BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: Mgenitalium.faa 484 sequences; 175,929 total letters Query= gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit [Mycoplasma pneumoniae M129] Length=380 Score E Sequences producing significant alignments: (Bits) Value gi|12044851|ref|NP_072661.1| DNA polymerase III, subunit beta (dn... 525 0.0 >gi|12044851|ref|NP_072661.1| DNA polymerase III, subunit beta (dnaN) [Mycoplasma genitalium G-37] Length=364 Score = 525 bits (1352), Expect = 0.0, Method: Compositional matrix adjust. Identities = 257/364 (71%), Positives = 315/364 (87%), Gaps = 0/364 (0%) Query 17 LNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAENIDVLEEGEVIVKGKI 76 +NNVI+SNNK+KP+HSY LIEA EKEINFYANNEYFS KC L +NID+LE+G +IVKGKI Sbjct 1 MNNVIISNNKIKPHHSYFLIEAKEKEINFYANNEYFSVKCNLNKNIDILEQGSLIVKGKI 60 Query 77 FSELINGIKEDIITIQEKDQTLLVKTKKTNINLNTIDKKEFPRIRFNQNVDLKEFDELKI 136 F++LINGIKE+IITIQEKDQTLLVKTKKT+INLNTI+ EFPRIRFN+ DL EF++ KI Sbjct 61 FNDLINGIKEEIITIQEKDQTLLVKTKKTSINLNTINVNEFPRIRFNEKNDLSEFNQFKI 120 Query 137 QHSLLTKGLKKIAHAVSTFRESTRKFNGVNFNGSNGKQIFLEASDSYKLSVYEIKQKTDP 196 +SLL KG+KKI H+VS RE + KFNGVNFNGSNGK+IFLEASD+YKLSV+EIKQ+T+P Sbjct 121 NYSLLVKGIKKIFHSVSNNREISSKFNGVNFNGSNGKEIFLEASDTYKLSVFEIKQETEP 180 Query 197 FNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLSTELLIKLDNFLINYTSINESFPR 256 F+FI+E+NLLSFINSFNPE I ++RK++KD STE+LI +DNF+I+YTS+NE FP Sbjct 181 FDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSFSTEMLISMDNFMISYTSVNEKFPE 240 Query 257 VMQLFDFEPETKVTIQKNELKDALQRILTLAQNERFFLCDMQVTNSHLKINSNVQNIGAS 316 V F+FEPETK+ +QKNELKDALQRI TLAQNER FLCDMQ+ +S LKI + V NIG S Sbjct 241 VNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERTFLCDMQINSSELKIRAIVNNIGNS 300 Query 317 LEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEIELYFQGSNKYFLISSNNEPELKEIL 376 LEE++CLKFEG+KLNI+ N SLL+HI+SF+++EI FQG++KYFLI+S +EPELK+IL Sbjct 301 LEEISCLKFEGYKLNISFNPSSLLDHIESFESNEINFDFQGNSKYFLITSKSEPELKQIL 360 Query 377 VPSK 380 VPS+ Sbjct 361 VPSR 364 Lambda K H a alpha 0.316 0.135 0.367 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 43452948 Query= gi|13507741|ref|NP_109690.1| similar to j-domain of DnaJ [Mycoplasma pneumoniae M129] Length=309 Score E Sequences producing significant alignments: (Bits) Value gi|12044852|ref|NP_072662.1| dnaJ-like protein [Mycoplasma genita... 437 2e-157 >gi|12044852|ref|NP_072662.1| dnaJ-like protein [Mycoplasma genitalium G-37] Length=310 Score = 437 bits (1124), Expect = 2e-157, Method: Compositional matrix adjust. Identities = 206/309 (67%), Positives = 257/309 (83%), Gaps = 1/309 (0%) Query 1 MTLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEY 60 M LYDLLELP TA+++EIK AYKRLAKRYHPD+NK G+ TFV+INNAY++LSD QK +Y Sbjct 1 MNLYDLLELPTTASIKEIKIAYKRLAKRYHPDVNKLGSQTFVEINNAYSILSDPNQKEKY 60 Query 61 DAMLRFSEFEDRVKRLDFSIKWHEQFMEELQFHHNWDFDFIRNREYTQPTP-TNNKYSSF 119 D+ML+ ++F++R+K LD S++WHE FMEEL+ W+FDF + E +P T NKY+SF Sbjct 61 DSMLKVNDFQNRIKNLDISVRWHENFMEELELRKTWEFDFFSSDEDFFYSPFTKNKYASF 120 Query 120 LDKDVSLAFYQLYSKGKLDFDLEDTLLRRHSIKQAFLKGKKLNDVLKEQYNYLGWLEAKR 179 LDKDVSLAF+QLYSKGK+D LE +LL+R +K+A + K +V+KEQYNY GW+EAKR Sbjct 121 LDKDVSLAFFQLYSKGKIDHQLEKSLLKRRDVKEACQQNKNFIEVIKEQYNYFGWIEAKR 180 Query 180 YFNIDVEIELTPKEVREGGVVNLPLKIKVISNNYPGQMWYELNKNYSFRLLWDIKNGEVA 239 YFNI+VE+ELT +E+R+ VVNLPLKIKVI+N++P Q+WYE+ KNYSFRL WDIKNGE+A Sbjct 181 YFNINVELELTQREIRDRDVVNLPLKIKVINNDFPNQLWYEIYKNYSFRLSWDIKNGEIA 240 Query 240 EFFGKGNRALGWRGDLIVRMRIVDKIKKRLRIFSSHFEQDKTKLWFLVPQDKQDNPNKWV 299 EFF KGNRALGW+GDLIVRM++V+K+ KRLRIFSS FE DK+KLWFLVP DKQ NPNK V Sbjct 241 EFFNKGNRALGWKGDLIVRMKVVNKVNKRLRIFSSFFENDKSKLWFLVPNDKQSNPNKGV 300 Query 300 FDYKTHEFI 308 F+YKT FI Sbjct 301 FNYKTQHFI 309 Lambda K H a alpha 0.321 0.138 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33949711 Query= gi|13507742|ref|NP_109691.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129] Length=650 Score E Sequences producing significant alignments: (Bits) Value gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (gyrB) [Mycopla... 1242 0.0 gi|12045055|ref|NP_072865.1| topoisomerase IV subunit B (parE) [M... 550 0.0 >gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (gyrB) [Mycoplasma genitalium G-37] Length=650 Score = 1242 bits (3213), Expect = 0.0, Method: Compositional matrix adjust. Identities = 589/650 (91%), Positives = 629/650 (97%), Gaps = 0/650 (0%) Query 1 MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFA 60 ME+NNK YDSSSIK+LEGLEAVRKRPGMYIGSTGEEGLHHMIWEI+DNSIDEAMGGFA Sbjct 1 MEENNKANIYDSSSIKVLEGLEAVRKRPGMYIGSTGEEGLHHMIWEIVDNSIDEAMGGFA 60 Query 61 STVKLTLKDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLH 120 S VKLTL+DNFVT VEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLH Sbjct 61 SFVKLTLEDNFVTRVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLH 120 Query 121 GVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPDFT 180 GVGASVVNALSSSFKVWV R++++YFL+F +GG+VIGDLV EG +KEHGT VEFVPDF+ Sbjct 121 GVGASVVNALSSSFKVWVFRQNKKYFLSFSDGGKVIGDLVQEGNSEKEHGTIVEFVPDFS 180 Query 181 VMEKSDYKQTVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNNEK 240 VMEKSDYKQTVI SRLQQLAFLNKGI+IDFVD R+QNPQSFSWKYDGGLV+YIHHLNNEK Sbjct 181 VMEKSDYKQTVIVSRLQQLAFLNKGIRIDFVDNRKQNPQSFSWKYDGGLVEYIHHLNNEK 240 Query 241 EPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVE 300 EPLF ++I EKT+TVK+V+RDE+YT+KVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVE Sbjct 241 EPLFNEVIADEKTETVKAVNRDENYTVKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVE 300 Query 301 GFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLGNT 360 GFRNALVKIINRFAVENKFLK++DEKI RDD+CEGLTAIISIKHPNPQYEGQTKKKLGNT Sbjct 301 GFRNALVKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNPQYEGQTKKKLGNT 360 Query 361 EVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSL 420 EVRPLVNS+VSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSL Sbjct 361 EVRPLVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSL 420 Query 421 PGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQIFN 480 PGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKS+FEQIFN Sbjct 421 PGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSNFEQIFN 480 Query 481 NVEISALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPLVEQ 540 N EISALVMA+GCGIKPDFELEKLRY+KI+IMTDADVDGAHIRTLLLTFFFRFMYPLVEQ Sbjct 481 NAEISALVMAIGCGIKPDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFRFMYPLVEQ 540 Query 541 GNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLWETT 600 GNI+IAQPPLYKVSYS+KDLYM TDVQLE+WK Q+PN+K+ LQRYKGLGEMDA+QLWETT Sbjct 541 GNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQNPNVKFGLQRYKGLGEMDALQLWETT 600 Query 601 MDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEQNARNVKNIDI 650 MDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIE+NAR+VKNIDI Sbjct 601 MDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEKNARSVKNIDI 650 >gi|12045055|ref|NP_072865.1| topoisomerase IV subunit B (parE) [Mycoplasma genitalium G-37] Length=633 Score = 550 bits (1416), Expect = 0.0, Method: Compositional matrix adjust. Identities = 296/638 (46%), Positives = 416/638 (65%), Gaps = 22/638 (3%) Query 10 YDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFASTVKLTLKD 69 Y +++IKIL+GL+AV+KRPGMYIGST +GLHHM+WEI+ NS+DE + G+A+ + +TL Sbjct 5 YSATNIKILKGLDAVKKRPGMYIGSTDSKGLHHMLWEILANSVDEVLAGYATNITVTLDL 64 Query 70 NFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLHGVGASVVNA 129 N V DDGRGIP +IH +N ST++TVFT LHAGGKFD+ SYK++GGLHGVGASVVNA Sbjct 65 NNTITVSDDGRGIPYEIHQDSNISTIDTVFTFLHAGGKFDDQSYKLAGGLHGVGASVVNA 124 Query 130 LSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPDFTVMEKSDYKQ 189 LS +V V R Q Y + GG++I G HGT V F D V +K+ + Sbjct 125 LSDHLEVTVKRNGQIYQSVYQAGGKIIQKAKKIGDT-TSHGTTVSFHADPKVFKKAQFDS 183 Query 190 TVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNNEKEPLFEDIIF 249 +I SRL++L+FL +++ F D++ F GLVQ++ +NN E L Sbjct 184 NIIKSRLKELSFLFAKLKLTFTDQKTNKTTVFF--STSGLVQFLDEINNTVETL------ 235 Query 250 GEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKI 309 G+KT + + E I+VEV FQ+N++ ++I SF N+I T EGG+H GF A+ + Sbjct 236 GQKT-----LIKGEKDGIEVEVVFQFNQSDQETILSFANSIKTFEGGSHENGFCLAISDV 290 Query 310 INRFAVENKFLKETDEKITRDDICEGLTAIISIKHP--NPQYEGQTKKKLGNTEVRPLVN 367 IN + + LKE D+ +I +GL AII + P N +EGQTK KL + EV+ +V Sbjct 291 INSYCRKYNLLKEKDKNFQLSEIRQGLNAIIKVNLPEKNIAFEGQTKSKLFSKEVKNVVY 350 Query 368 SIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRR-KSPFDSGSLPGKLAD 426 +V + + +F+ N +A II K L A++ + + ++ REL + SP L GKLA Sbjct 351 ELVQQHYFQFLERNNNDAKLIIDKLLNARKIKEQIKQQRELKKSLSSPQKEKILFGKLAP 410 Query 427 CTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK-SHFEQIFNNVEIS 485 C T+ S EL+IVEGDSAGGTAK GRDR FQAILPLRGK+LNVEK ++ ++ N EI Sbjct 411 CQTKKTSEKELFIVEGDSAGGTAKMGRDRIFQAILPLRGKVLNVEKINNKKEAITNEEIL 470 Query 486 ALVMAVGCGIKPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGNIYI 545 L+ +G GI +F ++ L+Y KIIIMTDAD DGAHI+ LLLTFF+R+M PL+E G++Y+ Sbjct 471 TLIFCIGTGILTNFNIKDLKYGKIIIMTDADNDGAHIQILLLTFFYRYMQPLIELGHVYL 530 Query 546 AQPPLYKVSYSNKDL--YMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLWETTMDP 603 A PPLYK+ ++ Y+ +D++LE K + N + LQRYKGLGEM+A QLW+TTM+P Sbjct 531 ALPPLYKLETKDRKTVKYLWSDLELESVKLKLNN--FTLQRYKGLGEMNADQLWDTTMNP 588 Query 604 KVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEQN 641 R L++V ++D A+K ++ MG++ R+ +IE N Sbjct 589 TTRKLVQVKLDDLINAEKQINIFMGEKSDLRKHWIEAN 626 Lambda K H a alpha 0.317 0.135 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 79869230 Query= gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129] Length=839 Score E Sequences producing significant alignments: (Bits) Value gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (gyrA) [Mycopla... 1452 0.0 gi|12045056|ref|NP_072866.1| topoisomerase IV, subunit A (parC) [... 378 7e-121 >gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (gyrA) [Mycoplasma genitalium G-37] Length=836 Score = 1452 bits (3760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 719/839 (86%), Positives = 776/839 (92%), Gaps = 3/839 (0%) Query 1 MAKQQDQIDKIRQELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRV 60 MAKQQDQ+DKIR+ L S +K+ISL++ELERSFMEYAMSVIVARALPDARDGLKPVHRRV Sbjct 1 MAKQQDQVDKIRENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRV 60 Query 61 LYGAYTGGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGN 120 LYGAY GGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGN Sbjct 61 LYGAYIGGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGN 120 Query 121 FGSIDGDRPAAQRYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLA 180 FGSIDGDRPAAQRYTEARLSKLA ELL+DIDKDTVDF+ANYDGEE+EPTVLPAAFPNLLA Sbjct 121 FGSIDGDRPAAQRYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLA 180 Query 181 NGSSGIAVGMSTSIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKG 240 NGSSGIAVGMSTSIPSHNLSELI GLI+LIDNP CT +LL VIKGPDFPTGANIIYTKG Sbjct 181 NGSSGIAVGMSTSIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKG 240 Query 241 IESYFETGKGNVVIRSKVSIEQLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIA 300 IESYFETGKGNVVIRSKV IEQL TR+ALVVTEIPYMVNKT+LIEKIVELVKAEEI+GIA Sbjct 241 IESYFETGKGNVVIRSKVEIEQLQTRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIA 300 Query 301 DIRDESSREGIRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQA 360 DIRDESSREGIRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAP LLNMKQA Sbjct 301 DIRDESSREGIRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQA 360 Query 361 LTVYLEHQLDVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEAL 420 L VYL+HQ+DVL+RKT+F L K QER+HILSGLLIAALNIDEV+AIIKKSANNQ A+ L Sbjct 361 LEVYLDHQIDVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTL 420 Query 421 HERFGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKE 480 + +F LDEIQA+AVLDMRLRSLSVLEVNKLQTEQ+ELK IEFC++VLAD++LQLK+IKE Sbjct 421 NTKFKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKE 480 Query 481 QLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGYLKRIGVDAYNLQHRG 540 +L KIN+QFGD RRSEILY ISE+IDDE LI ENVVITMSTNGYLKRIGVDAYNLQHRG Sbjct 481 ELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGYLKRIGVDAYNLQHRG 540 Query 541 GVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLI 600 GVGVKGLTTY DDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP GFRTNKGIPAVNLI Sbjct 541 GVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLI 600 Query 601 KIDKDEKICALISVNDYQNGYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFS 660 KI+KDE+IC+L+SVN+Y +GYFFFCTKNG +KRTSL+EF NILS GKRAI F +ND L+S Sbjct 601 KIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKRAISFDDNDTLYS 660 Query 661 VIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQCEFVNGLSTSSNGSLL 720 VI+T G D+IFIGST GFVVRFHE+ +R LSR A GV GI+LN+ EFVNGLSTSSNGSLL Sbjct 661 VIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGVFGISLNKGEFVNGLSTSSNGSLL 720 Query 721 LSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTAKTGPVVTTTTVFGNEDLLMISSAGKI 780 LSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVT +TGPVVTTTTVFGNEDLLMISSAGKI Sbjct 721 LSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDRTGPVVTTTTVFGNEDLLMISSAGKI 780 Query 781 VRISLEQLSEQRKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTTATETDDVGSKQITQ 839 VR SL++LSEQ KNTSGVKLI+LK+ ERLE VTIFK+E K + +DVGSKQITQ Sbjct 781 VRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKEELEDK---EMQLEDVGSKQITQ 836 >gi|12045056|ref|NP_072866.1| topoisomerase IV, subunit A (parC) [Mycoplasma genitalium G-37] Length=781 Score = 378 bits (971), Expect = 7e-121, Method: Compositional matrix adjust. Identities = 234/712 (33%), Positives = 387/712 (54%), Gaps = 32/712 (4%) Query 8 IDKIRQELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTG 67 +D+ L Q AI+ + SF +YA +I RALPD RDGLKPV RR+LYG + Sbjct 1 MDQKNNNLFQKAIEEV-----FAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQM 55 Query 68 GMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGD 127 G+ P+KKSAR VG++M K+HPHGD +IYD + RM+Q + + + HGN GS+DGD Sbjct 56 GLKPTTPYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGD 115 Query 128 RPAAQRYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIA 187 AA RYTE RLS ELL+DIDK V F+ N+D E+EPTVLP PNL NG+SGIA Sbjct 116 NAAAMRYTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIA 175 Query 188 VGMSTSIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFET 247 G +T+I HN +EL+ L L ID P+C + +L ++KGPDFPTG N+ + K + ++ Sbjct 176 AGYATNIAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQA 235 Query 248 GKGNVVIRSKVSIEQLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESS 307 GKG +I++K + + + +T+IPY K +++++I E++ +++ I + D S Sbjct 236 GKGKFIIQAKYEVNK--NLNQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSD 293 Query 308 REGIRLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEH 367 R GIR++I+ K E ++ LFK T+LQV F +N + P + + L +L+ Sbjct 294 RNGIRIIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKF 353 Query 368 QLDVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLD 427 +++I K ++ L+ +R I+ GL+ A ID++I +I+ + + A E L + F Sbjct 354 CHELIINKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFT 413 Query 428 EIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINE 487 QA A++ +RL L+ ++ +L EQ EL+ + +Q++A ++ + KL+K+Q + Sbjct 414 FNQAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKK 473 Query 488 QFGDPRRSEILYGISE-DIDDEDLITQEN--VVITMSTNGYLKRIGVDAYNLQHRGGVGV 544 QF RRS+I I++ +++ +LI + V+IT + N + + + Sbjct 474 QFHQQRRSQICGFINQKKVEESELIENKTYGVLITKAGNYH-----------KFESNQLL 522 Query 545 KGLTTYTDDSISQLLVCS-THSDLLFF-TDKGKVYRIRAHQIPPGFRTNKGIPAVNLIK- 601 K T + +S + + + ++D +F T G + I +++ F + + ++ K Sbjct 523 KSTTDFKSESDTIIFAQTIANTDQIFIVTSLGNIINIPVYKL--AFNSKNKLASLVSKKP 580 Query 602 -IDKDEKICALISVNDYQNGYFFFCTKNGTIKRTSLSEFANILSI-GKRAILFKENDVLF 659 + + E I + ++N +K G +KR L++ NI + I ++ D L Sbjct 581 ILLEYETIVFVGTMNSVNQPILVLTSKLGMVKRIDLTKL-NIKPLKATLCISLRDKDHLV 639 Query 660 SVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINL---NQCEFV 708 S I + S + FH + + +S MGV G+ L +Q +FV Sbjct 640 SAFLQQDDKLICLVSDHNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFV 691 Lambda K H a alpha 0.318 0.136 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 105152697 Query= gi|13507744|ref|NP_109693.1| seryl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=420 Score E Sequences producing significant alignments: (Bits) Value gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (serS) [Mycopl... 697 0.0 >gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (serS) [Mycoplasma genitalium G-37] Length=417 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/416 (79%), Positives = 371/416 (89%), Gaps = 0/416 (0%) Query 1 MLDRNKLRNNLDFFKKKLVERGVSESQFEAYVQADKAMRKLLHQIELANQKQTLLAQQVA 60 MLD NKLRNN DFFKKKL+ER V+E ++Q DK MRK L Q+ELANQKQ+LLA+QVA Sbjct 1 MLDPNKLRNNYDFFKKKLLERNVNEQLLNQFIQTDKLMRKNLQQLELANQKQSLLAKQVA 60 Query 61 KKKGDPKLLKESKELKQKLEQLNIAFKEAETLSQELLLNLPNIADESVPVGRDETANLEL 120 K+K + KLL ESKELKQK+E LN A+K+++ +SQ+LLLN PNIA ESVPVG++E+ANLEL Sbjct 61 KQKDNKKLLAESKELKQKIENLNNAYKDSQNISQDLLLNFPNIAHESVPVGKNESANLEL 120 Query 121 LKEGRKPVFDFTPLPHWELCERLQLVAFDKATKLTGARFVAYTDKAAKLLRAIASLMIDL 180 LKEGRKPVFDF PLPH ELCE+L LVAFDKATK++G RFVAYTDKAAKLLRAI +LMIDL Sbjct 121 LKEGRKPVFDFKPLPHRELCEKLNLVAFDKATKISGTRFVAYTDKAAKLLRAITNLMIDL 180 Query 181 NKNKYQEWNVPVIVNETSLTGTGQLPKFKDDVFKLENTRYYLSPTLEVQLANLHANEIFT 240 NK+KYQEWN+PV++NE SL TGQLPKFKDDVFKLENTRYYLSPTLEVQL NLHANEIF Sbjct 181 NKSKYQEWNLPVVINELSLRSTGQLPKFKDDVFKLENTRYYLSPTLEVQLINLHANEIFN 240 Query 241 EGELPKYYTATGVNFRQEAGSAGKQTKGTIRLHQFQKVELVKFCKPSEAIHELEEMTRDA 300 E +LPKYYTATG+NFRQEAGSAGKQTKGTIRLHQFQK ELVKFCKP AI+ELE M RDA Sbjct 241 EEDLPKYYTATGINFRQEAGSAGKQTKGTIRLHQFQKTELVKFCKPENAINELEAMVRDA 300 Query 301 EQILLELKIPFRRLLLCSGDMGFSAQKTYDLEVWMAGCNEYREVSSCSSCGDFQARRAMI 360 EQIL LK+PFRRLLLC+GDMGFSA+KTYDLEVWMA NEYREVSSCSSCGDFQARRAMI Sbjct 301 EQILKALKLPFRRLLLCTGDMGFSAEKTYDLEVWMAASNEYREVSSCSSCGDFQARRAMI 360 Query 361 RYKDLTTGKNTYVATLNGTALAIDRIFAAILEHYQTKAGEVMIPQALLKYLDFDKI 416 RYKD+ GKN+YVATLNGTAL+IDRIFAAILE++QTK G+++IPQAL KYLDFD I Sbjct 361 RYKDINNGKNSYVATLNGTALSIDRIFAAILENFQTKDGKILIPQALKKYLDFDTI 416 Lambda K H a alpha 0.318 0.133 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 48787159 Query= gi|13507745|ref|NP_109694.1| thymidylate kinase [Mycoplasma pneumoniae M129] Length=210 Score E Sequences producing significant alignments: (Bits) Value gi|12044856|ref|NP_072666.1| thymidylate kinase (tmk) [Mycoplasma... 280 1e-98 >gi|12044856|ref|NP_072666.1| thymidylate kinase (tmk) [Mycoplasma genitalium G-37] Length=210 Score = 280 bits (715), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 129/208 (62%), Positives = 168/208 (81%), Gaps = 0/208 (0%) Query 1 MKQGVFVAIEGVDGAGKTVLLEAFKQRFPQSFLGFKTLFSREPGGTPLAEKIRALLLHEA 60 M +GVFV IEGVDGAGKT L+E FK+ +P FL ++ ++REPGGT LAEKIR LLL+E Sbjct 1 MNKGVFVVIEGVDGAGKTALIEGFKKLYPTKFLNYQLTYTREPGGTLLAEKIRQLLLNET 60 Query 61 MEPLTEAYLFAASRTEHVRQLIQPALQQKQLVIVDRFVWSSYAYQGLIKKVGLDVVKKLN 120 MEPLTEAYLFAA+RTEH+ +LI+PA++++QLVI DRFV+SS+AYQGL KK+G+D VK++N Sbjct 61 MEPLTEAYLFAAARTEHISKLIKPAIEKEQLVISDRFVFSSFAYQGLSKKIGIDTVKQIN 120 Query 121 ADAVGDSMPDFTFIVDCDFETALNRMAKRGQDNLLDNTVKKQADFNTMRQYYHSLVDNKR 180 A+ + MP+FTFI+DC+F+ AL RM KRG DNLLD +K + DF+T+R YY SLVD K Sbjct 121 HHALRNMMPNFTFILDCNFKEALQRMQKRGNDNLLDEFIKGKNDFDTVRSYYLSLVDKKN 180 Query 181 VFLLDGQNQTGCLEQFIEQLSQCLTQPT 208 FL++G N+ LE+FIE L++CL QPT Sbjct 181 CFLINGDNKQEHLEKFIELLTRCLQQPT 208 Lambda K H a alpha 0.322 0.137 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20520643 Query= gi|13507746|ref|NP_109695.1| similar to DNA-polymerase subunits [Mycoplasma pneumoniae M129] Length=253 Score E Sequences producing significant alignments: (Bits) Value gi|12044857|ref|NP_072667.1| hypothetical protein MG007 [Mycoplas... 295 4e-103 >gi|12044857|ref|NP_072667.1| hypothetical protein MG007 [Mycoplasma genitalium G-37] Length=254 Score = 295 bits (754), Expect = 4e-103, Method: Compositional matrix adjust. Identities = 132/254 (52%), Positives = 190/254 (75%), Gaps = 1/254 (0%) Query 1 MFNPTHALLIIQRRGSYLQPVLTEYLTRVVCEQQTGCQTCPSCLEILHGTYNNFYSFDQA 60 M THALLIIQR+GS+L+P L YLT +VCE + GC+ C +CLEIL+ YN+ Y FDQ Sbjct 1 MLTTTHALLIIQRKGSFLKPFLDNYLTSIVCENKNGCKKCINCLEILNNKYNSLYWFDQI 60 Query 61 NPFKREHALHLSEVLNRQSES-NQKQLYLIKNLETLTATAMNSLLRLIEEHPVNTYGVFT 119 NPFKRE+AL L+ + NR+ S N K +YLI+ +E L++ ++NSLLRL+E+ P+N+YG+FT Sbjct 61 NPFKRENALQLARIFNRERTSVNNKNIYLIEEIEKLSSNSINSLLRLVEDSPINSYGIFT 120 Query 120 TKNENMILPTILSRVQKVVLKKATQLPFQVDSKDQAILKSFFSVDEQLQALDNGSFTRLK 179 TKNE++IL T LSRVQKVVLKKA+++PF+V DQ I+ SFF+VDEQ++A++NGSF R K Sbjct 121 TKNESLILSTFLSRVQKVVLKKASKVPFKVSKNDQEIITSFFTVDEQIEAIENGSFNRFK 180 Query 180 TIITTLTNKKNTASTVHEAWVLFKQLNQTETAQVLNFMVDYTKDLTKKDRLLNMVQNLVF 239 I+ NKK ++ AW +F+ + +E AQ++ +++ T+++ KK L N ++ L + Sbjct 181 IILDACLNKKTGTEQIYHAWQIFRDFSNSEIAQLITLIINKTENIDKKSILFNCLKVLPY 240 Query 240 NPPKAALFANLINW 253 NPPK+ LFANL++W Sbjct 241 NPPKSTLFANLVSW 254 Lambda K H a alpha 0.320 0.132 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26458145 Query= gi|13507747|ref|NP_109696.1| thiophene and furan oxidation protein [Mycoplasma pneumoniae M129] Length=442 Score E Sequences producing significant alignments: (Bits) Value gi|12044858|ref|NP_072668.1| thiophene and furan oxidation protei... 573 0.0 gi|12045187|ref|NP_072998.1| conserved hypothetical GTP-binding p... 66.2 2e-13 >gi|12044858|ref|NP_072668.1| thiophene and furan oxidation protein (tdhF) [Mycoplasma genitalium G-37] Length=442 Score = 573 bits (1478), Expect = 0.0, Method: Compositional matrix adjust. Identities = 282/442 (64%), Positives = 357/442 (81%), Gaps = 0/442 (0%) Query 1 MDTKQTMFALATAPFNSAIHIIRLSGPDVYRIINQITNKEVKPLGMRIQRVWLIDHNQKK 60 M ++ +FALATAPFNSA+HIIR SGPDVY I+N+ITNK++ GM+IQR W++D N K+ Sbjct 1 MKSEINIFALATAPFNSALHIIRFSGPDVYEILNKITNKKITRKGMQIQRTWIVDENNKR 60 Query 61 VDDVLLFKFVAPNSYTGEDLIEISCHGSMVIVNEIIGLLLKHGAVQAQPGEFTQRGYLNG 120 +DDVLLFKFV+PNSYTGEDLIEISCHG+M+IVNEI LLLK G V A+PGEFTQR +LNG Sbjct 61 IDDVLLFKFVSPNSYTGEDLIEISCHGNMLIVNEICALLLKKGGVYAKPGEFTQRSFLNG 120 Query 121 KMSLNQAASVNNLVLSPNTTLKDVALNALAGQVDARLEPLVEKLGQLVMQMEVNLDYPEY 180 KMSL QA++VN L+LSPN +KD+ LN LAG++D +LE + +++ QLVMQMEVN+DYPEY Sbjct 121 KMSLQQASAVNKLILSPNLLVKDIVLNNLAGEMDQQLEQIAQQVNQLVMQMEVNIDYPEY 180 Query 181 TDEQRELVTMNQAVVQITQILNQIVVGQDQLQRLKDPFKIAIIGNTNVGKSSLLNALLDQ 240 DEQ EL T+N V I + L +I+ QL++L DPFKIAIIG TNVGKSSLLNALL+Q Sbjct 181 LDEQVELSTLNNKVKLIIEKLKRIIENSKQLKKLHDPFKIAIIGETNVGKSSLLNALLNQ 240 Query 241 DKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQSALEKAGIQKTFGAIKTANLV 300 DKAIVS IKGSTRD+VEGDF LNG+ +KILDTAGIR+H+S LEKAGI+K+F +IK ANLV Sbjct 241 DKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKHKSGLEKAGIKKSFESIKQANLV 300 Query 301 IYLLDARQPEPDPKIIARLKKLKKDFFLVHNKADLVQQSFQVSISAKQKQIQPLVDLLTQ 360 IYLLDA P+ D ++I+ KK KKDFF+ +NK DL+ F+ SISAKQK I+ LVDLLT+ Sbjct 301 IYLLDATHPKKDLELISFFKKNKKDFFVFYNKKDLITNKFENSISAKQKDIKELVDLLTK 360 Query 361 YLHQFYSVEQNQLYLISDWQTILLQKAIAELEHFLIKQQNCLFFDILVVHLRAAHEYILQ 420 Y+++FY ++YLI +WQ IL++K +LE FL +Q+ LFFD+LV HLR A + IL+ Sbjct 361 YINEFYKKIDQKIYLIENWQQILIEKIKEQLEQFLKQQKKYLFFDVLVTHLREAQQDILK 420 Query 421 VLGKNTNYDLINEIFKHFCLGK 442 +LGK+ +DL+NEIF +FCLGK Sbjct 421 LLGKDVGFDLVNEIFNNFCLGK 442 >gi|12045187|ref|NP_072998.1| conserved hypothetical GTP-binding protein [Mycoplasma genitalium G-37] Length=448 Score = 66.2 bits (160), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 57/94 (61%), Gaps = 3/94 (3%) Query 219 KIAIIGNTNVGKSSLLNALLDQDKAIVSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQH 278 + +IG NVGKSSL+N L+ Q++ +VS G+TRD ++ +NG ++DTAGI++ Sbjct 180 RFCVIGKPNVGKSSLINQLVKQNRVLVSNESGTTRDAIDVPLKVNGEKFLLIDTAGIKRK 239 Query 279 ---QSALEKAGIQKTFGAIKTANLVIYLLDARQP 309 +E A KT AI +N+++ ++D +P Sbjct 240 GKINMGIETASYIKTKLAIARSNVILLMVDGSKP 273 Lambda K H a alpha 0.321 0.137 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 51880293 Query= gi|13507748|ref|NP_109697.1| hydrolase [Mycoplasma pneumoniae M129] Length=261 Score E Sequences producing significant alignments: (Bits) Value gi|12044859|ref|NP_072669.1| hypothetical protein MG009 [Mycoplas... 389 5e-140 >gi|12044859|ref|NP_072669.1| hypothetical protein MG009 [Mycoplasma genitalium G-37] Length=262 Score = 389 bits (998), Expect = 5e-140, Method: Compositional matrix adjust. Identities = 176/261 (67%), Positives = 218/261 (84%), Gaps = 0/261 (0%) Query 1 MEYFDAHCHLNCEPLLEQHEKSLANFRLIGLKANVVGTNLTNSQIAVNLAKQHPDLLKAG 60 MEYFDAHCHLNCEPLL + EKS+ANF+LI LKANVVGT+L NS+IAV LAK++PDLLKA Sbjct 1 MEYFDAHCHLNCEPLLSEIEKSIANFKLINLKANVVGTDLDNSKIAVELAKKYPDLLKAT 60 Query 61 VGIHPNDVQLFDLKAAQATLKKLVSTHRSFISCIGEYGFDYHYTKDYITQQEQFFLMQFQ 120 +GIHPNDV L D K + L +L+ +R+FISCIGEYGFDYHYT ++I Q +FF MQF+ Sbjct 61 IGIHPNDVHLVDFKKTKKQLNELLINNRNFISCIGEYGFDYHYTTEFIELQNKFFEMQFE 120 Query 121 LAEQYQLVHMLHVRDVHERIYEVLKRLKPKQPVVFHCFSEDTNTALKLLTLREVGLKVYF 180 +AE +LVHMLH+RD HE+IYE+L RLKP QPV+FHCFS+D N A KLL+L+++ + ++F Sbjct 121 IAETNKLVHMLHIRDAHEKIYEILTRLKPTQPVIFHCFSQDINIAKKLLSLKDLNIDIFF 180 Query 181 SIPGIVTFKNAKNLQAALSVIPTELLLSETDSPYLAPVPFRGKTNWPECVVHTVQTIADI 240 SIPGIVTFKNA+ L AL +IP+ELLLSETDSP+L P PFRGK NWPE VVHTV T+A+I Sbjct 181 SIPGIVTFKNAQALHEALKIIPSELLLSETDSPWLTPSPFRGKVNWPEYVVHTVSTVAEI 240 Query 241 KQVPLAEIKQAIVHNAKKLFW 261 K++ +AE+K+ IV NAKKLFW Sbjct 241 KKIEIAEMKRIIVKNAKKLFW 261 Lambda K H a alpha 0.323 0.137 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27366336 Query= gi|13507749|ref|NP_109698.1| hypothetical protein MPN010 [Mycoplasma pneumoniae M129] Length=131 ***** No hits found ***** Lambda K H a alpha 0.312 0.130 0.353 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10068549 Query= gi|13507750|ref|NP_109699.1| hypothetical protein MPN011 [Mycoplasma pneumoniae M129] Length=231 ***** No hits found ***** Lambda K H a alpha 0.319 0.135 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23534164 Query= gi|13507751|ref|NP_109700.1| hypothetical protein MPN012 [Mycoplasma pneumoniae M129] Length=235 ***** No hits found ***** Lambda K H a alpha 0.315 0.132 0.380 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23883839 Query= gi|13507752|ref|NP_109701.1| hypothetical protein MPN013 [Mycoplasma pneumoniae M129] Length=257 ***** No hits found ***** Lambda K H a alpha 0.306 0.130 0.357 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27030213 Query= gi|13507753|ref|NP_109702.1| hypothetical protein MPN014 [Mycoplasma pneumoniae M129] Length=212 Score E Sequences producing significant alignments: (Bits) Value gi|12044860|ref|NP_072670.1| hypothetical protein MG010 [Mycoplas... 243 6e-84 gi|12045104|ref|NP_072915.1| DNA primase (dnaE) [Mycoplasma genit... 62.8 2e-13 >gi|12044860|ref|NP_072670.1| hypothetical protein MG010 [Mycoplasma genitalium G-37] Length=218 Score = 243 bits (620), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 119/216 (55%), Positives = 159/216 (74%), Gaps = 6/216 (3%) Query 1 MELRNTKLEQLFYIYHRNLK------YRCPMQYLTKRGFNLQDLLSVGGGLAYLGEKQWL 54 M++R +L +LF++YH+NLK Y + YL +RGFNLQD L VGGG+ YL K+WL Sbjct 1 MDVRTERLNELFFVYHKNLKNQSKSKYSRAVNYLKRRGFNLQDFLKVGGGVGYLQNKEWL 60 Query 55 NLSLYNFNNQLVGFLSRKVGFEKKFLYLPINKPPSKSESFLGLKHLPTETNTIYLVEGDF 114 NL LY+F+ L+GFL+RKV ++K+FLY P NKPPSKSE+F+GL+ L + N+IYLVEGDF Sbjct 61 NLPLYSFDGNLIGFLNRKVSYKKEFLYTPFNKPPSKSEAFVGLRELVIKDNSIYLVEGDF 120 Query 115 DWLAFRKGGILNCLPLCGLTLSDKQMKFFQQSKIEKVVLCLDNDFAGKVAAANLERILKN 174 DWLAFRK GILN LPLCGLT+S++Q+++ +Q KI+K+ +C DND AGK A NL+ L Sbjct 121 DWLAFRKAGILNSLPLCGLTISNQQVQWLKQKKIKKIFICFDNDLAGKNGAKNLKEYLTK 180 Query 175 AGFQVKVVQLKGKVKDWNELLLLYPKNWAKALRDHL 210 GF KV+++K KDWN+L LL NW+ L + L Sbjct 181 QGFITKVIEIKAAAKDWNDLFLLNNSNWSAVLTNQL 216 >gi|12045104|ref|NP_072915.1| DNA primase (dnaE) [Mycoplasma genitalium G-37] Length=607 Score = 62.8 bits (151), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/145 (32%), Positives = 69/145 (48%), Gaps = 5/145 (3%) Query 56 LSLYNFNNQLVGFLSRKVGFEKKFLYLPINKPP--SKSESFLGLKHLPTETNTIYLVEGD 113 + +++FN VGF +R V K Y K E L N +++VEG Sbjct 216 IPIHDFNGNPVGFSARSVDNINKLKYKNSADHEFFKKGELLFNFHRLNKNLNQLFIVEGY 275 Query 114 FDWLAFRKGGILNCLPLCGLTLSDKQMKFFQQS--KIEKVVLCLDNDFAGKVAAANLERI 171 FD + L GL L+D Q+K + +++ +VL LDND +G+ A +L Sbjct 276 FDVFTLTNSK-FEAVALMGLALNDVQIKAIKAHFKELQTLVLALDNDASGQNAVFSLIEK 334 Query 172 LKNAGFQVKVVQLKGKVKDWNELLL 196 L N F V++VQ + KDW+EL L Sbjct 335 LNNNNFIVEIVQWEHNYKDWDELYL 359 Lambda K H a alpha 0.323 0.141 0.432 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20807645 Query= gi|13507754|ref|NP_109703.1| hypothetical protein MPN015 [Mycoplasma pneumoniae M129] Length=285 Score E Sequences producing significant alignments: (Bits) Value gi|12044861|ref|NP_072671.1| hypothetical protein MG011 [Mycoplas... 