 179 LP+FYP +YNFE +P+QFKV YK+G F + AIKRS++K EKVACL+AI A+ S+ Sbjct: 119 LPSFYPTALYNFEPLPRQFKVTYKDGSEFVFGHIYAIKRSSNKTEKVACLIAITPAINSE 178 Query: 180 QHWFLTKSDFPL-INTGFYESLTESNRQNNVLLYTEKDASFNFNQLDKEMIKQVLXXXXX 238 H+FLT +++ L N +E+LTE+ +Q N+ L+ EKD++F+F LD E++ +VL Sbjct: 179 NHFFLTDANYSLNKNVAQFEALTENKKQENISLFVEKDSNFSFQNLDTEVLNKVLFNPLN 238 Query: 239 XXXXXXXXXXTTHTYLMMSVPITFMDTSLRMEEAVGDLELNITRQAGYDAATLDSFHKVV 298 T HTYL MSVP TFMDT L++ EA DL NI QA YD TL+S KVV Sbjct: 239 VYAKFNVYNDTVHTYLFMSVPTTFMDTKLKVNEAFDDLVTNIKLQASYDFKTLNSMQKVV 298 Query: 299 ELLKTKLI 306 +LL KLI Sbjct: 299 DLLHNKLI 306 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508410|ref|NP_110360.1| cell division protein FtsH [Mycoplasma pneumoniae M129] (709 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073127.1| cell division protein (ftsH) [Mycoplasma genita... 1045 0.0 >ref|NP_073127.1| cell division protein (ftsH) [Mycoplasma genitalium G-37] Length = 702 Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/679 (77%), Positives = 563/679 (82%), Gaps = 10/679 (1%) Query: 2 KKNKGLNEATTSEKPQFPKRTAWKIFWWXXXXXXXXXXXXXXXMPRATTAVIEKWELSG- 60 K+NKGL E TT+EK F ++TAWK+FWW PRA TAV+E W+L+G Sbjct: 3 KRNKGLVEQTTTEKNNFSRKTAWKVFWWVIILAVVIGVLAYIFSPRAATAVVESWKLNGG 62 Query: 61 --TTLSAQIKGLSGKHTFQRINNSTYVTDDILQVSISFQGIN-PIVVTAHKATNGSGETI 117 +TL+A++ G S + TF++IN STYVTD ILQVSI+F G+N P+ VTAHK N +G I Sbjct: 63 SNSTLTAKVSGFSNELTFKQINGSTYVTDTILQVSITFDGLNSPLTVTAHKTVNSNGNVI 122 Query: 118 FNIANLSINQSTGKAIVN--GMMTQDQKSNNGTELASIKGLHDIGTFVAPDTRARDVXXX 175 FNIANLSINQS G+ VN G M SNN SI G +GTF+APDTRARDV Sbjct: 123 FNIANLSINQSNGQITVNSNGTMMNGGSSNN---TKSIAGFETLGTFIAPDTRARDVLNG 179 Query: 176 XXXXXXXXXXXXXXXXXWXXXXXXXXXXXXEEDNIFSIGKTQAKLAKSSVRFDNIAGLQE 235 W EEDNIFSIGKTQAKLAKS+V+F NIAGLQE Sbjct: 180 LFGLLPIIIFVVFFLLFWRSARGISAGGR-EEDNIFSIGKTQAKLAKSTVKFTNIAGLQE 238 Query: 236 EKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGS 295 EKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGS Sbjct: 239 EKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGS 298 Query: 296 GFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLL 355 GFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLL Sbjct: 299 GFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLL 358 Query: 356 AEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKN 415 AEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGIL+VHA+NKN Sbjct: 359 AEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAENKN 418 Query: 416 LSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMNDIDEAIDRVIAGPAKK 475 LSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTIN+NDIDEAIDRVIAGPAKK Sbjct: 419 LSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTININDIDEAIDRVIAGPAKK 478 Query: 476 SRVVSDADRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKR 535 SRV+SD DRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKR Sbjct: 479 SRVISDEDRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKR 538 Query: 536 KSDLLAMIATAMGGRAAEEEIYGPLEITTGASSDFYKATNIARAMVTQLGMSKLGQVQYV 595 KSDLLAMIATAMGGRAAEEEIYG LEITTGASSDFYKATNIARAMVTQLGMSKLGQVQYV Sbjct: 539 KSDLLAMIATAMGGRAAEEEIYGNLEITTGASSDFYKATNIARAMVTQLGMSKLGQVQYV 598 Query: 596 PSQGTVPPGTKLFSEQTAKDIDFEINAIIEEQYKKARTIIKTNRKXXXXXXXXXXXXXXX 655 PSQGT+P KL+SEQTAKDID EIN IIEEQYKKA+TIIK+NRK Sbjct: 599 PSQGTLPSNVKLYSEQTAKDIDNEINFIIEEQYKKAKTIIKSNRKELELLVEALLIAETI 658 Query: 656 XKSDIDYIHEHTKLPPEIL 674 KSDID+IH++TKLPPEIL Sbjct: 659 LKSDIDFIHKNTKLPPEIL 677 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508411|ref|NP_110361.1| hypoxanthine-guanine phosphoribosyltransferase [Mycoplasma pneumoniae M129] (175 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073128.1| hypoxanthine-guanine phosphoribosyltransferase ... 271 4e-075 >ref|NP_073128.1| hypoxanthine-guanine phosphoribosyltransferase (hpt) [Mycoplasma genitalium G-37] Length = 175 Score = 271 bits (692), Expect = 4e-075, Method: Compositional matrix adjust. Identities = 127/174 (72%), Positives = 151/174 (86%) Query: 1 MGIKSIIIDQKQVEAGCNAALKWCNEHFAGKQVIVLGILKGCIPFLGKLISQFTFDLQLD 60 MGIKSI+I+++Q+E GC A+ WCN F K+VIVLGILKGCIPFLGK+IS+F+FDLQLD Sbjct: 1 MGIKSIVINEQQIEEGCQKAVNWCNAKFNNKKVIVLGILKGCIPFLGKVISKFSFDLQLD 60 Query: 61 FVAVASYHGGSRQQEAPKIVLDMSHDPKGKDILLIEDIVDSGRSIKLVLDLLHTRKAKSV 120 F+AVASYHG Q++ PKIVLDMSHDPK KDILLIEDIVDSGRSIKLV+DLL TR AKS+ Sbjct: 61 FMAVASYHGSHVQKQPPKIVLDMSHDPKDKDILLIEDIVDSGRSIKLVIDLLKTRHAKSI 120 Query: 121 ILVSFIEKLKPREADIKVDYSCFKNQDEFLVGFGLDYQGFYRNLPYVGVFDPED 174 L+S IEK+KP+ DI +D+SCFK +D FLVGFGLDY GFYRNLPYVGVF+P++ Sbjct: 121 TLISLIEKIKPKAFDINIDFSCFKVKDNFLVGFGLDYDGFYRNLPYVGVFEPDN 174 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508412|ref|NP_110362.1| hypothetical protein MPN673 [Mycoplasma pneumoniae M129] (169 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073129.1| hypothetical protein MG459 [Mycoplasma genitali... 274 3e-076 >ref|NP_073129.1| hypothetical protein MG459 [Mycoplasma genitalium G-37] Length = 169 Score = 274 bits (701), Expect = 3e-076, Method: Compositional matrix adjust. Identities = 129/169 (76%), Positives = 147/169 (86%) Query: 1 MQFRVGLGKKKYRIKPRAEQKNKFWIGGVEIEDSKYIYDHDASDDASDVIQLAVADALFG 60 MQ RVGLG KKY IK R E KNKFW+GGV+ E+SKYIYD + SD+ SDVIQLAVADALFG Sbjct: 1 MQLRVGLGSKKYHIKLRKESKNKFWLGGVDFENSKYIYDLENSDEVSDVIQLAVADALFG 60 Query: 61 ATALGDGQIVFNKEKTQIPLKGNPRKEAPRILARTYNFIRKNWYINNIDITLEIPSQQKM 120 ATALGDG IVFNK K+ + KG +KEAPR+LARTYNFIRKNW INNIDI+LEIP +QK+ Sbjct: 61 ATALGDGHIVFNKGKSTVQFKGTAKKEAPRVLARTYNFIRKNWIINNIDISLEIPQEQKV 120 Query: 121 DDYKHAIFDFICTALRITELTINLKVREPLNPNEISCLAVVLVERQRLK 169 DDYKHAIF FIC+ALRI+ELTINLKVR+PL+ NEI+CLAVVLVERQ+ K Sbjct: 121 DDYKHAIFAFICSALRISELTINLKVRKPLDSNEINCLAVVLVERQKTK 169 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508413|ref|NP_110363.1| L-lactate dehydrogenase [Mycoplasma pneumoniae M129] (312 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073130.1| L-lactate dehydrogenase (ldh) [Mycoplasma genit... 517 e-149 >ref|NP_073130.1| L-lactate dehydrogenase (ldh) [Mycoplasma genitalium G-37] Length = 312 Score = 517 bits (1331), Expect = e-149, Method: Compositional matrix adjust. Identities = 250/312 (80%), Positives = 277/312 (88%) Query: 1 MKSLKVALIGSGAVGTSFLYAAMSRGLASEYMVIDINEKSQVGNVFDLQDAVPSSPQYSK 60 MK K+A++GSGAVGTSFLYAAM+R L SEYM+IDINEK++VGNVFDLQDA S P + K Sbjct: 1 MKGPKIAIVGSGAVGTSFLYAAMTRALGSEYMIIDINEKAKVGNVFDLQDASSSCPNFGK 60 Query: 61 VIAGDYKQLKDYDFIFIGAGRPQKQGGETRLQLLEGNVEIMKNIAKAVKESGFKGITLIA 120 V+AG+Y QLKDYDFIFI AGRPQKQGGETRLQLLEGNVEIMK+IAK +K+SGF G+TLIA Sbjct: 61 VVAGEYSQLKDYDFIFISAGRPQKQGGETRLQLLEGNVEIMKSIAKEIKKSGFNGVTLIA 120 Query: 121 SNPVDIMAYTYLKVTGFEPNKVIGSGTLLDSARLKFAIAEKYGMSSRDVQAYVLGEHGDX 180 SNPVDIM+YTYLKVTGFEPNKVIGSGTLLDSARL++AIA KY MSS+DVQAYV+GEHGD Sbjct: 121 SNPVDIMSYTYLKVTGFEPNKVIGSGTLLDSARLRYAIATKYQMSSKDVQAYVIGEHGDS 180 Query: 181 XXXXXXXAKIAGLPLKHFSKASDIEKEFAEIDHFIRRRAYEIIERKGATFYGIGEATAEV 240 AKIAGL LKHFSKASDIEKEF EID FIRRRAYEIIERKGATFYGIGEA+A+V Sbjct: 181 SVSIISSAKIAGLSLKHFSKASDIEKEFGEIDQFIRRRAYEIIERKGATFYGIGEASADV 240 Query: 241 AELILRDTKEVRVVASLINGQYGAKDVMFGTPCVLGRNGVEKILEIELSATEKAGLDKSI 300 AE IL+DTKEVRVVA L+ GQYGAKD+MFGTPCVL R G+EKILEIELS TEK L+ SI Sbjct: 241 AEQILKDTKEVRVVAPLLTGQYGAKDMMFGTPCVLSRKGIEKILEIELSNTEKVALENSI 300 Query: 301 QVLKDNIKLAKL 312 +VLKDNIKLAKL Sbjct: 301 KVLKDNIKLAKL 312 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508414|ref|NP_110364.1| hypothetical protein MPN675 [Mycoplasma pneumoniae M129] (101 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508415|ref|NP_110365.1| hypothetical protein MPN676 [Mycoplasma pneumoniae M129] (106 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508416|ref|NP_110366.1| similar to ATPases [Mycoplasma pneumoniae M129] (425 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073131.1| hypothetical protein MG461 [Mycoplasma genitali... 660 0.0 >ref|NP_073131.1| hypothetical protein MG461 [Mycoplasma genitalium G-37] Length = 425 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/424 (72%), Positives = 363/424 (85%) Query: 1 MQQIFFKDPILGEVLFDQQTKWMYELVETEAFRRLRNIKQLGINFHFYPGGVHTRYSHSL 60 MQQ FFKDPILGE++FD+ TKWMYELV T+AF+RLRNIKQLGINFHFYP GVHTRY+HSL Sbjct: 1 MQQTFFKDPILGEIIFDENTKWMYELVNTKAFQRLRNIKQLGINFHFYPSGVHTRYAHSL 60 Query: 61 GVYELLRRILNTPAFAPIDENKKQTVLVAGLLHDIGHAPHSHAFEIYFAKAPNFKKELFI 120 GVYEL+RRILN+ AF ID+ KKQTVLVAGLLHD+GH PHSHAFEIYFAK P+FKK+LFI Sbjct: 61 GVYELIRRILNSSAFLNIDQIKKQTVLVAGLLHDLGHGPHSHAFEIYFAKNPDFKKQLFI 120 Query: 121 HEEVTTLFVNSEPIKSILKANQIDPKLVAALIDENKELKPSNYWMRQLISSDLDADRMDY 180 HE+VT++ VNSEPI SILKAN+IDP L+ ALIDEN+ ++P N+WMRQLISSDLD DRMDY Sbjct: 121 HEKVTSMLVNSEPIVSILKANKIDPNLIGALIDENQNIQPINWWMRQLISSDLDTDRMDY 180 Query: 181 LLRDSYFTGTSHSLIDYQTIIKEMDCVKVKGIYEIFFKDKCLPLIENFLITRHHMYQSIY 240 LLRD+YFTGTSHSL+DYQ+II M+CV +G Y+I F++KCLP IENFLITRHHMYQSIY Sbjct: 181 LLRDAYFTGTSHSLVDYQSIINGMECVDNQGTYKIVFQEKCLPFIENFLITRHHMYQSIY 240 Query: 241 SDGRSISTELNLWFVFQRIKDLVDKNQFDFNGYKTLEQVCLPLLKNEHFDKKMLPAFVKL 300 SDGRSI+TELNLWFVFQRIK L++++ F+F+ +K +E V PLLKN+ F K +L FVKL Sbjct: 241 SDGRSIATELNLWFVFQRIKALIEEDNFNFHNFKNVESVIKPLLKNQLFKKSLLTCFVKL 300 Query: 301 DDYVFQSFFVNLYQTTXXXXXXXXXXSYLNSLKFEIKFYETKEQRDLDFEKQASKYKDAK 360 DDYVF SF VN ++TT SYLN+LKF++KFYE+ E+RDLDFE + +Y+ Sbjct: 301 DDYVFHSFLVNTFETTKDAILKTLLDSYLNTLKFQVKFYESCEKRDLDFELKVKEYQTPS 360 Query: 361 YFITKFNNQFKGFYEGWSSHKNELKIKTMQNKHTNLSEISMLVKRSNELFFENALYKWAN 420 YFITKFNNQFKGFYEGW+ HKNELKIKT QNK NLSEISMLVKRSNELFFEN+ Y+WAN Sbjct: 361 YFITKFNNQFKGFYEGWNKHKNELKIKTSQNKIKNLSEISMLVKRSNELFFENSFYRWAN 420 Query: 421 VFYR 424 VFY+ Sbjct: 421 VFYQ 424 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508417|ref|NP_110367.1| glutamyl-tRNA synthetase [Mycoplasma pneumoniae M129] (484 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073132.1| glutamyl-tRNA synthetase (gltX) [Mycoplasma gen... 730 0.0 >ref|NP_073132.1| glutamyl-tRNA synthetase (gltX) [Mycoplasma genitalium G-37] Length = 484 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/484 (70%), Positives = 414/484 (85%) Query: 1 MEKIRTRYAPSPTGYLHVGGARTAIFNFLLAKHFNGEFIIRIEDTDTERNVEGGIESQLE 60 MEKIRTRYAPSPTGYLHVGG RTAIFNFLLAKHFNGEFIIRIEDTDTERN++ GI SQ + Sbjct: 1 MEKIRTRYAPSPTGYLHVGGTRTAIFNFLLAKHFNGEFIIRIEDTDTERNIKEGINSQFD 60 Query: 61 NLRWLGIIPDESIYNPGNYGPYIQSQKLATYKKLAYELVGKGLAYRCFCTKEKLEHERQL 120 NLRWLG+I DES+YNPGNYGPY+QSQKLA YKKLA++L+ K LAYRCFC+KEKLE +R+ Sbjct: 61 NLRWLGVIADESVYNPGNYGPYLQSQKLAVYKKLAFDLIEKNLAYRCFCSKEKLESDRKQ 120 Query: 121 ALEHHQTPKYLGTCRNLHSKHIQTNLDNQVPFTIRLKINQDAEFAWNDQVRGKITIPGNS 180 A+ +H+TPKYLG CRNLHSK I +L+ PFTIRLKIN +AE++WND VRG+ITIPG++ Sbjct: 121 AINNHKTPKYLGHCRNLHSKKITNHLEKNDPFTIRLKINNEAEYSWNDLVRGQITIPGSA 180 Query: 181 LTDIVLLKANGIATYNFAVVIDDHDMEITDVLRGAEHISNTAYQLAINQALGYQRIPRFG 240 LTDIV+LKANG+ATYNFAVVIDD+DMEITDVLRGAEHISNTAYQLAI QALG++RIPRFG Sbjct: 181 LTDIVILKANGVATYNFAVVIDDYDMEITDVLRGAEHISNTAYQLAIYQALGFKRIPRFG 240 Query: 241 HLSVIVDKSGKKLSKRDTKTIQFIEQFKQEGYLPEAVVNFLALLGWNSDFNREFFTINQL 300 HLSVIVD+SGKKLSKRD KT QFIEQFKQ+GYLPEA++NFLALLGW+ +N+EFF + QL Sbjct: 241 HLSVIVDESGKKLSKRDEKTTQFIEQFKQQGYLPEALLNFLALLGWHPQYNQEFFNLKQL 300 Query: 301 IESFTVNRVVGAPAFFDIKKLQWINAHYIKELSDNAYFNFIDNYLTIDFDYLKNKRKEVS 360 IE+F+++RVV APAFFDIKKLQWINA+YIK+L+DNAYFNFIDNYL + DYLK+K +E+S Sbjct: 301 IENFSLSRVVSAPAFFDIKKLQWINANYIKQLTDNAYFNFIDNYLDVKVDYLKDKNREIS 360 Query: 361 LLFKNQLAFGIEINQLIKETFAPKLGVQHLSVKHRELFKXXXXXXXXXXXXXXXXPDWTK 420 LLFKNQ+ G++IN+LI+E+FA K+GV++L+ K LFK +W Sbjct: 361 LLFKNQITHGVQINELIRESFATKIGVENLAKKSHILFKNIKLFLEQLAKSLQGLEEWKA 420 Query: 421 DNVKSTLTQIGEQFNLKGKKLFMPLRLIFTNKEHGPDLAGIMVLHGKTQVLALLQEFIHA 480 + +K+T+ ++G FNLKGK+LFMP+RLIFTNKEHGPDLA I+ + K + L+++FI+A Sbjct: 421 EQIKTTINKVGAVFNLKGKQLFMPIRLIFTNKEHGPDLAHIIEIFDKESAINLIKQFINA 480 Query: 481 TNLF 484 TNLF Sbjct: 481 TNLF 484 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508418|ref|NP_110368.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase [Mycoplasma pneumoniae M129] (263 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073133.1| dimethyladenosine transferase [Mycoplasma genit... 