325 4e-114 >gi|12044861|ref|NP_072671.1| hypothetical protein MG011 [Mycoplasma genitalium G-37] Length=287 Score = 325 bits (833), Expect = 4e-114, Method: Compositional matrix adjust. Identities = 164/264 (62%), Positives = 219/264 (83%), Gaps = 2/264 (1%) Query 1 MAKIKLKNRKALVVY-NKTDFDKNKHFAQALVDELNKKKLVGHILLLDDETADHK-HIKN 58 M KIKLKNRKALVVY NK DF+KN+ FA +L+ EL KKKL +LLL+++ + + I Sbjct 1 MGKIKLKNRKALVVYDNKDDFEKNQTFALSLIKELQKKKLNAEVLLLENKDINFEAKINE 60 Query 59 VELIINRSRRIDFLTKHNFLNSFLINPQNIVLVANDKYETYRWLKQHKFLTVDTTIFDPK 118 ELI+NRSR++DFL +N +N+FL+NP N+V +ANDKYETY+WLKQ++FLTV++++ + Sbjct 61 AELILNRSRKVDFLKTNNQINTFLVNPFNVVFIANDKYETYKWLKQNRFLTVNSSLLSKE 120 Query 119 KIKTFPIVIKKRDSYGGEDVHLIQNAEEIKQLPIQNPNEWIVQPFLSIGKVEYRAYILFG 178 IK+FP+++KKR+S+GG+DVHL+ +A+EIK L I+N EWIVQPFLSIG VEYRAYILFG Sbjct 121 TIKSFPVIVKKRNSHGGKDVHLVNSADEIKHLNIENATEWIVQPFLSIGTVEYRAYILFG 180 Query 179 KVLKTIRRTASGDDFRANYSQNAAVDLFKLKWYIKHKIKRIAKKLGHGYYAIDFFLNKYN 238 K++K I++ ++ + F+AN+SQ A V LFKLKW+ K KIK+IAK+L GYYAIDFFLN+YN Sbjct 181 KIIKVIKKISNANQFKANFSQGAEVSLFKLKWFTKRKIKKIAKRLREGYYAIDFFLNRYN 240 Query 239 RIVVNEIEDAAGARALTKMCPDLN 262 R++VNEIEDAAGARAL ++CPDLN Sbjct 241 RVIVNEIEDAAGARALVQLCPDLN 264 Lambda K H a alpha 0.323 0.139 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30787128 Query= gi|13507755|ref|NP_109704.1| similar to ribosomal S6 modification protein [Mycoplasma pneumoniae M129] Length=288 Score E Sequences producing significant alignments: (Bits) Value gi|12044862|ref|NP_072672.1| hypothetical protein MG012 [Mycoplas... 410 2e-147 >gi|12044862|ref|NP_072672.1| hypothetical protein MG012 [Mycoplasma genitalium G-37] Length=287 Score = 410 bits (1053), Expect = 2e-147, Method: Compositional matrix adjust. Identities = 198/287 (69%), Positives = 233/287 (81%), Gaps = 0/287 (0%) Query 1 MKHISAVYNPAFTNIASKLNQTELLKDAAQSLNIQLDFFTCFDINTNQDKTKLPFKSNTI 60 MK I+ VYNPAF I+SKLNQT+LLK+A++ L+I+L FFT FDINT + K LPF SN I Sbjct 1 MKKINVVYNPAFNPISSKLNQTQLLKNASEELDIELKFFTSFDINTTKAKANLPFISNKI 60 Query 61 LFLDKNIALAQWLESVGLRVINSSIAINNADNKALSHAVLAQHPTIKQIPTLIGPQNFRL 120 LF+DKNIALA+WLES G VINSSI INNADNK LSHA++AQ+P IKQI TL+GPQNF Sbjct 61 LFMDKNIALARWLESNGFEVINSSIGINNADNKGLSHAIIAQYPFIKQIKTLLGPQNFDR 120 Query 121 AWYPEKLEQFIEQIKRCFQFPVIVKSIYGSFGDYVFLCKDEQKLRQTLSGLTEQIIVQQY 180 W P L+ FI QIK+ +FPVIVKS++GSFGDYVFLC DEQKLR+TL +Q IVQ+Y Sbjct 121 EWNPVMLDVFINQIKQSMEFPVIVKSVFGSFGDYVFLCLDEQKLRKTLMSFNQQAIVQKY 180 Query 181 IATSNSEAVRVIVVNNQVVGALHTQNEGDFRSNLNKGAVGEPYQLSQEETKLAITISQAM 240 I S E+VRVIVVNN+V+GALHT N DFRSNLNKGA E + L++E+ LA+ IS+ M Sbjct 181 ITCSKGESVRVIVVNNKVIGALHTTNNSDFRSNLNKGAKAERFFLNKEQENLAVKISKVM 240 Query 241 QLFYCGIDFLFDQDRSLIFCEVNSNVQLTKSSMYLKTNLAIQLLASI 287 QLFYCGIDFLFDQDRSLIFCEVN NVQLT+SSMYL TNLAI+LL +I Sbjct 241 QLFYCGIDFLFDQDRSLIFCEVNPNVQLTRSSMYLNTNLAIELLKAI 287 Lambda K H a alpha 0.320 0.134 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30966682 Query= gi|13507756|ref|NP_109705.1| 5,10-methylene-tetrahydrofolate dehydrogenase [Mycoplasma pneumoniae M129] Length=269 Score E Sequences producing significant alignments: (Bits) Value gi|12044863|ref|NP_072673.1| methylenetetrahydrofolate dehydrogen... 366 3e-130 >gi|12044863|ref|NP_072673.1| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (folD) [Mycoplasma genitalium G-37] Length=306 Score = 366 bits (939), Expect = 3e-130, Method: Compositional matrix adjust. Identities = 174/267 (65%), Positives = 215/267 (81%), Gaps = 0/267 (0%) Query 1 MSFDGKQLAHEILLTYKNRDWSQVKLVILQTNNDVSSDAFIRQKMNACNTLGAQSELIKY 60 MSFDGK A IL TYKN DWS+ KLVI+Q N+D SSD+FI+QK+ ACNT+GA+SELIK Sbjct 34 MSFDGKLKAQSILETYKNFDWSKCKLVIIQANDDDSSDSFIKQKLIACNTVGAKSELIKL 93 Query 61 HESVTEKELLEKIQQLNTDPEVTGIILQLPVYPHLKQNKLLKAIDPYKDVDYLTGNCPLP 120 +T+ EL+EKI LN D VTGIILQLPVYPHL +N LL+AI+P KDVD LT N Sbjct 94 SNQITQAELIEKIISLNHDVNVTGIILQLPVYPHLDKNSLLEAINPLKDVDGLTTNHLAE 153 Query 121 IRSCVVEAVLILKEHFHHDFTNKQIVVVGLGVTGGGPIFHYLKETGHQVVGCDKHTPNTM 180 I+ C+VEA++ LKE F+ +F N++IVVVGLG+TGG PI+ +LK +G++V CDK TPNT Sbjct 154 IKPCIVEAIITLKELFNLEFNNQKIVVVGLGITGGKPIYEFLKTSGYKVQACDKDTPNTF 213 Query 181 ELIKTADVVITAIGKPHFFKTTNFKPGVILYDVGVSRNVLNKLCGDIDPNGIEKVAKWWS 240 ELIK+AD+V TAIGK HFF+ NFK GVIL+D+GVSRN NKLCGDI+P GIEK A+WW+ Sbjct 214 ELIKSADIVFTAIGKSHFFQAKNFKKGVILFDIGVSRNKQNKLCGDINPEGIEKKARWWT 273 Query 241 PTPGGVGPFTVLAIMKNLWVLYEAHQR 267 TPGGVGPFTVLAI+KNLW+L+E ++R Sbjct 274 KTPGGVGPFTVLAIIKNLWILHEKNKR 300 Lambda K H a alpha 0.320 0.139 0.424 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28506600 Query= gi|13507757|ref|NP_109706.1| transport ATP-binding protein [Mycoplasma pneumoniae M129] Length=623 Score E Sequences producing significant alignments: (Bits) Value gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein... 948 0.0 gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein... 156 1e-42 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 94.4 3e-23 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 87.8 9e-21 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 72.8 8e-16 gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 73.6 2e-15 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 71.2 4e-15 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 72.0 5e-15 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 70.1 8e-15 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 58.9 8e-11 >gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=623 Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/622 (77%), Positives = 546/622 (88%), Gaps = 0/622 (0%) Query 1 MGLVLKQFNRKIRTALILAPLFTFAQIIIDLIIPSFLASAIAVVFSIVTLKQKEASGEGV 60 MGLVLK+FN KIRTALILAP FTFAQI+IDLIIPSFLASAI+VVFSI LKQ E+ G+ + Sbjct 1 MGLVLKEFNNKIRTALILAPFFTFAQIVIDLIIPSFLASAISVVFSIDKLKQDESGGKTI 60 Query 61 AVDFIAESKLSFQSVQEAQIVLATSVILLALFGLVFGLISIFCASIVAGNTSYFLRRKIF 120 +VDFI + ++F +V+EAQIVLAT+VILLAL GL FGLISI+CAS V+ NTS+ LR+KIF Sbjct 61 SVDFIGGANINFANVREAQIVLATTVILLALCGLFFGLISIYCASYVSANTSFLLRKKIF 120 Query 121 RKIMHITAPSHDQYGSSTLLVRLTNDVYLMEIMTFDFLRLIVRAPFLFIGGLAFAIATNS 180 K+M IT PSHD YGSSTLLVRLTNDVYLME++ FDFLRLI+RAP LFIGGL FA+ TN Sbjct 121 AKLMRITTPSHDHYGSSTLLVRLTNDVYLMEVIAFDFLRLIIRAPLLFIGGLVFAVTTNQ 180 Query 181 DMSISLAITFPLTFLVIGILNKKSTPLFKNNQKSVDQINERVEEDVSGYKVVQSFNLKDT 240 DMSISL ITFPL LVIGILN+KS PLFK NQKSVD+INERVEEDVSGYKV+QSFNL Sbjct 181 DMSISLLITFPLILLVIGILNRKSIPLFKENQKSVDKINERVEEDVSGYKVIQSFNLHSF 240 Query 241 ECLKFKAANARWTKSSTNSLFVNTLNIPFTFFFSSMTIIIALLLVFQLDNSVRVDPLPDN 300 KFK AN W K+ST+SLF+N+LNIPFTFF SS+TIIIALLLVFQLD+SV VDPLP + Sbjct 241 TNNKFKIANEGWKKNSTSSLFINSLNIPFTFFLSSLTIIIALLLVFQLDSSVSVDPLPQD 300 Query 301 AAIRPSIFAFFQYNFYIVLGLILTSLTMVNFTRSRVALGRIKDVLNKPEIQQHVVPDQTV 360 AAIRP+IFAFFQYNFYIVLG ILTSLTMVNF RSRVALGRIKD+L++PEI+ DQ Sbjct 301 AAIRPNIFAFFQYNFYIVLGFILTSLTMVNFNRSRVALGRIKDILSQPEIKTITNKDQKE 360 Query 361 LAPSLEFKNVAFGLGNKENRDFLQDLNFKFEAGKTYGIVGPTGSGKSLIANIIGGLYEPN 420 L P+LEF+N++FGLGNK N +FLQ+L+FKFEA KTYGIVGPTGSGKSLIANIIGGLYEPN Sbjct 361 LLPTLEFRNISFGLGNKNNNNFLQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPN 420 Query 421 QGEIFVGGQSIKTIDSDYLAKMIGIVFQQNILFKGTIASNIKIGLETREDWKHEPDSKKD 480 +GEI +GG+ I++IDS YL++MIGIVFQQNILFKGTI+SNIKIG+ETR DWK++ D +K+ Sbjct 421 EGEILIGGEKIQSIDSLYLSEMIGIVFQQNILFKGTISSNIKIGIETRSDWKNQSDLQKN 480 Query 481 AAMKRAAAIACADTFIEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKPQILVLDDS 540 AMK AA IACADTFIEKFSD+YDH VEQLGKNLSGGQKQRVAIART+ITKP+ILV DDS Sbjct 481 EAMKNAAKIACADTFIEKFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDS 540 Query 541 MSALDALTEKKVRENIANELPGTTKIIISQNINSIKYAHKIMVIDNGRIAGFDSDAKLMQ 600 MSALDALTEKKVRENI N+L TTKIIISQNINSIK+A KI+VIDNGRI GFDSD KLM+ Sbjct 541 MSALDALTEKKVRENIENDLKLTTKIIISQNINSIKHADKILVIDNGRIVGFDSDQKLMK 600 Query 601 SCDIYVKMKQAQKDQGGDFDAV 622 +C +Y KMK++QKD GGDFDAV Sbjct 601 NCSLYQKMKESQKDLGGDFDAV 622 >gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=589 Score = 156 bits (394), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 164/617 (27%), Positives = 276/617 (45%), Gaps = 66/617 (11%) Query 21 LFTFAQIIIDLII----PSFLASAIAVVFSIVTLKQKEASGEGVAVDFIAE--SKLSFQS 74 L+ F I++ ++ P LA + +F I S G AVD I + Sbjct 10 LYVFLCIVLGILYGIANPILLAQGLGFIFPI-------TSSNGRAVDSIYSLIYPTNLNV 62 Query 75 VQEAQIVLATSVILLALFGLVFGLISIFCASIVAGNTSYFLRRKIFRKIMHITAPSHDQY 134 IV T + AL VF + + + T LR K + K+ ++ D Sbjct 63 FIRLTIVSVTVFVAYALI-FVFNVAQNYVGIKLYQQTCATLRWKAYLKMQSMSTSFFDTQ 121 Query 135 GSSTLLVRLTNDVYLMEIM--------TFDFLRLIVRAPFLFIGGLAFAIATNSDMSISL 186 + L+ RLTND+Y ++ + ++ + +F+ L+ IA S ++ Sbjct 122 NNGDLMSRLTNDMYNIDNLFTQAGGQAIQSLFNILTTSVLIFL--LSPVIALISLSILAT 179 Query 187 AITFPLTFLVIGILNKKSTPLFKNNQKSVDQINERVEEDVSGYKVVQSFNLKDTECLKFK 246 ITF FL KKS + Q ++ ++ +EE ++ +KVV L++ F Sbjct 180 LITFSFAFL------KKSKTSYSQVQNNLGDMSGYIEEVLTNHKVVHVLKLQEIMIKDFD 233 Query 247 AANARWTKSSTNSLFVNTLNIPFTFFFSSMTII--IALLLVFQLDNSVRVDPLPDNAAIR 304 N K + NT +I F FS I I L+ + + V+ +P + Sbjct 234 QYNKSMIKPTVRG---NTYSI---FLFSWFGFISNITYLVSISIATAFSVNSIP---SFG 284 Query 305 PSIFAF-FQYNFYIVLGLILTSLTMVNFTRSRVALG-----RIKDVLN----KPEIQQHV 354 S+ + F ++ L I +L + + V LG R+ VL+ K Sbjct 285 ISVINYSFMLSYIASLRQITLALDQIFTLWNLVQLGVVSAERVFKVLDLNVEKDTATIDK 344 Query 355 VPDQTVLAPSLEFKNVAFGLGNKENRDFLQDLNFKFEAGKTYGIVGPTGSGKSLIANIIG 414 +PD + ++ F+NVAFG +++ L +NF + G IVGPTG+GKS I N++ Sbjct 345 LPD---IKGNIRFENVAFGY--NKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLM 399 Query 415 GLYEPNQGEIFVGGQSIKTIDSDYLAKMIGIVFQQNILFKGTIASNIKIGLETREDWKHE 474 Y+P +G+I++ I + + I IV Q + LF GTI NI++G R+D Sbjct 400 KFYKPFEGKIYMDNFEISDVTKKAWREKISIVLQDSFLFSGTIKENIRLG---RQD---- 452 Query 475 PDSKKDAAMKRAAAIACADTFIEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKPQI 534 D + A A A FI + YD + LS G++Q + IAR VI + Sbjct 453 ---ATDDEIIAACKTANAHDFIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNAPV 509 Query 535 LVLDDSMSALDALTEKKVRENIANELPGTTKIIISQNINSIKYAHKIMVIDNGRIAGFDS 594 L+LD++ S++D +EK ++E+I + T IIS ++ I+ A IMVI++G++ + Sbjct 510 LLLDEATSSVDVHSEKLIQESIGRLMKNKTSFIISHRLSIIRDATLIMVINDGKVLEMGN 569 Query 595 DAKLMQSCDIYVKMKQA 611 +LM+ Y ++KQ+ Sbjct 570 HDQLMKQNGFYARLKQS 586 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 94.4 bits (233), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 25/231 (11%) Query 364 SLEFKNVAFGLGNKENRDFLQDLNFKFEAGKTYGIVGPTGSGKSLIANIIGGLYEPNQGE 423 + F NVAF +++L+F G+ IVG GSGKS I+ ++ GL +P GE Sbjct 8 ACSFINVAFSYNE---LPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGE 64 Query 424 IFVGGQSIKTIDSDYLAKMIGIVFQQ--NILFKGTIASNIKIGLETREDWKHEPDSKKDA 481 I + G+++ + YL IGI+FQ N T+ +I GLE + Sbjct 65 IKIFGKTVDFDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGLENK------------- 111 Query 482 AMKRAAAIACADTFIEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKPQILVLDDSM 541 R A D D ++Q NLSGGQKQRVAIA + P I++ D+S Sbjct 112 CFSRQKIKAIIDEVT--LQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDEST 169 Query 542 SALDALTEKKVRE---NIANELPGTTKIIISQNINSIKYAHKIMVIDNGRI 589 + LD +K +++ +A + G I I+ ++ + A K++V++ G++ Sbjct 170 AMLDPKAKKTIKQFMVKLAKQ--GKCVISITHDMEEVTKADKVLVMNEGKL 218 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 87.8 bits (216), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 112/216 (52%), Gaps = 23/216 (11%) Query 383 LQDLNFKFEAGKTYGIVGPTGSGKSLIANIIGGLYEPNQGEIFV-----GGQSIKTIDSD 437 + D ++ F+ + Y I+G +GSGKS + N GL +PNQG+I+V G + K + Sbjct 37 IDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIYIGAKQRKIKNFK 96 Query 438 YLAKMIGIVFQ--QNILFKGTIASNIKIGLETREDWKHEPDSKKDAAMKRAAAIACADTF 495 L K I IVFQ + LFK T+ +I G K+ D+++ AA + Sbjct 97 KLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQSKY--DARQKAAY-----------Y 143 Query 496 IEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKPQILVLDDSMSALDALTEKKVREN 555 +E Y +E+ LSGGQK+RVAIA + +P+IL+ D+ + LD E+++ + Sbjct 144 LEMMGLKYPF-LERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQL 202 Query 556 I--ANELPGTTKIIISQNINSIKYAHKIMVIDNGRI 589 I A + T +I Q N ++ A ++V+ G++ Sbjct 203 IKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKL 238 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 72.8 bits (177), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/231 (29%), Positives = 113/231 (49%), Gaps = 27/231 (12%) Query 367 FKNVAFGLGNKENRDFL-QDLNFKFEAGKTYGIVGPTGSGKSLIANIIGGLYEPNQGEIF 425 FK V + N N + +N K G+ I+G +GSGK+ + ++I L P G+ F Sbjct 55 FKEVCKAVTNGINNQLICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSF 114 Query 426 VGG-QSIKTIDSDYLA---KMIGIVFQQNILFKG-TIASNIKIGLETREDWKHEPDSKKD 480 V G +I D+ A K +G +FQQ L + + NIK+ L ++ + Sbjct 115 VCGTNTICCSDAKLTALRNKNVGYIFQQYGLLRDLDVDDNIKLALPLKKRF--------- 165 Query 481 AAMKRAAAIACADTFIEKFSDTYDHTVEQLGKNLSGGQKQRVAIARTVITKPQILVLDDS 540 + + + +H +++ K LSGGQ+QRVAIAR +I +P+IL D+ Sbjct 166 ---------NNNLEELLERLELKEHRHKKVHK-LSGGQQQRVAIARALIKEPKILFGDEP 215 Query 541 MSALDALTEKKVRENIA--NELPGTTKIIISQNINSIKYAHKIMVIDNGRI 589 A++ KK+ + N GTT +I++ N ++ A +++ I +G+I Sbjct 216 TGAVNIDISKKILQFFVEYNRDKGTTIVIVTHNEKIVELAKRVIKIHDGKI 266 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 73.6 bits (179), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 15/203 (7%) Query 396 YGIVGPTGSGKSLIANIIGGLYEPNQGEIFVGGQSIKTIDS-DYLAKMIGIVFQQNILFK 454 + I+G G+GKS + +I+ GLY+P+ G+IF+G + + S D + IG+V Q L + Sbjct 36 HTILGENGAGKSTLTSILFGLYKPDSGKIFIGEKQVNFKSSKDAVKHKIGMVHQHFKLIE 95 Query 455 G-TIASNIKIGLETREDWKHEPDSKKDAAMKRAAAIACADTFIEKFSDTYDHTVEQLGKN 513 T+ NI +G E+R + P + R + A T +EK+ D ++Q N Sbjct 96 NYTVLDNIILGNESR--FGFLP------LINRKVSEAKIKTIMEKYGIFVD--LKQKVSN 145 Query 514 LSGGQKQRVAIARTVITKPQILVLDDSMSALDALTEKKVRENIAN-ELPGTTKIIISQNI 572 L+ GQ+QRV I + + IL+ D+ + L L + + IAN + G T ++IS + Sbjct 146 LTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIANFKKLGKTIVLISHKL 205 Query 573 NSIK-YAHKIMVIDNGRIAG-FD 593 N IK A V+ G++ G FD Sbjct 206 NEIKQVADTATVLRLGKVVGSFD 228 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 71.2 bits (173), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/203 (29%), Positives = 98/203 (48%), Gaps = 27/203 (13%) Query 359 TVLAPSLEFKNV----AFGLGNKENRDFLQDLNFKFEAGKTYGIVGPTGSGKSLIANIIG 414 V+ + KNV F +N+ L D+N + K ++G +G GKS + Sbjct 71 NVIKKDFDEKNVFEIRNFNFWYNKNKQVLFDINLDIKRNKITALIGKSGCGKSTFIRCLN 130 Query 415 GLYEPNQ-----GEIFVGGQSIKT--IDSDYLAKMIGIVFQQNILFKGTIASNIKIGLET 467 L + N+ G+I+ G++I + I+ L +G+VFQ+ F +I NI G+ Sbjct 131 KLNDLNENTRWTGDIYFLGKNINSGIINDLTLRTSVGMVFQKLTPFNFSIFENIAYGI-- 188 Query 468 REDWKHEPDSKKDAAMKRAAAIACADTFIEKFSDTYDHTVEQLGKN---LSGGQKQRVAI 524 R H ++ + R A I+ A +D + L +N LSGGQ+QR+ I Sbjct 189 RAHGIHNKNAINEIV--RQALISAA---------LWDEVKDNLHRNANTLSGGQQQRLCI 237 Query 525 ARTVITKPQILVLDDSMSALDAL 547 AR + +P +L++D+ SALD++ Sbjct 238 ARAIALQPDVLLMDEPTSALDSI 260 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 72.0 bits (175), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 69/272 (25%), Positives = 128/272 (47%), Gaps = 29/272 (11%) Query 343 DVLNKPEIQQHV--VPDQTVLAPSLEFKNVAFGLGNKENRDFLQDLNFKFEAGKTYGIVG 400 + LN P +Q + DQ ++ +K + G+ L+ ++ ++ I+G Sbjct 213 NWLNSPRQKQQAAQIDDQNIIELKNVYKYITNGITTNA---VLKGVDLAIKSHDFIVILG 269 Query 401 PTGSGKSLIANIIGGLYEPNQGEIFVGGQSIKTID----SDYLAKMIGIVFQQ-NILFKG 455 P+GSGK+ + NII G+ + G + V G ++ ++ + + K +G +FQQ +L Sbjct 270 PSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTKFRQKYVGYIFQQYGLLPNL 329 Query 456 TIASNIKIGLETREDWKHEPDSKKDAAMKRAAAIACADTFIEKFSDTYDHTVEQLGKNLS 515 T+ NI+IG +PD K ++ D +E D ++L LS Sbjct 330 TVRENIEIGANL------QPDPSKRISI---------DALLEAVG--MDSLQKKLPNELS 372 Query 516 GGQKQRVAIARTVITKPQILVLDDSMSALD-ALTEKKVRENIA-NELPGTTKIIISQNIN 573 GGQ+QRV+IAR P ++ D+ ALD +T+ +++ +A + TT II++ N Sbjct 373 GGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMIIVTHNNL 432 Query 574 SIKYAHKIMVIDNGRIAGFDSDAKLMQSCDIY 605 A ++ + +G+I + Q +I+ Sbjct 433 IANLADLVIYVADGKIKSLHRNLNPKQVEEIH 464 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 70.1 bits (170), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 113/236 (48%), Gaps = 37/236 (16%) Query 367 FKNVAFGLGNKENRDFLQDLNFKFEAGKTYGIVGPTGSGKSLIANIIGGLYEPNQGEIFV 426 +KNV +K+ L D++ + G+ I+G +GSGK+ + N+IGG + G V Sbjct 90 WKNV-HNDDSKQEISILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIV 148 Query 427 GGQSIKTIDSD----YLAKMIGIVFQQ-NILFKGTIASNIKIGLETREDWKHEPDSKKDA 481 ++ S+ Y +G V+Q+ N++ + NI I ++ D Sbjct 149 ANCPLEKCTSEQLLTYRKNNLGYVYQRYNLIELLSAYDNIAISQNLIPKYQRRLD----- 203 Query 482 AMKRAAAIACADTFIEKFSDTYD--HTVEQLGKNLSGGQKQRVAIARTVITKPQILVLDD 539 IE+ ++ D + + +SGGQKQRVAIAR +I +P++L+ D+ Sbjct 204 --------------IEELAEKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDE 249 Query 540 SMSALDALTEKKVRENIANELPGTTK------IIISQNINSIKYAHKIMVIDNGRI 589 ALD+ + ENI N L K ++++ +++ + A++I+ I +G+I Sbjct 250 PTGALDSNSA----ENIINLLQTINKTYKQTILMVTHDVSLTRIANRIIKISDGKI 301 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 58.9 bits (141), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 11/89 (12%) Query 508 EQLGKNLSGGQKQRVAIARTVITKPQILVLDDSMSALDALTEKKVRENIANEL------P 561 ++L LSGG KQRVA+AR+++ +P+IL+LD+ +SALDA KVR+N+ EL Sbjct 342 DRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDA----KVRKNLQKELQQIHKKS 397 Query 562 GTTKIIISQNI-NSIKYAHKIMVIDNGRI 589 G T I+++ + ++ + +I+V++ G I Sbjct 398 GLTFILVTHDQEEALVLSDRIVVMNEGNI 426 Lambda K H a alpha 0.323 0.138 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 76112315 Query= gi|13507758|ref|NP_109707.1| transport ATP-binding protein [Mycoplasma pneumoniae M129] Length=634 Score E Sequences producing significant alignments: (Bits) Value gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein... 959 0.0 gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein... 134 1e-34 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 90.1 8e-22 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 77.8 3e-17 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 76.3 2e-16 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 65.5 2e-13 gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 63.9 2e-12 >gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=589 Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/589 (76%), Positives = 525/589 (89%), Gaps = 0/589 (0%) Query 46 VQGRTSSKVLYVMVCAIFGILTGVTNSILLAQGLGFIFPTTNTETDGIQSVYLLVFAHNL 105 ++G S K+LYV +C + GIL G+ N ILLAQGLGFIFP T++ + S+Y L++ NL Sbjct 1 MEGSWSYKLLYVFLCIVLGILYGIANPILLAQGLGFIFPITSSNGRAVDSIYSLIYPTNL 60 Query 106 PVMERLTIVCVTVVVAYILIFSFNVAQNYLGLKLYQEICALLRWKAYLKIQSMSTSFFDT 165 V RLTIV VTV VAY LIF FNVAQNY+G+KLYQ+ CA LRWKAYLK+QSMSTSFFDT Sbjct 61 NVFIRLTIVSVTVFVAYALIFVFNVAQNYVGIKLYQQTCATLRWKAYLKMQSMSTSFFDT 120 Query 166 QNNGDLMSRLTNDVYNINNLYAQVGGQTIQSLFILMTTATILFVLSPVIALISLTVLIAL 225 QNNGDLMSRLTND+YNI+NL+ Q GGQ IQSLF ++TT+ ++F+LSPVIALISL++L L Sbjct 121 QNNGDLMSRLTNDMYNIDNLFTQAGGQAIQSLFNILTTSVLIFLLSPVIALISLSILATL 180 Query 226 IALSFLFLKKARAAYAKVQNNLGDMSGYIEEVLSNHKVVHVLKLQEVMIDNFDKYNRPMV 285 I SF FLKK++ +Y++VQNNLGDMSGYIEEVL+NHKVVHVLKLQE+MI +FD+YN+ M+ Sbjct 181 ITFSFAFLKKSKTSYSQVQNNLGDMSGYIEEVLTNHKVVHVLKLQEIMIKDFDQYNKSMI 240 Query 286 NPTIKANTYAVFIYSWFGFISNITYLASISIATAFSVNNIPSFGVSAINYSFMLSYIAAL 345 PT++ NTY++F++SWFGFISNITYL SISIATAFSVN+IPSFG+S INYSFMLSYIA+L Sbjct 241 KPTVRGNTYSIFLFSWFGFISNITYLVSISIATAFSVNSIPSFGISVINYSFMLSYIASL 300 Query 346 RQTALPLNQIFSLWNLIQLGIVSGERVFKILDLESPQKQATITKLPNIKGNIRFEKVVFG 405 RQ L L+QIF+LWNL+QLG+VS ERVFK+LDL + ATI KLP+IKGNIRFE V FG Sbjct 301 RQITLALDQIFTLWNLVQLGVVSAERVFKVLDLNVEKDTATIDKLPDIKGNIRFENVAFG 360 Query 406 YSADKPILTGIDFSVKHGDIVAIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFEISEVS 465 Y+ DKP LTGI+FSVKHGD+VAIVGPTGAGKSTIINLLMKFYKPF GKIYMDNFEIS+V+ Sbjct 361 YNKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDNFEISDVT 420 Query 466 ETAWREKISIVLQDPFLFSGTIKENIRMGRQDATDEEIIEACKVANAHDFIMRLPQGYNT 525 + AWREKISIVLQD FLFSGTIKENIR+GRQDATD+EII ACK ANAHDFIMRLP+GY+T Sbjct 421 KKAWREKISIVLQDSFLFSGTIKENIRLGRQDATDDEIIAACKTANAHDFIMRLPKGYDT 480 Query 526 FISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMKDKTS 585 +ISNK DYLSVGERQLLTIARAVIRNAPVLLLDEATSS+DVHSEKLIQ+SIGRLMK+KTS Sbjct 481 YISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDVHSEKLIQESIGRLMKNKTS 540 Query 586 FIISHRLSIIRNATLIIVINDGKVLEMGNHEQLMRQNGFYARLKRSAVK 634 FIISHRLSIIR+ATLI+VINDGKVLEMGNH+QLM+QNGFYARLK+S+V+ Sbjct 541 FIISHRLSIIRDATLIMVINDGKVLEMGNHDQLMKQNGFYARLKQSSVR 589 >gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=623 Score = 134 bits (336), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 147/568 (26%), Positives = 260/568 (46%), Gaps = 74/568 (13%) Query 107 VMERLTIVCVTVVVAYILIFSFNVAQNYLGLKLYQEICALLRWKAYLKIQSMSTSFFDTQ 166 V E ++ TV++ + F + Y + LLR K + K+ ++T D Sbjct 75 VREAQIVLATTVILLALCGLFFGLISIYCASYVSANTSFLLRKKIFAKLMRITTPSHDHY 134 Query 167 NNGDLMSRLTNDVYNINNLYAQVGGQTIQSLFI-LMTTATILFVLSPVIAL-------IS 218 + L+ RLTNDVY + + I F+ L+ A +LF+ V A+ IS Sbjct 135 GSSTLLVRLTNDVYLM---------EVIAFDFLRLIIRAPLLFIGGLVFAVTTNQDMSIS 185 Query 219 LTVLIALIALSFLFL-KKARAAYAKVQNNLGDMSGYIEEVLSNHKVVHVLKLQEVMIDNF 277 L + LI L L +K+ + + Q ++ ++ +EE +S +KV+ L + F Sbjct 186 LLITFPLILLVIGILNRKSIPLFKENQKSVDKINERVEEDVSGYKVIQSFNLHSFTNNKF 245 Query 278 DKYNRPMVNPTIKANTYAVFIYS----WFGFISNITYLASI----SIATAFSVNNIPS-- 327 N K +T ++FI S + F+S++T + ++ + ++ SV+ +P Sbjct 246 KIANEGWK----KNSTSSLFINSLNIPFTFFLSSLTIIIALLLVFQLDSSVSVDPLPQDA 301 Query 328 ------FGVSAINYSFMLSYIAALRQTALPLNQIFSLWNLIQLGIVSGERVFKILDLESP 381 F N+ +L +I T + N+ + + LG +I D+ S Sbjct 302 AIRPNIFAFFQYNFYIVLGFILT-SLTMVNFNR-----SRVALG--------RIKDILSQ 347 Query 382 QKQATITK------LPNIKGNIRFEKVVFGYSADKP--ILTGIDFSVKHGDIVAIVGPTG 433 + TIT LP ++ F + FG L + F + IVGPTG Sbjct 348 PEIKTITNKDQKELLPTLE----FRNISFGLGNKNNNNFLQNLSFKFEAYKTYGIVGPTG 403 Query 434 AGKSTIINLLMKFYKPFAGKIYMDNFEISEVSETAWREKISIVLQDPFLFSGTIKENIRM 493 +GKS I N++ Y+P G+I + +I + E I IV Q LF GTI NI++ Sbjct 404 SGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSEMIGIVFQQNILFKGTISSNIKI 463 Query 494 GRQDATD----------EEIIEACKVANAHDFIMRLPQGYNTFISNKTDYLSVGERQLLT 543 G + +D E + A K+A A FI + Y+ + LS G++Q + Sbjct 464 GIETRSDWKNQSDLQKNEAMKNAAKIACADTFIEKFSDSYDHNVEQLGKNLSGGQKQRVA 523 Query 544 IARAVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMKDKTSFIISHRLSIIRNATLIIV 603 IAR +I +L+ D++ S++D +EK ++++I +K T IIS ++ I++A I+V Sbjct 524 IARTLITKPRILVFDDSMSALDALTEKKVRENIENDLKLTTKIIISQNINSIKHADKILV 583 Query 604 INDGKVLEMGNHEQLMRQNGFYARLKRS 631 I++G+++ + ++LM+ Y ++K S Sbjct 584 IDNGRIVGFDSDQKLMKNCSLYQKMKES 611 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 90.1 bits (222), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 119/229 (52%), Gaps = 13/229 (6%) Query 390 LPNIKGNIRFEKVVFGYSADKPILTGIDFSVKHGDIVAIVGPTGAGKSTIINLLMKFYKP 449 LP + F V F Y+ + P++ + FSV G+ V IVG G+GKSTI LL KP Sbjct 2 LPTKQAACSFINVAFSYN-ELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKP 60 Query 450 FAG--KIYMDNFEISEVSETAWREKISIVLQDPF-LFSG-TIKENIRMGRQDATDEEIIE 505 AG KI+ + VS R I I+ Q+P F G T++++I G ++ + Sbjct 61 QAGEIKIFGKTVDFDNVS--YLRNNIGIIFQNPDNQFIGITVEDDIAFGLEN----KCFS 114 Query 506 ACKVANAHDFIMRLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSID 565 K+ D + L + FI + LS G++Q + IA + N +++ DE+T+ +D Sbjct 115 RQKIKAIIDEVT-LQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLD 173 Query 566 VHSEKLIQQSIGRLMKDKTSFI-ISHRLSIIRNATLIIVINDGKVLEMG 613 ++K I+Q + +L K I I+H + + A ++V+N+GK+++ G Sbjct 174 PKAKKTIKQFMVKLAKQGKCVISITHDMEEVTKADKVLVMNEGKLIKQG 222 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 77.8 bits (190), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 28/233 (12%) Query 404 FGYSADKPILTGIDFSVKHGDIVAIVGPTGAGKSTIINLLMKFYK-----PFAGKIYM-- 456 F Y+ +K +L I+ +K I A++G +G GKST I L K + G IY Sbjct 90 FWYNKNKQVLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLG 149 Query 457 DNFEISEVSETAWREKISIVLQD--PFLFSGTIKENIRMG-------RQDATDEEIIEAC 507 N +++ R + +V Q PF FS I ENI G ++A +E + +A Sbjct 150 KNINSGIINDLTLRTSVGMVFQKLTPFNFS--IFENIAYGIRAHGIHNKNAINEIVRQAL 207 Query 508 KVANAHDFIM-RLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDV 566 A D + L + NT LS G++Q L IARA+ VLL+DE TS++D Sbjct 208 ISAALWDEVKDNLHRNANT--------LSGGQQQRLCIARAIALQPDVLLMDEPTSALDS 259 Query 567 HSEKLIQQSIGRLMKDKTSFIISHRLS-IIRNATLIIVINDGKVLEMGNHEQL 618 + I+ I +L + T I++H ++ IR I DG+V+E G +Q+ Sbjct 260 IATNSIELLIQQLKEKFTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQI 312 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 76.3 bits (186), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 68/263 (26%), Positives = 133/263 (51%), Gaps = 34/263 (13%) Query 368 SGERVF------KILDLESPQKQATITKLPNIKGNIRFEKVVFGYSAD----KPILTGID 417 S ER+F K+ L SP+++ ++ + NI K V+ Y + +L G+D Sbjct 199 SNERLFLKNEVKKVNWLNSPRQKQQAAQIDD--QNIIELKNVYKYITNGITTNAVLKGVD 256 Query 418 FSVKHGDIVAIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFE---ISEVSETAWREK-I 473 ++K D + I+GP+G+GK+T++N++ + +G + ++ + +++ T +R+K + Sbjct 257 LAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTKFRQKYV 316 Query 474 SIVLQDPFLFSG-TIKENIRMG---RQDATDEEIIEACKVANAHDFIM-RLPQGYNTFIS 528 + Q L T++ENI +G + D + I+A A D + +LP Sbjct 317 GYIFQQYGLLPNLTVRENIEIGANLQPDPSKRISIDALLEAVGMDSLQKKLP-------- 368 Query 529 NKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDVHSEKLIQQSIGRLMK--DKTSF 586 + LS G++Q ++IARA +N ++ DE T ++D+ +++ + + K T Sbjct 369 ---NELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMI 425 Query 587 IISHRLSIIRNATLIIVINDGKV 609 I++H I A L+I + DGK+ Sbjct 426 IVTHNNLIANLADLVIYVADGKI 448 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 65.5 bits (158), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 113/231 (49%), Gaps = 16/231 (7%) Query 403 VFGYSADKPILTGIDFS--VKHGDIVAIVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFE 460 VF + PI DFS + I I+G +G+GKST++N KP G I++ + Sbjct 25 VFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIY 84 Query 461 ISEVSE-----TAWREKISIVLQDPF--LFSGTIKENIRMGRQDATDEEIIEACKVANAH 513 I R+ ISIV Q P LF T++++I G A + +A + A + Sbjct 85 IGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPV-ALGQSKYDARQKAAYY 143 Query 514 DFIMRLPQGYNTFISNKTDYLSVGERQLLTIARAVIRNAPVLLLDEATSSIDVHSEKLIQ 573 +M L F+ LS G+++ + IA + +L+ DE T+ +D E+ + Sbjct 144 LEMMGL---KYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMM 200 Query 574 QSIGRL-MKDKTSFIISHRL-SIIRNATLIIVINDGKVLEMGN-HEQLMRQ 621 Q I + +T F+I+H++ +++ A +++V+ GK+++ + +E M Q Sbjct 201 QLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMDQ 251 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 63.9 bits (154), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 103/191 (54%), Gaps = 12/191 (6%) Query 428 IVGPTGAGKSTIINLLMKFYKPFAGKIYMDNFEIS-EVSETAWREKISIVLQDPFLFSG- 485 I+G GAGKST+ ++L YKP +GKI++ +++ + S+ A + KI +V Q L Sbjct 38 ILGENGAGKSTLTSILFGLYKPDSGKIFIGEKQVNFKSSKDAVKHKIGMVHQHFKLIENY 97 Query 486 TIKENIRMGRQDATDEEIIEACKVANAHDFIMRLPQGYNTFIS--NKTDYLSVGERQLLT 543 T+ +NI +G + + KV+ A I + + Y F+ K L+VG++Q + Sbjct 98 TVLDNIILGNESRFGFLPLINRKVSEAK--IKTIMEKYGIFVDLKQKVSNLTVGQQQRVE 155 Query 544 IARAVIRNAPVLLLDEAT---SSIDVHSEKLIQQSIGRLMKDKTSFIISHRLSIIRN-AT 599 I + + R++ +L+ DE T S +++ + I + +L KT +ISH+L+ I+ A Sbjct 156 ILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIANFKKL--GKTIVLISHKLNEIKQVAD 213 Query 600 LIIVINDGKVL 610 V+ GKV+ Sbjct 214 TATVLRLGKVV 224 Lambda K H a alpha 0.323 0.136 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 77642910 Query= gi|13507759|ref|NP_109708.1| similar to helicases [Mycoplasma pneumoniae M129] Length=1030 Score E Sequences producing significant alignments: (Bits) Value gi|12044868|ref|NP_072678.1| ATP-dependent RNA helicase, putative... 842 0.0 gi|12044867|ref|NP_072677.1| ATP-dependent RNA helicase, putative... 221 1e-68 gi|12044866|ref|NP_072676.1| ATP-dependent RNA helicase, putative... 151 6e-44 >gi|12044868|ref|NP_072678.