297 7e-083 >ref|NP_073133.1| dimethyladenosine transferase [Mycoplasma genitalium G-37] Length = 259 Score = 297 bits (761), Expect = 7e-083, Method: Compositional matrix adjust. Identities = 145/263 (55%), Positives = 189/263 (71%), Gaps = 4/263 (1%) Query: 1 MNSFYPSRKLGQNFTVDQSVIAKTCRLIKSLNPTALIEVXXXXXXXXXXXXXXXXXYHGI 60 MNSF+PSRKLGQNFTV+ SVI + +K+LNP A++E+ Y GI Sbjct: 1 MNSFFPSRKLGQNFTVNLSVIKRIFAFVKNLNPQAIVEIGVGKGALTNYLLKLKIPYKGI 60 Query: 61 ELDKRLAEYLLVNEILTEEQLTIGDALKQNLDQYFPDTIPLLCGNIPYSISSPLIANFLA 120 E+DKRL EYLLV +ILTE+QL GD LK++ + +F + PLLCGNIPYSI+SP+I FL Sbjct: 61 EIDKRLIEYLLVEKILTEDQLVKGDILKKDFNSFFENLSPLLCGNIPYSITSPIINKFLE 120 Query: 121 SKLQQFVLVCQWEFGQRLVAPVNSPNYSAFGVFCQYHLQIKSVFKIDKVAFKPKPQVDSV 180 SKL+ FVL+ Q EF RL+A VNS +YSAFG FCQY+L I +VFKID+ AFKPKP+VDS Sbjct: 121 SKLRSFVLMTQKEFANRLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPKPKVDST 180 Query: 181 LMLLKKKPQVAYEAHFGRFLKQCFHQRRKLLVNNLKQLLPPTLLTNVLQQQDLAATVRAQ 240 L+LL+K V+Y+ FG FLKQCF+QRRK+L+NNLK L N++Q+Q+L ++RAQ Sbjct: 181 LILLEKNKSVSYDFKFGLFLKQCFNQRRKMLINNLKHFFAVDYLLNIIQKQNLKTSIRAQ 240 Query: 241 ELTPTQLFRLYLSLKPHLSDGKD 263 EL+P QLF LY ++ +GK+ Sbjct: 241 ELSPCQLFNLY----QNICNGKN 259 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508419|ref|NP_110369.1| hypothetical protein MPN680 [Mycoplasma pneumoniae M129] (385 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073134.1| hypothetical protein MG464 [Mycoplasma genitali... 657 0.0 >ref|NP_073134.1| hypothetical protein MG464 [Mycoplasma genitalium G-37] Length = 385 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/385 (83%), Positives = 343/385 (89%) Query: 1 MPLNLNKKHKELKTTFNPFWSAAVVNEKNGLKNLKKAWGIIFKVLKVAIFIFLTIVGLWG 60 MP+ L + +KE+KTTFNPFWSAAVVNEKN KN KK I KV+KV IFIFLTIVGLWG Sbjct: 1 MPIKLAQTNKEIKTTFNPFWSAAVVNEKNNWKNFKKFSAIFIKVIKVFIFIFLTIVGLWG 60 Query: 61 CTQTLAQPWTGTNQLLGSGLEIGYNFGTTGDYRYDLQSNNVGPYFTFSDYTLAYGPFYGW 120 CTQTLAQPWTGTNQ+LGSGLEIGY FGTTGDYRYDL SNN GPYFTFSDYTLAYGPFYGW Sbjct: 61 CTQTLAQPWTGTNQVLGSGLEIGYKFGTTGDYRYDLISNNFGPYFTFSDYTLAYGPFYGW 120 Query: 121 FVWPASQIVLPIMYATRVPLGSGPELGFNMXXXXXXXXXXXXXXXXXXXXNSTLALEKMN 180 FVWPA+QIVLPIMYATRVPLGSG ELGFNM NSTLALEKMN Sbjct: 121 FVWPAAQIVLPIMYATRVPLGSGVELGFNMILSLIVLLLLVRLITIVITLNSTLALEKMN 180 Query: 181 EVQGKLAEINAKYKGALDLQSKRNRQMEIMSLYKKHNIKSSASFVQVFVTLPIFLIIYRI 240 EVQGKLAEINAKYKGA+DLQSKRNRQ+EIMSLYKKHNIKSSA+FVQVFVTLPIFLIIYRI Sbjct: 181 EVQGKLAEINAKYKGAIDLQSKRNRQLEIMSLYKKHNIKSSAAFVQVFVTLPIFLIIYRI 240 Query: 241 VTTLRPIKAIILFNFWDLSKVPLTEIFSNFTSTGWTFIIFLIIVLPVQFISQKLPQIWAS 300 VTTLRPIKAIILFNFWDLSKVPLTEIFSNFT+TGW FIIFL+IVLPVQF+SQKLPQ+WAS Sbjct: 241 VTTLRPIKAIILFNFWDLSKVPLTEIFSNFTTTGWPFIIFLVIVLPVQFLSQKLPQVWAS 300 Query: 301 KRNENAKAHSQKSIEQLNKTKRMQLIFYFVFAVITAFSAAGVGVYWFLNALFTLLQSYLT 360 KRNENAKAHSQKSIEQLNKTK+MQLIFYFVFA ITAFSAAGVGVYWFLNALFTLLQSYLT Sbjct: 301 KRNENAKAHSQKSIEQLNKTKKMQLIFYFVFAAITAFSAAGVGVYWFLNALFTLLQSYLT 360 Query: 361 HLFIVKRRTRRRLTYSKLEQMLERE 385 H+FIVKRR +R+ YSKL+ +LERE Sbjct: 361 HVFIVKRREKRKQNYSKLDLILERE 385 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508420|ref|NP_110370.1| RNaseP C5 chain [Mycoplasma pneumoniae M129] (118 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073135.1| ribonuclease P protein component (rnpA) [Mycopl... 140 4e-036 >ref|NP_073135.1| ribonuclease P protein component (rnpA) [Mycoplasma genitalium G-37] Length = 128 Score = 140 bits (353), Expect = 4e-036, Method: Compositional matrix adjust. Identities = 65/114 (57%), Positives = 90/114 (78%) Query: 1 MSAKTKHHLRDRKVFAALLRSKRRFFSTFLMAYFMPNRVRTWRAAVSISKTKYKLAVERN 60 +S K H LR+RKVF +L+SK RFF TF+ AYF+ N TWR A+SI+KTKYKLAV+RN Sbjct: 8 VSVKKSHSLRERKVFTTILQSKTRFFGTFINAYFIKNNHSTWRVAISIAKTKYKLAVQRN 67 Query: 61 LIRRQVKAIMREQFCNLNAVDVLVIINQGFLELTFKEKQTIFLNLCQKLQELDA 114 LI+RQ+++I ++ NL D+LVI+N+GF+ELTFKEKQ +FL L ++++E+DA Sbjct: 68 LIKRQIRSIFQQISNNLEPWDILVIVNKGFIELTFKEKQKLFLQLLKRIKEVDA 121 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508421|ref|NP_110371.1| ribosomal protein L34 [Mycoplasma pneumoniae M129] (48 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073136.1| ribosomal protein L34 (rpL34) [Mycoplasma genit... 60 3e-012 >ref|NP_073136.1| ribosomal protein L34 (rpL34) [Mycoplasma genitalium G-37] Length = 48 Score = 60.5 bits (145), Expect = 3e-012, Method: Compositional matrix adjust. Identities = 31/48 (64%), Positives = 32/48 (66%) Query: 1 MKRTYQPSKLKRAKTHGFLARMATASGXXXXXXXXXXXXXXXTVSSER 48 MKRTYQPSKLKRAKTHGF+ARMATA G TVSSER Sbjct: 1 MKRTYQPSKLKRAKTHGFMARMATAQGRKVLRQRRFKNRAQLTVSSER 48 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508422|ref|NP_110372.1| ABC transporter subunit [Mycoplasma pneumoniae M129] (339 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 426 e-121 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 160 2e-041 ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 143 3e-036 ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasm... 84 2e-018 ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein ... 83 3e-018 ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding prote... 82 1e-017 ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasm... 78 1e-016 ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasm... 78 2e-016 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 77 2e-016 ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma... 76 6e-016 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 75 1e-015 ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding prote... 66 5e-013 ref|NP_072781.1| galactoside ABC transporter, ATP-binding protei... 64 2e-012 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 426 bits (1096), Expect = e-121, Method: Compositional matrix adjust. Identities = 208/240 (86%), Positives = 225/240 (93%) Query: 99 YRTPYVEQKQGMVISIDKMWKHVHGEDSKEQIAILSDVSLEIGYGEIVIILGPSGSGKTT 158 Y P+ +Q +G+VI+I+KMWK+VH +DSK++I+ILSDVSL+I YGEIVIILG SGSGKTT Sbjct: 71 YIPPFAQQAKGIVITINKMWKNVHNDDSKQEISILSDVSLQIAYGEIVIILGSSGSGKTT 130 Query: 159 LLNLIGGYDSISLGSCVVANCPLEKCTTEQLLTYRKLNLGYVYQRYNLIELLSAYDNIAI 218 LLNLIGGYDSISLGSC+VANCPLEKCT+EQLLTYRK NLGYVYQRYNLIELLSAYDNIAI Sbjct: 131 LLNLIGGYDSISLGSCIVANCPLEKCTSEQLLTYRKNNLGYVYQRYNLIELLSAYDNIAI 190 Query: 219 SQNLIPKEQRHLDIEELAAKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEP 278 SQNLIPK QR LDIEELA KLDIKEILYKFPYEMSGGQKQRVAIARAIIKEP+LLLCDEP Sbjct: 191 SQNLIPKYQRRLDIEELAEKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEP 250 Query: 279 TGALDSNSAENIIALLQAINKEYKQTILMVTHDETLTRIANRIIKISDGKIVSNELVRPL 338 TGALDSNSAENII LLQ INK YKQTILMVTHD +LTRIANRIIKISDGKIVSN+LVRPL Sbjct: 251 TGALDSNSAENIINLLQTINKTYKQTILMVTHDVSLTRIANRIIKISDGKIVSNQLVRPL 310 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 160 bits (405), Expect = 2e-041, Method: Compositional matrix adjust. Identities = 82/201 (40%), Positives = 123/201 (61%) Query: 131 AILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCTTEQLL 190 A+L V L I + ++ILGPSGSGKTTLLN+I G D S GS +V + +L Sbjct: 250 AVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLT 309 Query: 191 TYRKLNLGYVYQRYNLIELLSAYDNIAISQNLIPKEQRHLDIEELAAKLDIKEILYKFPY 250 +R+ +GY++Q+Y L+ L+ +NI I NL P + + I+ L + + + K P Sbjct: 310 KFRQKYVGYIFQQYGLLPNLTVRENIEIGANLQPDPSKRISIDALLEAVGMDSLQKKLPN 369 Query: 251 EMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQTILMVTH 310 E+SGGQ+QRV+IARA K P L+ DEPTGALD + ++ AI K Y+ T+++VTH Sbjct: 370 ELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMIIVTH 429 Query: 311 DETLTRIANRIIKISDGKIVS 331 + + +A+ +I ++DGKI S Sbjct: 430 NNLIANLADLVIYVADGKIKS 450 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 143 bits (360), Expect = 3e-036, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 127/204 (62%), Gaps = 4/204 (1%) Query: 132 ILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCTTEQLLT 191 I + ++L+I GE V+ILG SGSGKT+LL+LI D + G V C+ +L Sbjct: 71 ICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNTICCSDAKLTA 130 Query: 192 YRKLNLGYVYQRYNLIELLSAYDNIAISQNLIPKEQRHLDIEELAAKLDIKEI-LYKFPY 250 R N+GY++Q+Y L+ L DNI ++ +P ++R + E + + +K + Sbjct: 131 LRNKNVGYIFQQYGLLRDLDVDDNIKLA---LPLKKRFNNNLEELLERLELKEHRHKKVH 187 Query: 251 EMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQTILMVTH 310 ++SGGQ+QRVAIARA+IKEP++L DEPTGA++ + ++ I+ N++ TI++VTH Sbjct: 188 KLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIVTH 247 Query: 311 DETLTRIANRIIKISDGKIVSNEL 334 +E + +A R+IKI DGKI+ + L Sbjct: 248 NEKIVELAKRVIKIHDGKIIVDYL 271 >ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 304 Score = 84.0 bits (206), Expect = 2e-018, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 21/223 (9%) Query: 121 VHGEDSKEQIAILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCP 180 V + I ++ D S +I I+G SGSGK+TL+N G + G V + Sbjct: 25 VFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIY 84 Query: 181 LEKCTTEQLLTYRKL----NLGYVYQRYNL----IELLSAYDNIAISQNLIPKEQRHLDI 232 + ++ ++KL ++ + + Y L +E + +A+ Q+ Q+ Sbjct: 85 I-GAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQSKYDARQKA--- 140 Query: 233 EELAAKLDIKEILYKF----PYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAE 288 A L++ + Y F P+E+SGGQK+RVAIA + EP +L+ DEPT LD Sbjct: 141 ---AYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGER 197 Query: 289 NIIALLQAINKEYKQTILMVTHD-ETLTRIANRIIKISDGKIV 330 ++ L++ K+ ++T+ M+TH E + +A+ ++ ++ GK+V Sbjct: 198 EMMQLIKTA-KQQQRTVFMITHQMENVLEVADVVLVLAKGKLV 239 >ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length = 329 Score = 83.2 bits (204), Expect = 3e-018, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 116/213 (54%), Gaps = 20/213 (9%) Query: 132 ILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANC-PLEKCTTEQL- 189 +L D++L+I +I ++G SG GK+T + + + ++ + + L K + Sbjct: 98 VLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGII 157 Query: 190 --LTYRKLNLGYVYQRYNLIELLSAYDNIAI--------SQNLIPKEQRHLDIEELAAKL 239 LT R ++G V+Q+ S ++NIA ++N I + R I AA Sbjct: 158 NDLTLR-TSVGMVFQKLTPFNF-SIFENIAYGIRAHGIHNKNAINEIVRQALIS--AALW 213 Query: 240 D-IKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAIN 298 D +K+ L++ +SGGQ+QR+ IARAI +P +LL DEPT ALDS + +I L+Q + Sbjct: 214 DEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLK 273 Query: 299 KEYKQTILMVTHDETLT-RIANRIIKISDGKIV 330 +++ TI++VTH T RI + I +DG+++ Sbjct: 274 EKF--TIVIVTHSMAQTIRITDETIFFADGRVI 304 >ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length = 848 Score = 81.6 bits (200), Expect = 1e-017, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 63/90 (70%), Gaps = 1/90 (1%) Query: 242 KEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEY 301 +E Y++P+E SGGQ+QR+AIARA+I +P+L++ DE ALD + +I +L+ + K++ Sbjct: 675 REHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKH 734 Query: 302 KQTILMVTHDETLTR-IANRIIKISDGKIV 330 T+L + HD ++ + + NR+I + GKIV Sbjct: 735 NLTVLFIAHDLSMVQTVCNRLIIMHRGKIV 764 >ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 357 Score = 78.2 bits (191), Expect = 1e-016, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 22/207 (10%) Query: 143 GEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVAN-CPLEKCTTEQLLTYRKLNLGYVY 201 +I +I G SGSGKTTL+ +G ++ S G AN C +++ K +GY+ Sbjct: 100 NKITVIFGESGSGKTTLIKQLGLFEKPSFGYINCANYCYFANQYQQKITKNFKQKIGYIL 159 Query: 202 QRYN--------LIELLSAYDNIAISQNL-IPKEQRHLDIEELAAKLDIKEILYKFPYEM 252 Q+ L E+L+ N+ + + +++LD+ L IK P E+ Sbjct: 160 QKAEDQFFCDSILEEVLTGAVNLKLCHKKDVNYAKKYLDLCGLENIPLIKN-----PIEL 214 Query: 253 SGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQT--ILMVTH 310 S GQK+R+A+A + + + L+ DEPT LD + N+ +L A+ KQT I++V+H Sbjct: 215 SDGQKKRLALASVLAMQVKFLILDEPTVGLDQMAISNLSKMLVAM----KQTTRIVIVSH 270 Query: 311 D-ETLTRIANRIIKISDGKIVSNELVR 336 D + + A++II + GKI+ V Sbjct: 271 DVDFIFETADKIIHLHQGKIIHQTTVN 297 >ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 245 Score = 77.8 bits (190), Expect = 2e-016, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 23/223 (10%) Query: 132 ILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSC----VVANCPLEKCTTE 187 +L ++S ++ E V +LG SG GK++LLN + + G V +N K + Sbjct: 21 LLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVYFDGVASNKKEYKKLKK 80 Query: 188 QLLTYRKLNLGYVYQRYNLIE--------LLSAYDNIAISQNLIPKEQRHLDIEELA--A 237 Q Y+ Q NLI+ L SA + Q LI E + + + LA Sbjct: 81 QC--------SYLDQIPNLIDTDYVYEAILRSAKQKLTWLQKLICFEPKWIKDKILAILK 132 Query: 238 KLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAI 297 ++++ + + ++S GQKQRV IA+ K P+LLL DEPT LD +A I+ L+ Sbjct: 133 EVNLNDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDLITDF 192 Query: 298 NKEYKQTILMVTHDETLT-RIANRIIKISDGKIVSNELVRPLS 339 K K T++ VTHD L + + RII + + +V + L L+ Sbjct: 193 VKREKITLVFVTHDIDLALKYSTRIIALKNHALVLDRLTEKLT 235 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 77.0 bits (188), Expect = 2e-016, Method: Compositional matrix adjust. Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 1/97 (1%) Query: 234 ELAAKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIAL 293 E+A KL I +IL K P ++SGGQ+QRVAIARAI++ P+LLL DEP LD+ Sbjct: 350 EVANKLAITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQW 409 Query: 294 LQAINKEYKQTILMVTHD-ETLTRIANRIIKISDGKI 329 ++ +E + T + VTHD E I++ I+ +S GK+ Sbjct: 410 IRQFQQELQITTVFVTHDQEEAMSISDVIVCMSTGKV 446 >ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length = 274 Score = 75.9 bits (185), Expect = 6e-016, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 107/208 (51%), Gaps = 8/208 (3%) Query: 126 SKEQIAILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCT 185 S ++ ++ ++S + GE V I+G +GSGK+T+ L+ G G + K Sbjct: 17 SYNELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKI----FGKTV 72 Query: 186 TEQLLTYRKLNLGYVYQRY-NLIELLSAYDNIA--ISQNLIPKEQRHLDIEELAAKLDIK 242 ++Y + N+G ++Q N ++ D+IA + +++ I+E+ + Sbjct: 73 DFDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQTD 132 Query: 243 EILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYK 302 + + P+ +SGGQKQRVAIA + P +++ DE T LD + + I + + K+ K Sbjct: 133 GFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGK 192 Query: 303 QTILMVTHDETLTRIANRIIKISDGKIV 330 ++ +THD A++++ +++GK++ Sbjct: 193 -CVISITHDMEEVTKADKVLVMNEGKLI 219 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 74.7 bits (182), Expect = 1e-015, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 59/85 (69%), Gaps = 1/85 (1%) Query: 247 KFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQTIL 306 + P E+SGG KQRVA+AR+++ EP +LL DEP ALD+ +N+ LQ I+K+ T + Sbjct: 343 RLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQKELQQIHKKSGLTFI 402 Query: 307 MVTHD-ETLTRIANRIIKISDGKIV 330 +VTHD E +++RI+ +++G I+ Sbjct: 403 LVTHDQEEALVLSDRIVVMNEGNIL 427 >ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length = 402 Score = 66.2 bits (160), Expect = 5e-013, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 1/111 (0%) Query: 226 EQRHLDIEELAAKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSN 285 E++ L+I + D K+ L FP E SGG +QR+ IA A+ EP L++ DEPT ALD Sbjct: 183 EKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVT 242 Query: 286 SAENIIALLQAINKEYKQTILMVTHDETL-TRIANRIIKISDGKIVSNELV 335 ++ L++ + TI+ ++H+ +L + + + GKIV LV Sbjct: 243 IQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLV 293 >ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length = 564 Score = 64.3 bits (155), Expect = 2e-012, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 101/204 (49%), Gaps = 12/204 (5%) Query: 135 DVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCTTEQLLTYRK 194 DVSL + + ILG +G+GK+TL +++ G G + + +++ + ++ Sbjct: 25 DVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKIFIGEKQVNFKSSKDAVKHK- 83 Query: 195 LNLGYVYQRYNLIELLSAYDNIAISQN-------LIPKEQRHLDIEELAAKLDIKEILYK 247 +G V+Q + LIE + DNI + LI ++ I+ + K I L + Sbjct: 84 --IGMVHQHFKLIENYTVLDNIILGNESRFGFLPLINRKVSEAKIKTIMEKYGIFVDLKQ 141 Query: 248 FPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQTILM 307 ++ GQ+QRV I + + ++ +L+ DEPT L +N + ++ K+ +TI++ Sbjct: 142 KVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIANF-KKLGKTIVL 200 Query: 308 VTHD-ETLTRIANRIIKISDGKIV 330 ++H + ++A+ + GK+V Sbjct: 201 ISHKLNEIKQVADTATVLRLGKVV 224 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508423|ref|NP_110373.1| conserved hypothetical protein, suggestion: membrane transporter component [Mycoplasma pneumoniae M129] (1882 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073138.1| hypothetical protein MG468 [Mycoplasma genitali... 2257 0.0 ref|NP_072726.1| hypothetical protein MG064 [Mycoplasma genitali... 94 1e-020 >ref|NP_073138.1| hypothetical protein MG468 [Mycoplasma genitalium G-37] Length = 1783 Score = 2257 bits (5848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1175/1857 (63%), Positives = 1362/1857 (73%), Gaps = 113/1857 (6%) Query: 33 ETSILQLSNNLVNTYTALVQKTNSSDIVAPAIFKESSPVYKTELKEEKRHFSKIKLTEKK 92 ETSI+QLSNNLV+TYT LV KTNSSDIVAPAI KE++PVY L + +FSKIK+ +KK Sbjct: 33 ETSIVQLSNNLVSTYTTLVSKTNSSDIVAPAILKEANPVYIASLTNDSGYFSKIKIDDKK 92 Query: 93 INFIWPYQESDFGXXXXXXXXXXXXXXNN-PRKGDVNDKDKLFLARKRGILKAYGEANIA 151 IN+++PYQE+DFG PRKGDVN+KDKLFLARKRGILKAYGEANIA Sbjct: 93 INYLFPYQENDFGSDSGQSNGSGDNQNKTIPRKGDVNEKDKLFLARKRGILKAYGEANIA 152 Query: 152 EKRIYKGLAVSFQNTYSFTGTDQESNNLNQNTVSDPQNLIYDKEGNLLGYFVDGLILDGI 211 EKRIYKGLAVSF NT SF G+D + N++ +SDPQNLIYD GNLLGYF DGLI + I Sbjct: 153 EKRIYKGLAVSFNNTDSFNGSDISDSITNRHIISDPQNLIYDASGNLLGYFADGLIKETI 212 Query: 212 PLRAGIARFPXXXXXXXXXXXXXXXSEIKQASSATTVLQPLAAQAKMTDAKETTNNEEPK 271 LRAGIARFP K S+ T Q K+T ++T N +P+ Sbjct: 213 SLRAGIARFPGD----------------KGKSTGT--------QVKITQKQQTNN--DPQ 246 Query: 272 KDSNVEEQYTTNNKDKVWFKSDETQAXXXXXXXXXXXXXXXYLFTGGQEAANWFPNLYAN 331 KDS V Y TNNKDKVWFKSDET+A YLFTGG EAANWFPNLYAN Sbjct: 247 KDSTVNSLYKTNNKDKVWFKSDETKADNTDISAN-------YLFTGGNEAANWFPNLYAN 299 Query: 332 VPIVLPISPGSQFWLETNPXXXXXXXXXXXXXXXXXXSFSLTFTLDTSKLSHLDKEEFDW 391 +PI L I PGSQFW + NP SF+LTF LD SKL+ LD E+ W Sbjct: 300 IPIDLEIDPGSQFWKDVNPFKEIVEEFQTQKESKDNQSFTLTFNLDISKLNKLDNEQLKW 359 Query: 392 