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length=600 Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/600 (68%), Positives = 502/600 (84%), Gaps = 2/600 (0%) Query 433 VSLSDNLLHQKPLHFALSDLEAVAVDDKQIKLSFAPSAVELKLIKRILSAYHKGNVVCID 492 + L+ NLL+ K LHF++SD++A+ ++D+Q+K+ F ++LKLIK +LS Y+KGN +CI Sbjct 1 MKLTSNLLNYKQLHFSISDIKALKIEDRQLKIEFKAGGIDLKLIKSVLSNYYKGNAICIG 60 Query 493 QESWYDLKQPAAKELIQFWNQFDLRNATSDGNH-IYLPKYYLFEVAKIFSQYLDIKNLFD 551 ++ WYDL AK LI FW+Q DLRNAT D N+ + L KY+LFEV S+Y D+ NL D Sbjct 61 EDGWYDLNDENAKALISFWSQIDLRNATCDANNNLLLAKYHLFEVVDTISKYTDVTNLLD 120 Query 552 VPTIKKIEDQNNNVFDLSLEHKKITSLRNYQQEGVKWIRGLEENKFGGILADEMGLGKTV 611 T +++ + N F LSL++ +I +LR YQ+EGVKWIR LE+N+FGGILADEMGLGKT Sbjct 121 EKTALQLKIASENQFHLSLDNNQINNLRKYQKEGVKWIRALEDNQFGGILADEMGLGKTA 180 Query 612 QVIFALLDSYLKNHVNLPSLIIVPASLLLNWKSEFEKFAPQIKVKVANIPSKERGELYEK 671 QVIFA+LDSY LPSLIIVPASLLLNWKSEF+KFAP +K+ AN KER ++YE Sbjct 181 QVIFAMLDSYQSTKSLLPSLIIVPASLLLNWKSEFQKFAPHVKIVTANGNFKERSQVYES 240 Query 672 LTNEILIVSFNVLRSDVKLITKQRFHYVVIDEAQGIKNDSSSITKAAKKVKGNFCLALTG 731 L N+IL++SFNVLRSD+K I++++FHYVVIDEAQGIKN++S++TKAAKK+KGNFCLALTG Sbjct 241 LKNQILLMSFNVLRSDIKWISQKKFHYVVIDEAQGIKNENSTVTKAAKKIKGNFCLALTG 300 Query 732 TPIENRLLDLWSCFDFVLPSFLGNKKQFTDQFEKEKTDQSFHLLMQRTSPFILRRTKSKV 791 TPIENRLLDLWSCFDFVLP+FLGNKKQF+DQFEKEK D+SF LM++TSPFILRRTK+KV Sbjct 301 TPIENRLLDLWSCFDFVLPNFLGNKKQFSDQFEKEKNDESFQKLMKKTSPFILRRTKNKV 360 Query 792 LKELPNKITTDIYVELNPMHQKLYEEERDRGLEEIKQIQDKSSFNILTLILKLRHLCSLP 851 LKELP KI TDIYVEL+ HQKLY++++ GL+EIK+ K++ NIL+LILKLRH+CSL Sbjct 361 LKELPKKIITDIYVELSEEHQKLYDKQKTDGLKEIKESDAKNALNILSLILKLRHICSLV 420 Query 852 K-NSQGILENSAKKEAALEIIHEAIENQRKIILFTQFIDVIDHFKDTFKEQGIEYFIFDG 910 K N E+++K AAL II+EA+EN+RK+ILFTQF+DVID FK T K Q I++ +FDG Sbjct 421 KDNDVNDFEDNSKANAALNIIYEALENKRKVILFTQFLDVIDCFKQTLKNQKIDHLVFDG 480 Query 911 RKSPKSRHSIIEKFNNAKNPCVLLASLKAGGVGINLTAAEVVIHFDVWWNTAVENQATDR 970 RK+ K+R++II+KFN+AK PCV+LASLKAGGVGINLTAAEVVIHFDVWWN+AVENQATDR Sbjct 481 RKTVKNRNTIIQKFNSAKEPCVMLASLKAGGVGINLTAAEVVIHFDVWWNSAVENQATDR 540 Query 971 AHRIGQKKTVQVYRIIAKNTIEERVCQVQAEKQELVSKTLVEDVNFFESLTNEELLRLFE 1030 AHRIGQ KTVQVYRIIAKNTIEERVCQVQ +KQELV KTLVEDVNFF+SL++EELL+LFE Sbjct 541 AHRIGQSKTVQVYRIIAKNTIEERVCQVQNQKQELVKKTLVEDVNFFKSLSHEELLKLFE 600 >gi|12044867|ref|NP_072677.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length=176 Score = 221 bits (564), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 109/173 (63%), Positives = 134/173 (77%), Gaps = 0/173 (0%) Query 195 YDRNSLLFPLAGFLKELQANTEPTIFVFNDDKIDNILFLRISKKHHGLNHVCGFSGKKVF 254 Y+ NSLLF L FL ++ +P++F+ N+DK DNILFLR K +GL+HVCGF KVF Sbjct 3 YENNSLLFNLDQFLSLVKEVKKPSLFLLNEDKTDNILFLRSQHKINGLSHVCGFLNNKVF 62 Query 255 DFVTYKQKEKQIVLRSAYLSKFTDFKFPYTINIYKLQFGEPLFFYFLIQLKRDGFKNFYF 314 DFV+Y +K KQIVLR AYL+KFTDFKFPY INIYKL FGE LFF+FLI LK +GFKN +F Sbjct 63 DFVSYNEKTKQIVLRLAYLNKFTDFKFPYNINIYKLAFGETLFFHFLIHLKMNGFKNIFF 122 Query 315 QSEDSIVKEKEYLPKLYFKVEYDPVKNKFVSDAFFKYKNHFNKGTTTVYPHRY 367 QS+ IVKE EYLPK++ +E++ KNKF++DAFFKYKN + TTVYPHRY Sbjct 123 QSDVVIVKESEYLPKMFLTIEFNTQKNKFITDAFFKYKNKNSNTLTTVYPHRY 175 >gi|12044866|ref|NP_072676.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length=168 Score = 151 bits (381), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 75/163 (46%), Positives = 103/163 (63%), Gaps = 1/163 (1%) Query 1 MTIAEIRKFAQTTQKFVEAENLFEHGNVVLPKKYLNKARGMAEVLYNSQVIKVSFTAKDG 60 MT+AEI+K A Q F EA+ L E GNV+ PKK+L + + + EVL + +V KV K Sbjct 1 MTVAEIKKLALNNQVFNEAKALLEKGNVIFPKKFLKRKKIIIEVL-DGKVFKVQINLKTA 59 Query 61 ELTCKCSCLANVDNCVHIVAVLLKYHQMLVESKRSFNLAEAFHLDCDQAEMLIENLSLEI 120 CSC + NCVHI+A LLKY+ + + + F+L +A L+C + E+LIEN+SL I Sbjct 60 AAHLDCSCSNDKQNCVHIIAALLKYNDLKNQDNKEFDLNKADKLECKEVEILIENVSLAI 119 Query 121 IAGGWNFKLGFTINLDKHNPQPSVLRFYCCDATFVYFLHLEND 163 + G W K+GF IN+DK + LRFYCCD VYFLH E++ Sbjct 120 VNGSWKLKIGFVINIDKVQTNTTALRFYCCDNKDVYFLHTEDE 162 Lambda K H a alpha 0.322 0.138 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 130348550 Query= gi|13507760|ref|NP_109709.1| heat shock protein DnaJ [Mycoplasma pneumoniae M129] Length=390 Score E Sequences producing significant alignments: (Bits) Value gi|12044869|ref|NP_072679.1| heat shock protein (dnaJ) [Mycoplasm... 627 0.0 gi|12045052|ref|NP_072862.1| dnaJ-like protein [Mycoplasma genita... 87.0 2e-20 >gi|12044869|ref|NP_072679.1| heat shock protein (dnaJ) [Mycoplasma genitalium G-37] Length=389 Score = 627 bits (1616), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/390 (75%), Positives = 342/390 (88%), Gaps = 1/390 (0%) Query 1 MAAGKRDYYEVLGVSRSATAQDIKRAFRKLAMQYHPDRHKGEGETVQKQNEEKFKEVNEA 60 MAAGKRDYYEVLG+S++A++QDIKRAFRKLAMQYHPDRHK E ET QKQNEEKFKEVNEA Sbjct 1 MAAGKRDYYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEA 60 Query 61 YEVLSDTEKRGMYDRFGHEGLNASGFHETGFNPFDIFNSVFGEGFSFDMDGGSPFDFIFS 120 YEVLSD EKR +YD+FGHEGLNASGFHE GFNPFDIFNSVFGEGFSF MDG SPFDFIF+ Sbjct 61 YEVLSDEEKRKLYDQFGHEGLNASGFHEAGFNPFDIFNSVFGEGFSFGMDGDSPFDFIFN 120 Query 121 RGKKSRQNRVVLPYDLEIAVGVDISFFEMTNGCTRTIEYTKRVTCSACDGFGAEGGETGM 180 R KK RQ ++V+PY+L+IA+ ++I+FFEMTNGC +TI+Y ++V+C +C+GFGAEGGE+G+ Sbjct 121 RSKK-RQQQIVVPYNLDIALVIEINFFEMTNGCNKTIKYERKVSCHSCNGFGAEGGESGL 179 Query 181 VSCNSCEGNGFILKNQRSIFGTVQSQMLCQSCGGQGKQAKHKCKTCKGSKYKKVPTTKEI 240 C C GNGF++KNQRSIFGT+QSQ+LC +C GQGKQ K KCKTC+ +KY KEI Sbjct 180 DLCKDCNGNGFVIKNQRSIFGTIQSQVLCSTCNGQGKQIKVKCKTCRSNKYTVTNQIKEI 239 Query 241 QIPAGIYHGDALVDDHGGNEFGGHVGKLVVHVGVLPSKIFKRVDHNVVANVLVDPMIAIT 300 IPAG+Y G+ALVD+ GGNEF GH GKL++ V VL SKIFKR D+NV+ANVLVDPM+AI Sbjct 240 NIPAGMYSGEALVDESGGNEFKGHYGKLIIQVNVLASKIFKRSDNNVIANVLVDPMVAIV 299 Query 301 GGKIELPTLEGIKEFNLRAGTKSGEQIVIPGGGIKFTKNFRKKAGDLIIIISYARPSEYS 360 GG IELPTLEGIKEFN+R GTKSGEQIVIP GGIKF+K+F++KAGDLIIIISYARP EY+ Sbjct 300 GGVIELPTLEGIKEFNIRPGTKSGEQIVIPNGGIKFSKSFKRKAGDLIIIISYARPCEYT 359 Query 361 APELRKLKEFIKPNQEVKQYLNALKNEYKS 390 EL+KL+EFIKPNQEVKQYLN LKNEYK+ Sbjct 360 NLELKKLREFIKPNQEVKQYLNTLKNEYKT 389 >gi|12045052|ref|NP_072862.1| dnaJ-like protein [Mycoplasma genitalium G-37] Length=601 Score = 87.0 bits (214), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 64/104 (62%), Gaps = 11/104 (11%) Query 1 MAAGKRDYYEVLGVSRSATAQDIKRAFRKLAMQYHPDRHKGEGETVQKQNEEKFKEVNEA 60 MA KRDYYEVLG++ A +IK+AFRKLA +YHPDR+ + F E+NEA Sbjct 1 MAEQKRDYYEVLGITPDADQSEIKKAFRKLAKKYHPDRNNAPDAA------KIFAEINEA 54 Query 61 YEVLSDTEKRGMYDRFGHEGLNASGFHETGFN-PFDIFNSVFGE 103 +VLS+ +KR YD++G +G++ E FN D+F S F E Sbjct 55 NDVLSNPKKRANYDKYGFDGVDG----EPAFNFQADVFQSFFEE 94 Lambda K H a alpha 0.318 0.137 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44863758 Query= gi|13507761|ref|NP_109710.1| proline iminopeptidase [Mycoplasma pneumoniae M129] Length=309 Score E Sequences producing significant alignments: (Bits) Value gi|12044870|ref|NP_072680.1| proline iminopeptidase (pip) [Mycopl... 412 6e-148 >gi|12044870|ref|NP_072680.1| proline iminopeptidase (pip) [Mycoplasma genitalium G-37] Length=308 Score = 412 bits (1060), Expect = 6e-148, Method: Compositional matrix adjust. Identities = 193/309 (62%), Positives = 233/309 (75%), Gaps = 1/309 (0%) Query 1 MNTSPKQSGYLKVGNGHEVYFWTAGNPQGKSALYVHGGPGSGTDAGCLKYFDLDTTYVIL 60 MNT GYL VG+ H++Y+WT GNP GK LY+HGGPGSGTD GCLKYFDL+TT++IL Sbjct 1 MNTKLNVKGYLNVGDNHQLYYWTQGNPNGKPVLYIHGGPGSGTDEGCLKYFDLETTWIIL 60 Query 61 LDQRGCGQSKAVNPLLHNTTQDLVGDLEALRQHLKLERWTLFGGSWGSTLALVYAITHPQ 120 LDQRGCG+SK + N T LV D E LRQ L ++ WTLFGGSWGS LALVYAI HPQ Sbjct 61 LDQRGCGKSKTNDIFYENNTDKLVSDFEILRQKLNIKNWTLFGGSWGSALALVYAIKHPQ 120 Query 121 VVEQVFLRALFLGREQDWAEMLLGLGKLFYPYEHQTLLKAIPQACRTDFTKFTNYFYEVL 180 VV+++FLRALFL RE+DW+E L+GLGK+FYPYEHQ + +IP+A + + + NY Y+ Sbjct 121 VVDKIFLRALFLAREKDWSEALMGLGKMFYPYEHQRFMDSIPKAYQNSYEQIVNYCYDQF 180 Query 181 QGNDSALKTQLANAWVKWENTLLSPISYVKDEKAEDANFTFKLALLECHYAKHHSFLKPN 240 Q D + K +LA AWV WE+TLLSPI+ + A D KLALLECHYA + SFL N Sbjct 181 QNGDESTKEKLAKAWVDWESTLLSPINKIH-STATDFKLVEKLALLECHYAVNKSFLDEN 239 Query 241 FILENVAVLKDKPVHLIHGRFDLVCPLSQALELKRALPTLNLYVTNNAGHSGSDPNNLTT 300 FIL+N++VLK+K ++L HGRFDL+CPL Q L LK+A P L LYVTNNAGHSGSD NNL T Sbjct 240 FILDNISVLKNKSIYLAHGRFDLICPLYQPLALKQAFPELQLYVTNNAGHSGSDANNLAT 299 Query 301 IKHLLKTQL 309 IKHLLKT L Sbjct 300 IKHLLKTYL 308 Lambda K H a alpha 0.320 0.137 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33949711 Query= gi|13507762|ref|NP_109711.1| methionyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=512 Score E Sequences producing significant alignments: (Bits) Value gi|12044871|ref|NP_072681.1| methionyl-tRNA synthetase (metS) [My... 773 0.0 >gi|12044871|ref|NP_072681.1| methionyl-tRNA synthetase (metS) [Mycoplasma genitalium G-37] Length=512 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/512 (71%), Positives = 428/512 (84%), Gaps = 0/512 (0%) Query 1 MKRCYITTPIYYASGKPHIGHAFTTILADVIKRYKQQNGYEAYFLTGTDEHGNKIESKAK 60 MKRCYITTPIYYASGKPHIGHAFTTILADVIKR+K QNGYEA+ L G+DEHGNKIESKAK Sbjct 1 MKRCYITTPIYYASGKPHIGHAFTTILADVIKRFKIQNGYEAFLLVGSDEHGNKIESKAK 60 Query 61 SLGLDPQTFVDQNVAYFQQMWKQLDINFDHFIRTTDLSHKAQVQHAFQLLYDKGLIYQSN 120 SL LDP+TFVD N F+ MWK L+I+FDHFIRTTD HK QVQ FQ LYDK LIYQS Sbjct 61 SLNLDPKTFVDINAQAFKLMWKTLNISFDHFIRTTDEIHKQQVQKTFQDLYDKKLIYQSE 120 Query 121 WEGAYCVECEQNYFTYDKQTMLCEIGHQLTLVQEPSLFIAFKDSKDWIGEMIATNKLNIT 180 W+GAYCVECEQNYFT++KQTMLCEIGH L+LVQEP FI+F +K+WI I N+LNI Sbjct 121 WKGAYCVECEQNYFTFNKQTMLCEIGHNLSLVQEPCWFISFSSTKNWIETTIGKNQLNII 180 Query 181 PESRAAELKNNFLDGGLNDLALTRQNVTWGIPVPFDNKQTIYVWFDALFNYITNLGFAHN 240 P+SRA+ELKNNF++ GLNDLALTR+NVTWGI VPFD QTIYVWFDALF+YITNLGF + Sbjct 181 PKSRASELKNNFINNGLNDLALTRKNVTWGIKVPFDPNQTIYVWFDALFSYITNLGFRNG 240 Query 241 DPKFNKWWNNNDEEHEVIHLISREITRFHCIYWPIFLHQLGFKLPTQFLSHGWIVDGNGH 300 DP F KWWNN+++E EVIHLISREITRFHCIYWPIFLH L KLPTQFLSHGWIVDG G Sbjct 241 DPNFIKWWNNDNKEREVIHLISREITRFHCIYWPIFLHLLDIKLPTQFLSHGWIVDGEGR 300 Query 301 KMSKSLGNVISPEELLAQFGVDGTRYCLLKEMRLDKDNRCSMAIFKDIYNADLANSFGNH 360 KMSKSL NVISPE+L+ QFGVDGTRYCLLKEMRLDKDNRCS++I K+IYNADLANSFGNH Sbjct 301 KMSKSLNNVISPEQLIDQFGVDGTRYCLLKEMRLDKDNRCSVSILKEIYNADLANSFGNH 360 Query 361 ASRTFGMIKKYLGGQLDFIEVQDPQVKQLMDQANQAMVQFDTAWNNFQFYKGINGLLQLV 420 SRTFGMIKKYL G+L++ + D ++++M ++++VQFD +N+++FY+ IN LL++V Sbjct 361 VSRTFGMIKKYLNGKLEYQIITDNALQKIMILIDESIVQFDHYFNSYEFYRAINLLLKIV 420 Query 421 FQASKLIDQLKPWELVKQTDYTLLKQLLFACVRCTQVCFVLLAPILVHTSTQIFDLFNFS 480 F+ SKLID KPWEL K +++LLKQLLF CVRC QVC+VLL PILV+T++++F LFNF+ Sbjct 421 FELSKLIDDFKPWELFKNQEFSLLKQLLFTCVRCVQVCYVLLTPILVNTASKVFHLFNFA 480 Query 481 AQARSKTHLADPQQLQKISLAPVIQPLFKRLD 512 A K L D L+KI ++ ++ LFKR+D Sbjct 481 DDACRKDQLRDATLLKKIIISNSMEVLFKRVD 512 Lambda K H a alpha 0.323 0.138 0.433 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 61369494 Query= gi|13507763|ref|NP_109712.1| DNA-directed RNA polymerase delta subunit [Mycoplasma pneumoniae M129] Length=146 Score E Sequences producing significant alignments: (Bits) Value gi|12044872|ref|NP_072682.1| DNA-directed RNA polymerase, subunit... 246 3e-87 >gi|12044872|ref|NP_072682.1| DNA-directed RNA polymerase, subunit delta (rpoE) [Mycoplasma genitalium G-37] Length=145 Score = 246 bits (627), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 123/145 (85%), Positives = 131/145 (90%), Gaps = 1/145 (1%) Query 3 MQVEYLDLISQAKEIAETQFKAEPFSFDAIWKEVVKHFKISKQDEPNLISRFYQDFLEDP 62 MQ+EYL+LISQAK IAE QFKA PFSF+ IWKEVVKHFKISKQDEP+LI RFYQDFLEDP Sbjct 1 MQLEYLNLISQAKVIAEKQFKANPFSFETIWKEVVKHFKISKQDEPSLIGRFYQDFLEDP 60 Query 63 NFVYLGERNWKLRDFMKFDEWNKISQAMFVTKEIFEEGYEDLSNKKKENEEEVNDFIMGN 122 NFVYLG+R WKLRDFMKFDEWNKISQ+MFVTKEIFEEGYEDLSNKK E EE V DFIMGN Sbjct 61 NFVYLGDRKWKLRDFMKFDEWNKISQSMFVTKEIFEEGYEDLSNKKVEPEEGVGDFIMGN 120 Query 123 DGDDNSTGDEIVQGLIND-FRDDNQ 146 DGDDN TG EIVQGLIND F ++NQ Sbjct 121 DGDDNETGSEIVQGLINDSFSEENQ 145 Lambda K H a alpha 0.316 0.135 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12071271 Query= gi|13507764|ref|NP_109713.1| fructose-bisphosphate aldolase [Mycoplasma pneumoniae M129] Length=288 Score E Sequences producing significant alignments: (Bits) Value gi|12044873|ref|NP_072683.1| fructose-bisphosphate aldolase (fba)... 474 9e-173 >gi|12044873|ref|NP_072683.1| fructose-bisphosphate aldolase (fba) [Mycoplasma genitalium G-37] Length=288 Score = 474 bits (1219), Expect = 9e-173, Method: Compositional matrix adjust. Identities = 224/288 (78%), Positives = 254/288 (88%), Gaps = 0/288 (0%) Query 1 MLVNIKQMLQHAKQHHYAVPHININNYEWAKAVLTAAQQAKSPIIVSTSEGALKYISGHQ 60 MLVN K MLQ AK YA+PHININNYEWAKAVLTAA QA SPIIVS SEGALKY+SG+ Sbjct 1 MLVNFKLMLQKAKLGKYAIPHININNYEWAKAVLTAANQANSPIIVSVSEGALKYMSGYS 60 Query 61 VVVPMVKGLVDALKITVPVALHLDHGSYEGCKAALQAGFSSIMFDGSHLPFQENFTKSKE 120 VV+P+VKGL+++L + VPV LHLDHGSY+ C ALQAGFSS+MFDGSHLPF+ENF KSK+ Sbjct 61 VVIPLVKGLIESLSVKVPVTLHLDHGSYDACIQALQAGFSSVMFDGSHLPFEENFNKSKK 120 Query 121 LIELAKQTNASVELEVGTLGGEEDGIVGQGELANIEECKQIATLKPDALAAGIGNIHGLY 180 LIE+A++TNASVELEVGT+GGEEDG++GQGELAN++ECKQIA+LKPDALAAGIGNIHG+Y Sbjct 121 LIEIAQKTNASVELEVGTIGGEEDGVIGQGELANVDECKQIASLKPDALAAGIGNIHGIY 180 Query 181 PDNWKGLNYELIEAIAKATNLPLVLHGGSGIPEADVKKAIGLGISKLNINTECQLAFAKA 240 P NWKGLN+ LIE I+K TNLPLVLHGGSGI E DVKKAI LGI KLNINTECQLAFA Sbjct 181 PKNWKGLNFPLIETISKITNLPLVLHGGSGILENDVKKAISLGICKLNINTECQLAFAHE 240 Query 241 IREYVEAKKDLDTHNKGYDPRKLLKSPTQAIVDCCLEKMQLCGSTNKA 288 IR+Y+E+ KDLD + KGYDPRKLLK PTQAIVD CLEK+ LCGS NKA Sbjct 241 IRKYIESNKDLDLNKKGYDPRKLLKEPTQAIVDTCLEKIDLCGSRNKA 288 Lambda K H a alpha 0.315 0.133 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30966682 Query= gi|13507765|ref|NP_109714.1| similar to GTPases [Mycoplasma pneumoniae M129] Length=362 Score E Sequences producing significant alignments: (Bits) Value gi|12044874|ref|NP_072684.1| GTP-binding protein, putative [Mycop... 543 0.0 gi|12045245|ref|NP_073056.1| GTP-binding protein (obg) [Mycoplasm... 73.2 4e-16 >gi|12044874|ref|NP_072684.1| GTP-binding protein, putative [Mycoplasma genitalium G-37] Length=367 Score = 543 bits (1400), Expect = 0.0, Method: Compositional matrix adjust. Identities = 262/350 (75%), Positives = 302/350 (86%), Gaps = 0/350 (0%) Query 1 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNAGIVNVIDERLDKLASLIKPD 60 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPN GIVNV DERLDKLASLI P+ Sbjct 1 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNTGIVNVSDERLDKLASLINPE 60 Query 61 KVTHTTFRFVDIAGLVKGASKGEGLGNQFLANIREVDLICHVVRCYEDKKIVHVNNQVDP 120 K+ +TTFRFVDIAGLVKGAS+G+GLGNQFLANIREVDLICHVVRC++DKKIVHVNN +DP Sbjct 61 KIVYTTFRFVDIAGLVKGASQGQGLGNQFLANIREVDLICHVVRCFQDKKIVHVNNTIDP 120 Query 121 VFDFEIIVNELIQADIEVVNTRIGKIKRKAESGDKQSKEEYQLLAPVLQGLQQNQMVLHL 180 VFDFEIIVNELIQAD E++ RIGK+KRKAESGDK +KEE+ LL VL GL+Q QM + Sbjct 121 VFDFEIIVNELIQADFELITNRIGKLKRKAESGDKIAKEEFVLLEIVLNGLKQGQMPIQT 180 Query 181 VNEVDLKKLKSLNLLTAKPILVVANVSEADLSNLDHNPHLTQLNQFLKQHNLPHAIPVCA 240 ++E +LK +KSLNLLTAKPIL+VANVSE DL NLD+N L +LN FL Q +P AI VC+ Sbjct 181 LSESELKTIKSLNLLTAKPILIVANVSENDLLNLDNNEALKKLNAFLDQKKIPKAITVCS 240 Query 241 LLENELSSLDANGRQDWLKELGLSDYQGLNQLIKTAYDAIGLWSFFTFGKQEVRAWAFKK 300 L+E ELS L RQ +L ELGL +Y GLN++I+ AY + LWSFFTFGK+EVRAW FKK Sbjct 241 LIEKELSGLKLEQRQYFLDELGLKNYSGLNRVIQAAYQTLNLWSFFTFGKKEVRAWTFKK 300 Query 301 GWLAPQCAGEIHTDFERGFIKVEVISWNQLYELKSLQEAKKQGLVRLRGQ 350 GW APQCAG+IH+DFE+GFIKVEVISW+QL+ +KSLQEAKKQGL+RL G+ Sbjct 301 GWNAPQCAGQIHSDFEKGFIKVEVISWDQLFAMKSLQEAKKQGLIRLEGK 350 >gi|12045245|ref|NP_073056.1| GTP-binding protein (obg) [Mycoplasma genitalium G-37] Length=433 Score = 73.2 bits (178), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 38/103 (37%), Positives = 58/103 (56%), Gaps = 17/103 (17%) Query 1 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNAGIVNVIDERLDKLASLIKPD 60 + + GIVG PN GKSTL S ++N + +IANY F T+ P G+V Sbjct 159 LANVGIVGFPNSGKSTLISKLSNAKPKIANYRFTTLIPVLGVV----------------- 201 Query 61 KVTHTTFRFVDIAGLVKGASKGEGLGNQFLANIREVDLICHVV 103 K + + F DI GL++ AS+G GLG+ FL +I +++ H++ Sbjct 202 KYQNNSLVFADIPGLIENASEGSGLGHDFLRHIERCEILIHLI 244 Lambda K H a alpha 0.320 0.137 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 41195415 Query= gi|13507766|ref|NP_109715.1| hypothetical protein MPN027 [Mycoplasma pneumoniae M129] Length=274 ***** No hits found ***** Lambda K H a alpha 0.324 0.137 0.435 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29219265 Query= gi|13507767|ref|NP_109716.1| sugar transferase [Mycoplasma pneumoniae M129] Length=299 Score E Sequences producing significant alignments: (Bits) Value gi|12044875|ref|NP_072685.1| hypothetical protein MG025 [Mycoplas... 475 8e-173 gi|12044912|ref|NP_072722.1| hypothetical protein MG060 [Mycoplas... 154 9e-47 >gi|12044875|ref|NP_072685.1| hypothetical protein MG025 [Mycoplasma genitalium G-37] Length=298 Score = 475 bits (1222), Expect = 8e-173, Method: Compositional matrix adjust. Identities = 219/298 (73%), Positives = 262/298 (88%), Gaps = 0/298 (0%) Query 1 MQFKYLFTVIIPTYNCGQYIPKALDSLLLQGEYFTKTQVLIVNDGSTDNTKQIVEPYTQQ 60 M KYLFTVIIPTYNC QYI KALDSLLLQ EYF KTQVLIVNDGS DNTK++V Y + Sbjct 1 MPSKYLFTVIIPTYNCCQYIKKALDSLLLQNEYFLKTQVLIVNDGSLDNTKEVVSDYLIK 60 Query 61 YSNIEYLEKPNGNWGSVVNFVKQNQLAKGQYITVLDSDDYFLANAFQRVAAHFGHDMIVS 120 YSNI Y EK NGNWGSV+N+VK+N+LA GQYITVLDSDDYFL ++F++VA FGHDMI+ Sbjct 61 YSNISYFEKTNGNWGSVINYVKKNKLALGQYITVLDSDDYFLKDSFKKVARFFGHDMIIG 120 Query 121 AFYCYISPKRRRFLKPYFGKTGVIEQKTKLRTPHSQPLAKFYRHEIFHLLDPLKEKLFYQ 180 AFYCYI+ + RFLKPYFGKTGVI++ TKLRTPHSQP+AKFY +++F+ L LKEKLF+Q Sbjct 121 AFYCYINENKTRFLKPYFGKTGVIKEHTKLRTPHSQPIAKFYSNKLFYELHDLKEKLFFQ 180 Query 181 DCLLYHNAINKVQSVFYICEPLAVWYATRPGNSTTMPWNNADKFQAWCDLLKQMNLYGAG 240 DCL+YH+AIN+V+SVFY+ EPLAVW++TRPGNSTT W N +KF AWC++L++MNLYGAG Sbjct 181 DCLMYHDAINRVESVFYLREPLAVWFSTRPGNSTTTSWENPNKFNAWCEILQKMNLYGAG 240 Query 241 IVIYIYTMLPGFLKELKRQQLVLDLAKKPAYTWLPQPLAFLFGGLMALRTRKYIRYPK 298 IVIYIYTMLPGFLK+LK++QL+L+L KPAYTWLP+PLAF+FGGLMA +TRKYI+YPK Sbjct 241 IVIYIYTMLPGFLKQLKKKQLILNLNHKPAYTWLPKPLAFIFGGLMAFKTRKYIKYPK 298 >gi|12044912|ref|NP_072722.1| hypothetical protein MG060 [Mycoplasma genitalium G-37] Length=297 Score = 154 bits (388), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 83/225 (37%), Positives = 138/225 (61%), Gaps = 18/225 (8%) Query 8 TVIIPTYNCGQYIPKALDSLLLQGEYFTKTQVLIVNDGSTDNTKQIVEPYTQQYSNI--E 65 +VIIPTYNC +I KA++S++ + +VLI++DGS DNT ++++ Q +N+ + Sbjct 4 SVIIPTYNCASFIEKAINSIVKNRPNDLEIEVLIIDDGSIDNTNKVIKKIQDQINNLTLQ 63 Query 66 YLEKPNGNWGSVVNFVKQNQLAKGQYITVLDSDDYF---LANAFQRVAAHFGHDMIVSAF 122 Y K NGNWGSV+N+V+ N+LAKG+++TVLDSDD F + FQ+ A +D I+ + Sbjct 64 YFYKSNGNWGSVINYVRNNKLAKGEWVTVLDSDDIFSKKTISIFQKYAQKQRYDAIIFDY 123 Query 123 Y-CYIS-----PKRRRFLKPYFGKTGVIEQKTKLRTPHSQPLAKFYRHEIFHLLDPLKEK 176 Y C+ P RF K I+ + K +TP PLAKF+++E+F+ L L+E Sbjct 124 YKCWKKFLWKIPTYARFRKE-------IKGELKKQTPFCIPLAKFFKNEVFYQLPKLREN 176 Query 177 LFYQDCLLYHNAINKVQSVFYICEPLAVWYATRPGNSTTMPWNNA 221 + +QD + +A+ +VF++ + ++ R GNS ++PW+++ Sbjct 177 VGFQDAIYTMHALQIANNVFHVSKAGGYYFFKRVGNSMSIPWHSS 221 Lambda K H a alpha 0.324 0.140 0.440 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32529221 Query= gi|13507768|ref|NP_109717.1| elongation factor P [Mycoplasma pneumoniae M129] Length=190 Score E Sequences producing significant alignments: (Bits) Value gi|12044876|ref|NP_072686.1| elongation factor P (efp) [Mycoplasm... 347 7e-126 >gi|12044876|ref|NP_072686.1| elongation factor P (efp) [Mycoplasma genitalium G-37] Length=190 Score = 347 bits (890), Expect = 7e-126, Method: Compositional matrix adjust. Identities = 165/190 (87%), Positives = 184/190 (97%), Gaps = 0/190 (0%) Query 1 MADMIEAKSLRSGQTIFGPNKEILLVLENTFNKTAMRQGIVKTKVKNLRTGAIVWIEFTG 60 MA+MIEAK+LR+GQTIFGPNKEILLVLENTFNKTAMRQGIVKTKVKNLRTGAIVW+EFTG Sbjct 1 MAEMIEAKNLRNGQTIFGPNKEILLVLENTFNKTAMRQGIVKTKVKNLRTGAIVWLEFTG 60 Query 61 DKLEQVIIDKKKMTFLYKDGANYVFMDQQDYSQIEIPEKQLEWEKNFITEDSEVTIISYQ 120 DKLEQVIIDKKKM FLYKDG N+VFMDQ+DYSQIEI EK+LEWEKNFITE+ EVT+I+YQ Sbjct 61 DKLEQVIIDKKKMNFLYKDGNNFVFMDQKDYSQIEINEKKLEWEKNFITEEIEVTVITYQ 120 Query 121 SEILGVNLPELVPIEVEFAEEAVQGNTANMARKRARLVSGYELDVPQFIRTGDKIVISTI 180 EILGVNLP+LVPIEVEFAE+A+QGNTANMARK+ARLV+GYELDVPQFI TGDKIVI+T+ Sbjct 121 DEILGVNLPDLVPIEVEFAEDAIQGNTANMARKKARLVTGYELDVPQFINTGDKIVIATV 180 Query 181 DGSYRERYNK 190 DG+YRER+NK Sbjct 181 DGNYRERFNK 190 Lambda K H a alpha 0.316 0.134 0.371 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17854140 Query= gi|13507769|ref|NP_109718.1| hypothetical protein MPN030 [Mycoplasma pneumoniae M129] Length=168 Score E Sequences producing significant alignments: (Bits) Value gi|12044877|ref|NP_072687.1| hypothetical protein MG027 [Mycoplas... 219 5e-76 >gi|12044877|ref|NP_072687.1| hypothetical protein MG027 [Mycoplasma genitalium G-37] Length=151 Score = 219 bits (557), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 108/147 (73%), Positives = 121/147 (82%), Gaps = 0/147 (0%) Query 22 VNGTTSKLTRTQRRIAIVEFIFATLFFLPKTADQIQAAFLDYDVPERPLNDWQKEIVKVF 81 V G T+KLTRTQRRIA+VEFIF+ LFFLPK A+ IQA FL+YD ER LN+WQK IVK F Sbjct 5 VKGLTNKLTRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEYDTKERQLNEWQKLIVKAF 64 Query 82 SERCVEFIELIENQQQRNQAEVQSKYNKVSGKKVDLLTKAVILCALSEQHAQATDKPLLI 141 SE F + IE QQ +NQ E+Q+KYNK+SGKK+DLLT AV+LCALSEQ A TDKPLLI Sbjct 65 SENIFSFQKKIEEQQLKNQLEIQTKYNKISGKKIDLLTTAVVLCALSEQKAHNTDKPLLI 124 Query 142 SEALLIMDHYSQVPEKKQTHALLDKLL 168 SEALLIMDHYSQ EKKQTHALLDKLL Sbjct 125 SEALLIMDHYSQGAEKKQTHALLDKLL 151 Lambda K H a alpha 0.322 0.135 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15075112 Query= gi|13507770|ref|NP_109719.1| hypothetical protein MPN031 [Mycoplasma pneumoniae M129] Length=203 Score E Sequences producing significant alignments: (Bits) Value gi|12044878|ref|NP_072688.1| hypothetical protein MG028 [Mycoplas... 256 1e-89 >gi|12044878|ref|NP_072688.1| hypothetical protein MG028 [Mycoplasma genitalium G-37] Length=201 Score = 256 bits (654), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 129/203 (64%), Positives = 158/203 (78%), Gaps = 2/203 (1%) Query 1 MRRNWREHYNVFVANLALVLGFMLNIVVARYTLTGATPQARFLFLTPFLGIVAASIFYFF 60 M+RNWR+HYNVF+ANL LV GF LNI+VA+ +L TPQ RFLF+TPFLG+V ++ YFF Sbjct 1 MKRNWRQHYNVFLANLVLVFGFALNILVAKQSLNNTTPQFRFLFVTPFLGVVIGAVLYFF 60 Query 61 DVKWFLADYPYKKFHFQKKWTWTYLSGVFVFFANILVNVILLALLVNQMTNQILSEKYTG 120 DVKWFL DYPYKKFHFQKKW YLSGV VFF N+L+ V+LL ++VN +TNQIL +Y Sbjct 61 DVKWFLIDYPYKKFHFQKKWAIVYLSGVIVFFLNVLIGVVLLVVMVNYITNQILEREYER 120 Query 121 LLDNAYPLLWSAVGVSIFLSLISIGLSKTAHFKIDVEMLKAKKGEPTAADKTDSRPVVVD 180 L N+ P LWS G SI LSLISIG+SKTAHF ID+E+LKAKKGEPT +KTD+R VV++ Sbjct 121 LFTNSLPYLWSTTGTSIVLSLISIGMSKTAHFFIDIEILKAKKGEPTDPNKTDNRAVVIN 180 Query 181 LDQTKSKKDGDNPPQASGDMTSL 203 LD+ K + +PP S +MTSL Sbjct 181 LDENKKNEKEQSPP--SAEMTSL 201 Lambda K H a alpha 0.325 0.138 0.422 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 19725945 Query= gi|13507771|ref|NP_109720.1| hydrolase [Mycoplasma pneumoniae M129] Length=108 Score E Sequences producing significant alignments: (Bits) Value gi|12044879|ref|NP_072689.1| hypothetical protein MG029 [Mycoplas... 149 3e-49 >gi|12044879|ref|NP_072689.1| hypothetical protein MG029 [Mycoplasma genitalium G-37] Length=186 Score = 149 bits (377), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 70/108 (65%), Positives = 85/108 (79%), Gaps = 0/108 (0%) Query 1 MKKLLVIVYPDMNDVEYTNTMVVFGFVKELQTVIYHPNLSTVKGSNGVTLVNQITSKVNL 60 MKK+LVIVYP+MNDVEYTN MVVF F+K +QT YH +L + SNGV VN I + +NL Sbjct 1 MKKILVIVYPEMNDVEYTNVMVVFSFIKTIQTTCYHHSLKKITASNGVVEVNNIVNTINL 60 Query 61 EEFDGVFIPGGMGATKVLDHDQQLLDTIRYFKDHDKYVFAICDTPNVL 108 EFD V+IPGG+GATK LD D++LL TI YFK ++ Y+FAICDTPNVL Sbjct 61 SEFDAVYIPGGIGATKHLDKDEKLLKTINYFKVNNLYLFAICDTPNVL 108 Lambda K H a alpha 0.322 0.140 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7221277 Query= gi|13507772|ref|NP_109721.1| uracil phosphoribosyltransferase [Mycoplasma pneumoniae M129] Length=206 Score E Sequences producing significant alignments: (Bits) Value gi|12044880|ref|NP_072690.1| uracil phosphoribosyltransferase (up... 337 2e-121 >gi|12044880|ref|NP_072690.1| uracil phosphoribosyltransferase (upp) [Mycoplasma genitalium G-37] Length=206 Score = 337 bits (865), Expect = 2e-121, Method: Compositional matrix adjust. Identities = 164/206 (80%), Positives = 184/206 (89%), Gaps = 0/206 (0%) Query 1 MIKKVHHALIENELTKLRDKSSSSSQFRMALSQITSLLFFEVTKESPLEEIVVKTPFTKT 60 MIKKV HALI NELTKLRDK++++SQFRMAL+QITSLLFFE TK+ PL + V+TPF KT Sbjct 1 MIKKVQHALILNELTKLRDKNTTTSQFRMALNQITSLLFFEATKQLPLATVEVETPFAKT 60 Query 61 KGYKLKNEIVLVPIMRAGLGMVDPIVRYSEKIRVGHLGIYREHEGTNVISYYKKMPENIG 120 KGYKLKN+IVLVPIMRAGLGM+D IVRYS+KIRVGHLGIYR+ + T+VISYYKKMPENI Sbjct 61 KGYKLKNDIVLVPIMRAGLGMIDAIVRYSDKIRVGHLGIYRQTQTTSVISYYKKMPENIS 120 Query 121 NSHVIILDPMLATGTTLATAISSIKKNHPIKISVVAIVAAPEGIKAVEAAHPDVDIYLAA 180 +SHVIILDPMLATGTTL TAI SIK++ PIKISV+AIVAAPEGI VE HP VDI+LAA Sbjct 121 DSHVIILDPMLATGTTLLTAIKSIKEDKPIKISVIAIVAAPEGINKVEKMHPHVDIFLAA 180 Query 181 IDEKLNKDNYIIPGLGDAGDRLFGTK 206 IDEKLN + YIIPGLGDAGDRLFGTK Sbjct 181 IDEKLNDNRYIIPGLGDAGDRLFGTK 206 Lambda K H a alpha 0.317 0.135 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20157900 Query= gi|13507773|ref|NP_109722.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129] Length=1443 Score E Sequences producing significant alignments: (Bits) Value gi|12044881|ref|NP_072691.1| DNA polymerase III, subunit alpha (p... 2235 0.0 >gi|12044881|ref|NP_072691.1| DNA polymerase III, subunit alpha (polC-1) [Mycoplasma genitalium G-37] Length=1451 Score = 2235 bits (5792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1058/1449 (73%), Positives = 1227/1449 (85%), Gaps = 10/1449 (1%) Query 1 MVFDTETEKGKRIWALSQFLVKKNILDHNELHQLNNRIELVYLENDRENALFLVALTLKK 60 MVF+ E EK K++ ALS FL+ NILDHNEL+ L RIE +Y E +FL A+T+ + Sbjct 1 MVFNLENEKDKKVLALSNFLIDNNILDHNELNSLIERIESIYFNKYIEEKVFLFAITISR 60 Query 61 PLTIDIWNALYEGFQ--------DAEGAELRITFQEDATFFKDGSTKSSVTLAIIKDYFK 112 PLTIDIWNALYEGF D E +L ITF+E+ FFK ++ SSVT+AIIKDYF Sbjct 61 PLTIDIWNALYEGFNELNEGFKADNESFKLTITFKENEPFFKSKNSFSSVTIAIIKDYFH 120 Query 113 SFFGKDKKYRILLEQELTHPNFLSYSNHELKANCQSQELDQWLIEQRQAFIKWMHQAGFT 172 SFF KDKKY+IL+EQEL++PNFLSY N ELKA CQ++EL +WL+++ ++FI WM+ AGF Sbjct 121 SFFSKDKKYKILIEQELSNPNFLSYENDELKAQCQTKELTEWLVQKSKSFIFWMNNAGFK 180 Query 173 HFGFVSLFN-PPAEKQLKVKSMKVSKYDKQFETEVFSTEFVPIHKINQQMDEIKLMGQIF 231 +F F++L+ E +LKVK++ VS+YDKQFET+VF+TEF+PIHKINQQ+D++K++GQIF Sbjct 181 NFNFIALYPIDKNESKLKVKAVTVSQYDKQFETKVFATEFIPIHKINQQIDDVKIIGQIF 240 Query 232 ELKDFPGYNNLRNTLNIYVTDFQLGGSLILKWFYKDPKTIEGIKIGTWVKATVKVERDAK 291 ELK + TLNIYVTDFQLGGSLILKW Y D K IEGI IG W+KA ++VERD Sbjct 241 ELKTHESLTG-KKTLNIYVTDFQLGGSLILKWSYTDEKKIEGITIGNWIKAHIQVERDPN 299 Query 292 TQLLQGIIKEISPIETPAYYRRPDQDKQKRVELVFHTKMSAFDGINSVQEYAQFAKERDW 351 TQ+L GI++EI+P+E P Y+R D KQKRVELVFHTKM+AFDGIN ++EYAQFAKER W Sbjct 300 TQILYGIVREINPVEIPNNYKRLDLSKQKRVELVFHTKMTAFDGINDIEEYAQFAKERGW 359 Query 352 KTIAVTDKDNIHIYPTLYEVAKKYGLKAIYGLECNLIDDHIKIVSNPDKTKLKDATFVIF 411 K I VTDKDNIHIYP YEVAKKY LKAIYGLE NL DDHIKIV NPD TKL DATFVIF Sbjct 360 KAITVTDKDNIHIYPKFYEVAKKYDLKAIYGLEFNLTDDHIKIVHNPDNTKLSDATFVIF 419 Query 412 DIETTGLHGRYDSVIEFAGIKVKHNREVERMQFFLKIDGPLPAAVTEITKITQAQLEDGM 471 DIETTGLHGRYD VIEF+ K+K+N E++ QFFLKID P+P +TEITKIT LE G+ Sbjct 420 DIETTGLHGRYDDVIEFSARKIKNNSEIDHQQFFLKIDKPIPKTITEITKITDEMLEGGI 479 Query 472 EQQAGLEKLRAWLDGCVMVAHNGLSFDLPFLQTQFEKYNIAPLTNPLIDTLALSWALNPG 531 +QQ GLEK+R +LD CVMVAHNG++FDLPFLQTQFEKYNI PLTNPLIDTL LSWALNP Sbjct 480 DQQQGLEKIRNYLDDCVMVAHNGINFDLPFLQTQFEKYNIKPLTNPLIDTLCLSWALNPL 539 Query 532 FASHTLSNICAKLKFDFDDERLHRADYDTQALKKVFDYFKEQVELMGITNLEQLDQELNQ 591 F+SHTLSNIC+KLK +FDDERLHRA+YDT+ALKKVF YFK+Q++ MGI L ++DQ LN+ Sbjct 540 FSSHTLSNICSKLKLEFDDERLHRAEYDTEALKKVFFYFKKQLKEMGINTLTEIDQNLNK 599 Query 592 QCHFELLKRTFTNTGIIYIKSQSGFAKLYELLSIALTDNNATRPLVLTSTLQKFAKSFVI 651 +C +L+KR FTNT I+Y+K+Q GF LYE+LSIALTD+NA RPLVL S+L KF KSF++ Sbjct 600 KCQIDLMKRVFTNTAIVYVKNQRGFQNLYEMLSIALTDHNANRPLVLASSLAKFRKSFLL 659 Query 652 TDNPVQGDIFKAALTKPLKELEAAIKRVDFVLIAPPGAYAGYTIREGLKKEAIPNAIKLV 711 T+NPVQGDIFKAALTKP+ ELE AI++VDFVLI+ P AY GYT+REGLKKE I +AIKLV Sbjct 660 TENPVQGDIFKAALTKPINELEKAIEKVDFVLISQPNAYLGYTLREGLKKELINDAIKLV 719 Query 712 VDTAQRLNKLVAVASDAYFIHPWENEYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVR 771 + TA +L KLVAVASDAYFIHPWENEYYKAIVCAKGLGG+WHRHFN KE+EQ VP VF+ Sbjct 720 IKTATKLKKLVAVASDAYFIHPWENEYYKAIVCAKGLGGKWHRHFNNKEKEQTVPEVFLH 779 Query 772 TTGEMLNEMSFLGEQLAYELVVENTNKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKT 831 TT EML MSFLGE +AY+LVVENTNK+ K L ++LVP + KL PPV++ SN+ L KT Sbjct 780 TTDEMLKRMSFLGEDIAYKLVVENTNKIVKLLDLNELVPTKNKLYPPVMQDSNQKLIDKT 839 Query 832 WSQAKAIYGDPLPKLIEQRIQEELKAIIDNGFGIIYWISHLLVKQSVQDGYFVGPRGSIG 891 W QA+ YG LPKLI++RI++EL AII NGFGI++WISHLLV+QSV+DGYFVGPRGSIG Sbjct 840 WKQAEKRYGKNLPKLIKERIEKELNAIISNGFGIVFWISHLLVEQSVKDGYFVGPRGSIG 899 Query 892 SSLVANLIGISEINPLVPHYLCESCQYFEVNEEVDDGYDLMVRDCPKCGAKAAFKGDGHN 951 SSL+ANLIGISEINPL HYLCE C YFEV++ VDDGYDLM+RDCPKC KA+FKGDGHN Sbjct 900 SSLIANLIGISEINPLAAHYLCEQCHYFEVSDSVDDGYDLMIRDCPKCHEKASFKGDGHN 959 Query 952 IPFATFMGFAGDKIPDIDLNFSSEYQAKAHAYVRELFGEQYTFRAGTIATVAEKTAYGYA 1011 IPFATFMGF+GDKIPDIDLNFSSEYQAKAH YVR+LFG TFRAGTIATVAEKTAYGYA Sbjct 960 IPFATFMGFSGDKIPDIDLNFSSEYQAKAHDYVRKLFGVNNTFRAGTIATVAEKTAYGYA 1019 Query 1012 RNYFEIIKQTELATAPEIERFKQKLVGIKRTTGQHPGGIMIFPNHKSVYEFTPCGYPADD 1071 RNYFEIIK+ +LAT EIERFKQKL+GIKRTTGQHPGGIMIFP+ SVYEFTPCG+PADD Sbjct 1020 RNYFEIIKRVDLATTAEIERFKQKLIGIKRTTGQHPGGIMIFPSDHSVYEFTPCGFPADD 1079 Query 1072 TSSDWKTTHFEYDALGNTILKLDILGQDDPTMLKHLGDLTHVNPQNIPRFDKKLTEMFWS 1131 S+WKTTHFEYDALG+ ILKLDILGQDDPTMLKHL DLT +NPQNIP FDK L MF S Sbjct 1080 VESEWKTTHFEYDALGDAILKLDILGQDDPTMLKHLADLTKINPQNIPHFDKNLISMFSS 1139 Query 1132 VNPLKLKPHYLDEPTGAIGIPEFGTKFVRKILEQTKPKGFGDLIRVSGLSHGKNVWADNA 1191 PL LKP +DE TGA+GIPEFGTKFVRKILEQTKPK F DLIRVSGLSHGKNVWADNA Sbjct 1140 NKPLNLKPGIVDEVTGAVGIPEFGTKFVRKILEQTKPKDFADLIRVSGLSHGKNVWADNA 1199 Query 1192 QKILKDQNLSLKDVIACRDDIMLYLIHKGMQAKDAFEIMEKVRKGIALNAKEVQLMQSNG 1251 QK++K L+L+DVIACRDDIMLYLI+KGMQAKDAFEIMEKVRKGI +NAKEV LMQ+ G Sbjct 1200 QKLIKSNRLTLRDVIACRDDIMLYLINKGMQAKDAFEIMEKVRKGIKVNAKEVSLMQNCG 1259 Query 1252 VEQHWINSCLKISYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHDVSGFK 1311 VEQ+WIN+CLKI+YLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHD++GF+ Sbjct 1260 VEQYWINACLKINYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHDINGFE 1319 Query 1312 SGVSFVKQKLEELNTLYRIKRIKPKEAELLTSYEVYLEMMARGIKLEQISLTHSHATRFV 1371 G F+K +L+ELN LYRIK+IKPKEAELLTSYEVYLEMMAR IKL+QIS+ +S+A FV Sbjct 1320 KGYEFIKNRLDELNKLYRIKKIKPKEAELLTSYEVYLEMMARNIKLQQISIQNSNARMFV 1379 Query 1372 EHNGMLIAPFITIPGMGEAVANSIIEARNEKPFSSLDDFKKRTKITKKHIEAFTQMQLLD 1431 EHNG+LIAPFITIPGMGEAVA+SI+EARNEKPF+SL+DFKKRTKITKKH+E Q+QL D Sbjct 1380 EHNGVLIAPFITIPGMGEAVASSIVEARNEKPFASLNDFKKRTKITKKHVETMEQLQLFD 1439 Query 1432 EFREQDNQK 1440 EF QD+ K Sbjct 1440 EFEHQDDHK 1448 Lambda K H a alpha 0.320 0.137 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 185424001 Query= gi|13507774|ref|NP_109723.1| hypothetical protein MPN035 [Mycoplasma pneumoniae M129] Length=666 Score E Sequences producing significant alignments: (Bits) Value gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 649 0.0 gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 170 7e-48 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 164 5e-45 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/668 (50%), Positives = 469/668 (70%), Gaps = 17/668 (3%) Query 1 MKAFRKLLLGLALPTTIGPLLGLLLTNTD-TVKNESLTTVRHRSSINQDF----DGIFHT 55 MK KL LGL LP T+GPLLG+++TNTD ++K S + ++++ N++ D + + Sbjct 1 MKTIHKLFLGLCLPATLGPLLGIVVTNTDQSIKFTSKSNSINKNNQNKELALLRDNLMNE 60 Query 56 VKLLEPIQQSNADPAASFALFQQKFPNLKRVANSTLNTFDVYNLLSGWKSSLTAYLNQVL 115 K+ EP+ F F+ K+ ++ + NS + DVY+LL G+K SLT + ++V+ Sbjct 61 AKVDEPLSFE-----KRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVI 115 Query 116 ALQQRIKAADQIFPNQKETLPKDENPNIFEVLGAYGGKGFFPTLGSNGLHLPPQLFQFFR 175 A QQ+IK AD+IFP+ K+ PK+ENPN+ + L Y G GFFP+LG NG +LP +FQ F Sbjct 116 AQQQKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFT 175 Query 176 DFQLSSFTIKDFEVALVSEPDIVQHDKVRYAFQVQFNLVLQLQINRNPVLFDFNLQLKTN 235 DF+++ + IK+F V LVSE DI++HDKVRYAF+V+FN+ L L IN++ V FDF+ LKT+ Sbjct 176 DFRINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTD 235 Query 236 NFANQTSFDELFNEKTNPLNWQFFSKLKVNHLVYEGNDITQLANTLLQSQFNVLQLDLNK 295 NF++ +F+E+FN K L ++F++K+ V+ L + G+D T +AN LLQ QFN+L++DLNK Sbjct 236 NFSDIENFNEIFNRKP-ALQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDLNK 294 Query 296 SIYRLNLNAMAQRFEHDWVQPLYAKRTQAKIAYEAEQARIAAENKRKELERQKLLAELKA 355 SIY L+L +RF+ ++VQPLY KR +AK+A+E EQ RIA E +R+E ER ++L ELK Sbjct 295 SIYALDLENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKE 354 Query 356 KAEHYQKIKQARENMLKGLKSITDFVKFWKS-PDRLLVGFNKQD-DITTRAGVYKALQIA 413 KAE +++K+A+ N+ K L ++ F F+ S DR+L+GF+ ++ TR G++KALQI+ Sbjct 355 KAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQIS 414 Query 414 YANYPQWTFYLTLQGWKNGSELLLKRPSWTNLLSDIHFQKAFNLKNTVSEQTLGAATLPG 473 Y+N+ WTFY++L GWK GS LLK+P W L D FQ AF L SEQ LG TLPG Sbjct 415 YSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQYAFGLGPNTSEQQLGRVTLPG 474 Query 474 YGYYGLRMSDWLRWALGYYSYIHMGVPQNVQTKFTGTPDNEQQVWIANEPFEWNKHYGVG 533 YGY G+RMSDWLRWALGYY+ + P+NV+ G ++++ +WI+ F+ N+ YG G Sbjct 475 YGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNREYGDG 534 Query 534 PKYKDKAYRFNMEISFELEGWIAVKWWAWAFKGSIPGNWKGKLKVTHLFDGMVPVWELGP 593 ++K KAYRF + ISFELEG + WW AF+GSIPG+W GKL+VTH FDG VP + L Sbjct 535 ERFKGKAYRFKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVPYYRL-- 592 Query 594 VNTHLPQYSFTDQQQLLFVPHSIQKIEAIGADKGINDLLKTQNLHNLERLSYESTNPIDL 653 +T PQY TD +LLFVPHSIQ++ A+G ++ IN LL++QNLHNLER SYE+T PIDL Sbjct 593 -HTTPPQYRLTDDMKLLFVPHSIQRVTAVG-NESINGLLRSQNLHNLERQSYEATAPIDL 650 Query 654 ISYLLYAI 661 ISY+LYAI Sbjct 651 ISYMLYAI 658 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 170 bits (430), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 156/533 (29%), Positives = 249/533 (47%), Gaps = 64/533 (12%) Query 141 PNIFEVLGAYGGKGFFPTLGSNGLHLPPQLFQFFRDFQLSSFTIKDFEVALVSEPDIVQH 200 P + + + + FFP L GL++ + + F + L +KDF + LV + DIV Sbjct 2 PKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVIK 61 Query 201 DKVRYAFQVQFNLVLQLQINRNPVLFDFNLQLKTNNFANQTSFDELFNEKTNPLNWQFFS 260 DK+RY+F+++ + + + N V F+L+ +T+NF N FN N LN Q F Sbjct 62 DKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLFW 119 Query 261 KLKVNHLVYEG-NDITQLANTLLQSQFNVLQLDLNKSIYRLN--LNAMAQRFEHDWVQPL 317 K +N LV + ND+T +A T + + ++ S+ +++ L+ +FE + ++P Sbjct 120 KPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPF 179 Query 318 YAKRTQAKIAYEAEQARIAAENKRKELERQKLLAELKAKAEHYQKIKQARENMLKGLKSI 377 +R +AK YE EQ RI AE ER+K ELK K E +++K+ +E K ++ Sbjct 180 KKEREKAKADYE-EQQRILAE------ERRKQEEELKRKEEEAKRLKEQQEQFNKSFENA 232 Query 378 TDFVKFWKSPDRLLVGFNKQDDITTRAGVYKALQIAYANYPQWTFYLTLQGWKNGSELLL 437 +F +WK N++ D+T + + AL+ ++A TF L + Sbjct 233 KEFKDYWK---------NQKKDVTDKTQLIDALKTSFAADKNKTFSLLIN---------- 273 Query 438 KRPSWTNLLSDIH----FQKAFNLKNTVSEQTLGAATLPGYGYYGLRMSDWLRWALGYYS 493 S+T SD + ++ N K SE+ + P G GL MSDWLR L Y+ Sbjct 274 ---SFTKATSDYYKNNKKDESENAKKAFSEKGI---QFPRQGLEGLYMSDWLRGKLTSYT 327 Query 494 YIHMGVPQNVQTKFTGTPDNEQQVWIANEPFEWNKHYGVGPKYKDKAYRFNMEISFELEG 553 I + + K +N W N E+ +HY Y+F EI + +G Sbjct 328 DIKLNL---TSIKIENKENNPTIDW-KNNGIEFRQHY---------PYKFKFEIDIKYQG 374 Query 554 WIAVKW---WAWAFKGSIPGNWKGKLKVTHLFDGMVPVWELGPVNTHLPQYSFTDQQQLL 610 + W F G IP +W G++ V + DG + + + + F D QLL Sbjct 375 GYKLTGLFSWFAPFSG-IPSSWNGEMDVKFIVDGDLDYNLVQNTDYPGSLFQFKD-NQLL 432 Query 611 FVPHSIQKIEAIGADKGINDLLKTQNLHNLERLSYESTNP--IDLISYLLYAI 661 F H ++I+ D DLLK QNLHNL+ L +T P +DL SYL Y + Sbjct 433 FTLHVKEQIKV--QDGKFMDLLKQQNLHNLD-LRNGATKPPVVDLASYLHYLV 482 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 164 bits (416), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 166/617 (27%), Positives = 275/617 (45%), Gaps = 65/617 (11%) Query 64 QSNADPAASFALFQQKFPNLKRVANSTLNTFDVYNLLSGWKSSLTAYLNQVLALQQRIKA 123 + D +F F +KF + +++ N+ L D+YNL SG+ S+ + ++ + LQ++++A Sbjct 75 EKETDYDQNFKSFTEKFKD-EKITNNQLGIVDIYNLFSGFHKSVKSTVDLMNQLQKQVEA 133 Query 124 ADQIFPNQKETLPKDENPN-IFEVLGAYGGKGFFPTLGSNGLHLPPQLFQFFRDFQLSSF 182 A+ IFP + + P +F+++ FP L GL++ + F + L S Sbjct 134 ANAIFPVDDAFVKLPKVPTELFKLVD----DNVFPKLNPKGLNISDNIAALFERYNLKSI 189 Query 183 TIKDFEVALVSEPDIVQHDKVRYAFQVQFNLVLQLQINRNPVL-FDFNLQLKTNNFANQT 241 +K+F++A + + D++ DKVRY F++Q N V+ DF L+ +T NFAN Sbjct 190 ELKNFDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQ 249 Query 242 SFDELFNEKTNPLNWQFFSKLKVNHLV-YEGNDITQLANTLLQSQFNVLQLDLNKSI--Y 298 F + N L+ Q F VN L GND+T +A T++ F ++L KS+ Y Sbjct 250 DLQNTFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEY 309 Query 299 RLNLNAMAQRFEHDWVQPLYAKRTQAKIAY----EAEQARIAAENKRKELERQKLLAELK 354 + Q FE + P +R AK AY + + + + + + Sbjct 310 DKVQPLVKQAFEERVLTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAEEKRKAE 369 Query 355 AKAEHYQKIKQARENMLKGLKSITDFVKFWKSPDRLLVGFNKQDDITTRAGVYKALQIAY 414 + +K ++ RE K S DF +W K D+T +A + AL+ A Sbjct 370 EAKRNQEKARREREAYEKSFNSFKDFKFYW---------LTKGKDVTKKADLIDALKTAI 420 Query 415 AN--YPQWTFYLTLQGWKNGSELLLKRPSWTNLLSDIHF-QKAFNLKNTVSEQTLGAATL 471 A Y TF L ++G+ +G E L + F +K + Sbjct 421 ATPAYRNRTFSLLIKGFASGVERYFNANKNDKELKKLAFGEKGIQFPRADA--------- 471 Query 472 PGYGYYGLRMSDWLRWALGYYSYIHMGVPQNVQTKFTGTPDNEQQVWIANEPFEWNKHYG 531 G GL MS++LR L + + + K T ++ Q W K G Sbjct 472 ---GVNGLYMSNFLRHELTSKAKFSLNLK---DIKVENTVEDTQLYW---------KDNG 516 Query 532 VGPKYKDKAYRFNMEISFELEGWIAVKWWAW--AFKGSIPGNWKGKLKVTHLFDGMVPVW 589 + K + Y+FN+ I + GW V WW W A IP +W G++ +T + +G + Sbjct 517 IHLKQAN-PYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDWSGEMNLTFVVNG--DLS 573 Query 590 ELGPVNTH-LPQ--YSFTDQQQLLFVPHSIQKIEAIGADKG-INDLLKTQNLHNLERLSY 645 E+ V+ H P + FTD+ +LLF ++ E I D LLK+QNLHNL+ S Sbjct 574 EI--VDKHDYPGTFFQFTDKNELLF---TLAVREQIKVDNNHFMGLLKSQNLHNLQLASG 628 Query 646 ESTNP-IDLISYLLYAI 661 + P +DL SY + + Sbjct 629 ATKPPVVDLASYFHFVL 645 Lambda K H a alpha 0.320 0.136 0.411 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 82095550 Query= gi|13507775|ref|NP_109724.1| hypothetical protein MPN036 [Mycoplasma pneumoniae M129] Length=673 Score E Sequences producing significant alignments: (Bits) Value gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 684 0.0 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 160 3e-43 gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 142 6e-38 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/672 (52%), Positives = 473/672 (70%), Gaps = 12/672 (2%) Query 1 MKTLHKLLLGLFLPAILGPLFGLLVTKTDAESPVAALHKSKSFSKNLDSFRALFVGEDIE 60 MKT+HKL LGL LPA LGPL G++VT TD + KS S +KN + + +++ Sbjct 1 MKTIHKLFLGLCLPATLGPLLGIVVTNTDQS--IKFTSKSNSINKNNQNKELALLRDNLM 58 Query 61 EQLAKVQQQTPEVSFASFQQKFPDKASLRNG-FQPIDVYNFLSGWKGALENFLAKVVELQ 119 + + + E F +F+ K+ D SL N F DVY+ L G+K +L F +V+ Q Sbjct 59 NEAKVDEPLSFEKRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVIAQQ 118 Query 120 KKIKAADDIFPNQKKNPDKKDNPNVLEVLGEYGGDGFFPTLGNNGLNIPDQVFQSFNNFQ 179 +KIK AD IFP+ K NP K++NPNVL+ L Y G GFFP+LG NG N+P+ VFQ+F +F+ Sbjct 119 QKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDFR 178 Query 180 IENYKISDFKVDIASERDIVQHDKFRFSYVVNIGLELALLVNKRPVYFNFSLDLRTNNFS 239 I +YKI +F VD+ SE DI++HDK R+++ V + L L +NK V F+F L+T+NFS Sbjct 179 INDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNFS 238 Query 240 NQAGFNEIFNAPGNAATNWQFFSKVKVKQLNYDGNDSTHLANTLLQDQFNTLNLNLQKSI 299 + FNEIFN A ++F++K+ V +L+++G+DST++AN LLQDQFN L ++L KSI Sbjct 239 DIENFNEIFNR--KPALQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDLNKSI 296 Query 300 YELPLTEMETKFQQEYVELLLAKRREEKRLWDEEQKRIEAERKQKEAELARIQRELKEKA 359 Y L L + +F +E+V+ L KRRE K W+EEQ+RI E++++E E ARI +ELKEKA Sbjct 297 YALDLENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKEKA 356 Query 360 EKDAAVKQAQTNLKTALSSVEGFVKFWTEGEDRIKLGFTKED-NLYTRAGLVKALKISFA 418 EKD VK+AQ NL+ AL +++ F F++ G+DR+ LGF N+ TR GL KAL+IS++ Sbjct 357 EKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQISYS 416 Query 419 NYRAWTFYITLLGWKAGSEKLLRKTSWTNLLSDVNFQNAFGLKNTASEEQVGKTSLPGYG 478 N++ WTFYI+LLGWK GS KLL+K W L D FQ AFGL SE+Q+G+ +LPGYG Sbjct 417 NFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQYAFGLGPNTSEQQLGRVTLPGYG 476 Query 479 YYGIRMSNWLRWALGYYANTHVGSPQNVKATIDGNPSDTTKVWIAPEDFKQGVHIGVGEH 538 Y GIRMS+WLRWALGYY + + P+NV+A + G+ +D +WI+P FK G GE Sbjct 477 YEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNREYGDGER 536 Query 539 FKGKAYKFKFEVSFELEGSIAAHWWTLALRGNIPGYWKGKLQVTHTFDGDVPSWYYGSVH 598 FKGKAY+FK +SFELEG + AHWWT+A RG+IPG W GKL+VTH FDGDVP Y +H Sbjct 537 FKGKAYRFKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVP---YYRLH 593 Query 599 THAPEYRFTEDNKLLFVPHSIQKITAVGGDSNGVNGLLKSQNLHNLERQSYEVTAPIDLV 658 T P+YR T+D KLLFVPHSIQ++TAVG +S +NGLL+SQNLHNLERQSYE TAPIDL+ Sbjct 594 TTPPQYRLTDDMKLLFVPHSIQRVTAVGNES--INGLLRSQNLHNLERQSYEATAPIDLI 651 Query 659 SYLMFAIA-KEP 669 SY+++AI+ K+P Sbjct 652 SYMLYAISDKKP 663 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 160 bits (404), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 178/679 (26%), Positives = 308/679 (45%), Gaps = 56/679 (8%) Query 7 LLLGLFLPAILGPLFGLLVTKTDAESPVAALHKSKSFSKNLDSFRALFVGEDIE---EQL 63 LLL LF A+ +F L + + L SK+ + L S + G D + L Sbjct 13 LLLSLFSAAVTITIFALPIFANNGSKTDLGLL-SKNSADFLGSSKRSLAGFDTPFSPDNL 71 Query 64 AKVQQQTP-EVSFASFQQKFPDKASLRNGFQPIDVYNFLSGWKGALENFLAKVVELQKKI 122 ++++T + +F SF +KF D+ N +D+YN SG+ ++++ + + +LQK++ Sbjct 72 QYLEKETDYDQNFKSFTEKFKDEKITNNQLGIVDIYNLFSGFHKSVKSTVDLMNQLQKQV 131 Query 123 KAADDIFPNQKKNPDKKDNPNVLEVLGEYGGDGFFPTLGNNGLNIPDQVFQSFNNFQIEN 182 +AA+ IFP P V L + D FP L GLNI D + F + +++ Sbjct 132 EAANAIFPVDDAFVKL---PKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFERYNLKS 188 Query 183 YKISDFKVDIASERDIVQHDKFRFSYVVNIGLELALLVNKRPVY-FNFSLDLRTNNFSNQ 241 ++ +F + + D++ DK R+++ + + + + V +F+L +T NF+N Sbjct 189 IELKNFDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANL 248 Query 242 AGFNEIFNAPGNAATNWQFFSKVKVKQLNYDGNDSTHLANTLLQDQFNTLNLNLQKSIYE 301 F GN + F+ K + GND TH+A T++ + F N+NL KS+ E Sbjct 249 QDLQNTFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIE 308 Query 302 LPLTEMETKFQQEYVELLLAKRREEKRLWDEEQKRIEAERKQKEAELARIQ--RELKEKA 359 +++ +Q + E +L ++E+ E K+ E +++ E + Q + +A Sbjct 309 --YDKVQPLVKQAFEERVLTPFKKER----EAAKKAYEEEQRRLEEERKRQLEELRRREA 362 Query 360 EKDAAVKQAQTNLKTALSSVEGFVKFWTEGEDRIKLGFTKEDNLYTRAGLVKALKISFAN 419 E+ ++A+ N + A E + K + +D TK ++ +A L+ ALK + A Sbjct 363 EEKRKAEEAKRNQEKARREREAYEKSFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIAT 422 Query 420 --YRAWTFYITLLGWKAGSEKLLRKTSWTNLLSDVNFQNAFGLKNTASEEQVGKTSLPGY 477 YR TF + + G+ +G E+ +N LK A E+ + Sbjct 423 PAYRNRTFSLLIKGFASGVERYFNAN-----------KNDKELKKLAFGEKGIQFPRADA 471 Query 478 GYYGIRMSNWLRWALGYYANTHVGSPQNVKATIDGNPSDTTKVWIAPEDFKQGVHIGVGE 537 G G+ MSN+LR L A + + +++K ++ DT W G+H+ Sbjct 472 GVNGLYMSNFLRHELTSKAKFSL-NLKDIK--VENTVEDTQLYWK-----DNGIHLK--- 520 Query 538 HFKGKAYKFKFEVSFELEGSIAAHWWTL--ALRGNIPGYWKGKLQVTHTFDGDVPSWYYG 595 + YKF + + G HWW A IP W G++ +T +GD+ Sbjct 521 --QANPYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDWSGEMNLTFVVNGDLSEI--- 575 Query 596 SVHTH---APEYRFTEDNKLLFVPHSIQKITAVGGDSNGVNGLLKSQNLHNLERQSYEVT 652 V H ++FT+ N+LLF ++I D+N GLLKSQNLHNL+ S Sbjct 576 -VDKHDYPGTFFQFTDKNELLFTLAVREQIKV---DNNHFMGLLKSQNLHNLQLASGATK 631 Query 653 AP-IDLVSYLMFAIAKEPT 670 P +DL SY F + E + Sbjct 632 PPVVDLASYFHFVLLTEKS 650 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 142 bits (357), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 143/535 (27%), Positives = 237/535 (44%), Gaps = 65/535 (12%) Query 142 PNVLEVLGEYGGDGFFPTLGNNGLNIPDQVFQSFNNFQIENYKISDFKVDIASERDIVQH 201 P V + ++ + FFP L GLNI + + + FN + ++ ++ DF +++ + DIV Sbjct 2 PKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVIK 61 Query 202 DKFRFSYVVNIGLELALLVNKRPVYFNFSLDLRTNNFSNQAGFNEIFNAPGNAATNWQFF 261 DK R+S+ + + E+ V F L +T+NF N FN GN F+ Sbjct 62 DKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLFW 119 Query 262 SKVKVKQLNYDGNDSTHLANTLLQDQFNTLNLNLQKSIYELP--LTEMETKFQQEYVELL 319 + K ++ + ND T +A T + D N N+ S+ ++ L +TKF++E +E Sbjct 120 KPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIE-P 178 Query 320 LAKRREEKRLWDEEQKRIEAERKQKEAELARIQRELKEKAEKDAAVKQAQTNLKTALSSV 379 K RE+ + EEQ+RI AE ++K+ E + + E ++ +K+ Q + + Sbjct 179 FKKEREKAKADYEEQQRILAEERRKQEEELKRKEEEAKR------LKEQQEQFNKSFENA 232 Query 380 EGFVKFWTEGEDRIKLGFTKEDNLYTRAGLVKALKISFANYRAWTFYITLLGWKAGSEKL 439 + F +W ++ ++ + L+ ALK SFA + TF + + Sbjct 233 KEFKDYWK----------NQKKDVTDKTQLIDALKTSFAADKNKTFSLLI---------- 272 Query 440 LRKTSWTNLLSDVNFQN----AFGLKNTASEEQVGKTSLPGYGYYGIRMSNWLRWALGYY 495 S+T SD N + K SE+ + P G G+ MS+WLR L Y Sbjct 273 ---NSFTKATSDYYKNNKKDESENAKKAFSEKGI---QFPRQGLEGLYMSDWLRGKLTSY 326 Query 496 ANTHVGSPQNVKATIDGNPSDTTKVWIAPEDFKQGVHIGVGEHFKGKAYKFKFEVSFELE 555 + + I+ ++ T W + I +H+ YKFKFE+ + + Sbjct 327 TDIKLNL---TSIKIENKENNPTIDW-------KNNGIEFRQHY---PYKFKFEIDIKYQ 373 Query 556 GS---IAAHWWTLALRGNIPGYWKGKLQVTHTFDGDVPSWYYGSVHTHAPEYRFT-EDNK 611 G W G IP W G++ V DGD+ Y +T P F +DN+ Sbjct 374 GGYKLTGLFSWFAPFSG-IPSSWNGEMDVKFIVDGDLD--YNLVQNTDYPGSLFQFKDNQ 430 Query 612 LLFVPHSIQKITAVGGDSNGVNGLLKSQNLHNLERQSYEVTAP-IDLVSYLMFAI 665 LLF H ++I G LLK QNLHNL+ ++ P +DL SYL + + Sbjct 431 LLFTLHVKEQIKVQDG---KFMDLLKQQNLHNLDLRNGATKPPVVDLASYLHYLV 482 Lambda K H a alpha 0.317 0.134 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 83069565 Query= gi|13507776|ref|NP_109725.1| hypothetical protein MPN037 [Mycoplasma pneumoniae M129] Length=147 ***** No hits found ***** Lambda K H a alpha 0.325 0.133 0.451 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12216708 Query= gi|13507777|ref|NP_109726.1| hypothetical protein MPN038 [Mycoplasma pneumoniae M129] Length=116 ***** No hits found ***** Lambda K H a alpha 0.314 0.134 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8225784 Query= gi|13507778|ref|NP_109727.1| hypothetical protein MPN039 [Mycoplasma pneumoniae M129] Length=338 Score E Sequences producing significant alignments: (Bits) Value gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 255 1e-81 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 93.6 9e-23 gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 79.0 6e-18 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 255 bits (652), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 216/338 (64%), Gaps = 8/338 (2%) Query 1 MTKLPKLLLGLTFSVSLIPFSSLLITSTDVNKQPVPTALQRTGASAIHEGSFQTITLGQS 60 M + KL LGL +L P +++T+TD Q + + + ++ + L + Sbjct 1 MKTIHKLFLGLCLPATLGPLLGIVVTNTD---QSIKFTSKSNSINKNNQNK-ELALLRDN 56 Query 61 LMEQIEQLQQFTPAQRFTQFKKKFPNQKLLSQSELSPVDVYNFLSGWQDALVSFLDRVIK 120 LM + + + + +RF FK K+ + L+ S S DVY+ L G++ +L +F D VI Sbjct 57 LMNEAKVDEPLSFEKRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVIA 116 Query 121 LQGKVKEANEIFNPNVGDQIVLPKKENPNVLEVLGEYNGFGFFPTLGKNGLNLPQQIFEN 180 Q K+K+A++IF P+ D PK+ENPNVL+ L Y G GFFP+LGKNG NLP+ +F+N Sbjct 117 QQQKIKDADKIF-PSTKDNP--PKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQN 173 Query 181 FTDFKVESYQINDFKVSLVGERDIIKNDKVRFSYAVQIPLNLELLVNNQKVTFNITVDLR 240 FTDF++ Y+I +F V LV E DIIK+DKVR+++ V+ + L L +N V F+ L+ Sbjct 174 FTDFRINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILK 233 Query 241 TNNFSTQETFNDLFNNGTAPTNWQFFSRIKVNKLHYDQTDATHLANTLLQDQFNALNLDL 300 T+NFS E FN++FN A ++F+++I V+KL ++ +D+T++AN LLQDQFN L +DL Sbjct 234 TDNFSDIENFNEIFNRKPA-LQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDL 292 Query 301 QKSIYDLNLDDLEERFEEEYAKPLREKRTQQKKEWEEE 338 KSIY L+L++ +ERF++E+ +PL +KR + K WEEE Sbjct 293 NKSIYALDLENAKERFDKEFVQPLYQKRREAKLAWEEE 330 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 93.6 bits (231), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 81/266 (30%), Positives = 140/266 (53%), Gaps = 13/266 (5%) Query 75 QRFTQFKKKFPNQKLLSQSELSPVDVYNFLSGWQDALVSFLDRVIKLQGKVKEANEIFNP 134 Q F F +KF ++K+ + ++L VD+YN SG+ ++ S +D + +LQ +V+ AN IF P Sbjct 82 QNFKSFTEKFKDEKI-TNNQLGIVDIYNLFSGFHKSVKSTVDLMNQLQKQVEAANAIF-P 139 Query 135 NVGDQIV-LPKKENPNVLEVLGEYNGFGFFPTLGKNGLNLPQQIFENFTDFKVESYQIND 193 V D V LPK P L L + N FP L GLN+ I F + ++S ++ + Sbjct 140 -VDDAFVKLPKV--PTELFKLVDDN---VFPKLNPKGLNISDNIAALFERYNLKSIELKN 193 Query 194 FKVSLVGERDIIKNDKVRFSYAVQIPL-NLELLVNNQKVTFNITVDLRTNNFSTQETFND 252 F ++ + + D+I DKVR+++ +Q+ + + N + + T+ +T NF+ + + Sbjct 194 FDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQN 253 Query 253 LFNNGTAPTNWQFFSRIKVNKLHYDQ-TDATHLANTLLQDQFNALNLDLQKSI--YDLNL 309 F + Q F VNKL + D TH+A T++ + F N++L KS+ YD Sbjct 254 TFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQ 313 Query 310 DDLEERFEEEYAKPLREKRTQQKKEW 335 +++ FEE P +++R KK + Sbjct 314 PLVKQAFEERVLTPFKKEREAAKKAY 339 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 79.0 bits (193), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 5/180 (3%) Query 162 FFPTLGKNGLNLPQQIFENFTDFKVESYQINDFKVSLVGERDIIKNDKVRFSYAVQIPLN 221 FFP L GLN+ + I E F + ++ Q+ DF + LV + DI+ DK+R+S+ +++ Sbjct 16 FFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVIKDKIRYSFEIKMDFE 75 Query 222 LELLVNNQKVTFNITVDLRTNNFSTQETFNDLFNNGTAPTNWQFFSRIKVNKL-HYDQTD 280 ++ N V + +T+NF + + FN T Q F + +NKL +Q D Sbjct 76 VDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFNGNDLNT--QLFWKPLINKLVDKNQND 133 Query 281 ATHLANTLLQDQFNALNLDLQKSIY--DLNLDDLEERFEEEYAKPLREKRTQQKKEWEEE 338 T +A T + D N ++ S+ D LD + +FE+E +P +++R + K ++EE+ Sbjct 134 LTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPFKKEREKAKADYEEQ 193 Lambda K H a alpha 0.317 0.134 0.380 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37797855 Query= gi|13507779|ref|NP_109728.1| hypothetical protein MPN040 [Mycoplasma pneumoniae M129] Length=103 ***** No hits found ***** Lambda K H a alpha 0.324 0.125 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6653565 Query= gi|13507780|ref|NP_109729.1| hypothetical protein MPN041 [Mycoplasma pneumoniae M129] Length=186 Score E Sequences producing significant alignments: (Bits) Value gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 152 3e-45 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 152 bits (385), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 112/184 (61%), Gaps = 8/184 (4%) Query 1 MRDAIDKYATYSVSRLNNVTTYLPGKVDGSGKDQIWISPNNFQVNREWGNGAHFKDKAYR 60 +R A+ Y ++++S NV L G D + K IWISP+ F++NRE+G+G FK KAYR Sbjct 486 LRWALGYYTSFTLSPPKNVEANLIG--DANDKKHIWISPHTFKLNREYGDGERFKGKAYR 543 Query 61 FNFDVKVEYDVEVKAAWWTALFRGSIPGYWKGKFKVTYSFNGEVPSWNYGDKQVRPPQYS 120 F + E + + A WWT FRGSIPG W GK +VT+ F+G+VP Y PPQY Sbjct 544 FKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVP---YYRLHTTPPQYR 600 Query 121 FKEQEKQLLFVPRHVQKIEAEGKHLEIINPFLKDQHLDFFEHYHPDLTQPLDMVSYLMYA 180 + K LLFVP +Q++ A G E IN L+ Q+L E + T P+D++SY++YA Sbjct 601 LTDDMK-LLFVPHSIQRVTAVGN--ESINGLLRSQNLHNLERQSYEATAPIDLISYMLYA 657 Query 181 IADK 184 I+DK Sbjct 658 ISDK 661 Lambda K H a alpha 0.320 0.137 0.438 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17480749 Query= gi|13507781|ref|NP_109730.1| hypothetical protein MPN042 [Mycoplasma pneumoniae M129] Length=672 Score E Sequences producing significant alignments: (Bits) Value gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 554 0.0 gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 125 2e-32 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 115 1e-28 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 554 bits (1427), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/673 (43%), Positives = 438/673 (65%), Gaps = 14/673 (2%) Query 1 MKKLHKILLGLSLPASLAPLSGFISTDADNSQFSLKKSSTEIKGTQSIHLLNLGESLTEE 60 MK +HK+ LGL LPA+L PL G + T+ D S KS++ K Q+ L L ++L E Sbjct 1 MKTIHKLFLGLCLPATLGPLLGIVVTNTDQSIKFTSKSNSINKNNQNKELALLRDNLMNE 60 Query 61 IKEAQKRTPETSFASFKQKFPNKESFVKG-FQPIDVYNLLSGWKDAISSFLDKVVELQKK 119 K + + E F +FK K+ + S F DVY+LL G+K ++++F D+V+ Q+K Sbjct 61 AKVDEPLSFEKRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTFFDEVIAQQQK 120 Query 120 IEEANKIFNTNIGNQIDLPEDENPNVLNVLGSYGGEGFFPTLGKNGLNLPQQIFENFTDF 179 I++A+KIF + N P++ENPNVL+ L +Y G GFFP+LGKNG NLP+ +F+NFTDF Sbjct 121 IKDADKIFPSTKDNP---PKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDF 177 Query 180 KVVSHKIHDFQVSLVGERDIIKNDKVRFSYAVQIPLNLELLVNNQKVTFNITVDLRTNNF 239 ++ +KI +F V LV E DIIK+DKVR+++ V+ + L L +N V F+ L+T+NF Sbjct 178 RINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNF 237 Query 240 STQETFNELFNKCIGPVNWQFFSRVKVDKLHYDQTDATHLANTLLQDQFNALNLDLEKSI 299 S E FNE+FN+ + ++F++++ V KL ++ +D+T++AN LLQDQFN L +DL KSI Sbjct 238 SDIENFNEIFNRKPA-LQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDLNKSI 296 Query 300 YDLELPRLEAEFQQKYVDPLIEKKQRQKAEWEEAERIRKEEEEKHQKELEEQQRIQAEKA 359 Y L+L + F +++V PL +K++ K WEE +R EE+ + ++E + EKA Sbjct 297 YALDLENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKEKA 356 Query 360 KNDEQLQKPQTELKKALGGIDSFVEFFTNNDLRLKLGYTKED-NVRTRAGLFRALEVSFG 418 + D+++++ Q L+KALG +D+F FF++ R+ LG+ NV+TR GLF+AL++S+ Sbjct 357 EKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQISYS 416 Query 419 NYRAWTFYITLLGWKDTTEKIFKKAKWQDIRDDEKFRKAFGLSPKATEKDVGKVTNPGYG 478 N++ WTFYI+LLGWK+ + K+ KK W +RDD+ F+ AFGL P +E+ +G+VT PGYG Sbjct 417 NFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQYAFGLGPNTSEQQLGRVTLPGYG 476 Query 479 YQGIYIKDSLRDGIAKYSDSTVSEPKNVKVSLPGTVGDNEEGKIWIASHNFRQNHEWGAG 538 Y+GI + D LR + Y+ T+S PKNV+ +L G D + IWI+ H F+ N E+G G Sbjct 477 YEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKH--IWISPHTFKLNREYGDG 534 Query 539 EKFKYSAYRFKFDVTVDYDVEVSAKWWTWAFRGSIPGYWRGKFKVTYSFDGVVPSWKYGH 598 E+FK AYRFK ++ + + ++A WWT AFRGSIPG W GK +VT+ FDG VP Y Sbjct 535 ERFKGKAYRFKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVP---YYR 591 Query 599 IQVRTPQYSFNKQEQKILFVPHAIQKIAAEGSNLDLINPFLKDQKLDEFEHYHPDLTKPL 658 + PQY + K+LFVPH+IQ++ A G+ + IN L+ Q L E + T P+ Sbjct 592 LHTTPPQYRLT-DDMKLLFVPHSIQRVTAVGN--ESINGLLRSQNLHNLERQSYEATAPI 648 Query 659 DLVAYLLYAITTR 671 DL++Y+LYAI+ + Sbjct 649 DLISYMLYAISDK 661 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 125 bits (314), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 136/540 (25%), Positives = 246/540 (46%), Gaps = 73/540 (14%) Query 143 PNVLNVLGSYGGEGFFPTLGKNGLNLPQQIFENFTDFKVVSHKIHDFQVSLVGERDIIKN 202 P V + E FFP L GLN+ + I E F + + ++ DF + LV + DI+ Sbjct 2 PKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVIK 61 Query 203 DKVRFSYAVQIPLNLELLVNNQKVTFNITVDLRTNNFSTQETFNELFNKCIGPVNWQFFS 262 DK+R+S+ +++ ++ N V + +T+NF + FN +N Q F Sbjct 62 DKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFNG--NDLNTQLFW 119 Query 263 RVKVDKL-HYDQTDATHLANTLLQDQFNALNLDLEKSIY--DLELPRLEAEFQQKYVDPL 319 + ++KL +Q D T +A T + D N ++ S+ D +L + +F+++ ++P Sbjct 120 KPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPF 179 Query 320 IEKKQRQKAEWEEAERIRKEEEEKHQKELEEQQRIQAEKAKNDEQLQKPQTELKKALGGI 379 +++++ KA++EE +RI EE K ++EL+ ++ +L++ Q + K+ Sbjct 180 KKEREKAKADYEEQQRILAEERRKQEEELKRKEEEAK-------RLKEQQEQFNKSFENA 232 Query 380 DSFVEFFTNNDLRLKLGYTKEDNVRTRAGLFRALEVSFGNYRAWTFYITLLGWKDTTEKI 439 F +++ N ++ +V + L AL+ SF + TF + + + T Sbjct 233 KEFKDYWKN----------QKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDY 282 Query 440 FKKAKWQDIRDDEKFRKAFGLSPKATEKDVGKVTNPGYGYQGIYIKDSLRDGIAKYSDST 499 +K K + E +KAF +EK + P G +G+Y+ D LR + Y+D Sbjct 283 YKNNKKD---ESENAKKAF------SEKG---IQFPRQGLEGLYMSDWLRGKLTSYTD-- 328 Query 500 VSEPKNVKVSLPGTVGDNEEGKIWIASHN----FRQNHEWGAGEKFKYSAYRFKFDVTVD 555 +K++L +N+E I N FRQ++ Y+FKF++ + Sbjct 329 ------IKLNLTSIKIENKENNPTIDWKNNGIEFRQHY-----------PYKFKFEIDIK 371 Query 556 YD--VEVSAKW-WTWAFRGSIPGYWRGKFKVTYSFDGVVPSWKYGHIQ-VRTPQYSFNKQ 611 Y +++ + W F G IP W G+ V + DG Y +Q P F + Sbjct 372 YQGGYKLTGLFSWFAPFSG-IPSSWNGEMDVKFIVDG---DLDYNLVQNTDYPGSLFQFK 427 Query 612 EQKILFVPHAIQKIAAE-GSNLDLINPFLKDQKLDEFEHYHPDLTKP--LDLVAYLLYAI 668 + ++LF H ++I + G +DL LK Q L + TKP +DL +YL Y + Sbjct 428 DNQLLFTLHVKEQIKVQDGKFMDL----LKQQNLHNLD-LRNGATKPPVVDLASYLHYLV 482 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 115 bits (288), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 144/609 (24%), Positives = 271/609 (44%), Gaps = 68/609 (11%) Query 1 MKKLHKILLGLSLPASLAPLSGFISTDADNSQFSLKKSSTEIKGTQSIHLLNLGESLT-E 59 +K L L ++ ++ L F + + L K+S + G+ L + + Sbjct 10 VKALLLSLFSAAVTITIFALPIFANNGSKTDLGLLSKNSADFLGSSKRSLAGFDTPFSPD 69 Query 60 EIKEAQKRTP-ETSFASFKQKFPNKESFVKGFQPIDVYNLLSGWKDAISSFLDKVVELQK 118 ++ +K T + +F SF +KF +++ +D+YNL SG+ ++ S +D + +LQK Sbjct 70 NLQYLEKETDYDQNFKSFTEKFKDEKITNNQLGIVDIYNLFSGFHKSVKSTVDLMNQLQK 129 Query 119 KIEEANKIFNTNIGNQIDLPEDENPNVLNVLGSYGGEGFFPTLGKNGLNLPQQIFENFTD 178 ++E AN IF +D + P V L + FP L GLN+ I F Sbjct 130 QVEAANAIF------PVDDAFVKLPKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFER 183 Query 179 FKVVSHKIHDFQVSLVGERDIIKNDKVRFSYAVQIPL-NLELLVNNQKVTFNITVDLRTN 237 + + S ++ +F ++ + + D+I DKVR+++ +Q+ + + N + + T+ +T Sbjct 184 YNLKSIELKNFDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTV 243 Query 238 NFSTQETFNELFNKCIGPVNWQFFSRVKVDKLHYDQ-TDATHLANTLLQDQFNALNLDLE 296 NF+ + F K ++ Q F V+KL + D TH+A T++ + F N++L Sbjct 244 NFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLA 303 Query 297 KSI--YDLELPRLEAEFQQKYVDPLIEKKQRQKAE------WEEAERIRKEEEEKHQKEL 348 KS+ YD P ++ F+++ + P KK+R+ A+ E RK + E+ ++ Sbjct 304 KSVIEYDKVQPLVKQAFEERVLTPF--KKEREAAKKAYEEEQRRLEEERKRQLEELRRRE 361 Query 349 EEQQRIQAEKAKNDEQLQKPQTELKKALGGIDSFVEFFTNNDLRLKLGYTKEDNVRTRAG 408 E++R E +N E+ ++ + +K+ F ++ TK +V +A Sbjct 362 AEEKRKAEEAKRNQEKARREREAYEKSFNSFKDFKFYW----------LTKGKDVTKKAD 411 Query 409 LFRALEVSFGN--YRAWTFYITLLGWKDTTEKIFKKAKWQDIRDDEKFRKAFGLSPKATE 466 L AL+ + YR TF + + G+ E+ F K D E + AFG E Sbjct 412 LIDALKTAIATPAYRNRTFSLLIKGFASGVERYFNANK----NDKELKKLAFG------E 461 Query 467 KDVGKVTNPGYGYQGIYIKDSLRDGIAKYSDSTVSEPKNVKVSLPGTVGDNE----EGKI 522 K + + G G+Y+ + LR + + +++ K++KV TV D + + I Sbjct 462 KGI-QFPRADAGVNGLYMSNFLRHELTSKAKFSLN-LKDIKVE--NTVEDTQLYWKDNGI 517 Query 523 WIASHNFRQNHEWGAGEKFKYSAYRFKFDVTVDYDVEVSAKWWTW--AFRGSIPGYWRGK 580 + N Y+F ++ + Y+ + WW W A IP W G+ Sbjct 518 HLKQAN----------------PYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDWSGE 561 Query 581 FKVTYSFDG 589 +T+ +G Sbjct 562 MNLTFVVNG 570 Lambda K H a alpha 0.316 0.135 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 82930420 Query= gi|13507782|ref|NP_109731.1| glycerol uptake facilitator [Mycoplasma pneumoniae M129] Length=264 Score E Sequences producing significant alignments: (Bits) Value gi|12044883|ref|NP_072693.1| glycerol uptake facilitator (glpF) [... 