LEKQAETISSGSSFGDYNLKKKINSLKSFELNINKDWLKNKVKAEKETILDSLPGFSNSD 451 LE A+TI++ SSFGD++L+ K+ LK FEL INKDWLK KV++EK+TIL+SLPGFS+SD Sbjct: 360 LETNAKTIANNSSFGDWDLENKLKQLKKFELKINKDWLKKKVESEKDTILNSLPGFSDSD 419 Query: 452 KNTIFSTQSGDAKSGTQSNPSSLIALRSSVSFKPXXXXXXXXXXXXXXDKQESSADDGVK 511 K+TIF TQ+G ++ +++SF+P Q S A +G+ Sbjct: 420 KDTIFKTQNG------------MMVRNNNLSFQPSSNNLQLV------QNQNSQASNGIA 461 Query: 512 DPTFSDVQTEFDKIGTENHTPQKNLNNVYAALLHQWKSIFQEDLVKKVTALLEKYRDAFL 571 DP FS+VQT ++KI N+TP+K L+ VYAA+L QW+SIFQEDLVKK LLEKYRD FL Sbjct: 462 DPNFSNVQTAYNKIHQSNNTPEKTLDAVYAAVLDQWRSIFQEDLVKKTVDLLEKYRDHFL 521 Query: 572 KAKALKELEFSRQNLAIATNVSSEESASFLVSNKDSQKYNDLSIIEGINFKSWLAK---E 628 KA A +++S+QN+AIA NVSS ESASFLVSNKD Q+YNDLS+I+G++ KSWL K Sbjct: 522 KATAFNNIDYSKQNIAIANNVSSAESASFLVSNKDEQRYNDLSLIDGVDLKSWLFKPEQN 581 Query: 629 KSNPLDMVYGGKSNSEGFLEKVEYEFKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 688 +SNPLD +YGG+ + GFL+K++YEFKP Sbjct: 582 ESNPLDTIYGGQDANNGFLQKIDYEFKPSTSSGGMTASLKNTQALSPKSTK--------- 632 Query: 689 XXXXXXXXXXXXXFQIYPKLANILAQAQLPEASSIPDTLTNAIKQWSTLDKKGFEALDDT 748 F IYPKLANI+AQAQLPEA++IP T +A+KQW+ LD GF L + Sbjct: 633 -------------FPIYPKLANIIAQAQLPEATNIPTTALDALKQWTNLDANGFNNLKEE 679 Query: 749 GKSKAANNYVALLSYFTPEFQDPNELVVTNRQKLDIPIIFKNGVNPLTLPTDQQSLVVQT 808 K KAANNY+ALLSYFTP FQDPNEL+ TNRQ L+IPI KNGVNPL LPTDQQ+LVVQT Sbjct: 680 DKRKAANNYLALLSYFTPAFQDPNELIETNRQMLEIPITVKNGVNPLILPTDQQNLVVQT 739 Query: 809 PEAHGAVVSQQWLFKHDKEVLPLEGEYSWKEALENPKNLPNWLNDLPDKYKFSINGLTFA 868 PEAHGAVVSQQWLF+H+KE+LP EGEY+WK AL+ P N PNWLNDLPD+YKFSINGLTFA Sbjct: 740 PEAHGAVVSQQWLFRHNKEILPQEGEYAWKTALQTPNNFPNWLNDLPDRYKFSINGLTFA 799 Query: 869 ILGVGESVETGYPVLSTNSPLPNSQDEGLIFLNEQGYRSVLFAVPAASEENYYAFKSDDI 928 ILG+GESVETGYPVLS SPLPN+QDE LIF+N+Q YRS+LFAVPAA++ENYYAFKS D+ Sbjct: 800 ILGIGESVETGYPVLSLQSPLPNTQDEALIFVNDQAYRSILFAVPAANQENYYAFKSTDL 859 Query: 929 KAKFPGQDPIQVVASKLKGYLNVPDSDLAFNVKDISKFQYLTTARNYFPDLVQNYLAIAS 988 K + QDP+Q +A++L+GYL+VP SDLAFNVKDISKF YLTTARNYFPDLVQ+YLAI S Sbjct: 860 K-QHTDQDPVQFIANRLEGYLDVPRSDLAFNVKDISKFNYLTTARNYFPDLVQSYLAIVS 918 Query: 989 VVIAAFXXXXXXXXXXXXXKSFIKKNQTEFSIIRAGGFSTAKFIAGMSVFAGIVALASSF 1048 VIA F KSFIKKNQTEFSIIRAGGFST KFI GMSVFAGIVA+ SSF Sbjct: 919 TVIAIFLIILALYLIILLIKSFIKKNQTEFSIIRAGGFSTTKFIVGMSVFAGIVAIVSSF 978 Query: 1049 FGVLFAFLLERQVKGIISRYWFIALPANSFNWISFFGSMLLIFVIFQFISWIAFKQLFSK 1108 GVLFAFLLE QVKGII+RYWFIALP NSFNW+SFFGS + F +F+FISWIAFKQLFSK Sbjct: 979 LGVLFAFLLEGQVKGIINRYWFIALPENSFNWLSFFGSFFITFFVFEFISWIAFKQLFSK 1038 Query: 1109 PVNVLIDQGNETKFSVFLHLLKRKSYTMTPLGKFRVSLIISRLSRLFTYVXXXXXXXXXX 1168 PVNVLIDQGNETKFSV LHLLK KS+TM+PL KFRVSLI+SR SRLFTYV Sbjct: 1039 PVNVLIDQGNETKFSVLLHLLKHKSHTMSPLTKFRVSLIVSRFSRLFTYVGLSSVALLLI 1098 Query: 1169 XXXXTIPQKFGAAQSNTVLNRNFNYRLNLQTPTEQSGWYAIQPYSRFGQTDDSLGIKALY 1228 TIPQKF AAQ++T LNRNFNY+LNLQTPTEQSGWYAIQPYS FG TD++ GIK LY Sbjct: 1099 GIAGTIPQKFSAAQTSTSLNRNFNYKLNLQTPTEQSGWYAIQPYSHFGVTDNNNGIKTLY 1158 Query: 1229 KDKGDXXXXXXXXXXXXGNDKEHPYNLKELKISDRGGNPIKH-NGKEIELGNLLLPSFGG 1287 + + EHPY LK+ +R PIK +G E+ELGNLLLPS+GG Sbjct: 1159 NES-----------VQANSQNEHPYKPSNLKLKNRQDQPIKAADGTELELGNLLLPSYGG 1207 Query: 1288 AQQLNTDENFFRHASLSKWLIDFPIRVGGANINPWEIVEKSIPKQITQLLSASSDQFLIA 1347 AQQLNTDENFFRHASLSKW+IDFPIRVGG+NINPWEIVEKSIPKQITQLLSASSDQFLI+ Sbjct: 1208 AQQLNTDENFFRHASLSKWIIDFPIRVGGSNINPWEIVEKSIPKQITQLLSASSDQFLIS 1267 Query: 1348 VLTDDYFXXXXXXGFLTRNPRTNFIQLDAARVLTQINVFNPGGVKFNEQFLKFLTKVYGD 1407 VLTDD+F GFL RNPRTN IQLDA+RVLT I+VFNPGGVKFN+ FL F+ KVYGD Sbjct: 1268 VLTDDFFNNLNANGFLIRNPRTNQIQLDASRVLTTIDVFNPGGVKFNDSFLSFMLKVYGD 1327 Query: 1408 PELSYQDSKLTYGIVPVDPQIEETYTYVQGPFGFKETELNPDSPYTLTGISPDSKFVNLT 1467 EL+ QDSKL +GIVPVDP IEETYTYV+GPFGF+E L+ +SPYTLTGI+P+S FVNL Sbjct: 1328 FELAKQDSKLNFGIVPVDPAIEETYTYVEGPFGFQEDNLDENSPYTLTGINPESSFVNLI 1387 Query: 1468 DSGGNSLRSLISSDSEMNVIVNAGFQYANNTKIGDFIFIQPKNTATRYSEKFLKSPPKTP 1527 D GNSLR+LISSD EMNVIVNAGFQYANN IGD+++I+PKNTATRYSEKFLK+P Sbjct: 1388 DGSGNSLRNLISSDQEMNVIVNAGFQYANNINIGDYVYIKPKNTATRYSEKFLKAPLNNS 1447 Query: 1528 TVKFRVVGVSTDAFGQELYINQNIANRLLKLNGFDGRGVIKDVVK--DGQXXXXXXXXXX 1585 TV F+VVGVSTDAFGQELYINQ+IAN LLKL+G GRG+I+DV+K +GQ Sbjct: 1448 TVAFKVVGVSTDAFGQELYINQHIANNLLKLSGNQGRGIIRDVIKKTNGQ---------- 1497 Query: 1586 XXXXXXXXXXXXXXKDKYKIEYVKPTGYVPFNGVFSKELNPSLVSKALVLNSNIGVWXXX 1645 D+Y+I+YVKP GYVPFNGVFSKEL PSL++KALVLNS IGVW Sbjct: 1498 -----------SQSSDEYEIDYVKPNGYVPFNGVFSKELKPSLLNKALVLNSIIGVWGNF 1546 Query: 1646 XXXXXXXXXLVKGKENKIITSILPSDPDILKQLAKEKGENGVDSMTYENLRKKVIEKYTS 1705 LV+ K +K+ITSILP+DP+I+ +LA+EK SM YE+LRK+++ KY + Sbjct: 1547 TDFGNNFQNLVRNKLDKVITSILPTDPEIINKLAQEKQIINTTSMNYESLRKELVNKYKT 1606 Query: 1706 EWSSTQSLASGARGIFGDNIMVPALKLDAAGASAQIIRNNAEVLFNTVNQVDGFLLGTII 1765 EW+S L+ A IFG+NI+ P L +DAAG SAQIIRNNAEVLFNTVNQVD FLLGTII Sbjct: 1607 EWNSVNLLSQNASSIFGNNIIAPVLNIDAAGTSAQIIRNNAEVLFNTVNQVDAFLLGTII 1666 Query: 1766 PFIFITCVVLGISMLEEMKRIFISLKSIGYKDSQNLVSLLCFFIPAFXXXXXXXXXXXXX 1825 PFIFITCVVLGISMLEEMKRIFISLK+IGY+D QNL+SLL FFIPAF Sbjct: 1667 PFIFITCVVLGISMLEEMKRIFISLKAIGYRDVQNLISLLTFFIPAFVLALLISIGVLAG 1726 Query: 1826 XXXXXXXXXXXXXXXXLTNVFEFLPYMVGIVLFGATIFVIGSYFWIKLRSAELKEGF 1882 LTNVFEFLPYMVGIVLFG TIFVIGSYFWIKLRSAELKEGF Sbjct: 1727 VLIGIQAVVFNVAQVFLTNVFEFLPYMVGIVLFGVTIFVIGSYFWIKLRSAELKEGF 1783 >ref|NP_072726.1| hypothetical protein MG064 [Mycoplasma genitalium G-37] Length = 1331 Score = 94.0 bits (232), Expect = 1e-020, Method: Compositional matrix adjust. Identities = 139/601 (23%), Positives = 232/601 (38%), Gaps = 82/601 (13%) Query: 777 TNRQK--LDIPIIFKNGVNPLTLPTDQQSL----VVQTPEAHGAVVS-QQWLFKHD--KE 827 TN+ K D P N LTL + SL V+ P ++ +V+ W ++ KE Sbjct: 273 TNQVKNLFDTPSTLTNIGGQLTLQWTENSLTKQIVIFDPSSYETIVAPGNWTYQQQLGKE 332 Query: 828 VLPLEGEYSWKEALENP-KNLPNWLNDLPDKYKFSINGLTFAILGVGESVETGYPVLSTN 886 V P +W+ + P + + + KYK SI+ + + ++GVG S + YPV S + Sbjct: 333 VYP--DINNWESIKKLPLEQFESEFLKIDQKYKISIDNIDYLVIGVGISPDFVYPVFSAS 390 Query: 887 SPLPNSQDEGLIFLNEQGYRSVLFAVPAASEENYYAFKSDDIKAKFPGQDPIQVVASKLK 946 +PN ++E L ++N+ GY E + +F ++ P + I L+ Sbjct: 391 LIVPNIENEQLYYVNQTGY-----------ERTFSSFLTN------PVETAIVARLINLE 