268 2e-92 >gi|12044883|ref|NP_072693.1| glycerol uptake facilitator (glpF) [Mycoplasma genitalium G-37] Length=258 Score = 268 bits (685), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 133/254 (52%), Positives = 180/254 (71%), Gaps = 9/254 (4%) Query 8 SELPRWIGAEFLGTFFLILSGNGAGSQLTLNKMFAKESKAKLLTAAFAWGIAVLVGVLIA 67 ++L W AE +GTF LI+ GNGA +Q+ L KM E+KAK LT A WGI VL GVL A Sbjct 7 TQLGWWFLAELIGTFILIIFGNGAVAQVNLKKMATSETKAKFLTVALTWGIGVLFGVLTA 66 Query 68 NSLFEGAGNINPAVSLFYAVSGTIQKALYPLHVNFSIPLLWVALLLAWVAQFAGAMLAQA 127 N++F+G+G++NPA+SLFYA++G+I+ L+W ++ +AQF GAM+AQ Sbjct 67 NAIFKGSGHLNPAISLFYAINGSIKS---------PTALIWPGFVIGILAQFLGAMIAQT 117 Query 128 LLNFLFWKHIEQTDPQSVLVTHCTNPAIFNIPRNFATEFVATSVLIASLLVAGSFGANRF 187 LNFLFWK + TDPQ+VL HCT+P++FNI RNF TEF+AT +LI ++ A F N Sbjct 118 TLNFLFWKQLSSTDPQTVLAMHCTSPSVFNITRNFLTEFIATLILIGGVVAASHFLHNNP 177 Query 188 DQSPRGVVPMLVVTGLIMSFGAATGTAINPARDLGPRIVYWLSPIKNKDPNLKYSWIPVA 247 + P G + + +V G+I++FG ATG+AINPARDLG RIV+ L+PIKNKD N KYSWIPV Sbjct 178 NSVPPGFMGLWLVAGIIIAFGGATGSAINPARDLGTRIVFQLTPIKNKDANWKYSWIPVI 237 Query 248 APLSASVILGVLVA 261 APLSA ++L +++ Sbjct 238 APLSAGLVLSIIIG 251 Lambda K H a alpha 0.325 0.138 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27793935 Query= gi|13507783|ref|NP_109732.1| thymidine kinase [Mycoplasma pneumoniae M129] Length=191 Score E Sequences producing significant alignments: (Bits) Value gi|12044884|ref|NP_072694.1| thymidine kinase (tdk) [Mycoplasma g... 277 7e-98 >gi|12044884|ref|NP_072694.1| thymidine kinase (tdk) [Mycoplasma genitalium G-37] Length=213 Score = 277 bits (709), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 130/181 (72%), Positives = 153/181 (85%), Gaps = 2/181 (1%) Query 9 QSPRGWIEVICGPMFSGKTEELLRKIKRWKLAKIPVIIFKPKIDTRQQHLVKSRNGHSDE 68 Q+ +GW EVICGPMFSGKTE+LL KIKRWK+AKI V+IFKP IDTRQ ++VKSRNG D+ Sbjct 9 QTKKGWTEVICGPMFSGKTEKLLHKIKRWKIAKISVVIFKPIIDTRQTNIVKSRNGEYDQ 68 Query 69 AIEINSPLEIYDYLTKDRFDVVAIDEAQFFSSEIVEVVKSLNDLGINVIVSGLDTDFRAE 128 AI INSP EIYD+L + +VAIDEAQFFS+EI+EVV +LN++G NVI+SGLDTDFRAE Sbjct 69 AITINSPFEIYDHLVDKNYQIVAIDEAQFFSNEIIEVVTTLNEIGTNVIISGLDTDFRAE 128 Query 129 PFGSIPQLLAIADKICKLDAVCNVCGQLAQRTQRIVSK--SNETVLIGDIEAYEPRCKLH 186 PFG IPQLLAIAD + KLDA+CNVCG LAQRTQR+V+K ++ VLIGD EAYE RCKLH Sbjct 129 PFGCIPQLLAIADVVNKLDAICNVCGSLAQRTQRLVNKNTNDNLVLIGDAEAYEARCKLH 188 Query 187 Q 187 Sbjct 189 H 189 Lambda K H a alpha 0.321 0.138 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17998125 Query= gi|13507784|ref|NP_109733.1| histidyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=414 Score E Sequences producing significant alignments: (Bits) Value gi|12044885|ref|NP_072695.1| histidyl-tRNA synthetase [Mycoplasma... 537 0.0 >gi|12044885|ref|NP_072695.1| histidyl-tRNA synthetase [Mycoplasma genitalium G-37] Length=414 Score = 537 bits (1384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 250/414 (60%), Positives = 319/414 (77%), Gaps = 0/414 (0%) Query 1 MSVLQKPRGVKDWYGEELIYFNWTVHQITNLAWKWGFSEVKTPLLEYAEAFKRTNANADI 60 M+ LQKPRGVKDW+G+EL+YFNW V +I +LA+ WGFSEVKTPL E A+ F+R+NANADI Sbjct 1 MNFLQKPRGVKDWFGDELVYFNWIVKKIRSLAFNWGFSEVKTPLFENAQLFQRSNANADI 60 Query 61 VKKELYEFHDKSNRLLALRPEATAGIVRLVCENKLLQPQNYPLRLFTIGTMYRYERPQSN 120 V+KELY+F DKS R LALRPEAT IVRL CENKL+Q N+PL+LF IG+MYRYERPQ+N Sbjct 61 VQKELYQFFDKSQRELALRPEATTPIVRLACENKLMQEANFPLKLFCIGSMYRYERPQNN 120 Query 121 RYREHYQFSCEVIGDTNPTVLLDTLLLGHAIIQQLGIEGVILKLNNLGNSATIQQWNQAL 180 R+REH+QFSCEV G +N + LDTLL +++++ LGI G +LK+NNL N T+ +WN+AL Sbjct 121 RFREHWQFSCEVFGFSNLFIFLDTLLFANSLLEALGITGYVLKINNLANFETLSKWNKAL 180 Query 181 QAYLTQFKAQLTELSQSRLSTNPLRILDDKVDGQLPFISDAPQIEQFLDAEQQALNTWLQ 240 + YLT +K +LTELSQ RL NPLRILDDK+D + F+ +AP+I FLDA + + L+ Sbjct 181 KDYLTPYKLELTELSQKRLEKNPLRILDDKIDQKKSFVKNAPKITDFLDASAKQDSELLK 240 Query 241 QQLTQQQVPFEWNPTLVRGLDYYTGVVFEFVKDDTTVLAGGVYDNLVEELGGTPTKALGF 300 QL + + FEW LVRGLDYYTG VFE+VK+ T+LAGGVYDNLVEEL PT ALGF Sbjct 241 TQLKKHNISFEWTDNLVRGLDYYTGFVFEYVKNQDTILAGGVYDNLVEELSSNPTPALGF 300 Query 301 ACGIERSINCLSAVKKQAILANQPPRLLVIGLTEAALEKLLQLSLGWRAYHPVTIYPKVI 360 ACGIER INCL KK IL +P ++LVI L E ALE+L+ L+ WR Y+ VTIYPKVI Sbjct 301 ACGIERLINCLEIDKKAFILNTKPKQMLVICLFEEALEELVWLAKLWREYNQVTIYPKVI 360 Query 361 RIINGIRAAQRLGYRFLGVIGGNNLEQQTITVKDLATEQQTTYTWDEFRQRQVL 414 ++ NGIR A RLGY F+G++G + +++ IT+K+L ++QQT YTW+E +R V Sbjct 361 KVDNGIRLANRLGYTFIGIVGKTDFDKKAITIKNLVSKQQTIYTWNELGERNVF 414 Lambda K H a alpha 0.320 0.136 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 47943577 Query= gi|13507785|ref|NP_109734.1| aspartyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=557 Score E Sequences producing significant alignments: (Bits) Value gi|12044886|ref|NP_072696.1| aspartyl-tRNA synthetase (aspS) [Myc... 823 0.0 gi|12044988|ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycopl... 72.4 3e-15 >gi|12044886|ref|NP_072696.1| aspartyl-tRNA synthetase (aspS) [Mycoplasma genitalium G-37] Length=550 Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/550 (69%), Positives = 461/550 (84%), Gaps = 1/550 (0%) Query 8 CFKQRVFIGNLTSEHLNKTVTIAGWVKRIKKLGELNFVIVGDKTNTIQVTCKNKEQVKYL 67 CF QR+ IG++++E LNKT+ I GW+KRIKKLGE+NF+IVGDK+ TIQVTCK+KEQ++ L Sbjct 2 CFNQRILIGSISTEQLNKTIVIIGWIKRIKKLGEINFIIVGDKSGTIQVTCKDKEQIQQL 61 Query 68 TREDLVIVKGKLKRLDSVRFEITNPTITLFAKSKTPPLIIEDKTDALEEVRLRYRYLDLR 127 TRED+VIVK KL+RLDSVRFE+ NPTI LF+KSKTPPLIIED+TDALEEVRL+YRYLDLR Sbjct 62 TREDIVIVKAKLQRLDSVRFELINPTIKLFSKSKTPPLIIEDETDALEEVRLKYRYLDLR 121 Query 128 RPVMQKRLALRHKVTLAVRNWLDQMGFIEVETPTLTKSTPEGARDFLVPARIREHSFYAL 187 R +MQKRL LRH+ LA+RNW +Q GFIE+ETPTL+KSTPEGA+DFLVPARIR+ FYAL Sbjct 122 RRLMQKRLLLRHQFILAIRNWFNQQGFIEIETPTLSKSTPEGAQDFLVPARIRKDCFYAL 181 Query 188 PQSPQIYKQLLMVGGTEKYFQIAHVYRDEDSRKDRQPEHTQIDLEVAFYTKEMVMDLIQR 247 QSPQIYKQLLM+ G EKYFQIA VYRDEDSRKDRQPEHTQID E++F ++M+M+L+++ Sbjct 182 VQSPQIYKQLLMIAGVEKYFQIARVYRDEDSRKDRQPEHTQIDFEISFCNQKMIMNLVEK 241 Query 248 LFVDVFRQVLNIKLKKPFPVLKFAEAFNRFGSDKPDLRYGFELEDCTDLFQDSPNQFTNL 307 LF VF V IK+KK FPV KF+E F RFGSDKPDLRYGFE++D T LFQD NQFT L Sbjct 242 LFFSVFLDVFQIKIKKTFPVFKFSELFERFGSDKPDLRYGFEIKDFTSLFQDHQNQFTKL 301 Query 308 INAGGIVGGIQLPNLYLDEVSFKALRKLAKDNGVSLEFYSDKASSLKQPLDLPLAGTILL 367 I A GI+GGI+L N+ L KALRK+AKD+ VSLE ++ S+LK + T+LL Sbjct 302 IEAKGIIGGIELTNIELSTDKIKALRKIAKDHDVSLEVHNKNNSTLKTSIKCDEKNTLLL 361 Query 368 VAHKSKTQAWTALGAIRNELKYHLNLVKPNQYSFCWIVDFPLYEFDEKEQKWVSAHNMFS 427 VA+KSK +AWTALGAIRNELKYHL++VKPNQYSFCW+VDFPLY+FDEK +W+S HN+FS Sbjct 362 VANKSKKKAWTALGAIRNELKYHLDIVKPNQYSFCWVVDFPLYDFDEKTNQWISNHNIFS 421 Query 428 NPQPQWLVNFENHKAEALSEQYDLVLNGFELGSGSIRIHDPEVQTRLMQSLGVDPQQFGF 487 P+ +W+ NFE++K EALSEQ+DLVLNGFE+GSGSIRI+DP VQ RLM SL +DP +F F Sbjct 422 KPKQEWIDNFESNKNEALSEQFDLVLNGFEIGSGSIRINDPIVQKRLMNSLNIDPNKFAF 481 Query 488 VMEAYQYGAPVHAGMGLGLDRLMMIINNVDNIREVMAFPKNAQGIEMHTNAPDQVDIKDI 547 ++EAYQYGAPVH GMGLG+DRLMMI+N DNIREV+AFPKN GIE+HTNAPD++D K+ Sbjct 482 LLEAYQYGAPVHGGMGLGIDRLMMILNQTDNIREVIAFPKNNHGIEVHTNAPDKID-KEE 540 Query 548 TTIWSKHPVK 557 W K VK Sbjct 541 VKWWIKELVK 550 >gi|12044988|ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycoplasma genitalium G-37] Length=490 Score = 72.4 bits (176), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 133/292 (46%), Gaps = 35/292 (12%) Query 19 TSEHLNK--TVTIAGWVKRIKKLGELNFVIVGDKTNTIQVTCKNKEQVK-------YLTR 69 + E L K TV++AG + I++ F+I+ D +Q+ K K ++ Sbjct 49 SEEELKKKATVSLAGRIIAIRQ----TFLIIQDFDGQVQLYINKKIHPKLFDYFNEFVDI 104 Query 70 EDLVIVKGKLKRLDSVRFEITNPTITLFAKSK-TPPLIIEDKTDALEEVRLRYRYLDLRR 128 D ++V GK + + + + AK PP TD E R R R+LDL Sbjct 105 GDQIVVSGKPMLTKTKVLTLAVEEMKIIAKCLLVPPEKWHGLTDI--ETRARKRFLDLTY 162 Query 129 PVMQKRLAL-RHKVTLAVRNWLDQMGFIEVETPTLTKST-PEGARDFLVPARIREHSFYA 186 + + + L R K+ ++R++LDQ GFIEVETPTL A+ F + FY Sbjct 163 NLAMRDVFLKRTKIIKSIRSFLDQNGFIEVETPTLQAVLGGANAKPFKTHYNALKADFY- 221 Query 187 LPQSPQIYKQLLMVGGTEKYFQIAHVYRDEDSRKDRQPEHTQIDLEVAFYTKEMVMDLIQ 246 L + +I + L++GG K +++ ++R+E PE T I++ A+ E+++ L++ Sbjct 222 LRIANEIALKKLIIGGFNKVYEMGKMFRNEGVDTTHNPEFTSIEIYQAYADFEVMLVLVE 281 Query 247 RLFVDVFRQVLN----------IKLKKPFPVLKFAEAFNR-----FGSDKPD 283 +L + + LN I LK PF + E + F S K D Sbjct 282 KL-IQSLCESLNQFSFNWNNKTINLKTPFHKITMVELIKKVTGIDFNSVKDD 332 Lambda K H a alpha 0.321 0.137 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 67301178 Query= gi|13507786|ref|NP_109735.1| similar to nicotinate phosphoribosyl transferase [Mycoplasma pneumoniae M129] Length=451 Score E Sequences producing significant alignments: (Bits) Value gi|12044887|ref|NP_072697.1| hypothetical protein MG037 [Mycoplas... 634 0.0 >gi|12044887|ref|NP_072697.1| hypothetical protein MG037 [Mycoplasma genitalium G-37] Length=450 Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust. Identities = 300/450 (67%), Positives = 363/450 (81%), Gaps = 1/450 (0%) Query 1 MVQTPSEINTHLKHLLACDAYKLSHRLMYPNDTTNLYSCLTARGGRGGFPNFVWNHEFAK 60 M + SEI HLK+LLACDAYKLSHRLMYP DT NLYS LTARG G F FVWNH+FAK Sbjct 2 MDKRTSEIEFHLKNLLACDAYKLSHRLMYPQDTQNLYSMLTARGVYGDFKEFVWNHDFAK 61 Query 61 KIILEVFGNFCDSVLAVQNDPGLAQALTDKVTTVFGDPQFGLEFTQHICYLANFLKQHHQ 120 +I+L VF F +SV+ V+ + LA ALTDK+ +VF D + EFTQHIC+LA+FL+++ + Sbjct 62 EILLNVFNGFVNSVIEVKKNKLLAAALTDKLVSVFNDHELANEFTQHICHLASFLEKNKK 121 Query 121 LPLTVKIHQSSEGLAFRTPLVTITGSDQMVPELVWLVNYFETVLLENIWLYQTTLTVAQS 180 +PL KIH+S + L FRTPL+TI G + + VWLVNYFETVLLENIWL+QT TVA+ Sbjct 122 MPLVAKIHESDQSLPFRTPLITIEGVENIPNNFVWLVNYFETVLLENIWLFQTASTVAKR 181 Query 181 LKLLLERYANETADNTEFTHFQCHDFSMRGMSSLQSALYVANAHLQYFSGSDTILGGVAA 240 +K LLE+YA ETAD T F +FQCHDFSMRGMSSLQSALYVA AHLQYF+GSDTILGG + Sbjct 182 IKSLLEKYAKETADETSFINFQCHDFSMRGMSSLQSALYVARAHLQYFTGSDTILGGDNS 241 Query 241 KSILASEHSVMCADGQEGELNTFKRLLEQFPNKNLSLVIDSYDMWHVLDNILPQLKDLVL 300 +SILASEHSVMCADG + EL TF+RLLE+F +K LSLVIDSYDMW+VLDNI+P+LK+L+L Sbjct 242 RSILASEHSVMCADGSKHELKTFQRLLEKFKDKKLSLVIDSYDMWNVLDNIIPRLKNLIL 301 Query 301 QRQEKLYLRPDSGNFETLICQGKRFNPEDKTTWGVIDYLDYHFGSTVNQKGYKVLNQKLG 360 R LYLR DSGN++TLIC + +DK+TW +IDYLD+HF ST+N+KGYKVLN+K+G Sbjct 302 MRGATLYLRADSGNYQTLIC-NPNYKKQDKSTWAMIDYLDHHFSSTINKKGYKVLNKKIG 360 Query 361 IVYGDGITYERIEYILEQLKQRGFCSSNIVFGVGSTTYQNLNRDTLGFVYKLTAIKKGNT 420 I+YGDGITY++IE+IL LK G+CSSNI+FGVGS+TYQNLNRDTLGFVYKLTAIK+ N Sbjct 361 IIYGDGITYQKIEWILNCLKNHGYCSSNIIFGVGSSTYQNLNRDTLGFVYKLTAIKRNNR 420 Query 421 WHDVTKSPITDPTKQSIGGRFDNPNLIQVY 450 W V K+PITD +K S GGR+ LI VY Sbjct 421 WIGVKKTPITDLSKSSKGGRYKTKRLITVY 450 Lambda K H a alpha 0.321 0.137 0.416 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 53145666 Query= gi|13507787|ref|NP_109736.1| membrane export protein family [Mycoplasma pneumoniae M129] Length=518 Score E Sequences producing significant alignments: (Bits) Value gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 431 2e-149 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 434 2e-148 gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 127 7e-33 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 431 bits (1109), Expect = 2e-149, Method: Compositional matrix adjust. Identities = 235/507 (46%), Positives = 327/507 (64%), Gaps = 35/507 (7%) Query 22 VPKVPEKLFGFVNQGFFPKLNPKGLNIADNVASLFEQYSLKQASLKDFDILLEKKNDIVL 81 +PKVP+ F F+N+ FFP+L+PKGLNI +++ +F QY+LK+ LKDF++ L KKNDIV+ Sbjct 1 MPKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVI 60 Query 82 EHKVRYNFALQFHFETTYVGTGGEINLQFALQASTTNFSSLEELQASFSKTGDNLTAQLF 141 + K+RY+F ++ FE Y G +NLQF L+A T+NF +L+ELQ SF+ G++L QLF Sbjct 61 KDKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLF 118 Query 142 WKPTVTKLVS-GENDLTHIAQTAIGESLFDSRVDLSASIINSEATLKTAEATFTTQVLNP 200 WKP + KLV +NDLT IA+TA+ +SLF S ++ S++ + L A+ F +++ P Sbjct 119 WKPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEP 178 Query 201 FKAEREKALAIKKAEEEKIKKELEEQKKRQE-----------ELSKQQRDKEALQKSLWN 249 FK EREKA KA+ E+ ++ L E++++QE L +QQ E KS N Sbjct 179 FKKEREKA----KADYEEQQRILAEERRKQEEELKRKEEEAKRLKEQQ---EQFNKSFEN 231 Query 250 FQEFISYWTGQGKDVKQKEQFIQALEAAFSTNWNEVFNLLIAGFRSAIQTYYKDGKADQS 309 +EF YW Q KDV K Q I AL+ +F+ + N+ F+LLI F A YYK+ K D+S Sbjct 232 AKEFKDYWKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDES 291 Query 310 QNAKIAFGEKGIQFPKSGPGLDGIFMSDFLRGNLTGNAHFDLKLKKVEVKNTQGKDAQGN 369 +NAK AF EKGIQFP+ G L+G++MSD+LRG LT L L ++++N + Sbjct 292 ENAKKAFSEKGIQFPRQG--LEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENN----- 344 Query 370 DKKASINWQAKQNNFPFRQVNPWDFSFEVELKYEGSYGLYPGARFLNLFGSLGIPNDWKG 429 +I+W K N FRQ P+ F FE+++KY+G Y L + F GIP+ W G Sbjct 345 ---PTIDW--KNNGIEFRQHYPYKFKFEIDIKYQGGYKLTGLFSWFAPFS--GIPSSWNG 397 Query 430 EMSVKFVLDGKTPQWIADKPDYPGSLFKFEKNQLKFTPHVKEHVHVENKQFMEKLKSQNL 489 EM VKF++DG + DYPGSLF+F+ NQL FT HVKE + V++ +FM+ LK QNL Sbjct 398 EMDVKFIVDGDLDYNLVQNTDYPGSLFQFKDNQLLFTLHVKEQIKVQDGKFMDLLKQQNL 457 Query 490 HNLELATGATKPPVVDLASYLHYLILN 516 HNL+L GATKPPVVDLASYLHYL+LN Sbjct 458 HNLDLRNGATKPPVVDLASYLHYLVLN 484 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 434 bits (1117), Expect = 2e-148, Method: Compositional matrix adjust. Identities = 247/542 (46%), Positives = 350/542 (65%), Gaps = 40/542 (7%) Query 1 MNELQTKVNEANNIFPVE-AF-KVPKVPEKLFGFVNQGFFPKLNPKGLNIADNVASLFEQ 58 MN+LQ +V AN IFPV+ AF K+PKVP +LF V+ FPKLNPKGLNI+DN+A+LFE+ Sbjct 124 MNQLQKQVEAANAIFPVDDAFVKLPKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFER 183 Query 59 YSLKQASLKDFDILLEKKNDIVLEHKVRYNFALQFHFETTYVGTGGE-INLQFALQASTT 117 Y+LK LK+FD+ +K D++++ KVRYNF +Q F+T YVG G INL F L+A T Sbjct 184 YNLKSIELKNFDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTV 243 Query 118 NFSSLEELQASFSKTGDNLTAQLFWKPTVTKLV-SGENDLTHIAQTAIGESLFDSRVDLS 176 NF++L++LQ +F K G++L+ QLFW PTV KL + NDLTHIA+T IGES F + V+L+ Sbjct 244 NFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLA 303 Query 177 ASIINSEATLKTAEATFTTQVLNPFKAEREKALAIKKAEEEKIKKELEEQKKRQEELS-- 234 S+I + + F +VL PFK ERE A + E+ ++++E + Q + Sbjct 304 KSVIEYDKVQPLVKQAFEERVLTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAE 363 Query 235 -------------KQQRDKEALQKSLWNFQEFISYWTGQGKDVKQKEQFIQALEAAFST- 280 K +R++EA +KS +F++F YW +GKDV +K I AL+ A +T Sbjct 364 EKRKAEEAKRNQEKARREREAYEKSFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIATP 423 Query 281 -NWNEVFNLLIAGFRSAIQTYYKDGKADQSQNAKIAFGEKGIQFPKSGPGLDGIFMSDFL 339 N F+LLI GF S ++ Y+ K D+ + K+AFGEKGIQFP++ G++G++MS+FL Sbjct 424 AYRNRTFSLLIKGFASGVERYFNANKNDK-ELKKLAFGEKGIQFPRADAGVNGLYMSNFL 482 Query 340 RGNLTGNAHFDLKLKKVEVKNTQGKDAQGNDKKASINWQAKQNNFPFRQVNPWDFSFEVE 399 R LT A F L LK ++V+NT +D Q + W K N +Q NP+ F+ ++ Sbjct 483 RHELTSKAKFSLNLKDIKVENTV-EDTQ-------LYW--KDNGIHLKQANPYKFNLNIK 532 Query 400 LKYEGSYGLYPGARFLNLFGS--LGIPNDWKGEMSVKFVLDGKTPQWIADKPDYPGSLFK 457 +KY G Y ++ + N + LGIP DW GEM++ FV++G + I DK DYPG+ F+ Sbjct 533 IKYNGWYNVH----WWNWLPAKILGIPTDWSGEMNLTFVVNGDLSE-IVDKHDYPGTFFQ 587 Query 458 F-EKNQLKFTPHVKEHVHVENKQFMEKLKSQNLHNLELATGATKPPVVDLASYLHYLILN 516 F +KN+L FT V+E + V+N FM LKSQNLHNL+LA+GATKPPVVDLASY H+++L Sbjct 588 FTDKNELLFTLAVREQIKVDNNHFMGLLKSQNLHNLQLASGATKPPVVDLASYFHFVLLT 647 Query 517 HK 518 K Sbjct 648 EK 649 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 127 bits (318), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 151/567 (27%), Positives = 240/567 (42%), Gaps = 75/567 (13%) Query 5 QTKVNEANNIFPVEAFKVPK-----VPEKLFGFVNQGFFPKLNPKGLNIADNVASLFEQY 59 Q K+ +A+ IFP PK V + L + GFFP L G N+ + V F + Sbjct 118 QQKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDF 177 Query 60 SLKQASLKDFDILLEKKNDIVLEHKVRYNFALQFHFETTYVGTGGEINLQFALQASTTNF 119 + +K+F++ L +NDI+ KVRY F ++F+ ++ F T NF Sbjct 178 RINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNF 237 Query 120 SSLEELQASFSKTGDNLTAQLFWKPTVTKLVSGENDLTHIAQTAIGESLFDSRVDLSASI 179 S +E F++ L + + K V KL +D T+IA + + +DL+ SI Sbjct 238 SDIENFNEIFNRKP-ALQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLEIDLNKSI 296 Query 180 INSEATLKTAEATFTTQVLNPFKAEREKALAIKKAEEEKIKKELEEQ--------KKRQE 231 + L+ A+ F + + P +R +A + E+ +I +E Q K+ +E Sbjct 297 YALD--LENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKE 354 Query 232 ELSKQQRDKEA---LQKSLWNFQEFISYW-TGQGK----------DVKQKEQFIQALEAA 277 + K +R KEA LQK+L N F +++ +GQ + +V+ +E +AL+ + Sbjct 355 KAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQIS 414 Query 278 FST--NWNEVFNLL------IAGFRSAIQTYYKDGKADQSQNAKIAFG-------EKGIQ 322 +S W +LL + + I +D KA Q AFG ++ + Sbjct 415 YSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQ-----YAFGLGPNTSEQQLGR 469 Query 323 FPKSGPGLDGIFMSDFLRGNLTGNAHFDLKLKKVEVKNTQGKDAQGNDKKASINWQAKQN 382 G G +GI MSD+LR L F L K N G NDKK W + Sbjct 470 VTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIG---DANDKKHI--WISPHT 524 Query 383 NFPFRQVN--------PWDFSFEVELKYEGSYGLYPGARFLNLFGSLGIPNDWKGEMSVK 434 R+ + F + + EG + A + + IP W G++ V Sbjct 525 FKLNREYGDGERFKGKAYRFKLSISFELEG----HLTAHWWTIAFRGSIPGSWSGKLRVT 580 Query 435 FVLDGKTPQWI--ADKPDYPGSLFKFEKNQLKFTPHVKEHV-HVENKQFMEKLKSQNLHN 491 DG P + P Y + + +L F PH + V V N+ L+SQNLHN Sbjct 581 HEFDGDVPYYRLHTTPPQYRLT----DDMKLLFVPHSIQRVTAVGNESINGLLRSQNLHN 636 Query 492 LELATGATKPPVVDLASYLHYLILNHK 518 LE + P +DL SY+ Y I + K Sbjct 637 LERQSYEATAP-IDLISYMLYAISDKK 662 Lambda K H a alpha 0.315 0.132 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 62210172 Query= gi|13507788|ref|NP_109737.1| membrane export protein family [Mycoplasma pneumoniae M129] Length=632 Score E Sequences producing significant alignments: (Bits) Value gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 498 1e-171 gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 449 9e-155 gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 169 9e-47 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 498 bits (1283), Expect = 1e-171, Method: Compositional matrix adjust. Identities = 284/653 (43%), Positives = 407/653 (62%), Gaps = 33/653 (5%) Query 3 FRYKAFLLTLFASTTTLTGFIIPTLSQHGSSTDPSFVALRNNSSLSCDGKSRLLEFGNDL 62 F+ KA LL+LF++ T+T F +P + +GS TD + L + +S G S+ G D Sbjct 8 FKVKALLLSLFSAAVTITIFALPIFANNGSKTD---LGLLSKNSADFLGSSKRSLAGFDT 64 Query 63 GFSKEETDVLAKQKNWEQNYTNFKKQFEHKLLDPKSFSLTDVYNLFSGFQQSVADTVKLM 122 FS + L K+ +++QN+ +F ++F+ + + + D+YNLFSGF +SV TV LM Sbjct 65 PFSPDNLQYLEKETDYDQNFKSFTEKFKDEKITNNQLGIVDIYNLFSGFHKSVKSTVDLM 124 Query 123 NELQTQVNKANDIYPVES--FQVPKVPQKLFGFVDQGFFPKLNPKGLNIADNVASLFEKY 180 N+LQ QV AN I+PV+ ++PKVP +LF VD FPKLNPKGLNI+DN+A+LFE+Y Sbjct 125 NQLQKQVEAANAIFPVDDAFVKLPKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFERY 184 Query 181 SLKQATLKDFDIVLEKKNDIVLEHKVRYNFALQFHFETTYIGSGGE-INLQFALQASTTN 239 +LK LK+FD+ +K D++++ KVRYNF +Q F+T Y+G G INL F L+A T N Sbjct 185 NLKSIELKNFDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVN 244 Query 240 FSSLEELQASFSKVGNNLTAQLFWKPVVNKLT-SGENDLTHIAQTAVGESLFDSRVDLTS 298 F++L++LQ +F KVGN+L+ QLFW P VNKLT + NDLTHIA+T +GES F + V+L Sbjct 245 FANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAK 304 Query 299 SIINNEAAIKTTQQQFETEVLALFKAEREKALAEYKAEQERIAKELEEQRKELERL---- 354 S+I + +Q FE VL FK ERE A Y+ EQ R+ +E + Q +EL R Sbjct 305 SVIEYDKVQPLVKQAFEERVLTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAEE 364 Query 355 -----------KKEQQNKQELVESLYNVANFVSYWEKRGKDVTDKKQLIQALKSAFATNW 403 +K ++ ++ +S + +F YW +GKDVT K LI ALK+A AT Sbjct 365 KRKAEEAKRNQEKARREREAYEKSFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIATPA 424 Query 404 --NEVFQLLTAGMREGIKEYYKHNKPDQSANAKKAFGQNGLAFPR--TGFDGIYMSDWLR 459 N F LL G G++ Y+ NK D+ K AFG+ G+ FPR G +G+YMS++LR Sbjct 425 YRNRTFSLLIKGFASGVERYFNANKNDKEL-KKLAFGEKGIQFPRADAGVNGLYMSNFLR 483 Query 460 GELRNKGNINLHLKQNETTVKKIRDDISIEWNESKGGIEFHQTYPYWFEFEVNFKYIGGY 519 EL +K +L+LK + V+ +D + W ++ GI Q PY F + KY G Y Sbjct 484 HELTSKAKFSLNLK--DIKVENTVEDTQLYWKDN--GIHLKQANPYKFNLNIKIKYNGWY 539 Query 520 SLNWWDAIWAKVAGIPGSWKGEMNLKLVIDGEIHKWMVTKPDYPRTFFQFDDQFDKLWFT 579 +++WW+ + AK+ GIP W GEMNL V++G++ + +V K DYP TFFQF D+ ++L FT Sbjct 540 NVHWWNWLPAKILGIPTDWSGEMNLTFVVNGDLSE-IVDKHDYPGTFFQFTDK-NELLFT 597 Query 580 LHVSQEISVRDESFMNLLKKQGLDKLDLRTGSTKPPVVDLASYLHYLILADKS 632 L V ++I V + FM LLK Q L L L +G+TKPPVVDLASY H+++L +KS Sbjct 598 LAVREQIKVDNNHFMGLLKSQNLHNLQLASGATKPPVVDLASYFHFVLLTEKS 650 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 449 bits (1156), Expect = 9e-155, Method: Compositional matrix adjust. Identities = 235/498 (47%), Positives = 337/498 (68%), Gaps = 27/498 (5%) Query 143 VPKVPQKLFGFVDQGFFPKLNPKGLNIADNVASLFEKYSLKQATLKDFDIVLEKKNDIVL 202 +PKVPQ F F+++ FFP+L+PKGLNI +++ +F +Y+LK+ LKDF++ L KKNDIV+ Sbjct 1 MPKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVI 60 Query 203 EHKVRYNFALQFHFETTYIGSGGEINLQFALQASTTNFSSLEELQASFSKVGNNLTAQLF 262 + K+RY+F ++ FE Y G +NLQF L+A T+NF +L+ELQ SF+ GN+L QLF Sbjct 61 KDKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLF 118 Query 263 WKPVVNKLTS-GENDLTHIAQTAVGESLFDSRVDLTSSIINNEAAIKTTQQQFETEVLAL 321 WKP++NKL +NDLT IA+TAV +SLF S ++ +S++ + + + +FE E++ Sbjct 119 WKPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEP 178 Query 322 FKAEREKALAEYKAEQERIAKELEEQRKELE-----------RLKKEQQNKQELVESLYN 370 FK EREKA A+Y+ EQ+RI L E+R++ E RLK++Q+ + +S N Sbjct 179 FKKEREKAKADYE-EQQRI---LAEERRKQEEELKRKEEEAKRLKEQQE---QFNKSFEN 231 Query 371 VANFVSYWEKRGKDVTDKKQLIQALKSAFATNWNEVFQLLTAGMREGIKEYYKHNKPDQS 430 F YW+ + KDVTDK QLI ALK++FA + N+ F LL + +YYK+NK D+S Sbjct 232 AKEFKDYWKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDES 291 Query 431 ANAKKAFGQNGLAFPRTGFDGIYMSDWLRGELRNKGNINLHLKQNETTVKKIRDDISIEW 490 NAKKAF + G+ FPR G +G+YMSDWLRG+L + +I L+L ++ ++ +I+W Sbjct 292 ENAKKAFSEKGIQFPRQGLEGLYMSDWLRGKLTSYTDIKLNL--TSIKIENKENNPTIDW 349 Query 491 NESKGGIEFHQTYPYWFEFEVNFKYIGGYSLNWWDAIWAKVAGIPGSWKGEMNLKLVIDG 550 GIEF Q YPY F+FE++ KY GGY L + +A +GIP SW GEM++K ++DG Sbjct 350 --KNNGIEFRQHYPYKFKFEIDIKYQGGYKLTGLFSWFAPFSGIPSSWNGEMDVKFIVDG 407 Query 551 EIHKWMVTKPDYPRTFFQFDDQFDKLWFTLHVSQEISVRDESFMNLLKKQGLDKLDLRTG 610 ++ +V DYP + FQF D ++L FTLHV ++I V+D FM+LLK+Q L LDLR G Sbjct 408 DLDYNLVQNTDYPGSLFQFKD--NQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNG 465 Query 611 STKPPVVDLASYLHYLIL 628 +TKPPVVDLASYLHYL+L Sbjct 466 ATKPPVVDLASYLHYLVL 483 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 169 bits (429), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 181/681 (27%), Positives = 309/681 (45%), Gaps = 77/681 (11%) Query 1 MRFRYKAFL-LTLFASTTTLTGFIIPTLSQHGSSTDPSFVALRNNSSLSCDGKSRLLEFG 59 M+ +K FL L L A+ L G ++ ++TD S ++S++ + +++ L Sbjct 1 MKTIHKLFLGLCLPATLGPLLGIVV-------TNTDQSIKFTSKSNSINKNNQNKELALL 53 Query 60 NDLGFSKEETDVLAKQKNWEQNYTNFKKQFEH-KLLDPKSFSLTDVYNLFSGFQQSVADT 118 D ++ + D + ++E+ + NFK ++ L+ FSL DVY+L GF+QS+ Sbjct 54 RDNLMNEAKVD---EPLSFEKRFENFKNKYSDIHSLNNSVFSLHDVYDLLGGFKQSLTTF 110 Query 119 VKLMNELQTQVNKANDIYPVESFQVPK-----VPQKLFGFVDQGFFPKLNPKGLNIADNV 173 + Q ++ A+ I+P PK V L + GFFP L G N+ + V Sbjct 111 FDEVIAQQQKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAV 170 Query 174 ASLFEKYSLKQATLKDFDIVLEKKNDIVLEHKVRYNFALQFHFETTYIGSGGEINLQFAL 233 F + + +K+F++ L +NDI+ KVRY F ++F+ + ++ F Sbjct 171 FQNFTDFRINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDF 230 Query 234 QASTTNFSSLEELQASFSKVGNNLTAQLFWKPVVNKLTSGENDLTHIAQTAVGESLFDSR 293 T NFS +E F++ L + + K V+KL+ +D T+IA + + Sbjct 231 ILKTDNFSDIENFNEIFNR-KPALQFRFYTKINVHKLSFNGSDSTYIANILLQDQFNLLE 289 Query 294 VDLTSSIINNEAAIKTTQQQFETE-VLALFKAEREKALAEYKAEQERIA----------- 341 +DL SI ++ +++F+ E V L++ RE LA ++ EQ RIA Sbjct 290 IDLNKSIY--ALDLENAKERFDKEFVQPLYQKRREAKLA-WEEEQRRIAEEQRRQEEERA 346 Query 342 ---KELEEQRKELERLKKEQQNKQELVESLYNVANFVSYWEKR---GKD-----VTDKKQ 390 KEL+E+ ++ +R+K+ Q N Q+ + +L NF S + R G D V ++ Sbjct 347 RILKELKEKAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREG 406 Query 391 LIQALKSAFATNWNEVFQLLTAGMREGI-----KEYYKHNKPDQSANAKKAFGQNG---- 441 L +AL+ +++ F + G +EG K + + D++ G N Sbjct 407 LFKALQISYSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQYAFGLGPNTSEQQ 466 Query 442 ---LAFPRTGFDGIYMSDWLRGELRNKGNINLHLKQN-ETTVKKIRDDISIEW------- 490 + P G++GI MSDWLR L + L +N E + +D W Sbjct 467 LGRVTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFK 526 Query 491 -NESKGGIEFHQTYPYWFEFEVNFKYIGGYSLNWWDAIWAKVAGIPGSWKGEMNLKLVID 549 N G E + Y F+ ++F+ G + +WW + IPGSW G++ + D Sbjct 527 LNREYGDGERFKGKAYRFKLSISFELEGHLTAHWWTIAFR--GSIPGSWSGKLRVTHEFD 584 Query 550 GEI--HKWMVTKPDYPRTFFQFDDQFDKLWFTLHVSQEIS-VRDESFMNLLKKQGLDKLD 606 G++ ++ T P Y T DD KL F H Q ++ V +ES LL+ Q L L+ Sbjct 585 GDVPYYRLHTTPPQYRLT----DDM--KLLFVPHSIQRVTAVGNESINGLLRSQNLHNLE 638 Query 607 LRTGSTKPPVVDLASYLHYLI 627 ++ P +DL SY+ Y I Sbjct 639 RQSYEATAP-IDLISYMLYAI 658 Lambda K H a alpha 0.317 0.133 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 77364620 Query= gi|13507789|ref|NP_109738.1| glycerol kinase [Mycoplasma pneumoniae M129] Length=508 Score E Sequences producing significant alignments: (Bits) Value gi|12044888|ref|NP_072698.1| glycerol kinase (glpK) [Mycoplasma g... 797 0.0 >gi|12044888|ref|NP_072698.1| glycerol kinase (glpK) [Mycoplasma genitalium G-37] Length=508 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/508 (74%), Positives = 437/508 (86%), Gaps = 0/508 (0%) Query 1 MDLKQQYILALDEGTSSCRTIVFDKDLNQVAIAQNEFNQFFPKSGWVEQDPLEIWSVQLA 60 MDLK+QYI+ALDEGTSSCR+IVFD +LNQ+AIAQNEFN FFP SGWVEQDPLEIWS QLA Sbjct 1 MDLKKQYIIALDEGTSSCRSIVFDHNLNQIAIAQNEFNTFFPNSGWVEQDPLEIWSAQLA 60 Query 61 TMQSAKNKAQIKSNNIAAVGITNQRETIVLWNKENGLPVYNAIVWQDQRTASLCDKLNQD 120 TMQSAKNKAQIKS+ + AVGITNQRETIVLWNKENGLPVYNAIVWQDQRTA+LC K N+D Sbjct 61 TMQSAKNKAQIKSHEVIAVGITNQRETIVLWNKENGLPVYNAIVWQDQRTAALCQKFNED 120 Query 121 TKIKEFVKKHTGLPINPYFSATKIAWILENVPLAQKMLKEDKLLAGTIDTWLIWKLTGGK 180 I+ VK+ TGLPINPYFSATKIAWIL+NVPLA+K++++ KLL GTID+WLIWKLT GK Sbjct 121 KLIQTKVKQKTGLPINPYFSATKIAWILKNVPLAKKLMEQKKLLFGTIDSWLIWKLTNGK 180 Query 181 MHVTDVSNASRTLLFDITTMTWSQELGDIFKVPLSILPKVMPSNAHFGDIVPSHWSTSAT 240 MHVTDVSNASRTLLFDI M WS+EL D+F+VP+SILPKV+ SNA+FGDI +HWS++A Sbjct 181 MHVTDVSNASRTLLFDIVKMEWSKELCDLFEVPVSILPKVLSSNAYFGDIETNHWSSNAK 240 Query 241 GMVPIRGVAGDQQAALFGQLCVEPAMVKNTYGTGCFMLMNIGNELKYSQHNLLTTVAWQL 300 G+VPIR V GDQQAALFGQLC EP MVKNTYGTGCF+LMNIG++ S+HNLLTTVAWQL Sbjct 241 GIVPIRAVLGDQQAALFGQLCTEPGMVKNTYGTGCFVLMNIGDKPTLSKHNLLTTVAWQL 300 Query 301 ENQKPVYALEGSVFVAGAALKWLRDSLKVMYSAAESDFYAKLAQKEEQEVVFVPAFTGLG 360 EN PVYALEGSVFVAGAA+KWLRD+LK++YS ESDFYA+LA++ EQ +VFVPAF+GLG Sbjct 301 ENHPPVYALEGSVFVAGAAIKWLRDALKIIYSEKESDFYAELAKENEQNLVFVPAFSGLG 360 Query 361 APYWDASARGAIFGIEANTKREHLVKATLEAIAFQANDLIKAMASDLNSSIKKIKADGGA 420 AP+WDASARG I GIEA+TKREH+VKA+LE+IAFQ NDL+ AMASDL I IKADGG Sbjct 361 APWWDASARGIILGIEASTKREHIVKASLESIAFQTNDLLNAMASDLGYKITSIKADGGI 420 Query 421 CNSNYLMQFQADIANLEVIIPKNVETTTMGAAFLAGLAVNYWKDTKQLEKLTGIAKQFKS 480 SNYLMQFQADIA++ V IPKN ETT +G FLAGLA +WKD QLEKLT + K+FKS Sbjct 421 VKSNYLMQFQADIADVIVSIPKNKETTAVGVCFLAGLACGFWKDIHQLEKLTTLDKKFKS 480 Query 481 QMNQTVREKKSKRWNEAVKRTLKWASLD 508 M+ +R+ K W++AV+R LKW +D Sbjct 481 TMDPNIRKTKINSWHKAVERALKWKEID 508 Lambda K H a alpha 0.317 0.130 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 60809042 Query= gi|13507790|ref|NP_109739.1| glycerol-3-phospate dehydrogenase [Mycoplasma pneumoniae M129] Length=384 Score E Sequences producing significant alignments: (Bits) Value gi|12044889|ref|NP_072699.1| hypothetical protein MG039 [Mycoplas... 493 2e-177 >gi|12044889|ref|NP_072699.1| hypothetical protein MG039 [Mycoplasma genitalium G-37] Length=384 Score = 493 bits (1270), Expect = 2e-177, Method: Compositional matrix adjust. Identities = 240/384 (63%), Positives = 304/384 (79%), Gaps = 0/384 (0%) Query 1 METRDVLIVGGGVIGCATAYELSQYKLKVTLVEKHHYLAQETSHANSGVIHTGIDPNPHK 60 M+T DVLIVGGGVIG + AYELSQYKLKV L+EK+ +L ETS ANSGVIH+GIDPNP+K Sbjct 1 MQTIDVLIVGGGVIGTSCAYELSQYKLKVALLEKNAFLGCETSQANSGVIHSGIDPNPNK 60 Query 61 LTAKYNILGKKLWLNTYFKRLGFPRQKIRTLIVAFNEMEREQLEVLKQRGIANQINLEDI 120 LTAKYNILG+K+W+ +FK+L FPR+KI TLIVAFN E+ QL +LK+RGI N I +E+I Sbjct 61 LTAKYNILGRKIWIEDWFKKLIFPRKKIATLIVAFNNEEKLQLNLLKERGIKNSIPVENI 120 Query 121 QMLSKEETLKLEPYVNPEIVAGLKIEGSWAIDPVLASKCLALAAQQNKVQICTNTEVTNI 180 Q+L +++TL EP++NP +VA LK+EGSW IDP++A+KCLALA+ QN V I +N +VT I Sbjct 121 QILDQQQTLLQEPFINPNVVASLKVEGSWLIDPLIATKCLALASLQNNVAIYSNKKVTKI 180 Query 181 SKQVDGTYLVWTNNETTPSFKVKKIIDAAGHYADYLAHLAKADDFEQTTRRGQYVVVTNQ 240 D +LV+ NNETTP FK KK+IDAAGHYAD+LA + D+F+QTTR+GQY+V+ NQ Sbjct 181 EIDSDDDFLVFINNETTPQFKTKKLIDAAGHYADWLAETTQVDNFKQTTRKGQYLVLKNQ 240 Query 241 GELHLNSMVFMVPTIHGKGVIVSPMLDGNFLVGPTALDGVDKEATRYITKDAPCMLTKIG 300 L +N+++FMVPTIHGKGV+V+ MLDGN LVGP A++G++K TR I D+ + IG Sbjct 241 NNLKINTIIFMVPTIHGKGVVVAEMLDGNILVGPNAVEGIEKNKTRSIDLDSINQIKTIG 300 Query 301 KHMVPSLNINNALISFAGSRPIDKATNDFIIRVAHNDPDFVILGGMKSPGLTAAPAIVRE 360 K MVPSL N++ SFAGSR ID TNDF+IR A ++P+F+ILGGMKSPGLT++PAI + Sbjct 301 KKMVPSLQFENSIYSFAGSRAIDIETNDFVIRTAKSNPNFIILGGMKSPGLTSSPAIAKR 360 Query 361 AVRLLNWKLTKKPNWNGKYNLPWI 384 AV LLN KL KK NWN YNL WI Sbjct 361 AVELLNLKLKKKINWNPNYNLSWI 384 Lambda K H a alpha 0.318 0.135 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44017272 Query= gi|13507791|ref|NP_109740.1| putative lipoprotein, MG040 homolog, from M. genitalium [Mycoplasma pneumoniae M129] Length=657 Score E Sequences producing significant alignments: (Bits) Value gi|12044890|ref|NP_072700.1| lipoprotein, putative [Mycoplasma ge... 677 0.0 >gi|12044890|ref|NP_072700.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=591 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/508 (68%), Positives = 417/508 (82%), Gaps = 16/508 (3%) Query 1 MFGKGLVKKSLLFFSGVSTMAVFLVSCGATRIWESSIQLLVSNDEATLADKSFSEMSYEG 60 +FGK + KKSL SG+S++AVFL +CGAT+I++SS+QLLVS++ +TLADKSFS+MSYEG Sbjct 5 LFGKLVFKKSLFLLSGMSSLAVFLTACGATKIFDSSVQLLVSDNFSTLADKSFSQMSYEG 64 Query 61 IRRYFRSQKHIELPSPNSSLLQDGNGLWKRPGRTLSDRIATFKNIKNDGSDVIVATGFNQ 120 IR +F+ K ++LP +SS LQ+GNGLWKRPG TLSDRIATF NIKNDGSDVIVATGFNQ Sbjct 65 IRSFFKKSKGVDLPEADSSQLQEGNGLWKRPGFTLSDRIATFNNIKNDGSDVIVATGFNQ 124 Query 121 QEALQAISSDDRRYLADKNDLAKVGFIFVDGQIEKEYNVINKTPQFRSTPLNISSVAFRS 180 QE+LQAI+SDD R+ +DK LAK GFIFVDG IEKE+N N PQF+STP NISSVAFRS Sbjct 125 QESLQAITSDDIRFQSDKESLAKTGFIFVDGAIEKEFNKRNGVPQFKSTPTNISSVAFRS 184 Query 181 DDGSFLTGVATAVYLNLNQDYFLKKNGATNNSS--QDLTVSGFVGVPIPSTLSFLNGFRL 238 DDGSFLTGVATAVYLNLNQ+YFL K+G + NSS +LTVSGFVG+ +PSTLSFLNGFRL Sbjct 185 DDGSFLTGVATAVYLNLNQEYFLDKSGWSTNSSNNNELTVSGFVGIALPSTLSFLNGFRL 244 Query 239 GIAYFNEVIYTHLSDAETTSDNKSNSSSASNSVLVQLKQMQGNDKKIKKIKWISPKQGSD 298 GIAYFNEVIY HLSDA+ D+ + +++ +VL QL Q+ +K+IKKIKWISPKQGSD Sbjct 245 GIAYFNEVIYKHLSDAQ---DSSAQVTTSKQTVLKQL-QVANGEKRIKKIKWISPKQGSD 300 Query 299 NNSNLSIDDHKSGSFSSTEPRATTIINNLLDKGVSAIIPVAGPQVNLAVNEVARRKAHTA 358 + ++I DH+SGSFS TEPRA TI NNL+DKGV+AIIP+AGPQ NL V ++ARR+AHTA Sbjct 301 GET-INIQDHQSGSFSDTEPRAITIANNLIDKGVNAIIPIAGPQTNLVVTQIARRQAHTA 359 Query 359 IIGVDSAQELLDINQDAPDKDQLIKGNKKIIPFSSIKALDVAIENMLIAIQKGSDNNGYK 418 +IGVDSAQELLDIN DAP+KD+L GNKKIIPFSSIKALDVA+E++L ++KGS NGY+ Sbjct 360 VIGVDSAQELLDINIDAPNKDKLKMGNKKIIPFSSIKALDVAVESILSTLEKGSSQNGYQ 419 Query 419 GFGYNNIGTVGTSSVGISEAGYEFLIDPVFWKTTQS-QGKSMATNMTNLKRLSSDDTNTK 477 GFGYNNIGTV +SVG+SEAGYEFLIDPVFWK T S Q S++ +LK ++ ++ K Sbjct 420 GFGYNNIGTVKNNSVGVSEAGYEFLIDPVFWKNTSSMQAMSLS---ASLKANAASSSDNK 476 Query 478 KALKEVSTHK--NGSDKDG---IIGKYS 500 K L EV+T K NGS K+G II KY+ Sbjct 477 KKLSEVATKKNENGSTKNGSNDIIDKYA 504 Score = 89.0 bits (219), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/136 (46%), Positives = 81/136 (60%), Gaps = 16/136 (12%) Query 523 SGTEQKKNLSEVDTKKKEKESKGKTQSNGQDSGQQNGKETNDIISKYSKLLTMTTMNNKV 582 S ++ KK LSEV TKK E S +NG +NDII KY+KLLT ++ + + Sbjct 471 SSSDNKKKLSEVATKKNENGST------------KNG--SNDIIDKYAKLLTKSSSSTSM 516 Query 583 MSSKKQSSDDNSFKKTSENGDWVIKGDELTKKKSTELPAFAKGADYPTFPTEAVSVIN-G 641 + S+ N FK T +GDW I GDEL K KS+ELP F + YPTF TEA +V++ G Sbjct 517 RNGSSDSNQQN-FKTTDNDGDWTIVGDELGKYKSSELPIFTGSSSYPTFQTEAQNVLDGG 575 Query 642 STALDGKGFKWSFKQI 657 + +GFKWSFKQI Sbjct 576 ANVASTQGFKWSFKQI 591 Lambda K H a alpha 0.310 0.127 0.348 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 80843245 Query= gi|13507792|ref|NP_109741.1| phosphocarrier protein HPr [Mycoplasma pneumoniae M129] Length=88 Score E Sequences producing significant alignments: (Bits) Value gi|12044891|ref|NP_072701.1| phosphocarrier protein HPr (ptsH) [M... 145 3e-49 >gi|12044891|ref|NP_072701.1| phosphocarrier protein HPr (ptsH) [Mycoplasma genitalium G-37] Length=88 Score = 145 bits (366), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 72/88 (82%), Positives = 81/88 (92%), Gaps = 0/88 (0%) Query 1 MKKIQVVVKDPVGIHARPASIIAGEANKFKSELKLVSPSGVEGNIKSIINLMSLGIKQND 60 MKK Q V+KDPVGIHARPASI+A EA+KFKSELKLV+PSGVEGNIKSIINLMSLGI+ ND Sbjct 1 MKKFQAVIKDPVGIHARPASILASEASKFKSELKLVAPSGVEGNIKSIINLMSLGIRHND 60 Query 61 HITIKAEGTDEEEALNAIKAVLEKHQVI 88 +ITIKA+G DEEEAL AIKA LEK++VI Sbjct 61 NITIKADGADEEEALAAIKACLEKNKVI 88 Lambda K H a alpha 0.312 0.131 0.342 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4762400 Query= gi|13507793|ref|NP_109742.1| hypothetical protein MPN054 [Mycoplasma pneumoniae M129] Length=123 ***** No hits found ***** Lambda K H a alpha 0.318 0.136 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9077110 Query= gi|13507794|ref|NP_109743.1| spermidine/putrescine transport ATP-binding prot [Mycoplasma pneumoniae M129] Length=560 Score E Sequences producing significant alignments: (Bits) Value gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 840 0.0 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 183 2e-52 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 93.6 1e-21 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 80.9 9e-19 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 76.6 4e-17 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 75.5 1e-16 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 74.7 3e-16 gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 71.2 5e-15 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 68.2 6e-14 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 62.4 2e-12 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/560 (74%), Positives = 488/560 (87%), Gaps = 1/560 (0%) Query 1 MNERFLIEIEGLNKTFDDGFVSVRDINLKIKKGEFITILGPSGCGKTTTLRLLAGFEDPT 60 MNE LIEIEGLNKTFDDG+VS+RDI+L IKKGEFITILGPSGCGKTT LRLLAGFEDPT Sbjct 1 MNEHSLIEIEGLNKTFDDGYVSIRDISLNIKKGEFITILGPSGCGKTTLLRLLAGFEDPT 60 Query 61 YGKIKVNGLDIKDLPIHKRPFATVFQDYALFSHLTVYKNIAYGLKAMYTKLDPIDKLVEQ 120 YGKIKVNG+DIKD+ IHKRPFATVFQDYALFSHLTVYKNIAYGLK M+TKLD I KLV Sbjct 61 YGKIKVNGIDIKDMAIHKRPFATVFQDYALFSHLTVYKNIAYGLKVMWTKLDEIPKLVSD 120 Query 121 YHQSLLDKQHRLHKRIERLEKSNANPQLLEQLKQTVVVQQKQFKQQTETFKQKENARRDA 180 Y + L K +L ++IE+L+K+N+N Q +++LK+ + + KQ+ F+ KE RR+ Sbjct 121 YQKQLALKHLKLERKIEQLQKNNSNAQRIKKLKEKLQKLLEINKQKVIEFENKEKLRRED 180 Query 181 IQQRLVQLTKEWESLSKQKLQQLEAEKKLLDKKFEQTERKYQKDAWMATHSEMRLKQFKQ 240 I + L QLTKEW+ LS++KL+++E +K+ +DK FE+ E KY+KD W HSE+RLKQ+++ Sbjct 181 IYKNLEQLTKEWDLLSQKKLKEVEQQKQAIDKSFEKVENKYKKDPWFFQHSEIRLKQYQK 240 Query 241 EVLALKQLIKTKFKQNEPVDKLQLKLQTLKQKYAAKRQIDKEYDKLVLAYNKKDYWTSYW 300 + LK IK K E + KL +LQTLKQKYA K+ IDKEYDKLV+AYNKKDYWTSYW Sbjct 241 KKTELKADIKAT-KNKEQIQKLTKELQTLKQKYANKKAIDKEYDKLVVAYNKKDYWTSYW 299 Query 301 ETYSLQQQEAFEKRYLSRKLTKQEQHQKVCAVIELVGLKGNEDKLPEELSGGMKQRVALA 360 ETY+LQQ+EAFEKRYLSRKLTK EQ++KV VIE+VGLKG ED+LP+ELSGGMKQRVALA Sbjct 300 ETYTLQQKEAFEKRYLSRKLTKAEQNKKVSDVIEMVGLKGKEDRLPDELSGGMKQRVALA 359 Query 361 RSLVIEPDILLLDEPLSALDAKVRKNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIV 420 RSLV+EP+ILLLDEPLSALDAKVRKNLQKELQ+IH++SGLTFILVTHDQEEALVLS+RIV Sbjct 360 RSLVVEPEILLLDEPLSALDAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIV 419 Query 421 VMNEGNILQVGSPADIYDSPKTEWIANFIGQANIFKGTYLGDLKIKLHSGEVIKTDVDNN 480 VMNEGNILQVG+P DIYDSPKTEWIANFIGQANIFKGTYLG+ KI+L SGE+I+TDVDNN Sbjct 420 VMNEGNILQVGNPVDIYDSPKTEWIANFIGQANIFKGTYLGEKKIQLQSGEIIQTDVDNN 479 Query 481 YVVGKEYKILIRPEDFDIVPKNKGFFNVRVIDKTYKGLLWKITTKLVDDTIVDLESVNDI 540 YVVGK+YKILIRPEDFD+VP+NKGFFNVRVIDK YKGLLWKITT+L D+TIVDLESVN++ Sbjct 480 YVVGKQYKILIRPEDFDLVPENKGFFNVRVIDKNYKGLLWKITTQLKDNTIVDLESVNEV 539 Query 541 EVDKTFGVTFDPIDVHLMEV 560 +V+KTFGV FDPIDVHLMEV Sbjct 540 DVNKTFGVLFDPIDVHLMEV 559 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 183 bits (464), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 178/608 (29%), Positives = 296/608 (49%), Gaps = 82/608 (13%) Query 2 NERFLIEIEGLNKTFDDGFVSVRDINLKIKKGEFITILGPSGCGKTTTLRLLAGFEDPTY 61 N + IE++ + F + V++ +INL ++K + +++LGPSGCGKTTTL ++AG PT Sbjct 3 NNKSAIELKNIVVDFGES-VAIDNINLSVEKHQLVSLLGPSGCGKTTTLAVIAGLIKPTS 61 Query 62 GKIKVNGLDIKDLPIHKRPFATVFQDYALFSHLTVYKNIAYGLKAMYTKLDPIDKLVEQY 121 G++ NG D+ P +R VFQ+YAL+ H+ V++NI + L Y+ + Sbjct 62 GQVLFNGYDVTKKPPQERKLGLVFQNYALYPHMNVFENIVFPL---YSD--------NSW 110 Query 122 HQSLLDKQHRLHKRIERL--EKSNANPQLLEQLKQTVVVQQKQFKQQTETFKQKENARRD 179 Q++L+K + I L + A+ Q ++QL K F E KQ + D Sbjct 111 KQAVLEKNSVANHEINCLLLTSNGASVQEIDQL-------NKLFHDSIEKPKQIQYQIND 163 Query 180 ---AIQQRLVQLTKEWE-----------SLSKQKLQQ---LEAEKKLLDKKFEQT----- 217 ++ + L +LT + +L+KQ L+Q LEAE K K +QT Sbjct 164 LNVSVFKNLNELTANLKLIPSKHQFAITNLNKQTLKQINELEAEFKTKWKLQKQTPIKSG 223 Query 218 ---ERKYQKDAWMATHSEMRLKQ--FKQEVLALKQLIKTKFKQNEPVDKLQLKLQTLKQK 272 K Q ++ + RLK+ FK +V LKQ + K + Q KL Sbjct 224 VEHNAKLQAIKQHFSYEKQRLKKHYFKTKV-ELKQTLVENLKLVKKAISEQTKLIKQSSD 282 Query 273 YAA----KRQIDKEYDKLVLAYNKKDYWTSYWETYSLQ----------QQEAFEKRYLSR 318 Y KR I E ++L Y K + + YSL+ + E + R +S Sbjct 283 YTKLKQLKRLIKVEPNQLKKQY--KVFLNQLIKNYSLKTDKLTDTQLNEIEQIKTRIVS- 339 Query 319 KLTKQEQHQKVCAVIELVGLKGNEDKLPEELSGGMKQRVALARSLVIEPDILLLDEPLSA 378 KQ ++ V + + K P+++SGG +QRVA+AR++V P +LL+DEPLS Sbjct 340 --IKQFINKTALEVANKLAITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSN 397 Query 379 LDAKVRKNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQVGSPADIYD 438 LDAK+R ++ +++ Q+ +T + VTHDQEEA+ +S+ IV M+ G + Q+G+P+++Y Sbjct 398 LDAKLRVQTRQWIRQFQQELQITTVFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYL 457 Query 439 SPKTEWIANFIG--QANIFKGTYLGD---LKIKLHSGEVIKTDVDNNYVVGKEYKILIRP 493 P E++A F+G + NI + + + L E K +V+ +VG Y+ L Sbjct 458 KPANEFVARFLGTPEMNIIECSVKNNQLFWNNHLLVTESFKLNVE-KLLVGFRYEQL--- 513 Query 494 EDFDIVPKNKGFFNVRVIDKTYKGLLWKITTKLVDDTI-VDLESVNDIEVDKTFGVTFDP 552 +V NK ++I+ G T L D T+ + LE + ++V + Sbjct 514 ----VVTTNKSSLQAKLINIENLGKHLVATISLFDTTLSMRLELNSHLKVGDSLNFIIKA 569 Query 553 IDVHLMEV 560 ++H ++ Sbjct 570 NNLHFFDI 577 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 93.6 bits (231), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 97/369 (26%), Positives = 175/369 (47%), Gaps = 47/369 (13%) Query 96 VYKNIAYGLKAMYTKLDPI-DKLV-EQYHQSLLDKQHRLHKRIERLEKSNANPQLLEQLK 153 ++ N Y L+ M + P +KL EQ +Q ++D RL+ I +N + E +K Sbjct 431 LFANSCYDLQQMPQIIKPFWEKLFNEQNYQKIIDSVSRLNVMI-----ANYITKAFE-IK 484 Query 154 QTVVVQQKQFKQQTETFKQ--KENARRDAIQQRLVQLTKEWESLSKQKLQQLEAEKKL-- 209 +T+ + ++FKQQ K+ N + +A + + +L ++L KQ Q+ KK Sbjct 485 KTIDEKLREFKQQNLALKKAYSANKKSEANKASINELKVNLKTLKKQLKQEKNTTKKQSK 544 Query 210 ---------------LDKKFEQTERKYQKDAWMATHSEMRLKQFKQEVLALKQLIKTKFK 254 L +F RK+ K RL+ +++ +K+L K Sbjct 545 KELKPLLKEHHTALKLHDEFNHDLRKWFKKLNFMVKKYNRLENSQKKFCLVKKLKALFKK 604 Query 255 QNEPV-DKLQLKLQTLKQ-KYAAKRQIDKEYDKLVLAYNKKDYWTSYWETYSLQQQEAFE 312 Q+E + +L+ KL+T + KR + KE + L + K+ + Sbjct 605 QDETLQSELRPKLKTFGVINFEYKRAV-KESNVFRLVHFAKNIF---------------- 647 Query 313 KRYLSRKLTKQEQHQKVCAVIELVGLKGNED-KLPEELSGGMKQRVALARSLVIEPDILL 371 K +L LTK KV ++ VGLK + P E SGG +QR+A+AR+L+ +P +++ Sbjct 648 KPFLFFNLTKIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLII 707 Query 372 LDEPLSALDAKVRKNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQVG 431 DE +SALD ++ + L+ + ++ LT + + HD + NR+++M+ G I++ G Sbjct 708 ADELISALDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERG 767 Query 432 SPADIYDSP 440 S +I+ +P Sbjct 768 SVDEIFSNP 776 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 80.9 bits (198), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 44/119 (37%), Positives = 73/119 (61%), Gaps = 6/119 (5%) Query 325 QHQKVCAVIELVGLKGNEDKL----PEELSGGMKQRVALARSLVIEPDILLLDEPLSALD 380 QK+ A+I+ V L+ D P LSGG KQRVA+A L + P I++ DE + LD Sbjct 114 SRQKIKAIIDEVTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLD 173 Query 381 AKVRKNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQVGSPADIYDS 439 K +K +++ + K+ +Q G I +THD EE + +++++VMNEG +++ G P +++ S Sbjct 174 PKAKKTIKQFMVKLAKQ-GKCVISITHDMEE-VTKADKVLVMNEGKLIKQGKPVEVFTS 230 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 76.6 bits (187), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 40/118 (34%), Positives = 73/118 (62%), Gaps = 2/118 (2%) Query 321 TKQEQHQKVCAVIELVGLK-GNEDKLPEELSGGMKQRVALARSLVIEPDILLLDEPLSAL 379 +K + QK +E++GLK ++ P ELSGG K+RVA+A L IEP+IL+ DEP + L Sbjct 132 SKYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGL 191 Query 380 DAKVRKNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQVGSPADIY 437 D + + + + ++ QQ F ++TH E L +++ ++V+ +G +++ SP +++ Sbjct 192 DPEGEREMMQLIKTAKQQQRTVF-MITHQMENVLEVADVVLVLAKGKLVKAASPYEVF 248 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 75.5 bits (184), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/163 (31%), Positives = 88/163 (54%), Gaps = 2/163 (1%) Query 268 TLKQKYAAKRQIDKEYDKLVLAYNKKDYWTSYWETYSLQQQEAFEKRYLSRKLTKQEQHQ 327 +L A ++K + +L Y K + Y ++ A++ +S+ L + Q + Sbjct 142 SLGSCIVANCPLEKCTSEQLLTYRKNNLGYVYQRYNLIELLSAYDNIAISQNLIPKYQRR 201 Query 328 -KVCAVIELVGLKGNEDKLPEELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVRKN 386 + + E + +K K P E+SGG KQRVA+AR+++ EP +LL DEP ALD+ +N Sbjct 202 LDIEELAEKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAEN 261 Query 387 LQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQ 429 + LQ I++ T ++VTHD + +NRI+ +++G I+ Sbjct 262 IINLLQTINKTYKQTILMVTHDVSLTRI-ANRIIKISDGKIVS 303 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 74.7 bits (182), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 70/116 (60%), Gaps = 2/116 (2%) Query 338 LKGNEDKLPEELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVRKNLQKELQKIHQQ 397 +K N + LSGG +QR+ +AR++ ++PD+LL+DEP SALD+ +++ +Q++ ++ Sbjct 216 VKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKEK 275 Query 398 SGLTFILVTHDQEEALVLSNRIVVMNEGNILQVGSPADIYDSPKTEWIANFIGQAN 453 T ++VTH + + +++ + +G +++ G+ I+ PK + ++I N Sbjct 276 --FTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQIFTKPKQKATNSYISGKN 329 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 71.2 bits (173), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 92/176 (52%), Gaps = 14/176 (8%) Query 279 IDKEYDKLVLAYNKKDYWTSYWET-YSLQQQEAFEKRYLSR-KLTKQEQHQKV------- 329 I K+ + + +K+ Y+ + + ++L +E +K Y S+ K KQ QK+ Sbjct 125 IGKQVKEAIYVASKRRYFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPINVEK 184 Query 330 --CAVIELVGLKGNEDKL---PEELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVR 384 +++ +G+ + +L P E SGGM+QR+ +A ++ EPD+++ DEP +ALD ++ Sbjct 185 KTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQ 244 Query 385 KNLQKELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNILQVGSPADIYDSP 440 + ++++ +T I ++H+ + + VM G I++ G +I+ +P Sbjct 245 AKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNP 300 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 68.2 bits (165), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 42/125 (34%), Positives = 69/125 (55%), Gaps = 11/125 (9%) Query 6 LIEIEGLNKTFDDGFVS---VRDINLKIKKGEFITILGPSGCGKTTTLRLLAGFEDPTYG 62 +IE++ + K +G + ++ ++L IK +FI ILGPSG GKTT L +++G + + G Sbjct 232 IIELKNVYKYITNGITTNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSG 291 Query 63 KIKVNGLDIKDL------PIHKRPFATVFQDYALFSHLTVYKNIAYG--LKAMYTKLDPI 114 + VNG ++ L ++ +FQ Y L +LTV +NI G L+ +K I Sbjct 292 SVIVNGYNMICLNDRKLTKFRQKYVGYIFQQYGLLPNLTVRENIEIGANLQPDPSKRISI 351 Query 115 DKLVE 119 D L+E Sbjct 352 DALLE 356 Score = 64.7 bits (156), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 61/99 (62%), Gaps = 1/99 (1%) Query 329 VCAVIELVGLKGNEDKLPEELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVRKNLQ 388 + A++E VG+ + KLP ELSGG +QRV++AR+ P ++ DEP ALD ++ + + Sbjct 351 IDALLEAVGMDSLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVL 410 Query 389 KELQKIHQQSGLTFILVTHDQEEALVLSNRIVVMNEGNI 427 K+ I ++ T I+VTH+ A L++ ++ + +G I Sbjct 411 KQFLAIKKRYQTTMIIVTHNNLIA-NLADLVIYVADGKI 448 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 62.4 bits (150), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 30/82 (37%), Positives = 55/82 (67%), Gaps = 1/82 (1%) Query 347 EELSGGMKQRVALARSLVIEPDILLLDEPLSALDAKVRKNLQKELQKIHQQSGLTFILVT 406 +LSGG +QRVA+AR+L+ EP IL DEP A++ + K + + + ++ G T ++VT Sbjct 187 HKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIVT 246 Query 407 HDQEEALVLSNRIVVMNEGNIL 428 H+ E+ + L+ R++ +++G I+ Sbjct 247 HN-EKIVELAKRVIKIHDGKII 267 Lambda K H a alpha 0.317 0.135 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 67720065 Query= gi|13507795|ref|NP_109744.1| spermidine/putrescine transport system permease [Mycoplasma pneumoniae M129] Length=286 Score E Sequences producing significant alignments: (Bits) Value gi|12044893|ref|NP_072703.1| spermidine/putrescine ABC transporte... 421 7e-152 >gi|12044893|ref|NP_072703.1| spermidine/putrescine ABC transporter, permease protein (potB) [Mycoplasma genitalium G-37] Length=285 Score = 421 bits (1082), Expect = 7e-152, Method: Compositional matrix adjust. Identities = 221/283 (78%), Positives = 258/283 (91%), Gaps = 0/283 (0%) Query 1 MKLSKKYLLAVPFFVLMVIFFVVPMAWIIVSGLQNENGASITEKYQPLVGGYSFFQSFWT 60 M + KKY L +PFF+LM IFF++PMAWIIVSGLQ+E+GASI++KY+PLV G FF SFWT Sbjct 1 MHIKKKYWLLLPFFLLMTIFFIIPMAWIIVSGLQSEDGASISQKYEPLVSGLGFFNSFWT 60 Query 61 SLWTATVTVLVALLVAFPFCYFLSQSKNKVFRSFVIALATAPIWSSFLIKLIGLKTLLDL 120 SLW + VTV+VALL +FPFCYFLSQSKNK+F++FVI++AT PIWSSFLIKLIGLKTLLDL Sbjct 61 SLWISIVTVIVALLFSFPFCYFLSQSKNKIFKAFVISIATVPIWSSFLIKLIGLKTLLDL 120 Query 121 VLGLALNRVGDNNLTFGSGYTLIGMIYLFTPFMFLPLYNNFCILPKNLILASQDLGYNWI 180 ++GL+LNRVGDNNLTFGSGYTL+G IYLFTPFMFLPLYN+FC+LPKNL+LASQDLGYNWI Sbjct 121 LIGLSLNRVGDNNLTFGSGYTLLGTIYLFTPFMFLPLYNHFCVLPKNLLLASQDLGYNWI 180 Query 181 TSFIKVVIPFSKTAILSGIALTFFPSLTSVAIAQFLDNSNQNNTLGNYVFTLGNNGYDSA 240 SF+KVVIPFSKTA+LSGIALTFFP+LTSVAIAQFLDNSNQ TLGNY+FTLGNNGYDSA Sbjct 181 YSFVKVVIPFSKTAMLSGIALTFFPALTSVAIAQFLDNSNQAETLGNYIFTLGNNGYDSA 240 Query 241 IERGRASGAIIIAALITFAFYFVVIFAPRIVRLIQTKCLKYRR 283 IERGRA+GAIIIAALITFA YF V+F P+IVR++ K ++ + Sbjct 241 IERGRAAGAIIIAALITFAIYFTVVFLPKIVRIVHNKWKQHEK 283 Lambda K H a alpha 0.330 0.143 0.434 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30929661 Query= gi|13507796|ref|NP_109745.1| spermidine/putrescine transport system permease [Mycoplasma pneumoniae M129] Length=286 Score E Sequences producing significant alignments: (Bits) Value gi|12044894|ref|NP_072704.1| spermidine/putrescine ABC transporte... 461 6e-168 >gi|12044894|ref|NP_072704.1| spermidine/putrescine ABC transporter, permease protein (potC) [Mycoplasma genitalium G-37] Length=284 Score = 461 bits (1187), Expect = 6e-168, Method: Compositional matrix adjust. Identities = 223/282 (79%), Positives = 259/282 (92%), Gaps = 0/282 (0%) Query 5 KSCKLWLRGSFFVIVLVLIYLPLIIVVLVSFNGSSTRGNIVLDFGNVLNPNPDAKSAYLR 64 K K ++ S+F +++ LIYLPL+IVVLVS NGSS+RGNIVLDFGNVLNPNPD+KSAYLR Sbjct 3 KHFKNLIKNSYFFLLITLIYLPLLIVVLVSLNGSSSRGNIVLDFGNVLNPNPDSKSAYLR 62 Query 65 LGEADFAIPLLNSVIIGLITVIVSIPIAIMTAFALLRSRQWLNKTVFGIANFSLATPDII 124 LGE DFA PL+NS+IIG+ITV+VS+PIA+++AFALLR+R L KT+FGI NFSLATPDII Sbjct 63 LGETDFATPLINSIIIGVITVLVSVPIAVISAFALLRTRNALKKTIFGITNFSLATPDII 122 Query 125 TGISLVLLFANTWLSFNQQLGFFTIISSHISFSVPYALVLIYPKMQKLNRNLILASQDLG 184 T ISLVLLFANTWLSFNQQLGFFTII+SHISFSVPYAL+LIYPK+QKLN NLILASQDLG Sbjct 123 TAISLVLLFANTWLSFNQQLGFFTIITSHISFSVPYALILIYPKIQKLNPNLILASQDLG 182 Query 185 YSPIATFFHITLPYLLPSILSAILVVFATSFDDYVITSLVQGSVKTVASELYSFRKGIKA 244 YSP+ TFFHITLPYL+PSI SA+LVVFATSFDDYVITSLVQGSVKT+A+ELYSFRKGIKA Sbjct 183 YSPLKTFFHITLPYLMPSIFSAVLVVFATSFDDYVITSLVQGSVKTIATELYSFRKGIKA 242 Query 245 WAIAFGTILILVSILAVLLVTLHKYLRFKHKEMLRVKQWKNS 286 WAIAFG+ILIL+S+L V L+TL KYLR K KE+++++QWKNS Sbjct 243 WAIAFGSILILISVLGVCLITLQKYLREKRKEIIKIRQWKNS 284 Lambda K H a alpha 0.329 0.142 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30929661 Query= gi|13507797|ref|NP_109746.1| hypothetical protein MPN058 [Mycoplasma pneumoniae M129] Length=485 Score E Sequences producing significant alignments: (Bits) Value gi|12044895|ref|NP_072705.1| lipoprotein, putative [Mycoplasma ge... 606 0.0 >gi|12044895|ref|NP_072705.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=483 Score = 606 bits (1562), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/496 (62%), Positives = 384/496 (77%), Gaps = 24/496 (5%) Query 1 MKKQLKYWFSLMGLTMSVGLTACSSNQFVFANFESYVSPLLLERAEAKQPMTFLTYPTNE 60 MKKQLKY F + +++S L++C S FV ANFESY+SPLLLER + K P+TFLTYP+NE Sbjct 1 MKKQLKYCFFSLFVSLSSILSSCGSTTFVLANFESYISPLLLERVQEKHPLTFLTYPSNE 60 Query 61 KLINGFANNTYTVAVASSYAVSELQQQGHLLPIDWAKFNLKKTQNGSNQATIQNKEDAKE 120 KLINGFANNTY+VAVAS+YAVSEL ++ L PIDW++FNLKK+ + S++ + N DAK+ Sbjct 61 KLINGFANNTYSVAVASTYAVSELIERDLLSPIDWSQFNLKKSSSSSDK--VNNASDAKD 118 Query 121 LFTKEIGDIS--------GELLNWGVPYFLQDLVFVYRGEKIQELEGQDVTWSTIIKAIV 172 LF I +IS ELL+W VPYFLQ+LVFVYRGEKI ELE ++V+W+ +IKAIV Sbjct 119 LFIDSIKEISQQTKDSKNNELLHWAVPYFLQNLVFVYRGEKISELEQENVSWTDVIKAIV 178 Query 173 NHKDRFNNNRLALIDDARTIFSLANVVHHEVKNTTVDVNPTGSTLNYFGNVYESFANLGL 232 HKDRFN+NRL IDDARTIFSLAN+V+ N + DVNP + YF NVYESF LGL Sbjct 179 KHKDRFNDNRLVFIDDARTIFSLANIVN--TNNNSADVNPKEDGIGYFTNVYESFQRLGL 236 Query 233 KRDNLNTLFVNSDSNIIINELANGRRQGGIVYNGDAVYAALGGDLRDEINENNLPNGDNF 292 + NL+++FVNSDSNI+INELA+GRRQGGIVYNGDAVYAALGGDLRDE++E +P+G+NF Sbjct 237 TKSNLDSIFVNSDSNIVINELASGRRQGGIVYNGDAVYAALGGDLRDELSEEQIPDGNNF 296 Query 293 HIVQPKHSPVALDFLIINQQQTHFRDAAHQLIYQLALEGADQTAEELLKTDEEKGTSDED 352 HIVQPK SPVALD L+IN+QQ++F+ AH++I+ LAL+GADQT E+L+KTDEE GT DED Sbjct 297 HIVQPKISPVALDLLVINKQQSNFQKEAHEIIFDLALDGADQTKEQLIKTDEELGTDDED 356 Query 353 YYTYGAMQNFSYVNYVSPLKNISDETTGIVFKENKQADTKQVVKQQSQSEQQSESAEKEE 412 +Y GAMQNFSYVNYVSPLK ISD +TGIV + A+ K KQ S + SE Sbjct 357 FYLKGAMQNFSYVNYVSPLKVISDPSTGIVSSKKNNAEMKS--KQMSTDQMTSE------ 408 Query 413 TEQDDFYTATLKSLL-KADS--LDDKAKKLVDTIKKTYKIKKADNINWANLIEKPITPLQ 469 ++ D+YT TLK+LL K DS L++ KKLV+TIKK Y I+K +I W L+EKPI+PLQ Sbjct 409 -KEFDYYTETLKALLEKEDSAELNENEKKLVETIKKAYTIEKDSSIRWNQLVEKPISPLQ 467 Query 470 RSNLTLSWLDFKQRFW 485 RSNL+LSWLDFK +W Sbjct 468 RSNLSLSWLDFKLHWW 483 Lambda K H a alpha 0.314 0.131 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 57586443 Query= gi|13507798|ref|NP_109747.1| o-sialoglycoprotein endopeptidase [Mycoplasma pneumoniae M129] Length=319 Score E Sequences producing significant alignments: (Bits) Value gi|12044896|ref|NP_072706.1| O-sialoglycoprotein endopeptidase [M... 495 2e-180 >gi|12044896|ref|NP_072706.1| O-sialoglycoprotein endopeptidase [Mycoplasma genitalium G-37] Length=315 Score = 495 bits (1275), Expect = 2e-180, Method: Compositional matrix adjust. Identities = 230/319 (72%), Positives = 271/319 (85%), Gaps = 4/319 (1%) Query 1 MEQPLCILGIETTCDDTSIGVITESKVQAHIVLSSAKLHAQTGGVVPEVAARSHEQNLLK 60 MEQPLC+LGIETTCDDT + ++ + K++++IV+SSA LH +TGGVVPE+AAR HEQNL K Sbjct 1 MEQPLCVLGIETTCDDTGLSIVIDQKIKSNIVISSANLHVKTGGVVPEIAARCHEQNLFK 60 Query 61 ALQQSGVVLEQITHIAYAANPGLPGCLHVGATFARSLSFLLDKPLLPINHLYAHIFSALI 120 A++ + ++HIAYA NPGL GCLHVGATFARSLSFLLDKPLLPINHLYAHIFS LI Sbjct 61 AIRDLNFEIRDLSHIAYACNPGLAGCLHVGATFARSLSFLLDKPLLPINHLYAHIFSCLI 120 Query 121 DQDINQLKLPALGLVVSGGHTAIYLIKSLFDLELIAETSDDAIGEVYDKVGRAMGFPYPA 180 DQD+N+L+LPALGLV+SGGHTAIYL+KS ++LELIAETSDDAIGEVYDK+GRAMGF YPA Sbjct 121 DQDLNKLQLPALGLVISGGHTAIYLVKSFYELELIAETSDDAIGEVYDKIGRAMGFDYPA 180 Query 181 GPQLDSLFQPELVKSHYFFRPSTKWTKFSYSGLKSQCFTKIKQLRERKGFNPQTHDWNEF 240 G ++DSLF ELVK HYFF+PSTKWTKFSYSGLKSQC KIKQ+ N DW+E Sbjct 181 GSKIDSLFNKELVKPHYFFKPSTKWTKFSYSGLKSQCLNKIKQISA----NKTRIDWSEL 236 Query 241 ASNFQATIIDHYINHVKDAIQQHQPQMLLLGGGVSANKYLREQVTQLQLPYLIAPLKYTS 300 ASNFQATIIDHYI+HVK+AI++ P+MLL+GGGVSAN YL +++ L LP+LIA KYTS Sbjct 237 ASNFQATIIDHYIDHVKNAIKKFAPKMLLVGGGVSANSYLSNRISTLNLPFLIADSKYTS 296 Query 301 DNGAMIGFYANLLINGKNN 319 DNGAMIGFYA+LLING N Sbjct 297 DNGAMIGFYASLLINGDKN 315 Lambda K H a alpha 0.320 0.136 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35370201 Query= gi|13507799|ref|NP_109748.1| S-adenosylmethionine synthetase 2 [Mycoplasma pneumoniae M129] Length=383 Score E Sequences producing significant alignments: (Bits) Value gi|12044897|ref|NP_072707.1| S-adenosylmethionine synthetase (met... 585 0.0 >gi|12044897|ref|NP_072707.1| S-adenosylmethionine synthetase (metX) [Mycoplasma genitalium G-37] Length=383 Score = 585 bits (1507), Expect = 0.0, Method: Compositional matrix adjust. Identities = 274/383 (72%), Positives = 323/383 (84%), Gaps = 0/383 (0%) Query 1 MAKTIKHPRWGRYVAEAVGRGHPDKICDQIADSILDECIKQSPTSHVACEVFASKNLIMV 60 MA IK R GR+V+E+VG GHPDKICDQIADSILD+C+ QS TSHVACEVFASKNLI++ Sbjct 1 MAIRIKSTRVGRFVSESVGLGHPDKICDQIADSILDQCLLQSKTSHVACEVFASKNLILI 60 Query 61 GGEILTTGYVDVVQTGWKVLNRLGYTENDFSFLSCINSQSSEINQAVQSNDEIGAGDQGI 120 GGEI T+GYVDVVQT W++L LGY E DFSFLSCIN+QS EINQAV N+EI AGDQGI Sbjct 61 GGEISTSGYVDVVQTAWRILRNLGYNETDFSFLSCINNQSLEINQAVLKNNEINAGDQGI 120 Query 121 TVGYACSETEQLMPLGSIVAQALVQRAARIIDQYPFIKHDMKSQVVLNYTGNKVQCESVL 180 TVGYA +ET+QLMPLG ++A + +++A ++ Q+ F+K+DMKSQVVLNY+ N+V+CE VL Sbjct 121 TVGYAVNETKQLMPLGVLLAHSFLKQAEKLTKQFDFLKNDMKSQVVLNYSLNQVECEEVL 180 Query 181 MSVQHTQDVSLDQLRQTIINQVILPVLTEYGLNDPKIKHLVNPGGSFVVGGPMADTGLTG 240 +S+QHT +SL +LR+ I N VILPVL +YG D K LVNPGGSFV+GGPMADTGLTG Sbjct 181 LSIQHTNAISLTELRKVIENNVILPVLNQYGFQDKKPTCLVNPGGSFVLGGPMADTGLTG 240 Query 241 RKIIVDTYGPYANHGGGSFSGKDPTKVDRTGAYFARFIAKHIVSLGWAEECEVSISWVFS 300 RKIIVDTYGPYA+HGGGSFSGKDP+KVDRTGAYFARFIAKHIVSLGWA ECEVSISWVFS Sbjct 241 RKIIVDTYGPYAHHGGGSFSGKDPSKVDRTGAYFARFIAKHIVSLGWASECEVSISWVFS 300 Query 301 QPLPQSIQVKCFNINKEFSEQLINQVISQYFNWSVAKIIAKLKLLDQVEYFRYAVYGHFG 360 +P PQSI VKCFN N ++ E LIN+V++ YFNWS+ KII KLKLLD V+Y YAVYGHFG Sbjct 301 KPNPQSITVKCFNTNIQYDEVLINRVVNNYFNWSITKIIDKLKLLDFVKYSDYAVYGHFG 360 Query 361 HQTAPWEQLSERDSLQCLIKNFQ 383 + +PWEQ +E D L+CLIKNF Sbjct 361 NDLSPWEQPTELDKLECLIKNFH 383 Lambda K H a alpha 0.319 0.135 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 43876191 Query= gi|13507800|ref|NP_109749.1| signal recognition particle protein [Mycoplasma pneumoniae M129] Length=450 Score E Sequences producing significant alignments: (Bits) Value gi|12044898|ref|NP_072708.1| signal recognition particle protein ... 737 0.0 gi|12045153|ref|NP_072964.1| cell division protein (ftsY) [Mycopl... 