433 Query: 947 GYLNVPDS------------DLAFNVKDISKFQYLTTARNYF-PDLVQNYLAIASVVIAA 993 LN + A++ D + L AR F P+L+ N + + ++ + Sbjct: 434 SDLNTINQWAVENMSWPTNIKAAYSSSDTTNILNLLAARTVFIPNLI-NTINLVALFLTI 492 Query: 994 FXXXXXXXXXXXXXKSFIKKNQTEFSIIRAGGFSTAKFIAGMSVFAGIVALASSFFGVLF 1053 S++KKN + I++A G S K + +F I A+ + G F Sbjct: 493 AILTVAIIVSILILISYLKKNTEQIGILKANGLSGKKINLSLLIFGLIPAIVGAISGYSF 552 Query: 1054 AFLLERQVKGIISRYWFIALPANSFNWISFFGSMLLIFVIFQFISWIAFKQLFSKPVNVL 1113 + + S YWFI +SF+ + L + +I IS + + K V + Sbjct: 553 GIGFQDVAIHLFSNYWFIPTATSSFSVVGLLFFSLFVILIMSSISLLVGSIILKKDVVKI 612 Query: 1114 IDQGNETKFSVFLHLLKRKSYT-MTPLGKFRVSLIISRLSRLFTYVXXXXXXXXXXXXXX 1172 + +E K S L L +K + + +FRV+L + +L Sbjct: 613 LKHDSEFKVSR-LGLSSKKLFARFGIMTRFRVALAFNAPWKLVFLTLMSSFTMMILNLSF 671 Query: 1173 TIPQKFGAAQSNTVL-NRNFNYRLNLQTPTEQSGWYAIQPYSRFGQTDDSLGIKALYKDK 1231 F AQS T L N+N Y L + T QSG Q ++ G TD Sbjct: 672 ATKDSFENAQSKTNLTNQNHQYEFELASATTQSGLLKWQLFAELGTTDKR---------- 721 Query: 1232 GDXXXXXXXXXXXXGNDKEHPYNL--KELKISDRGGNPIKHNGKEIELGNLLLPSFGGAQ 1289 E L K + IS+ + N + I N L + G + Sbjct: 722 -----------------SESSVKLANKRMDISNVDASKDWKNQQVI---NFLSDASGFSN 761 Query: 1290 QLNTDENFFRHASLSKWLIDFPIRVGGANINPWEIVEKSIPKQITQLLSASSDQFLIAVL 1349 LN EN + SK +D+ + NPW + E +P + + FL A++ Sbjct: 762 DLNYLENIVQ----SKIGLDYSLGFNNIVSNPWRLSETLMPTNQASASNTAFQNFLKAII 817 Query: 1350 T 1350 T Sbjct: 818 T 818 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508424|ref|NP_110374.1| sulfate transport ATP-binding protein [Mycoplasma pneumoniae M129] (284 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasm... 383 e-108 ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasm... 159 2e-041 ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasm... 107 1e-025 ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-bind... 64 1e-012 ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding prote... 63 4e-012 ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasm... 60 2e-011 >ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 284 Score = 383 bits (984), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/284 (68%), Positives = 212/284 (74%) Query: 1 MSLNAKNKRSLDYCLQWPDFCQSKKASKLIVKLNKKHPKRRHYKDPEAKHYDVLFKGVCK 60 M L K + D L+ DF SKKASKLI KLNKKHPKR+ EAK YD+ FK VCK Sbjct: 1 MVLKTKENKKFDIYLKSSDFAVSKKASKLIKKLNKKHPKRKSLNSFEAKKYDIYFKEVCK 60 Query: 61 AVTNGITNQLICDHIDLKIAPGEFVVXXXXXXXXXXXXXXXXXALDRPTSGVSFVCGRST 120 AVTNGI NQLIC+HI+LKI PGEFVV ALDRPTSG SFVCG +T Sbjct: 61 AVTNGINNQLICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNT 120 Query: 121 ICCNDAQLTSLRNKNVGYIFQQYGLLRDLNVDDNIKLAVPFXXXXXXXXXXXXXXXXXXX 180 ICC+DA+LT+LRNKNVGYIFQQYGLLRDL+VDDNIKLA+P Sbjct: 121 ICCSDAKLTALRNKNVGYIFQQYGLLRDLDVDDNIKLALPLKKRFNNNLEELLERLELKE 180 Query: 181 XXXXXITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGT 240 + KLSGGQQQRVAIARALIKEP+ILFGDEPTGAVN+DISKKILQFFVEYNRDKGT Sbjct: 181 HRHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGT 240 Query: 241 TIVLVTHNEKIVELAKRVIKIHDGKIVADYLNQRPKTINEINWV 284 TIV+VTHNEKIVELAKRVIKIHDGKI+ DYLNQ PKTI +INWV Sbjct: 241 TIVIVTHNEKIVELAKRVIKIHDGKIIVDYLNQNPKTIEQINWV 284 >ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 466 Score = 159 bits (403), Expect = 2e-041, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 125/232 (53%), Gaps = 2/232 (0%) Query: 55 FKGVCKAVTNGITNQLICDHIDLKIAPGEFVVXXXXXXXXXXXXXXXXXALDRPTSGVSF 114 K V K +TNGIT + +DL I +F+V +DR +SG Sbjct: 235 LKNVYKYITNGITTNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVI 294 Query: 115 VCGRSTICCNDAQLTSLRNKNVGYIFQQYGLLRDLNVDDNIKLAVPFXX--XXXXXXXXX 172 V G + IC ND +LT R K VGYIFQQYGLL +L V +NI++ Sbjct: 295 VNGYNMICLNDRKLTKFRQKYVGYIFQQYGLLPNLTVRENIEIGANLQPDPSKRISIDAL 354 Query: 173 XXXXXXXXXXXXXITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFV 232 +LSGGQQQRV+IARA K P ++FGDEPTGA+++++++ +L+ F+ Sbjct: 355 LEAVGMDSLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFL 414 Query: 233 EYNRDKGTTIVLVTHNEKIVELAKRVIKIHDGKIVADYLNQRPKTINEINWV 284 + TT+++VTHN I LA VI + DGKI + + N PK + EI+W+ Sbjct: 415 AIKKRYQTTMIIVTHNNLIANLADLVIYVADGKIKSLHRNLNPKQVEEIHWI 466 >ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 311 Score = 107 bits (268), Expect = 1e-025, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 4/204 (1%) Query: 71 ICDHIDLKIAPGEFVVXXXXXXXXXXXXXXXXXALDRPTSGVSFVCGRSTICCNDAQLTS 130 I + L+IA GE V+ D + G V C QL + Sbjct: 104 ILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLLT 163 Query: 131 LRNKNVGYIFQQYGLLRDLNVDDNIKLA---VPFXXXXXXXXXXXXXXXXXXXXXXXXIT 187 R N+GY++Q+Y L+ L+ DNI ++ +P Sbjct: 164 YRKNNLGYVYQRYNLIELLSAYDNIAISQNLIP-KYQRRLDIEELAEKLDIKEILYKFPY 222 Query: 188 KLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGTTIVLVTH 247 ++SGGQ+QRVAIARA+IKEP++L DEPTGA++ + ++ I+ N+ TI++VTH Sbjct: 223 EMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYKQTILMVTH 282 Query: 248 NEKIVELAKRVIKIHDGKIVADYL 271 + + +A R+IKI DGKIV++ L Sbjct: 283 DVSLTRIANRIIKISDGKIVSNQL 306 >ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length = 559 Score = 64.3 bits (155), Expect = 1e-012, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 55/81 (67%), Gaps = 1/81 (1%) Query: 188 KLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGTTIVLVTH 247 +LSGG +QRVA+AR+L+ EP IL DEP A++ + K + + + ++ G T +LVTH Sbjct: 347 ELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQKELQQIHKKSGLTFILVTH 406 Query: 248 N-EKIVELAKRVIKIHDGKIV 267 + E+ + L+ R++ +++G I+ Sbjct: 407 DQEEALVLSDRIVVMNEGNIL 427 >ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length = 848 Score = 62.8 bits (151), Expect = 4e-012, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 52/81 (64%), Gaps = 1/81 (1%) Query: 188 KLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGTTIVLVTH 247 + SGGQ+QR+AIARALI +P+++ DE A++V I +++ + + T++ + H Sbjct: 684 EFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTVLFIAH 743 Query: 248 NEKIVE-LAKRVIKIHDGKIV 267 + +V+ + R+I +H GKIV Sbjct: 744 DLSMVQTVCNRLIIMHRGKIV 764 >ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length = 585 Score = 60.5 bits (145), Expect = 2e-011, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Query: 188 KLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGTTIVLVTH 247 K+SGGQQQRVAIARA+++ P++L DEP ++ + + Q+ ++ ++ T V VTH Sbjct: 367 KISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQITTVFVTH 426 Query: 248 N-EKIVELAKRVIKIHDGKI 266 + E+ + ++ ++ + GK+ Sbjct: 427 DQEEAMSISDVIVCMSTGKV 446 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508425|ref|NP_110375.1| chromosomal replication initiator protein DnaA [Mycoplasma pneumoniae M129] (439 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073140.1| chromosomal replication initiator protein (dnaA... 679 0.0 >ref|NP_073140.1| chromosomal replication initiator protein (dnaA) [Mycoplasma genitalium G-37] Length = 437 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/439 (75%), Positives = 383/439 (87%), Gaps = 2/439 (0%) Query: 1 MEQFSAFKLLLKKQYETTLGFYDKYIKNLKRFALKNNVLFVIVDNEFARETLNSNPDIVG 60 MEQF+AFK LLKK YE T+GF+DKYIK++ RF KNNVL ++++NEFAR +LN N +I+ Sbjct: 1 MEQFNAFKSLLKKHYEKTIGFHDKYIKDINRFVFKNNVLLILLENEFARNSLNDNSEIIH 60 Query: 61 LASKLYDDIRAVRFVNEQDFFINLAKLEEDNRETLYQSSGLSKNFTFKNFVVGDGNRRVY 120 LA LY+ I++V FVNEQDFF NLAKLEE++R+TLYQ+SGLSKN+TF+NFV+ +GN+R Y Sbjct: 61 LAESLYEGIKSVNFVNEQDFFFNLAKLEENSRDTLYQNSGLSKNYTFQNFVISEGNKRAY 120 Query: 121 EAGVRISETQDADFSPLFIYGETGLGKTHLLQAIGNDKFFHFPNAKVKYVVSSDFAQEVV 180 EAGVR++ETQD +FSPLFIYGETGLGKTHLLQAIGN+KF +FPNA+VKYVVSSDFAQEVV Sbjct: 121 EAGVRLAETQDNEFSPLFIYGETGLGKTHLLQAIGNEKFRNFPNARVKYVVSSDFAQEVV 180 Query: 181 NAFYQKEKDQGIEKLKAAYESLDLLLIDDTQIFGKKEKTLEILFSIFNNLVSKGKQIVFV 240 +AFYQ +D+GIEKLK YE+LDL+LIDDTQIFG+KEKTLEILF+IFNNLV KQIV V Sbjct: 181 DAFYQ--RDKGIEKLKKNYENLDLVLIDDTQIFGRKEKTLEILFNIFNNLVLNKKQIVLV 238 Query: 241 SDKTPDELANIDPRMVSRFKSGLLLKIEKHNLSSLCEILAVKLKEKDPNIQITNEAREKA 300 SDK PDEL +ID RM+SRFKSGLLLKIEKHNLSSLCEIL VKLKEKDPNIQITNEAR A Sbjct: 239 SDKAPDELIDIDARMISRFKSGLLLKIEKHNLSSLCEILTVKLKEKDPNIQITNEARHDA 298 Query: 301 AQISGNDVRSLNGIATKLLFYVKTTKQNLINNDNLXXXXXXXXXXXXXXXXDPYLLIENV 360 AQISGNDVR+LNGIATKLLF+ KT+KQNLIN +NL DPYLLIENV Sbjct: 299 AQISGNDVRALNGIATKLLFFAKTSKQNLINTENLKEILFEEFEKFHKKSFDPYLLIENV 358 Query: 361 CRRFNVPVDSVLSENRKAELVRVRDVCNYILREKYKMQFQQIGKIFKRNHSTVVAAVKRV 420 CRRFNVP+DSVLSENRKAELVRVRDVCNY+LR+KY MQFQQIGKIFKR+HS+V+ AVKRV Sbjct: 359 CRRFNVPMDSVLSENRKAELVRVRDVCNYLLRQKYNMQFQQIGKIFKRSHSSVLMAVKRV 418 Query: 421 AKMIEKDDSLQDIITSLVI 439 AKMIE D SL+D+ITSLVI Sbjct: 419 AKMIENDSSLRDVITSLVI 437 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508426|ref|NP_110376.1| hypothetical protein MPN687 [Mycoplasma pneumoniae M129] (250 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done ***** No hits found ****** BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508427|ref|NP_110377.1| ParA family of ATPases involved in chromosome partition [Mycoplasma pneumoniae M129] (270 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073141.1| soj protein (soj) [Mycoplasma genitalium G-37] 484 e-139 >ref|NP_073141.1| soj protein (soj) [Mycoplasma genitalium G-37] Length = 269 Score = 484 bits (1246), Expect = e-139, Method: Compositional matrix adjust. Identities = 241/267 (90%), Positives = 255/267 (95%), Gaps = 1/267 (0%) Query: 1 MIISFVNNKGGVLKTTMATNVAGSLVKLCPEQRKVILDLDGQGNVSASFGQNPERLNNTL 60 MIISFVNNKGGVLKTTMATNVAGSLVKLCPE+RKVILDLDGQGNVSASFGQNPERLNNTL Sbjct: 1 MIISFVNNKGGVLKTTMATNVAGSLVKLCPERRKVILDLDGQGNVSASFGQNPERLNNTL 60 Query: 61 IDILLKVPKFNGANSSIEIDDCLLPVYEGLDILPCNFELNFADIDIARKKYKASDIAEIV 120 IDILLKVPKF+G+N+ IEIDDCLL VYEGLDILPCNFELNFADIDI+RKKYKASDIAEIV Sbjct: 61 IDILLKVPKFSGSNNFIEIDDCLLSVYEGLDILPCNFELNFADIDISRKKYKASDIAEIV 120 Query: 121 KQLTRRYDFVLLDTPPNMATLVSTAMSLSDVIVIPFEPDQYSMLGLMRIVETIDTFKEKN 180 KQL +RY+FVLLDTPPNMATLVSTAMSLSDVIVIPFEPDQYSMLGLMRIVETIDTFKEKN Sbjct: 121 KQLAKRYEFVLLDTPPNMATLVSTAMSLSDVIVIPFEPDQYSMLGLMRIVETIDTFKEKN 180 Query: 181 PNLKTILVPTKVNMRTRLHNDVIELVKSKAHKNNVAFSEHFVSLTSKSSAAVGYEKLPIS 240 NLKTILVPTKVN+RTRLHN+VI+L K+KA KNNVAFS++FVSLTSKSSAAVGYEKLPIS Sbjct: 181 TNLKTILVPTKVNVRTRLHNEVIDLAKTKAKKNNVAFSKNFVSLTSKSSAAVGYEKLPIS 240 Query: 241 LVSPTSNKKYQTEYLEITKEILNLVNH 267 LVS S KKY EYLEITKEILNL N+ Sbjct: 241 LVSSPS-KKYLNEYLEITKEILNLANY 266 BLASTP 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|13508428|ref|NP_110217.1| Penicillin-binding protein-related factor A, putative recombinase [Mycoplasma pneumoniae M129] (172 letters) Database: Mgenitalium.faa 484 sequences; 175,929 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_073023.1| hypothetical protein MG352 [Mycoplasma genitali... 242 2e-066 >ref|NP_073023.1| hypothetical protein MG352 [Mycoplasma genitalium G-37] Length = 166 Score = 242 bits (617), Expect = 2e-066, Method: Compositional matrix adjust. Identities = 115/168 (68%), Positives = 144/168 (85%), Gaps = 5/168 (2%) Query: 1 MISANRGMFLETIVNQTIVRLGDHPDIWLEKRYLPIQPTAFKETRVQGALTAQKKSKTDY 60 MI+ANRGM LETIVNQTI RL DHPDIWLEKR+LPI+P AF+ V G ++ +KSKTDY Sbjct: 1 MINANRGMLLETIVNQTIARLKDHPDIWLEKRFLPIKPIAFRHAHVSGNVS--QKSKTDY 58 Query: 61 YGVYKGEIYFDFETKQTNKSNFALAQLAEHQLKHLKRINEIGGISFLLIYFQVQDLLYAL 120 YG+YKG +YFDFE KQTNKSNF +AQ+AEHQL HLKRI++IGG+SFLLIYFQ +D ++A Sbjct: 59 YGIYKG-MYFDFEAKQTNKSNFPIAQIAEHQLNHLKRIDQIGGVSFLLIYFQTKDQIFAF 117 Query: 121 HTKDLLQMIEAQKGKSKTIKRDLIDQKAQKINLIYPGVIDLIDVIENF 168 HTKDLL+ I+ Q +SKTIKR+LI+QK+QK+ L+YPG+IDLI +I++F Sbjct: 118 HTKDLLETIKNQ--ESKTIKRELIEQKSQKVPLLYPGIIDLISIIQSF 163 Database: Mgenitalium.faa Posted date: Apr 20, 2009 7:20 PM Number of letters in database: 175,929 Number of sequences in database: 484 Lambda K H 0.316 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 484 Number of Hits to DB: 84,803,661 Number of extensions: 4015194 Number of successful extensions: 19162 Number of sequences better than 1.0e-010: 689 Number of HSP's gapped: 17304 Number of HSP's successfully gapped: 955 Length of database: 175,929 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 137 (57.4 bits)