106 2e-27 >gi|12044898|ref|NP_072708.1| signal recognition particle protein (ffh) [Mycoplasma genitalium G-37] Length=446 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/443 (79%), Positives = 404/443 (91%), Gaps = 0/443 (0%) Query 1 MFKSMISSIVMRSMQKKINAQTISETDVQAVLKEIRIALLDADVNLLVVKNFIKAIREQT 60 MFK+M+SSIVMR+MQKKINAQTI+E DV+ VLKEIRIALLDADVNLLVVKNFIKAIR++T Sbjct 1 MFKAMLSSIVMRTMQKKINAQTITEKDVELVLKEIRIALLDADVNLLVVKNFIKAIRDKT 60 Query 61 VGQTVEPGQDLQKWLLKVIKQELINILSQPNQEITSKRPLKVMVVGLQGSGKTTTCGKLA 120 VGQT+EPGQDLQK LLK IK ELINILSQPNQE+ KRPLK+M+VGLQGSGKTTTCGKLA Sbjct 61 VGQTIEPGQDLQKSLLKTIKTELINILSQPNQELNEKRPLKIMMVGLQGSGKTTTCGKLA 120 Query 121 VWLKKQFQQKAMLVALDIYRPAAIDQLATLAEQTESVFFAKGTQAPDQTTKEAVKTFKES 180 WL+K+++QK MLV LDIYRPAAI+QL TL++QT SVFFA+GTQ +TTK A+ FK + Sbjct 121 YWLEKKYKQKTMLVGLDIYRPAAIEQLETLSQQTNSVFFAQGTQPVAKTTKAALSAFKTA 180 Query 181 GCQAIICDTAGRLQTNQELMDELVAIKNELHPDEILMVVDGLSGQEIINVAKEFHNRLKL 240 CQ IICDTAGRLQTN+ LMDELV++KNEL+PDEI+MVVDGLSGQEIINVA+ FH RLKL Sbjct 181 KCQTIICDTAGRLQTNETLMDELVSVKNELNPDEIIMVVDGLSGQEIINVAQTFHKRLKL 240 Query 241 TGFIITKLDSDARAGAALSLTSLLEVPIKLMGTSEKLTGLEQFHPERIASRILGLGDVMT 300 TGFII+KLDSDARAGAALSL SLL+VPIKL+G SEKL GLEQFHPERIA+RILGLGDVM+ Sbjct 241 TGFIISKLDSDARAGAALSLASLLQVPIKLIGVSEKLDGLEQFHPERIANRILGLGDVMS 300 Query 301 LVEKAEEVFDKQSLTKTVSKMFLGKMDLEDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDD 360 LVEKAE+VFDK+ LTKT+SKMFLGKMDLEDLL+YM+QM++MGSVSS++KMLP N +VS++ Sbjct 301 LVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEE 360 Query 361 HVESIEAKVKLWKVLINSMTREERRHPKLINRDPSRKQRIIKGSGRKMDELNKLMKEWSK 420 + E IE K++LWKVLINSMTREERRHPKLINRDP+RKQRIIKGSGRKMDELNKLMKEW+K Sbjct 361 NAELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNK 420 Query 421 LQTKTAEMGRMLKGGKNPFSGFG 443 +Q K EMG++LK G NPF GFG Sbjct 421 MQLKATEMGKLLKTGSNPFGGFG 443 >gi|12045153|ref|NP_072964.1| cell division protein (ftsY) [Mycoplasma genitalium G-37] Length=346 Score = 106 bits (265), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/204 (35%), Positives = 104/204 (51%), Gaps = 32/204 (16%) Query 103 MVVGLQGSGKTTTCGKLAVWLKKQFQQKAMLVALDIYRPAAIDQLATLA----------- 151 + VG+ G GKTTT K+A + KQ ++ +LVA D +R AI+QL A Sbjct 140 LFVGVNGVGKTTTLAKIADFFIKQ-NKRVLLVAGDTFRAGAIEQLNQWAKLLNCDIVLPN 198 Query 152 --EQTESVFFAKGTQAPDQTTKEAVKTFKESGCQAIICDTAGRLQTNQELMDELVAIKNE 209 EQT +V F VK + ++CDT+GRLQ LM+EL I Sbjct 199 PKEQTPAVIF------------RGVKKGIDDKYDFVLCDTSGRLQNKLNLMNELQKIYQI 246 Query 210 LH------PDEILMVVDGLSGQEIINVAKEFHNRLKLTGFIITKLDSDARAGAALSLTSL 263 + P E L+V+DG GQ ++ AK F+ KLTG ++TK+D A+ G L++ + Sbjct 247 IQKVSGSEPSETLLVLDGTVGQTGLSQAKVFNEFSKLTGIVLTKMDGSAKGGIILAIKDM 306 Query 264 LEVPIKLMGTSEKLTGLEQFHPER 287 +P+KL+G EK + L F E+ Sbjct 307 FNLPVKLIGFGEKTSDLAIFDLEK 330 Lambda K H a alpha 0.317 0.133 0.363 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 53005069 Query= gi|13507801|ref|NP_109750.1| purine-nucleoside phosphorylase [Mycoplasma pneumoniae M129] Length=238 Score E Sequences producing significant alignments: (Bits) Value gi|12044899|ref|NP_072709.1| purine-nucleoside phosphorylase (deo... 370 4e-132 >gi|12044899|ref|NP_072709.1| purine-nucleoside phosphorylase (deoD) [Mycoplasma genitalium G-37] Length=320 Score = 370 bits (950), Expect = 4e-132, Method: Compositional matrix adjust. Identities = 180/238 (76%), Positives = 211/238 (89%), Gaps = 0/238 (0%) Query 1 MTPHINAKKDDIAKVVLMPGDPLRAKWIAEQFMEKPRLVNEVRGMLAFTGQYKGKTITIM 60 MTPHI+AKKDDI+KVVLMPGDPLRAKWIAEQF+++ +LVNEVRGM A+TGQYK KT+T+M Sbjct 83 MTPHISAKKDDISKVVLMPGDPLRAKWIAEQFLDQAKLVNEVRGMFAYTGQYKSKTVTVM 142 Query 61 GHGMGIPSIGIYSYELMKFYEVNTIIRIGSCGALQGSLNLQDLIIAAKAWSESIYANDMG 120 GHGMGIPSIGIYSYELM FYEV TIIRIGSCGAL L L+DL+IA+KAWSESIYA DMG Sbjct 143 GHGMGIPSIGIYSYELMNFYEVETIIRIGSCGALAPQLKLKDLVIASKAWSESIYAKDMG 202 Query 121 VEVPADKILMASPQLVELAKKTANQLQLAFHEGLVFCEDAFHQIRKDVLKLAQEKHALAV 180 VE+P DKIL A+ LVELAK+TA + +L FHEGLVFCEDAF+Q RKDV+ LA+EK++LAV Sbjct 203 VEIPEDKILFATSSLVELAKETAIKNKLDFHEGLVFCEDAFYQTRKDVISLAKEKNSLAV 262 Query 181 EMEAHALYANAMLLNKQALTMLTVSDSLVTHAALPAEQRQATFKNMAILSLEMASQLV 238 EMEAHALYANA+LL K+ALT+LTVSDSLVTH AL +E RQ +FK MA+L+LEM +L+ Sbjct 263 EMEAHALYANAILLKKKALTLLTVSDSLVTHEALSSELRQKSFKQMALLALEMTQKLI 320 Lambda K H a alpha 0.320 0.133 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24312890 Query= gi|13507802|ref|NP_109751.1| deoxyribose-phosphate aldolase [Mycoplasma pneumoniae M129] Length=224 Score E Sequences producing significant alignments: (Bits) Value gi|12044900|ref|NP_072710.1| deoxyribose-phosphate aldolase [Myco... 390 1e-141 >gi|12044900|ref|NP_072710.1| deoxyribose-phosphate aldolase [Mycoplasma genitalium G-37] Length=223 Score = 390 bits (1001), Expect = 1e-141, Method: Compositional matrix adjust. Identities = 185/223 (83%), Positives = 201/223 (90%), Gaps = 0/223 (0%) Query 1 MKLEYNRIIDSTLLKADTLPHEIDALCADAHKYQFYAVCVNPSYVRYAKNILKGTGVKLC 60 MKLEYNRIIDSTL+KADTLPHEID LCADAHKYQF+AVCVNPSYV YAKNILK T V+LC Sbjct 1 MKLEYNRIIDSTLVKADTLPHEIDTLCADAHKYQFFAVCVNPSYVSYAKNILKNTAVQLC 60 Query 61 TVVGFPLGQTTQRQKVYETKIAIKEGADEIDMVMNIAEFKKRCACVISEIRAVKKVCGKR 120 VVGFPLGQTTQ+QKVYE KIAIKEGADEIDMVMNIAEFKKRCACVI+EIRAVKKVCGKR Sbjct 61 CVVGFPLGQTTQKQKVYEAKIAIKEGADEIDMVMNIAEFKKRCACVITEIRAVKKVCGKR 120 Query 121 TLKVIIETALLNQDEIRDAVNVCIDGNADFVKTSTGFSMRGASLEDITIMREASGNLIKI 180 LKVIIETALL DEI+DAVNVCIDGNAD+VKTSTGFS RGASLED+ IM A+ NLIKI Sbjct 121 KLKVIIETALLTNDEIKDAVNVCIDGNADYVKTSTGFSFRGASLEDVQIMNNAAANLIKI 180 Query 181 KASGGVQTAQQFLDFFNAGVSRIGTSNAVKIMEELHKLESHEH 223 KASGG++TA+QF+D F AG SRIGTSNAV+IM+EL K+ H Sbjct 181 KASGGIKTAKQFIDLFQAGASRIGTSNAVQIMQELKKMNHEYH 223 Lambda K H a alpha 0.320 0.135 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22529657 Query= gi|13507803|ref|NP_109752.1| thymidine phosphorylase [Mycoplasma pneumoniae M129] Length=421 Score E Sequences producing significant alignments: (Bits) Value gi|12044901|ref|NP_072711.1| thymidine phosphorylase (deoA) [Myco... 588 0.0 >gi|12044901|ref|NP_072711.1| thymidine phosphorylase (deoA) [Mycoplasma genitalium G-37] Length=421 Score = 588 bits (1515), Expect = 0.0, Method: Compositional matrix adjust. Identities = 284/421 (67%), Positives = 338/421 (80%), Gaps = 0/421 (0%) Query 1 MNIVNLISKKQRGKALTETEINWFVHSVNNKSLADYQVSAFLMAVWFQGMNSKELFCLTK 60 MNI+NLI+KKQRGKAL EINWFV++V NK++ADYQ++AFLMA+WF+GMN ELF LTK Sbjct 1 MNIINLINKKQRGKALNLAEINWFVNAVLNKTIADYQITAFLMAIWFKGMNPNELFLLTK 60 Query 61 AMVKSGESLHFNHHSKLSVDKHSTGGIGDKVSIALIPILTALDYSVAKLSGRGLGYTGGT 120 AMV +GE + FNHH K+SVDKHSTGGIGDKVS+AL+PILT+L +SVAKLSGRGLGYTGGT Sbjct 61 AMVDTGEIIKFNHHGKISVDKHSTGGIGDKVSLALVPILTSLGFSVAKLSGRGLGYTGGT 120 Query 121 IDKLEAVGVKTDFTPTEAQNLLDQNDCFIIGQSEGIAPVDKVLYALRDTTATVDSLPLIA 180 IDKLEAVGVKT+ T +AQ LD+NDCFIIGQS+ IAPVDKVLY LRD T TVDSLPLIA Sbjct 121 IDKLEAVGVKTELTDQQAQACLDKNDCFIIGQSKDIAPVDKVLYGLRDITGTVDSLPLIA 180 Query 181 SSVMSKKLAINNDYIFIDLKYGKGAFCKTKTMAKELAQYMYSIAKQFKRKLYIKLSDMNQ 240 SS+MSKKLA+ N+YIFIDLKYGKGAFCKTK +A ELA+ M SIAK FKRKL +KLSDMNQ Sbjct 181 SSIMSKKLAVMNEYIFIDLKYGKGAFCKTKKIANELAKLMQSIAKSFKRKLSVKLSDMNQ 240 Query 241 VLGKTIGNALEVLEVVHFLKRNWTEVGADFIQLMEQIVTEILIETKRAPNKRAAVALYHA 300 VLGK +GN +EV E V+FLK++ +VG DFI LM+ IV IL+ETK+A K+ A+ LY Sbjct 241 VLGKAVGNVIEVNEAVNFLKQDLDQVGQDFIDLMQTIVINILLETKQAKTKQKAIELYQD 300 Query 301 TLEGEKPWQRFLKFIELQGSSWERFLDLKELFNPQYKAPVLASQSGTLSYTSPVDLAMVS 360 L +K W RFL FIE QG + E F + F P+YKA + A +SG L +T P+DLA + Sbjct 301 VLTSKKAWNRFLSFIESQGGNVELFTQKEGFFKPKYKASIKAEKSGILHFTDPIDLAKIG 360 Query 361 ISLGAGRMVKTDLIDPMAGIKLVKQANEVVKAGDTVLELYSSKPITPAHIEAAQHTIIIK 420 I+LGAGRM KTD IDPMAG+ L+K+ NE V GDTVL LYSS PI+ +I AAQ TIII Sbjct 361 INLGAGRMKKTDQIDPMAGLFLMKKDNESVAVGDTVLNLYSSSPISNEYISAAQKTIIIN 420 Query 421 Q 421 + Sbjct 421 K 421 Lambda K H a alpha 0.318 0.133 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 48927756 Query= gi|13507804|ref|NP_109753.1| cytidine deaminase [Mycoplasma pneumoniae M129] Length=133 Score E Sequences producing significant alignments: (Bits) Value gi|12044902|ref|NP_072712.1| cytidine deaminase (cdd) [Mycoplasma... 192 2e-66 >gi|12044902|ref|NP_072712.1| cytidine deaminase (cdd) [Mycoplasma genitalium G-37] Length=130 Score = 192 bits (488), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 87/129 (67%), Positives = 108/129 (84%), Gaps = 1/129 (1%) Query 1 MKVDLDWVHHKLQEVVNHAYTPFSKFKVACMLVANNQAFYGVNIENASYPVTLCAERSAI 60 MKV+L+W+ +LQ +V AYTPFS FKVACM++ANNQ F+GVNIEN+S+PVTLCAERSAI Sbjct 1 MKVNLEWIIKQLQMIVKRAYTPFSNFKVACMIIANNQTFFGVNIENSSFPVTLCAERSAI 60 Query 61 ANMVTSIGKATIDYVFVYFDTKTPTNSPCGMCRQNIFEFATDKTQLFCIEKDKSFKQFTI 120 A+MVTS G IDYVFVYF+TK +NSPCGMCRQN+ EF+ KT+LFCI+ D S+KQF+I Sbjct 61 ASMVTS-GHRKIDYVFVYFNTKNKSNSPCGMCRQNLLEFSHQKTKLFCIDNDSSYKQFSI 119 Query 121 PEILKGGFR 129 E+L GF+ Sbjct 120 DELLMNGFK 128 Lambda K H a alpha 0.323 0.135 0.415 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10360391 Query= gi|13507805|ref|NP_109754.1| two functions are possible, as both enzymes are homologous to each other: phosphomannomutase or phosphoglucomutase [Mycoplasma pneumoniae M129] Length=554 Score E Sequences producing significant alignments: (Bits) Value gi|12044903|ref|NP_072713.1| phosphomannomutase (manB) [Mycoplasm... 691 0.0 >gi|12044903|ref|NP_072713.1| phosphomannomutase (manB) [Mycoplasma genitalium G-37] Length=550 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/550 (62%), Positives = 425/550 (77%), Gaps = 7/550 (1%) Query 7 LEAQRWLSHPRVKPNLKEVITAMSAEEIEHFFSLKKPSFGTAGVRGKMAPGYHGMNVFSY 66 LE +RWL+HP V LK+ I ++ EI+ FSL+KP FGTAGVR KMAPGYHGMNVFSY Sbjct 6 LEVERWLNHPNVNWELKQQIKELNESEIQELFSLEKPLFGTAGVRNKMAPGYHGMNVFSY 65 Query 67 AYLTQGYVNYIQSLNPTKKPLRFLVARDTRKHGALFNGIVCDVITSMGHVVYMFDNNEPT 126 AYLTQGYV YI+S+N K+ LRFLVARDTRK+G LF VCDVITSMGH+ Y+FD+N+P Sbjct 66 AYLTQGYVKYIESINEPKRQLRFLVARDTRKNGGLFLETVCDVITSMGHLAYVFDDNQPV 125 Query 127 PTPLVSYVIKKYHFDGGVNVTASHNPKTDNGFKIYDGHGAQLLDFQTDQLIAMLPPVVTM 186 TPLVS+VI KY F GG+N+TASHNPK DNGFK+YD GAQLLD QT+QL++ LP V +M Sbjct 126 STPLVSHVIFKYGFSGGINITASHNPKDDNGFKVYDHTGAQLLDTQTNQLLSDLPCVTSM 185 Query 187 LDFEPRGNNELLHFLDNEVVYKNYFDDLKESLVVDNDSFKNLPVVFTGLHGTSVKLLPRF 246 LD E + N + +H LDNE VYKNYF +LK+ LV++N++FK++ VVF+GL+GTSV L+ RF Sbjct 186 LDLELQPNPKFVHTLDNEKVYKNYFRELKKVLVINNNNFKDIKVVFSGLNGTSVCLMQRF 245 Query 247 LTYLGYSNIISVQPQNVFDANFANADHLNPESKDTWELARQYASNTKAKLMMAIDPDADR 306 L YLGYSNIISV+ QN FD NF NA +LNPE KDTW LA++YA AKL++ DPDADR Sbjct 246 LKYLGYSNIISVEEQNWFDENFENAPNLNPEYKDTWILAQKYAKKNNAKLIIMADPDADR 305 Query 307 FAIAEWNPQTQDWHYFSGNESGVMVAYYKLKHKQFKRQPYIVTTVVSTDLVDKIAKKYGA 366 FAIAE N WHYFSGNE+G + AYYKL HK FK PYIV+T VST LV+KIAK+YGA Sbjct 306 FAIAELN--NNQWHYFSGNETGAITAYYKLNHKVFK-SPYIVSTFVSTYLVNKIAKRYGA 362 Query 367 FVKRTNVGFKFIGQAVNHFSKDNELVVAFEEAIGMMASDGLNREKDSFQAAAIMLEIARY 426 FV RTNVGFK+IGQA+N S+ NELVV FEEAIG++ SD LNREKD++QAAA++LEIAR+ Sbjct 363 FVHRTNVGFKYIGQAINELSQTNELVVGFEEAIGLITSDKLNREKDAYQAAALLLEIARH 422 Query 427 CHNKGISLLEFYRGEIFGEFGDYYNWTVPHTIH--GVNWKEKMEQVLHQLTTATIKEVVG 484 C + I+LL+FY+ I EFG+Y+N T+ H +WKE+++ + +QL A + EV G Sbjct 423 CKEQNITLLDFYK-RILSEFGEYFNLTISHPFKATATDWKEEIKALFNQLINANLTEVAG 481 Query 485 HKITKIKNYVDINLVEYVLENGNWIKFRISGTEPKLKLYFNLSNGYLAALKHEAKKMHEF 544 K+ K+ N++E+ ENG W+KFR SGTEPKLK YF+L+NG AL+ +AKK+++F Sbjct 482 FKVVKVHLDKQTNILEFGFENG-WVKFRFSGTEPKLKFYFDLTNGTREALEKQAKKIYKF 540 Query 545 LVRLLNLDKA 554 V LL L+KA Sbjct 541 FVNLLKLNKA 550 Lambda K H a alpha 0.320 0.136 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 66882291 Query= gi|13507806|ref|NP_109755.1| transcription antitermination factor [Mycoplasma pneumoniae M129] Length=320 Score E Sequences producing significant alignments: (Bits) Value gi|12044904|ref|NP_072714.1| hypothetical protein MG054 [Mycoplas... 486 2e-176 >gi|12044904|ref|NP_072714.1| hypothetical protein MG054 [Mycoplasma genitalium G-37] Length=316 Score = 486 bits (1250), Expect = 2e-176, Method: Compositional matrix adjust. Identities = 234/320 (73%), Positives = 276/320 (86%), Gaps = 7/320 (2%) Query 1 MEQVELIPQWYVAPVSVKDEAVVRNLKAKVKALGFDNEILDVRVLKEREVIEEVFSLKSG 60 M+ EL P+WYVAPVS+KDEAVV+NLKAK++ALGF++EI+DV+VLKEREV EEV+SLKSG Sbjct 1 MQASELTPKWYVAPVSIKDEAVVKNLKAKIQALGFNHEIVDVKVLKEREVHEEVYSLKSG 60 Query 61 KLPRSLKNTAFTKWFVLDEDRYLKVKISEKNLLGRYIYIKMIYSEDAWRIIRNFPGITGI 120 KLPRSLKNT F KWFVLD+ RYL+VKISEKNLLGRYIYIKMIYSEDAWRI+RNFPGITGI Sbjct 61 KLPRSLKNTTFNKWFVLDDYRYLRVKISEKNLLGRYIYIKMIYSEDAWRIVRNFPGITGI 120 Query 121 VGSSGRGALPTPLDQADADNLEQMLKGISVNPKKRVLVTNTAIVEMDADKFDEKCQYILK 180 VGSSGRGALP PLD+ DA+NLEQMLKGIS+NP KR+++TNTAI+EMD+DKFDEK QYILK Sbjct 121 VGSSGRGALPIPLDEKDANNLEQMLKGISINPSKRIMLTNTAIIEMDSDKFDEKFQYILK 180 Query 181 HKQV--KPEAIAQVNESGEIIDTNQFAQALME-ANKAEQDEWNEDVAIVKSEANKVDPSV 237 KQ KP+ +E EI+D + +A + N EQDEW E I++SE K+DPSV Sbjct 181 QKQAIQKPKE----DEDSEIVDAEKLKEAFKKLQNSQEQDEWKEKATIIQSEQTKLDPSV 236 Query 238 LIPYLGKYEIVEGDTKVDQLQQFSVGNLVEVHLTGAIHIQGQIKALYQGTINKAVVEVEL 297 L+P+LGKYEI++ D KV+QL +FSVGNLVEVHLT IH+QGQIKALYQGT+NKAVVE+EL Sbjct 237 LVPFLGKYEILDTDNKVEQLFEFSVGNLVEVHLTDTIHVQGQIKALYQGTVNKAVVEIEL 296 Query 298 TTKTQLINLPLENLSFIEVE 317 T+KTQLINLPLENLSF+E E Sbjct 297 TSKTQLINLPLENLSFVEFE 316 Lambda K H a alpha 0.315 0.134 0.371 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35512250 Query= gi|13507807|ref|NP_109756.1| Preprotein translocase subunit SecE [Mycoplasma pneumoniae M129] Length=125 Score E Sequences producing significant alignments: (Bits) Value gi|12044905|ref|NP_072715.1| hypothetical protein MG055 [Mycoplas... 133 3e-43 >gi|12044905|ref|NP_072715.1| hypothetical protein MG055 [Mycoplasma genitalium G-37] Length=123 Score = 133 bits (334), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 72/120 (60%), Positives = 94/120 (78%), Gaps = 0/120 (0%) Query 4 KKLPFGLKNKEKLTAYNDEKIHELHRQLKAKIEAKKAKEKQDSKTKDTDKKVDQTPKVKV 63 KKLPF K KEKLTAY+D IHELH+QLK + EAKK+K+K+ +K K+ + + + K K+ Sbjct 3 KKLPFSFKKKEKLTAYDDASIHELHKQLKLRTEAKKSKDKERTKEKEKHESLAKEKKPKL 62 Query 64 PFTKKFSNLWFGIDKEVNKIVWVTSKKLITIFLLIVLVSAIMIGIYFGINHLFIALGVFK 123 PF K+ NLWFG+DKE+NKIVWV ++LI IFLLI+LVS +M+GI+FGIN L I LG+FK Sbjct 63 PFKKRIVNLWFGVDKEINKIVWVKGRQLIIIFLLILLVSGLMVGIFFGINQLLITLGIFK 122 Lambda K H a alpha 0.319 0.137 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9369920 Query= gi|13507808|ref|NP_109757.1| ribosomal protein L33 type2 [Mycoplasma pneumoniae M129] Length=48 Score E Sequences producing significant alignments: (Bits) Value gi|12044906|ref|NP_072716.1| ribosomal protein L33, putative [Myc... 87.8 2e-27 >gi|12044906|ref|NP_072716.1| ribosomal protein L33, putative [Mycoplasma genitalium G-37] Length=48 Score = 87.8 bits (216), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 42/48 (88%), Positives = 43/48 (90%), Gaps = 0/48 (0%) Query 1 MRKKIIFVCQDCLSRNYVMSWSKQVLNRLIINKYCKHCNQKTKHLDSF 48 MRKKIIFVCQDCLSRNYV W+KQ L RLIINKYCK CNQKTKHLDSF Sbjct 1 MRKKIIFVCQDCLSRNYVKRWTKQPLQRLIINKYCKQCNQKTKHLDSF 48 Lambda K H a alpha 0.331 0.136 0.455 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4297306 Query= gi|13507809|ref|NP_109758.1| hypothetical protein MPN070 [Mycoplasma pneumoniae M129] Length=127 Score E Sequences producing significant alignments: (Bits) Value gi|12044907|ref|NP_072717.1| hypothetical protein MG055.2 [Mycopl... 159 2e-53 >gi|12044907|ref|NP_072717.1| hypothetical protein MG055.2 [Mycoplasma genitalium G-37] Length=127 Score = 159 bits (401), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 81/127 (64%), Positives = 93/127 (73%), Gaps = 0/127 (0%) Query 1 MKVIKKLNLLNELTMLVCIFFFVCTISLIGIGIMYDLINRTSLSAPRRDPIFRNLNTVLI 60 MKV KKL+ LNE+ +L+ IFF VC ISL+GIGI++DLI + SLSA R DPIF NL VLI Sbjct 1 MKVFKKLHNLNEILLLISIFFLVCIISLVGIGIIFDLIRKASLSAIRSDPIFFNLRAVLI 60 Query 61 VLGVLEILLMVAQLVMSNMAANIINEVAENVEQKFAKALKWSRFLPFGLLQLYCYHKIKL 120 VLGV I M+ QLV+S M IN EN+E KF K L WS FLPFGLLQLYCY KIKL Sbjct 61 VLGVFAICFMIIQLVISIMIWKTINTACENIEPKFKKILHWSCFLPFGLLQLYCYQKIKL 120 Query 121 VTQTDNI 127 V Q DN+ Sbjct 121 VKQADNL 127 Lambda K H a alpha 0.331 0.143 0.413 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9662730 Query= gi|13507810|ref|NP_109759.1| hypothetical protein (yabC) homolog; similar to Swiss-Prot Accession Number P37544, from B. subtilis [Mycoplasma pneumoniae M129] Length=276 Score E Sequences producing significant alignments: (Bits) Value gi|12044908|ref|NP_072718.1| hypothetical protein MG056 [Mycoplas... 360 4e-128 >gi|12044908|ref|NP_072718.1| hypothetical protein MG056 [Mycoplasma genitalium G-37] Length=277 Score = 360 bits (923), Expect = 4e-128, Method: Compositional matrix adjust. Identities = 172/276 (62%), Positives = 212/276 (77%), Gaps = 1/276 (0%) Query 1 MPALKVIATPIGNIEEVSPRVKAALTKCEVLFCEDTRVTKKLLGLLGIDFSNKQFIINNE 60 M LKV+ATPIGNI+E+S R K AL CEVLFCED+RVT+K+L LL ID K+F+INN Sbjct 1 MKTLKVVATPIGNIQEISERAKKALQDCEVLFCEDSRVTRKMLDLLNIDCKQKKFVINNS 60 Query 61 FKEKQNLSKVANLIHQYHCGLVSDAGYPSVSDPGHILVEYVRTQLPQIAIEVINGPSALV 120 FKEKQNL+ I + C LVSDAGYPS+SDPG+ ++ ++ ++ +I IEVINGPSAL+ Sbjct 61 FKEKQNLTFAEEFITNFKCCLVSDAGYPSLSDPGNEMINWIISKNKEIRIEVINGPSALM 120 Query 121 CGLVTSGFPESPLLFLGFLDHKPTQVTQTLKHYQNFQGTIVLFEAVHRLQQTLEVIQTVF 180 CGL+TSGF +PLLFLGFL HK Q+ L YQN + TIV FEAVHRL+ TLE ++ VF Sbjct 121 CGLITSGFKTTPLLFLGFLSHKQNQLKNYLSTYQNQKSTIVFFEAVHRLENTLETVKNVF 180 Query 181 SNTEVFVGRELTKLHESHYWFNTSA-PLPDITLKGEFVIVINNHHTQPVGQYSDQLLKQE 239 N +VF+GRELTKLHESHYWFNTS LPDITLKGEFVIVI+N + S+Q L E Sbjct 181 KNNDVFIGRELTKLHESHYWFNTSENTLPDITLKGEFVIVIDNQNINHQTLSSNQYLVYE 240 Query 240 ITQLVQMGVKVKDACHYLAKRLQLKSNKLYTLFHES 275 I +L+ +GVK+KDAC+YLAK++ LKS+ LYTLFHES Sbjct 241 IKKLMDIGVKLKDACNYLAKKMHLKSSMLYTLFHES 276 Lambda K H a alpha 0.321 0.137 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29504331 Query= gi|13507811|ref|NP_109760.1| similar to nucelotidyl transferase/polynicleotide cleavage [Mycoplasma pneumoniae M129] Length=178 Score E Sequences producing significant alignments: (Bits) Value gi|12044909|ref|NP_072719.1| hypothetical protein MG057 [Mycoplas... 182 3e-61 >gi|12044909|ref|NP_072719.1| hypothetical protein MG057 [Mycoplasma genitalium G-37] Length=178 Score = 182 bits (463), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 107/178 (60%), Positives = 130/178 (73%), Gaps = 0/178 (0%) Query 1 MDKKTRLKLDGVIVCEGKTDQARLQQLFDVSVITTNGSALNQRTINLIKAVAKKQPVILF 60 MD+K R+K+DGVIVCEGKTDQA+LQQ+FDV VITTNGSAL + TINLIK +++KQ VIL Sbjct 1 MDQKARIKIDGVIVCEGKTDQAKLQQIFDVDVITTNGSALKKETINLIKKISEKQTVILL 60 Query 61 LDPDVAGQKIRRQLEQHLDKYESCFIARKDMKPNSTKIGVAEATDAALIQALQQRQVFTK 120 LDPD G+KIR +LEQHL Y +C++ N+ K G+AE +ALI AL R TK Sbjct 61 LDPDQQGKKIRSKLEQHLTNYYNCYVDMNARLKNAKKAGIAEMETSALIAALNNRVAITK 120 Query 121 TTQPTLSWEQYLELNLNSKSKRLALCNKLHLSYFNHKQLFRKLNLLQLTFDQVCQLLK 178 ++ W+QYL L LN K KRL LCN L+L YFNHKQLF+KLNLL LTF V + LK Sbjct 121 NANQSILWDQYLSLKLNDKKKRLLLCNNLNLPYFNHKQLFKKLNLLNLTFQDVWKHLK 178 Lambda K H a alpha 0.321 0.133 0.375 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 16324997 Query= gi|13507812|ref|NP_109761.1| phosphoribosylpyrophosphate synthetase [Mycoplasma pneumoniae M129] Length=388 Score E Sequences producing significant alignments: (Bits) Value gi|12044910|ref|NP_072720.1| ribose-phosphate pyrophosphokinase (... 512 0.0 >gi|12044910|ref|NP_072720.1| ribose-phosphate pyrophosphokinase (prs) [Mycoplasma genitalium G-37] Length=297 Score = 512 bits (1319), Expect = 0.0, Method: Compositional matrix adjust. Identities = 241/292 (83%), Positives = 268/292 (92%), Gaps = 0/292 (0%) Query 97 FADGETYIRFEESVRNKDVFIFQSTCAPVNDSLMELLIAIDALKRGSAKSITAILPYYGY 156 FADGETYIRF+ESVRNKD++IFQSTC VNDSLMELLIAIDALKRGSAKSITAILPYYGY Sbjct 6 FADGETYIRFDESVRNKDIYIFQSTCPNVNDSLMELLIAIDALKRGSAKSITAILPYYGY 65 Query 157 ARQDRKTMGREPITSKLVADLLTTAGVSRVALTDIHSDQTQGFFNIPVDTLRTYHVFLTR 216 ARQDRKT GREPITSKL+AD+LT AG +RV LTDIHSDQTQGFF+IPVD+LRTYH+FL R Sbjct 66 ARQDRKTKGREPITSKLIADMLTKAGANRVVLTDIHSDQTQGFFDIPVDSLRTYHIFLFR 125 Query 217 TVELLGKKDLVVVSPDYGGVKRARLIATSLELPLAIIDKRRPAHNVAESINVLGEVANKN 276 +ELLGKKDLVVVSPDYGGVKRARLIA +LELPLAIIDKRRP+HNVAESINVLGEV NKN Sbjct 126 VIELLGKKDLVVVSPDYGGVKRARLIANTLELPLAIIDKRRPSHNVAESINVLGEVKNKN 185 Query 277 CLIVDDMIDTGGTVIAAAKLLREHHAKKVCVMATHGLFNGEAPQRFQKAFNEGLVDYLFV 336 CLIVDDMIDTGGTVIAAAKLL++ AKKVCVMATHGLFN +A Q+F +AF++ L+D+LFV Sbjct 186 CLIVDDMIDTGGTVIAAAKLLQKEQAKKVCVMATHGLFNNDAEQKFMEAFDQKLIDFLFV 245 Query 337 SNSIPQTKFDQCPQFQVIDLAPLFEEVLLCYANNSSISAIYTRHIEWIKKHV 388 SNSIPQ KF QF+V+DLA L+EEV+LCYAN+ S+SAIY RHIEWIKKHV Sbjct 246 SNSIPQYKFKAVKQFEVVDLASLYEEVVLCYANSLSVSAIYERHIEWIKKHV 297 Lambda K H a alpha 0.322 0.135 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44581596 Query= gi|13507813|ref|NP_109762.1| hypothetical protein (A43259) homolog; similar to GenBank Accession Number A43259, from E. hirae [Mycoplasma pneumoniae M129] Length=147 Score E Sequences producing significant alignments: (Bits) Value gi|12044911|ref|NP_072721.1| small protein (smpB) [Mycoplasma gen... 209 2e-72 >gi|12044911|ref|NP_072721.1| small protein (smpB) [Mycoplasma genitalium G-37] Length=145 Score = 209 bits (531), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 95/144 (66%), Positives = 124/144 (86%), Gaps = 0/144 (0%) Query 1 MRVLVNNPRAQYDYYLLTGYCAGLVLKGSEVKSLALGQGSLKEAYVFIDKHEVYIKDFSI 60 M +LVNNP+A+YDY+L+ YCAG+VLKGSEVK+L+LGQGSLKEAYVF+ +E++++ F+I Sbjct 1 MLILVNNPKAKYDYHLMESYCAGIVLKGSEVKALSLGQGSLKEAYVFVKNNELFLEQFTI 60 Query 61 SPYAFSGEFNHPFKRVKKLLLNRNEIKQITARQKQEGLSIIPLKVFFKNGKIKMEIWLAK 120 PY+F+G NH R+KKLLLN++EIKQI +++Q+ LS+IP KVFF+NGKIK+EIWLAK Sbjct 61 PPYSFAGPLNHASDRIKKLLLNKHEIKQIINKKQQQSLSVIPSKVFFRNGKIKVEIWLAK 120 Query 121 PKKKFDKREAIKSKTIQRELRQQY 144 PKKKFDKRE IK KTI+REL +Y Sbjct 121 PKKKFDKRETIKKKTIRRELEAEY 144 Lambda K H a alpha 0.320 0.138 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12216708 Query= gi|13507814|ref|NP_109763.1| Glycosyl Transferase [Mycoplasma pneumoniae M129] Length=299 Score E Sequences producing significant alignments: (Bits) Value gi|12044912|ref|NP_072722.1| hypothetical protein MG060 [Mycoplas... 352 3e-124 gi|12044875|ref|NP_072685.1| hypothetical protein MG025 [Mycoplas... 142 3e-42 >gi|12044912|ref|NP_072722.1| hypothetical protein MG060 [Mycoplasma genitalium G-37] Length=297 Score = 352 bits (902), Expect = 3e-124, Method: Compositional matrix adjust. Identities = 170/293 (58%), Positives = 215/293 (73%), Gaps = 1/293 (0%) Query 1 MKISVIISTYNCGALIVKALCSLVSNQTPACELEVLVIDDGSIDNTRQIIKKFQAKVS-F 59 MK+SVII TYNC + I KA+ S+V N+ E+EVL+IDDGSIDNT ++IKK Q +++ Sbjct 1 MKLSVIIPTYNCASFIEKAINSIVKNRPNDLEIEVLIIDDGSIDNTNKVIKKIQDQINNL 60 Query 60 TLKYFYKKNGNWGSVINYVKENRLANGDWITVLDSDDTLKPNTLNKLANLVEKADYDLVV 119 TL+YFYK NGNWGSVINYV+ N+LA G+W+TVLDSDD T++ +K YD ++ Sbjct 61 TLQYFYKSNGNWGSVINYVRNNKLAKGEWVTVLDSDDIFSKKTISIFQKYAQKQRYDAII 120 Query 120 FDYTKCWKKIKLKIHTYPTWWKNMTRELQKQTPFCIPLGKFLKRNLFYKLPKLKEKVSFQ 179 FDY KCWKK KI TY + K + EL+KQTPFCIPL KF K +FY+LPKL+E V FQ Sbjct 121 FDYYKCWKKFLWKIPTYARFRKEIKGELKKQTPFCIPLAKFFKNEVFYQLPKLRENVGFQ 180 Query 180 DALYTASSLKLAKKVRHVNQSGGNYHFKRAGNSMSIPWNIKRFSAELDICKDLIRLNAQE 239 DA+YT +L++A V HV+++GG Y FKR GNSMSIPW+ RF E+ ICKDLI NAQE Sbjct 181 DAIYTMHALQIANNVFHVSKAGGYYFFKRVGNSMSIPWHSSRFDIEVQICKDLIENNAQE 240 Query 240 IALVHLLRQQFRVQLKEKQIQLAVTRDFNFSGFSWYTRCFLWMVYQTMLKRYF 292 IALVHLLR +FR + +K+I+ V RDF FSGFSWY+R L ++Y LKRYF Sbjct 241 IALVHLLRLKFRNLVDDKKIKFTVKRDFCFSGFSWYSRLILSLMYNFWLKRYF 293 >gi|12044875|ref|NP_072685.1| hypothetical protein MG025 [Mycoplasma genitalium G-37] Length=298 Score = 142 bits (358), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 93/261 (36%), Positives = 145/261 (56%), Gaps = 8/261 (3%) Query 4 SVIISTYNCGALIVKALCSLVSNQTPACELEVLVIDDGSIDNTRQIIKKFQAKVSFTLKY 63 +VII TYNC I KAL SL+ + +VL+++DGS+DNT++++ + K S + Y Sbjct 8 TVIIPTYNCCQYIKKALDSLLLQNEYFLKTQVLIVNDGSLDNTKEVVSDYLIKYS-NISY 66 Query 64 FYKKNGNWGSVINYVKENRLANGDWITVLDSDDTLKPNTLNKLANLVEKADYDLVVFDYT 123 F K NGNWGSVINYVK+N+LA G +ITVLDSDD ++ K+A +D+++ + Sbjct 67 FEKTNGNWGSVINYVKKNKLALGQYITVLDSDDYFLKDSFKKVARFF---GHDMIIGAFY 123 Query 124 KCWKKIKLKIHTYPTWWK-NMTRELQK-QTPFCIPLGKFLKRNLFYKLPKLKEKVSFQDA 181 C+ P + K + +E K +TP P+ KF LFY+L LKEK+ FQD Sbjct 124 -CYINENKTRFLKPYFGKTGVIKEHTKLRTPHSQPIAKFYSNKLFYELHDLKEKLFFQDC 182 Query 182 LYTASSLKLAKKVRHVNQSGGNYHFKRAGNSMSIPW-NIKRFSAELDICKDLIRLNAQEI 240 L ++ + V ++ + + R GNS + W N +F+A +I + + A + Sbjct 183 LMYHDAINRVESVFYLREPLAVWFSTRPGNSTTTSWENPNKFNAWCEILQKMNLYGAGIV 242 Query 241 ALVHLLRQQFRVQLKEKQIQL 261 ++ + F QLK+KQ+ L Sbjct 243 IYIYTMLPGFLKQLKKKQLIL 263 Lambda K H a alpha 0.323 0.136 0.419 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32529221 Query= gi|13507815|ref|NP_109764.1| hypothetical protein MPN076 [Mycoplasma pneumoniae M129] Length=564 Score E Sequences producing significant alignments: (Bits) Value gi|12044913|ref|NP_072723.1| hypothetical protein MG061 [Mycoplas... 604 0.0 >gi|12044913|ref|NP_072723.1| hypothetical protein MG061 [Mycoplasma genitalium G-37] Length=461 Score = 604 bits (1558), Expect = 0.0, Method: Compositional matrix adjust. Identities = 286/473 (60%), Positives = 369/473 (78%), Gaps = 12/473 (3%) Query 92 MMGLMCLCFPFLIIGDPLGGNNQLTLLRPLSKEVMGKLSSLSSQLHEGQLLGPVMAEGKT 151 MMG+MC+CFPFLIIGDPL G+NQLTLLRPLS V +LSSLSS L GQLLGPVM GKT Sbjct 1 MMGIMCVCFPFLIIGDPLNGHNQLTLLRPLSDSVKTQLSSLSSNLQVGQLLGPVMINGKT 60 Query 152 MLADGQTIDLVQGLDKNLIGTSSSIAGYALFIIFRSTIAIGGTTLVTYSQPLIASLSTQR 211 MLADG +++L++GLD N IGT++SI GYALFIIFRSTIAIGGTTLV Y+QP IA+LS+ R Sbjct 61 MLADGTSVELIKGLDGNSIGTAASITGYALFIIFRSTIAIGGTTLVVYTQPAIANLSSNR 120 Query 212 RKSVLSNANLWGFNSGIVVAFVPFLFQSVQQAGTKYWVFILTALILIGFGILCVFAWFEK 271 +KS+LSNANLWGFN GI V F PFLF+ VQQ ++YWV+I+T +IL+ F LC+F WFE Sbjct 121 KKSILSNANLWGFNIGIAVVFTPFLFEQVQQVASQYWVYIMTVMILVVFANLCLFLWFES 180 Query 272 QMDPFMPQKQTKEQMQLGNQPSAGDILKRKATWKMIGMYGICLVVLVNPLTGGWWNILQA 331 ++D PQKQTKE M L QP + DILK K TWK+IG+YGI L+++VNPLT W++ILQ Sbjct 181 KIDHIFPQKQTKENMSLTTQPKSIDILKNKTTWKLIGVYGIVLILIVNPLTPAWFSILQT 240 Query 332 VSPASSFNVKDGVKTLKPLEGAGGYFAGLPTLAILWVLGYGMGYMVFSPFNKTVYDRKRW 391 VSP+ S L G Y GL TLAI WV+GY +G++VFSPFNKT+YD+KRW Sbjct 241 VSPSGS----------NGLISTGVYTTGLATLAIFWVIGYALGFVVFSPFNKTIYDKKRW 290 Query 392 LSFMFFMNALMVIVIVLFAATLGVGTAVGFAFVAIATFIGGSFAWSMQSTILILPHEFKE 451 + F+ N +++++I++FAATLG+G+A GFA ++I +FIGG+FAWS+ S+ LILP+EFK+ Sbjct 291 MHFLLTANIVVLLIIIMFAATLGIGSAAGFALISIFSFIGGAFAWSLSSSNLILPYEFKD 350 Query 452 YKRSEVSVLFGYIWGFGYVIYTAFDITNSMFLEAPKLANPGMKGVSILPGAIAGVALFAG 511 YK++E+ +LFG+ WGFGY+ YT FDIT S+FL+AP L KG SILPG I + F G Sbjct 351 YKKNELPILFGFCWGFGYIAYTLFDITQSVFLQAPVLIQG--KGTSILPGVIVSIVFFLG 408 Query 512 LLLAAIAIVVTLPSSYLKNGDELVSEMTKKWKLNQWQFLVASKEKNRYADLLK 564 L+ A IV P+ ++K+GD+LV EMT+KWKLN+WQF++A+K+KNRY++LLK Sbjct 409 LIALANLIVKFFPACWIKDGDQLVQEMTRKWKLNEWQFVIANKQKNRYSELLK 461 Lambda K H a alpha 0.325 0.140 0.432 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 68278581 Query= gi|13507816|ref|NP_109765.1| hypothetical protein MPN077 [Mycoplasma pneumoniae M129] Length=546 Score E Sequences producing significant alignments: (Bits) Value gi|12044913|ref|NP_072723.1| hypothetical protein MG061 [Mycoplas... 567 0.0 >gi|12044913|ref|NP_072723.1| hypothetical protein MG061 [Mycoplasma genitalium G-37] Length=461 Score = 567 bits (1462), Expect = 0.0, Method: Compositional matrix adjust. Identities = 267/462 (58%), Positives = 351/462 (76%), Gaps = 7/462 (2%) Query 91 MMGLMCVCFPFLIIGSPLGGHNELTLLRPASSEVISKLTKISSSLQQGQLLGPVQVGSQT 150 MMG+MCVCFPFLIIG PL GHN+LTLLRP S V ++L+ +SS+LQ GQLLGPV + +T Sbjct 1 MMGIMCVCFPFLIIGDPLNGHNQLTLLRPLSDSVKTQLSSLSSNLQVGQLLGPVMINGKT 60 Query 151 MLADGTPVSLIKGINGNEIGTSASMTGYAFFIIFRSTIAIGGTTLIAYAQPIIASLSSNR 210 MLADGT V LIKG++GN IGT+AS+TGYA FIIFRSTIAIGGTTL+ Y QP IA+LSSNR Sbjct 61 MLADGTSVELIKGLDGNSIGTAASITGYALFIIFRSTIAIGGTTLVVYTQPAIANLSSNR 120 Query 211 KKSILSNANFWGFNVGLVIVAAPFLIPGVGRFATANWVWVVTFMILLVFAMLLVFAWFEK 270 KKSILSNAN WGFN+G+ +V PFL V + A+ WV+++T MIL+VFA L +F WFE Sbjct 121 KKSILSNANLWGFNIGIAVVFTPFLFEQVQQVASQYWVYIMTVMILVVFANLCLFLWFES 180 Query 271 KVDHMLPQKQSKTNQSLSVRPSALSILKRKTTWKLLAIAGVGTILLINPLTQTWFNSLLA 330 K+DH+ PQKQ+K N SL+ +P ++ ILK KTTWKL+ + G+ IL++NPLT WF+ L Sbjct 181 KIDHIFPQKQTKENMSLTTQPKSIDILKNKTTWKLIGVYGIVLILIVNPLTPAWFSILQT 240 Query 331 ISGA------KKAIIPTARPILLILWVMGYLLGYFLLSPFNKTIYDKKRWLHFIFTANAV 384 +S + + T L I WV+GY LG+ + SPFNKTIYDKKRW+HF+ TAN V Sbjct 241 VSPSGSNGLISTGVYTTGLATLAIFWVIGYALGFVVFSPFNKTIYDKKRWMHFLLTANIV 300 Query 385 LVLLIVIFAATLGLNTVVGFTFVGIFTFIAGGFGWSLGSSILILPYEYKEYKRNEVSIIF 444 ++L+I++FAATLG+ + GF + IF+FI G F WSL SS LILPYE+K+YK+NE+ I+F Sbjct 301 VLLIIIMFAATLGIGSAAGFALISIFSFIGGAFAWSLSSSNLILPYEFKDYKKNELPILF 360 Query 445 GYVWGFAYVFYSIFDIITSVFLDAPRIATGNTSANILPGAIAAIVLFVSLLLVINWVIIY 504 G+ WGF Y+ Y++FDI SVFL AP + G ++ ILPG I +IV F+ L+ + N ++ + Sbjct 361 GFCWGFGYIAYTLFDITQSVFLQAPVLIQGKGTS-ILPGVIVSIVFFLGLIALANLIVKF 419 Query 505 LPSSWIKNGDECVSEMTKKWRITQWQFLIANKAKNRYADLLK 546 P+ WIK+GD+ V EMT+KW++ +WQF+IANK KNRY++LLK Sbjct 420 FPACWIKDGDQLVQEMTRKWKLNEWQFVIANKQKNRYSELLK 461 Lambda K H a alpha 0.327 0.141 0.438 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 65765259 Query= gi|13507817|ref|NP_109766.1| fructose-permease IIBC component [Mycoplasma pneumoniae M129] Length=694 Score E Sequences producing significant alignments: (Bits) Value gi|12044914|ref|NP_072724.1| PTS system, fructose-specific IIABC ... 976 0.0 >gi|12044914|ref|NP_072724.1| PTS system, fructose-specific IIABC component (fruA) [Mycoplasma genitalium G-37] Length=680 Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/692 (70%), Positives = 566/692 (82%), Gaps = 12/692 (2%) Query 1 MFKPLLSAELFFNWTAKDFKDKTSFLKQACRVLQDKNCIKEEQIALTALKEREAQITTGI 60 MFK LL LFFNW+ K FK+K SFLKQA LQ + I + +A ALK+RE +ITTGI Sbjct 1 MFKNLLRPSLFFNWSQKTFKNKFSFLKQAANALQKQAVINDNNVAFEALKKREEEITTGI 60 Query 61 MSKLALPHMQSATVLKPFVAVFKVNNVDWQSLDNQPVKLIFLIGVPKDQGNLHLEFISQF 120 ++ LALPH+QS +V++PFVAVFKV N+DWQSLD +PVKLIFLIGV D+ NLHL+FIS F Sbjct 61 ITSLALPHLQSQSVIEPFVAVFKVKNLDWQSLDQKPVKLIFLIGVLVDKTNLHLDFISNF 120 Query 121 SKLMLQDEFANKVPNIRSFNGLINLIDSFQQTAVASQPVVNEAAAQTEEPKDTNTQYDFV 180 SKLML + FA+KV N+ S+NGLI LID F Q V QP V +T +YDFV Sbjct 121 SKLMLNETFASKVLNVTSYNGLIKLIDLFNQQKVQDQPAV-----------ETKKEYDFV 169 Query 181 AVTACPTGIAHTFMAKEALEKFARDHNLKVKVETQGTDGIQNQLTESDLNNTKGIILACD 240 AVTACPTGIAHTFMAKEALE FA+ HNL VKVETQGTDGIQNQLT D+NN KG+ILACD Sbjct 170 AVTACPTGIAHTFMAKEALEAFAKKHNLYVKVETQGTDGIQNQLTSDDINNAKGVILACD 229 Query 241 RLIDLTRFYGHANVVEVSTTKAIKTPQTVYDQVVKKEGKLLGNKSSDSASQTELKETTEQ 300 RLID +RFY + NV+EVSTTKAIK P VY+ + ++GK L N S+ +QT+L E+ + Sbjct 230 RLIDFSRFYANKNVIEVSTTKAIKKPDEVYELIKNQKGKQLAN-SAKPTNQTQLAESEGE 288 Query 301 LSFKDFHKRIYRAILSGVSYMLPFVVFGGILIAIAFLIDINNAGNAGKQFGSKDPIANWF 360 +F +FHKRIYRAILSGVSYMLPFVVFGGILIA++FLIDINNA NAG FG+ +P+ANW Sbjct 289 FNFNNFHKRIYRAILSGVSYMLPFVVFGGILIALSFLIDINNANNAGGNFGTINPVANWL 348 Query 361 KTLGGLSFGLIVPILSAYIAFALVGRQGLLPGFIVGLISAGKFLLNIDIVTGKIDWATES 420 LGG+SF LIVPILSAYIA+ALV RQGLLPGF+VGLIS+G+FLLNI + G I+W S Sbjct 349 NKLGGISFSLIVPILSAYIAYALVSRQGLLPGFVVGLISSGQFLLNIVLTNGTIEWLAPS 408 Query 421 KVSSGFFGAIFGGLLAAVLIIVQQRYIYRKLPQALQGIKNILFIPLLGTLVTAALFWVIN 480 +VSSGFFGAIFGGLL+A LIIVQQ YIY+KLPQ+LQGIKNILFIPL GTL TA LFWVIN Sbjct 409 QVSSGFFGAIFGGLLSACLIIVQQNYIYKKLPQSLQGIKNILFIPLFGTLFTAGLFWVIN 468 Query 481 IPLIYLNYGLSKFLQIMDKPYLAPLLGLVIGLMMCFDLGGPVNKAAYVFGVVSLESQNSG 540 IPLIYLNYGLS FL IM+ P LAPLLG VIGLMMCFDLGGP+NKAAYVFGVVSL++QN+G Sbjct 469 IPLIYLNYGLSLFLNIMNSPILAPLLGFVIGLMMCFDLGGPINKAAYVFGVVSLQNQNAG 528 Query 541 TVAMASAILSGMVPPLGIAIAATIRKQCFDKEELPAAYACYVMGLSFISEGAIPFVAKRP 600 T++MA+A+LSGMVPPL IA+AA+IRK CFDK+ELPAAYACY+MGLSFISEGAIPFV K+P Sbjct 529 TISMAAAMLSGMVPPLSIALAASIRKSCFDKQELPAAYACYLMGLSFISEGAIPFVVKKP 588 Query 601 KIMLAANLIGGAVCGVLTGAFALTIRAPHGGVFVFALLKTNLEGIAGNTLQIGAGVGLAL 660 K+ML ANLI GA+CG LTGAFAL+IRAPHGGVFVFALLKT L+GI G TLQ G G+GLAL Sbjct 589 KVMLTANLIAGAICGALTGAFALSIRAPHGGVFVFALLKTTLQGIEGATLQTGVGIGLAL 648 Query 661 LALIVSSFISAGIIIGHNLLVVRKKTKQLVNT 692 + LI+S + + IIIG++L+ + KQ +N+ Sbjct 649 VCLIISMIVGSSIIIGYDLIAKHNQRKQNLNS 680 Lambda K H a alpha 0.323 0.139 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 85553837 Query= gi|13507818|ref|NP_109767.1| 1-phosphofructokinase [Mycoplasma pneumoniae M129] Length=300 Score E Sequences producing significant alignments: (Bits) Value gi|12044915|ref|NP_072725.1| 1-phosphofructokinase (fruK) [Mycopl... 281 3e-97 >gi|12044915|ref|NP_072725.1| 1-phosphofructokinase (fruK) [Mycoplasma genitalium G-37] Length=255 Score = 281 bits (720), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 145/257 (56%), Positives = 191/257 (74%), Gaps = 2/257 (1%) Query 44 MALFGIKPTVLTFLGQPTKDLFLQLLKPYQLDLVSFPATTQTRINVKLLDGAQTTEINDV 103 M G PTV+TFLGQPTK+LFL+L+KPY L++VSF + T+TRIN+KLL +TTEIND+ Sbjct 1 MKSLGFDPTVITFLGQPTKNLFLELVKPYDLNIVSFISETKTRINLKLLKDEKTTEINDL 60 Query 104 TPLIEEQAVHEMIAYLKANVKPNDLLVLNGRFLQRDLVKLLDVAFSLTKYVVLDVDEPQL 163 +PLI + + E++ +LKANVK NDL+++NGRF L K+L++ F+LT+ VV+DVDE ++ Sbjct 61 SPLITDANLTELLTFLKANVKNNDLVIINGRFKFEALEKVLNLVFTLTENVVIDVDESKM 120 Query 164 LQLLNQRQPWLMKPNRDEFVAMVNANNSNVDQQELVQLIKQFQTTQNLLMSDGAQGAYFF 223 L LLNQ +P +MKPN DEF M+N DQQ L+ IK+F + LL+SDG +GAY F Sbjct 121 LTLLNQSKPLVMKPNIDEFQTMINTFFH--DQQSLIAAIKKFHYCKLLLLSDGDKGAYLF 178 Query 224 DQQQLLFMEAIPPQQLVSTTGAGDTLLGVFLANLLLDKDPVGSLKVAVNYASATISKLAV 283 DQ +LLF+ +I P+Q+VSTTGAGDTLL VFLANL+L D +L A NYASATISKL V Sbjct 179 DQNKLLFVSSITPKQVVSTTGAGDTLLAVFLANLILKVDLKTALIKATNYASATISKLGV 238 Query 284 VNSNDQIVLKATNYYYL 300 V+S D+I + YYL Sbjct 239 VDSKDKISVITPKSYYL 255 Lambda K H a alpha 0.320 0.136 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32671270 Query= gi|13507819|ref|NP_109768.1| Probably ABC transporter membrane protein subunit [Mycoplasma pneumoniae M129] Length=1386 Score E Sequences producing significant alignments: (Bits) Value gi|12044916|ref|NP_072726.1| hypothetical protein MG064 [Mycoplas... 1793 0.0 gi|12045327|ref|NP_073138.1| hypothetical protein MG468 [Mycoplas... 125 2e-30 >gi|12044916|ref|NP_072726.1| hypothetical protein MG064 [Mycoplasma genitalium G-37] Length=1331 Score = 1793 bits (4645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 931/1392 (67%), Positives = 1100/1392 (79%), Gaps = 67/1392 (5%) Query 1 MRNLIKNVFRSFRTAKIALIALTFLIFVAVGSFVLLNNTVNNFNASFQHVTEQGQLSNAI 60 M NLIKNV RS ++AKIALIALTFLIFVAVG FVLLNNTVNNFNA+F +VT G+LSNAI Sbjct 1 MLNLIKNVIRSLKSAKIALIALTFLIFVAVGGFVLLNNTVNNFNAAFNYVTHTGKLSNAI 60 Query 61 INERYDFGKLEFQKTSNDATSSAQPSVSTRSTLTAQKANGANSSFTLTLTPDSRTSFINN 120 INERYDFGKLEFQ+ +N++ +S+ SFTLTLT DSRTSFINN Sbjct 61 INERYDFGKLEFQEQTNNSQNSSD-------------------SFTLTLTNDSRTSFINN 101 Query 121 ALQLKPDVYNSLVTVTFSYGSESDQTKKTQIEEQSKLIAANNLSRALQTDKELLVTGQLE 180 AL+ P +Y LVT TFSY ++++ T+KT I QSK+IAANNL+ AL DK+LLV+GQLE Sbjct 102 ALRTNPSLYEGLVTQTFSYQNKTEMTEKTNIVNQSKIIAANNLNNALSKDKQLLVSGQLE 161 Query 181 QLKATFRTYKAINITDQGVFKKLIASEPTDQVNRLVLFDGHQLARSRQVEFNELFSQFTQ 240 +L A FR YKAINITD+ VFKKLI SEP D VN LV+FDG L+ S+Q +FN +QF + Sbjct 162 KLNAVFREYKAINITDKSVFKKLIVSEPNDLVNSLVIFDGQNLSSSKQSDFNNFLNQFNE 221 Query 241 VQAKGKDQLSTTLKNGNYEQLLQAIANNFGSSETELLKEIQDALKQTNSSTTLAQTQSSQ 300 +++KGKD LSTTLK G Y+ LQ + + +SET L ++Q + +SS T Sbjct 222 IKSKGKDNLSTTLKTGQYQAFLQTLFDYAQASETTLKDQLQKLISNPDSSET-------- 273 Query 301 QFSKLKNLFDSGSTFTNIAGKLTLQWMEGTNKKQLVIFDPSSYETVVAPGNWSYEQQQGK 360 +++KNLFD+ ST TNI G+LTLQW E + KQ+VIFDPSSYET+VAPGNW+Y+QQ GK Sbjct 274 --NQVKNLFDTPSTLTNIGGQLTLQWTENSLTKQIVIFDPSSYETIVAPGNWTYQQQLGK 331 Query 361 AVYQDINHWNRIKRLPFNEFEREFQKIDKRYKMLVDKIEYLILGVGITPDFVYPVFSESL 420 VY DIN+W IK+LP +FE EF KID++YK+ +D I+YL++GVGI+PDFVYPVFS SL Sbjct 332 EVYPDINNWESIKKLPLEQFESEFLKIDQKYKISIDNIDYLVIGVGISPDFVYPVFSASL 391 Query 421 LIPNTANEQLYYVNQTGYERTASSFLTNPTETGIVARLPNLNHDLDVINQWAVKNMSWPP 480 ++PN NEQLYYVNQTGYERT SSFLTNP ET IVARL NL DL+ INQWAV+NMSWP Sbjct 392 IVPNIENEQLYYVNQTGYERTFSSFLTNPVETAIVARLINLESDLNTINQWAVENMSWPT 451 Query 481 NLKAAYSNTDTTNILNLLAARTVFIPNLINTISLVSSFLTIAILLVAIFVTILILVSYLK 540 N+KAAYS++DTTNILNLLAARTVFIPNLINTI+LV+ FLTIAIL VAI V+ILIL+SYLK Sbjct 452 NIKAAYSSSDTTNILNLLAARTVFIPNLINTINLVALFLTIAILTVAIIVSILILISYLK 511 Query 541 KNTEQIGILKANGVSGRKINLSLLIFSLIPGIVGSFIGYTLGISMQNVAINLFSNYWFIP 600 KNTEQIGILKANG+SG+KINLSLLIF LIP IVG+ GY+ GI Q+VAI+LFSNYWFIP Sbjct 512 KNTEQIGILKANGLSGKKINLSLLIFGLIPAIVGAISGYSFGIGFQDVAIHLFSNYWFIP 571 Query 601 TQTSSFSVLGLLFFALLVVLMMSGISLFVGWLILRQDVVKILKHDSEFKVSHLGLWAKWL 660 T TSSFSV+GLLFF+L V+L+MS ISL VG +IL++DVVKILKHDSEFKVS LGL +K L Sbjct 572 TATSSFSVVGLLFFSLFVILIMSSISLLVGSIILKKDVVKILKHDSEFKVSRLGLSSKKL 631 Query 661 FAKFGIMTRFRVALAFNAPWKLVFLTLMSALTMMILNLSFATKDAFQVAQTKTTLTQSNH 720 FA+FGIMTRFRVALAFNAPWKLVFLTLMS+ TMMILNLSFATKD+F+ AQ+KT LT NH Sbjct 632 FARFGIMTRFRVALAFNAPWKLVFLTLMSSFTMMILNLSFATKDSFENAQSKTNLTNQNH 691 Query 721 QYEFELASPTEQSGLLKWQLFAELGATDDRTTDAVKLANRRMEIQSVDESKKWKNQQVIN 780 QYEFELAS T QSGLLKWQLFAELG TD R+ +VKLAN+RM+I +VD SK WKNQQVIN Sbjct 692 QYEFELASATTQSGLLKWQLFAELGTTDKRSESSVKLANKRMDISNVDASKDWKNQQVIN 751 Query 781 FVTDATGFSNDINYLENIVQSKIGLDYSLGFGNVSSNPWKLSETLMPANQASASNTAFQN 840 F++DA+GFSND+NYLENIVQSKIGLDYSLGF N+ SNPW+LSETLMP NQASASNTAFQN Sbjct 752 FLSDASGFSNDLNYLENIVQSKIGLDYSLGFNNIVSNPWRLSETLMPTNQASASNTAFQN 811 Query 841 FLKAIIVIDPNEGGKYIKQTKDEVTVRFLYEIDSSKALKNGNTKSVNKIQKSTAAPQAQQ 900 FLKAII I+P++G ++IKQT+D +T RF+Y IDS KALKN N Q Sbjct 812 FLKAIITINPSQGSQFIKQTQDPLTKRFIYAIDSDKALKNNN---------------EQN 856 Query 901 GQSNQLMLDNDFAKFLYKQFNLIKEGGKADPVDLNNFDFANQNQIKRFYSKYNALPPVDY 960 G N L L++DFAKFLY QF LIK+ G A DLN DF N I+ FY+KYNALPP+DY Sbjct 857 GSQNHLTLNDDFAKFLYSQFELIKKSGNASNEDLNAIDFENPQTIRDFYNKYNALPPLDY 916 Query 961 KLAFNVIGLPKETIANQKDAPLFGFLTLQAQLGNDAIKIKGIKDWKLDNTNLGPVLRTNE 1020 KL+FNVIGLPKETIA Q D P +GFLTL + N IKIKGIKDWK NLGPVL Sbjct 917 KLSFNVIGLPKETIAGQIDTPKYGFLTLHGEYQNTPIKIKGIKDWKDKVDNLGPVLSDQN 976 Query 1021 DEIINQRLFSKP--NGIIINSSAAKKYRLKEGSQLHVKIHNGYKRVNAKLVNQDPTLTAT 1078 + IINQ LF + +I+N+SAAKKY+L GS++++ ++N +KR++ K++NQDP + AT Sbjct 977 NHIINQELFKNYSFDPLIVNNSAAKKYQLAIGSEINIAVNNSFKRIDNKIINQDPLVNAT 1036 Query 1079 FNIVGINNSVHEPEFYTSYKTAATLLQYPNEWIEKQLPFNSFYANSILPFTQSTSLFSES 1138 F +VGINNS H+PEF+TSY TA +L+YPNEW K+LPFNSFYANS+L F QSTSLFSES Sbjct 1037 FRVVGINNSAHDPEFFTSYSTAFKVLEYPNEWFVKKLPFNSFYANSLLSFVQSTSLFSES 1096 Query 1139 GLFPGTSSFAANNTVLTEVIKKTIEGGKTNSKTDVQKRAAQATANGKYNSSQNN----KM 1194 G+FP TSSF+ NNTVL E+IKKTI NG+ N + +N K Sbjct 1097 GIFPATSSFSTNNTVLVELIKKTIN-----------------YKNGQMNQTSSNDSSKKE 1139 Query 1195 NYERLQKALGITSDLDSSKAGEYATILERVYDGLPYNSTISFISNVQANDALFANIANTT 1254 NY++LQKALGI++DL+ SK EY IL RVY+GLPYNSTISFISNV AN+ALF NIANTT Sbjct 1140 NYQKLQKALGISTDLEISKVNEYVAILARVYNGLPYNSTISFISNVAANNALFGNIANTT 1199 Query 1255 QQIQTAAIGIIIPIIMLIVLLVSTTLIQELKKIAIRLKALGYSNPKILLSFLSIYLPLFI 1314 +QIQ I +IIPIIMLI+LLVSTTLIQELKKIAIRLKALGYSN KIL SFLSIY+PLF Sbjct 1200 KQIQAVVIAVIIPIIMLIILLVSTTLIQELKKIAIRLKALGYSNLKILASFLSIYIPLFA 1259 Query 1315 FGLLISIPISIYLIALHNQVIFSSAAILLEATLNFPTVILSMLVLSGVLSITFVLNWLEL 1374 FGLLISIP SIYLIALHN+VIF+S++I L+A L+F + I SMLVL VLSITFVLNWLEL Sbjct 1260 FGLLISIPFSIYLIALHNEVIFASSSIFLDAFLSFESAIGSMLVLLAVLSITFVLNWLEL 1319 Query 1375 NKIKIAKEIKNS 1386 NKIKI KEIKNS Sbjct 1320 NKIKIDKEIKNS 1331 >gi|12045327|ref|NP_073138.1| hypothetical protein MG468 [Mycoplasma genitalium G-37] Length=1783 Score = 125 bits (314), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 133/549 (24%), Positives = 249/549 (45%), Gaps = 35/549 (6%) Query 330 TNKKQLVIFDPSSYETVVAPGNWSYEQQQGKAVYQDINHWNRIKRLPFNEFEREFQKIDK 389 T+++ LV+ P ++ VV+ W + + + W + P N F + Sbjct 730 TDQQNLVVQTPEAHGAVVSQ-QWLFRHNKEILPQEGEYAWKTALQTP-NNFPNWLNDLPD 787 Query 390 RYKMLVDKIEYLILGVGITPDFVYPVFSESLLIPNTANEQLYYVNQTGYERTASSFLTNP 449 RYK ++ + + ILG+G + + YPV S +PNT +E L +VN Y + Sbjct 788 RYKFSINGLTFAILGIGESVETGYPVLSLQSPLPNTQDEALIFVNDQAYRSILFAVPAAN 847 Query 450 TETGIVARLPNLNH--DLDVINQWAVKNMSW--PPNLKAAYSNTDTTNILNLLAARTVFI 505 E + +L D D + A + + P A++ D + L AR F Sbjct 848 QENYYAFKSTDLKQHTDQDPVQFIANRLEGYLDVPRSDLAFNVKDISKFNYLTTARNYF- 906 Query 506 PNLINT-ISLVSSFLTIAILLVAIFVTILILVSYLKKNTEQIGILKANGVSGRKINLSLL 564 P+L+ + +++VS+ + I ++++A+++ IL++ S++KKN + I++A G S K + + Sbjct 907 PDLVQSYLAIVSTVIAIFLIILALYLIILLIKSFIKKNQTEFSIIRAGGFSTTKFIVGMS 966 Query 565 IFSLIPGIVGSFIGYTLGISMQNVAINLFSNYWFIPTQTSSFSVLGLLFFALLVVLMMSG 624 +F+ I IV SF+G ++ + + YWFI +SF+ L + + Sbjct 967 VFAGIVAIVSSFLGVLFAFLLEGQVKGIINRYWFIALPENSFNWLSFFGSFFITFFVFEF 1026 Query 625 ISLFVGWLILRQDVVKILKHDSEFKVSHLGLWAKWLFAKFGIMTRFRVALAFNAPWKLVF 684 IS + + V ++ +E K S L K +T+FRV+L + +L Sbjct 1027 ISWIAFKQLFSKPVNVLIDQGNETKFSVLLHLLKHKSHTMSPLTKFRVSLIVSRFSRLFT 1086 Query 685 LTLMSALTMMILNLSFATKDAFQVAQTKTTLTQSNHQYEFELASPTEQSGLLKWQLFAEL 744 +S++ ++++ ++ F AQT T+L + N Y+ L +PTEQSG Q ++ Sbjct 1087 YVGLSSVALLLIGIAGTIPQKFSAAQTSTSLNR-NFNYKLNLQTPTEQSGWYAIQPYSHF 1145 Query 745 GATDDRTTDAVK-LANRRMEIQSVDESK------KWKNQQ-------------VINFVTD 784 G TD+ + +K L N ++ S +E K KN+Q + N + Sbjct 1146 GVTDNN--NGIKTLYNESVQANSQNEHPYKPSNLKLKNRQDQPIKAADGTELELGNLLLP 1203 Query 785 ATGFSNDINYLENIVQ----SKIGLDYSLGFGNVSSNPWKLSETLMPANQASASNTAFQN 840 + G + +N EN + SK +D+ + G + NPW++ E +P + + Sbjct 1204 SYGGAQQLNTDENFFRHASLSKWIIDFPIRVGGSNINPWEIVEKSIPKQITQLLSASSDQ 1263 Query 841 FLKAIIVID 849 FL +++ D Sbjct 1264 FLISVLTDD 1272 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/123 (28%), Positives = 69/123 (56%), Gaps = 0/123 (0%) Query 1252 NTTQQIQTAAIGIIIPIIMLIVLLVSTTLIQELKKIAIRLKALGYSNPKILLSFLSIYLP 1311 NT Q+ +G IIP I + +++ ++++E+K+I I LKA+GY + + L+S L+ ++P Sbjct 1652 NTVNQVDAFLLGTIIPFIFITCVVLGISMLEEMKRIFISLKAIGYRDVQNLISLLTFFIP 1711 Query 1312 LFIFGLLISIPISIYLIALHNQVIFSSAAILLEATLNFPTVILSMLVLSGVLSITFVLNW 1371 F+ LLISI + ++ V+F+ A + L F ++ +++ + + W Sbjct 1712 AFVLALLISIGVLAGVLIGIQAVVFNVAQVFLTNVFEFLPYMVGIVLFGVTIFVIGSYFW 1771 Query 1372 LEL 1374 ++L Sbjct 1772 IKL 1774 Lambda K H a alpha 0.318 0.132 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 177658264 Query= gi|13507820|ref|NP_109769.1| glutamine transport ATP-binding protein [Mycoplasma pneumoniae M129] Length=465 Score E Sequences producing significant alignments: (Bits) Value gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 627 0.0 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 203 5e-64 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 160 2e-47 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 90.1 7e-22 gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 87.8 1e-20 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 86.7 2e-20 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 84.3 5e-20 gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein... 75.9 2e-16 gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 73.2 6e-16 gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 73.6 9e-16 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 71.6 4e-15 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 68.6 4e-14 gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 64.7 1e-13 gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein... 66.2 2e-13 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 61.6 7e-12 gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein... 57.8 4e-11 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 627 bits (1616), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/466 (66%), Positives = 368/466 (79%), Gaps = 1/466 (0%) Query 1 MRYFALTDLTKPTAKFTTDAMELRQISNAYLNQAQAYLQKGLKQLKKDYKNAILYTPKTE 60 M +F+L + KP KFT++ E QI+ YL ++Q YLQKGLKQLKK+YK +I+Y P E Sbjct 1 MDFFSLNKIIKPNQKFTSNEAEFLQIATDYLEESQNYLQKGLKQLKKEYKRSIIYNPNLE 60 Query 61 YKRFLKWKQTFLQDLNQTQKRFFIVRAQHFSYVLLFNLLDEQVEAVIATFNNFLDEH-RL 119 YKRF+KWK+ F + RFFI + H+S LLF+ ++EQ+E VIA++N+FL+EH +L Sbjct 61 YKRFVKWKENFTETFESYYDRFFITKYNHYSLSLLFSFINEQIETVIASYNSFLNEHNKL 120 Query 120 EAQSKQFDLDTAVNELHDYFDQLQKNTAYSEDLPTHLTQKTEQLINARNTQLTNLLNKIA 179 F + + E F+ L+KNTA S+DLP +T QL R +L NLLNKI Sbjct 121 AFNKVSFSFEKKLFEATQQFNNLEKNTAISDDLPLQFKVRTTQLKAQRERELKNLLNKIK 180 Query 180 TTKPPLNKQQRLLASFRNYHEHLFLKNEVKKVTWLNEPRAKKESVTPDEEHIIELKNVYK 239 KQ+ LL ++ N +E LFLKNEVKKV WLN PR K+++ D+++IIELKNVYK Sbjct 181 LKNLSEKKQEILLNNWFNSNERLFLKNEVKKVNWLNSPRQKQQAAQIDDQNIIELKNVYK 240 Query 240 YITNGVTTNAVLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEM 299 YITNG+TTNAVLKG+DL +K+HDFIVILGPSGSGKTTLLNIISGMDR SSGSV+VNG M Sbjct 241 YITNGITTNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNM 300 Query 300 ICMNDRQLTNFRRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRINIDELLEAVGM 359 IC+NDR+LT FR+ YVGYIFQQYGLLPNLTVREN+E+GANLQ +P KRI+ID LLEAVGM Sbjct 301 ICLNDRKLTKFRQKYVGYIFQQYGLLPNLTVRENIEIGANLQPDPSKRISIDALLEAVGM 360 Query 360 KHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRY 419 LQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIK+RY Sbjct 361 DSLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRY 420 Query 420 KTTMVIVTHNNLIAQLADLVIYVADGKIQALQANPNPKQVEDINWI 465 +TTM+IVTHNNLIA LADLVIYVADGKI++L N NPKQVE+I+WI Sbjct 421 QTTMIIVTHNNLIANLADLVIYVADGKIKSLHRNLNPKQVEEIHWI 466 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 203 bits (517), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 113/263 (43%), Positives = 167/263 (63%), Gaps = 4/263 (2%) Query 205 KNEVKKVTWLNEPRAKKESVTPDE--EHIIELKNVYKYITNGVTTNAVLKGIDLKLKAHD 262 K K + LN+ K++S+ E ++ I K V K +TNG+ + I+LK+ + Sbjct 24 KKASKLIKKLNKKHPKRKSLNSFEAKKYDIYFKEVCKAVTNGINNQLICNHINLKILPGE 83 Query 263 FIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTNFRRNYVGYIFQQY 322 F+VILG SGSGKT+LL++IS +DRP+SG V G IC +D +LT R VGYIFQQY Sbjct 84 FVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNTICCSDAKLTALRNKNVGYIFQQY 143 Query 323 GLLPNLTVRENVEVGANLQRNPDKRINIDELLEAVGMKHLQKKLPNELSGGQQQRVSIAR 382 GLL +L V +N+++ L++ + + + +H KK+ ++LSGGQQQRV+IAR Sbjct 144 GLLRDLDVDDNIKLALPLKKRFNNNLEELLERLEL-KEHRHKKV-HKLSGGQQQRVAIAR 201 Query 383 AFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVIVTHNNLIAQLADLVIYV 442 A K P ++FGDEPTGA+++++++ +L+ F+ + TT+VIVTHN I +LA VI + Sbjct 202 ALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIVTHNEKIVELAKRVIKI 261 Query 443 ADGKIQALQANPNPKQVEDINWI 465 DGKI N NPK +E INW+ Sbjct 262 HDGKIIVDYLNQNPKTIEQINWV 284 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 160 bits (405), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 79/199 (40%), Positives = 127/199 (64%), Gaps = 0/199 (0%) Query 249 AVLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLT 308 ++L + L++ + ++ILG SGSGKTTLLN+I G D S GS +V + QL Sbjct 103 SILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLL 162 Query 309 NFRRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRINIDELLEAVGMKHLQKKLPN 368 +R+N +GY++Q+Y L+ L+ +N+ + NL +R++I+EL E + +K + K P Sbjct 163 TYRKNNLGYVYQRYNLIELLSAYDNIAISQNLIPKYQRRLDIEELAEKLDIKEILYKFPY 222 Query 369 ELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVIVTH 428 E+SGGQ+QRV+IARA K P L+ DEPTGALD + ++ I + YK T+++VTH Sbjct 223 EMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYKQTILMVTH 282 Query 429 NNLIAQLADLVIYVADGKI 447 + + ++A+ +I ++DGKI Sbjct 283 DVSLTRIANRIIKISDGKI 301 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 90.1 bits (222), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 69/211 (33%), Positives = 114/211 (54%), Gaps = 12/211 (6%) Query 247 TNAVLKGID---LKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMN 303 TN +K ID + + I+G SGSGK+TL+N +G+ +P+ G + V I Sbjct 30 TNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVK-DIYIGAK 88 Query 304 DRQLTNFR--RNYVGYIFQ--QYGLLPNLTVRENVEVG--ANLQRNPDKRINIDELLEAV 357 R++ NF+ R + +FQ +Y L + TV +++ G A Q D R LE + Sbjct 89 QRKIKNFKKLRKTISIVFQFPEYQLFKD-TVEKDIMFGPVALGQSKYDARQKAAYYLEMM 147 Query 358 GMKH-LQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIK 416 G+K+ ++ P ELSGGQ++RV+IA A P ++ DEPT LD E + +++ K Sbjct 148 GLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQLIKTAK 207 Query 417 QRYKTTMVIVTHNNLIAQLADLVIYVADGKI 447 Q+ +T +I + ++AD+V+ +A GK+ Sbjct 208 QQQRTVFMITHQMENVLEVADVVLVLAKGKL 238 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 87.8 bits (216), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/247 (30%), Positives = 116/247 (47%), Gaps = 50/247 (20%) Query 251 LKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGM-DRPSSGSVVVNGQ--EMICMNDRQL 307 ++GIDLK++ + I+G SGSGK+ + I G D + + ++N + ++ + Q Sbjct 41 VRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFNDNAQTKAKLMNFKNVDITKLKKHQW 100 Query 308 TNFRRNYVGYIFQQ--YGLLPNLT----VRENVEVGAN---LQRNPD------------- 345 +R YV YI Q + L P +T V+E + V + Q D Sbjct 101 KYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNKEIDKK 160 Query 346 -----------------KRINID----ELLEAVGMKHLQKKL---PNELSGGQQQRVSIA 381 K IN++ E+L+ +G+ +K+L P+E SGG +QR+ IA Sbjct 161 TYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIA 220 Query 382 RAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVIVTHN-NLIAQLADLVI 440 A A P LI DEPT ALD+ + VL ++ T++ ++HN +LIA D V Sbjct 221 IAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVY 280 Query 441 YVADGKI 447 + GKI Sbjct 281 VMYAGKI 287 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 86.7 bits (213), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/265 (31%), Positives = 136/265 (51%), Gaps = 34/265 (13%) Query 204 LKNEVKKVTWLNEPRAKKESVTP---DEEHIIELKNVYKYITNGVTTNAVLKGIDLKLKA 260 +KNE++ + L + + K++V DE+++ E++N + + N VL I+L +K Sbjct 52 IKNEIEILNRLIKIKNTKDNVIKKDFDEKNVFEIRN-FNFWYN--KNKQVLFDINLDIKR 108 Query 261 HDFIVILGPSGSGKTTLLNIISGMDRPS-----SGSVVVNGQEMIC--MNDRQLTNFRRN 313 + ++G SG GK+T + ++ ++ + +G + G+ + +ND L R Sbjct 109 NKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGIINDLTL----RT 164 Query 314 YVGYIFQQYGLLP-NLTVRENVEVGANLQ----RNPDKRINIDELLEAVGMKHLQKKL-- 366 VG +FQ+ L P N ++ EN+ G +N I L+ A ++ L Sbjct 165 SVGMVFQK--LTPFNFSIFENIAYGIRAHGIHNKNAINEIVRQALISAALWDEVKDNLHR 222 Query 367 -PNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVI 425 N LSGGQQQR+ IARA A P ++ DEPT ALD T + + L + + K T+VI Sbjct 223 NANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSI--ELLIQQLKEKFTIVI 280 Query 426 VTHNNLIAQ---LADLVIYVADGKI 447 VTH+ +AQ + D I+ ADG++ Sbjct 281 VTHS--MAQTIRITDETIFFADGRV 303 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 84.3 bits (207), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/190 (31%), Positives = 101/190 (53%), Gaps = 10/190 (5%) Query 262 DFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTNFRRNYVGYIFQQ 321 +++ I+G +GSGK+T+ +++G+ +P +G + + G+ + D ++ RN +G IFQ Sbjct 35 EYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTV----DFDNVSYLRNNIGIIFQN 90 Query 322 Y-GLLPNLTVRENVEVGAN---LQRNPDKRINIDELLEAVGMKHLQKKLPNELSGGQQQR 377 +TV +++ G R K I IDE+ K+ P+ LSGGQ+QR Sbjct 91 PDNQFIGITVEDDIAFGLENKCFSRQKIKAI-IDEVTLQTQTDGFIKQEPHNLSGGQKQR 149 Query 378 VSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVIVTHNNLIAQLAD 437 V+IA A NP +I DE T LD + + +KQF+ + ++ +TH+ AD Sbjct 150 VAIASVLALNPAIIIFDESTAMLDPKAKK-TIKQFMVKLAKQGKCVISITHDMEEVTKAD 208 Query 438 LVIYVADGKI 447 V+ + +GK+ Sbjct 209 KVLVMNEGKL 218 >gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=623 Score = 75.9 bits (185), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/168 (30%), Positives = 86/168 (51%), Gaps = 22/168 (13%) Query 251 LKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTNF 310 L+ + K +A+ I+GP+GSGK+ + NII G+ P+ G +++ G+++ ++ L+ Sbjct 383 LQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSEM 442 Query 311 RRNYVGYIFQQYGLLPNLTVRENVEVG----------ANLQ-----RNPDKRINIDELLE 355 +G +FQQ L T+ N+++G ++LQ +N K D +E Sbjct 443 ----IGIVFQQNILFKG-TISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTFIE 497 Query 356 AV--GMKHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALD 401 H ++L LSGGQ+QRV+IAR P ++ D+ ALD Sbjct 498 KFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDSMSALD 545 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 73.2 bits (178), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 104/204 (51%), Gaps = 8/204 (4%) Query 250 VLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSV-VVNGQEMICMNDRQLT 308 ++K ++ + VI G SGSGKTTL+ + ++PS G + N +++T Sbjct 89 IIKCCSGVIEPNKITVIFGESGSGKTTLIKQLGLFEKPSFGYINCANYCYFANQYQQKIT 148 Query 309 NFRRNYVGYIFQQYG--LLPNLTVRENVEVGANLQRNPDKRIN-IDELLEAVGMKHLQ-K 364 + +GYI Q+ + + E + NL+ K +N + L+ G++++ Sbjct 149 KNFKQKIGYILQKAEDQFFCDSILEEVLTGAVNLKLCHKKDVNYAKKYLDLCGLENIPLI 208 Query 365 KLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMV 424 K P ELS GQ++R+++A A + DEPT LD + K +A+KQ T +V Sbjct 209 KNPIELSDGQKKRLALASVLAMQVKFLILDEPTVGLDQMAISNLSKMLVAMKQT--TRIV 266 Query 425 IVTHN-NLIAQLADLVIYVADGKI 447 IV+H+ + I + AD +I++ GKI Sbjct 267 IVSHDVDFIFETADKIIHLHQGKI 290 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 73.6 bits (179), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 64/224 (29%), Positives = 118/224 (53%), Gaps = 24/224 (11%) Query 239 KYITNGVTTNAVLKGIDLKLKAHDFIV--ILGPSGSGKTTLLNIISGMDRPSSGSVVVNG 296 ++I+ + +D+ L ++ V ILG +G+GK+TL +I+ G+ +P SG + + Sbjct 9 EHISKSFDNGKIKANVDVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKIFIGE 68 Query 297 QEMICMNDRQLTNFRRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRIN------- 349 +++ N + + ++ +G + Q + L+ N TV +N+ +G + IN Sbjct 69 KQV---NFKSSKDAVKHKIGMVHQHFKLIENYTVLDNIILGNESRFGFLPLINRKVSEAK 125 Query 350 IDELLEAVGM-KHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGAL-DLEMTQI 407 I ++E G+ L++K+ N L+ GQQQRV I + ++ ++ DEPT L DLE Sbjct 126 IKTIMEKYGIFVDLKQKVSN-LTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLE---- 180 Query 408 VLKQFLAIKQRYK---TTMVIVTHN-NLIAQLADLVIYVADGKI 447 ++ FL I +K T+V+++H N I Q+AD + GK+ Sbjct 181 -IQNFLKIIANFKKLGKTIVLISHKLNEIKQVADTATVLRLGKV 223 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 71.6 bits (174), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 65/111 (59%), Gaps = 9/111 (8%) Query 227 DEEHIIELKNVYKYITNGVTTNAVLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDR 286 +E +IE++ + K +G + ++ I L +K +FI ILGPSG GKTTLL +++G + Sbjct 2 NEHSLIEIEGLNKTFDDGYVS---IRDISLNIKKGEFITILGPSGCGKTTLLRLLAGFED 58 Query 287 PSSGSVVVNGQEMICMNDRQLTNFRRNYVGYIFQQYGLLPNLTVRENVEVG 337 P+ G + VNG ++ + + +R + +FQ Y L +LTV +N+ G Sbjct 59 PTYGKIKVNGIDI-----KDMAIHKRPF-ATVFQDYALFSHLTVYKNIAYG 103 Score = 69.3 bits (168), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 7/120 (6%) Query 350 IDELLEAVGMKHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVL 409 + +++E VG+K + +LP+ELSGG +QRV++AR+ P ++ DEP ALD ++ + + Sbjct 328 VSDVIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQ 387 Query 410 KQFLAIKQRYKTTMVIVTHNNLIA-QLADLVIYVADGKIQALQANPNPKQVED---INWI 465 K+ I ++ T ++VTH+ A L+D ++ + +G I LQ NP + D WI Sbjct 388 KELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNI--LQVG-NPVDIYDSPKTEWI 444 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 68.6 bits (166), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 14/105 (13%) Query 232 IELKNVYKYITNGVTTNAVLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGS 291 IELKN+ V + I+L ++ H + +LGPSG GKTT L +I+G+ +P+SG Sbjct 8 IELKNIVVDFGESVA----IDNINLSVEKHQLVSLLGPSGCGKTTTLAVIAGLIKPTSGQ 63 Query 292 VVVNGQEMICM--NDRQLTNFRRNYVGYIFQQYGLLPNLTVRENV 334 V+ NG ++ +R+L G +FQ Y L P++ V EN+ Sbjct 64 VLFNGYDVTKKPPQERKL--------GLVFQNYALYPHMNVFENI 100 Score = 64.7 bits (156), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 36/103 (35%), Positives = 63/103 (61%), Gaps = 7/103 (7%) Query 352 ELLEAVGMKHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEM---TQIV 408 E+ + + + K P+++SGGQQQRV+IARA + P L+ DEP LD ++ T+ Sbjct 350 EVANKLAITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQW 409 Query 409 LKQFLAIKQRYKTTMVIVTHNNLIA-QLADLVIYVADGKIQAL 450 ++QF +Q + T V VTH+ A ++D+++ ++ GK+Q + Sbjct 410 IRQF---QQELQITTVFVTHDQEEAMSISDVIVCMSTGKVQQI 449 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 64.7 bits (156), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 89/190 (47%), Gaps = 14/190 (7%) Query 250 VLKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTN 309 +L+ I K+ A + + +LG SG GK++LLN ++ SG V +G ++++ Sbjct 21 LLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVYFDG----VASNKKEYK 76 Query 310 FRRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRI----------NIDELLEAVGM 359 + Y+ Q L+ V E + A + +++ I +L+ V + Sbjct 77 KLKKQCSYLDQIPNLIDTDYVYEAILRSAKQKLTWLQKLICFEPKWIKDKILAILKEVNL 136 Query 360 KHLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRY 419 + +LS GQ+QRV IA+ F K+P L+ DEPT LD ++ +R Sbjct 137 NDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDLITDFVKRE 196 Query 420 KTTMVIVTHN 429 K T+V VTH+ Sbjct 197 KITLVFVTHD 206 >gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=589 Score = 66.2 bits (160), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 107/211 (51%), Gaps = 28/211 (13%) Query 251 LKGIDLKLKAHDFIVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTNF 310 L GI+ +K D + I+GP+G+GK+T++N++ +P G + ++ E+ + + Sbjct 368 LTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDNFEISDVTKKAW--- 424 Query 311 RRNYVGYIFQQYGLLPNLTVRENVEVGANLQRNPDKRINIDELLEAVGMKHLQK---KLP 367 R + + Q L T++EN+ +G Q D DE++ A + +LP Sbjct 425 -REKISIVLQDSFLFSG-TIKENIRLGR--QDATD-----DEIIAACKTANAHDFIMRLP 475 Query 368 -----------NELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIK 416 + LS G++Q ++IARA +N ++ DE T ++D+ +++ ++ + Sbjct 476 KGYDTYISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDVHSEKLI-QESIGRL 534 Query 417 QRYKTTMVIVTHNNLIAQLADLVIYVADGKI 447 + KT+ I++H I + A L++ + DGK+ Sbjct 535 MKNKTSF-IISHRLSIIRDATLIMVINDGKV 564 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 61.6 bits (148), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 2/103 (2%) Query 347 RINIDELLEAVGMKHLQK-KLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMT 405 R + E L++VG+K + P+E SGGQ+QR++IARA P LI DE ALD+ + Sbjct 661 RNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQ 720 Query 406 QIVLKQFLAIKQRYKTTMVIVTHN-NLIAQLADLVIYVADGKI 447 V+ + +++ T++ + H+ +++ + + +I + GKI Sbjct 721 AQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKI 763 >gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length=253 Score = 57.8 bits (138), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 17/190 (9%) Query 264 IVILGPSGSGKTTLLNIISGMDRPSSGSVVVNGQEMICMNDRQLTNFRRNYVGYIFQQ-- 321 + ++G +GSGK+TL+ ++ G + G++ ND++LT+ N +G + Q Sbjct 15 LAVIGHNGSGKSTLVKLLGGFLKAKKGTIF--------FNDKELTSVGFNKIGILLQDPD 66 Query 322 YGLLPNLTVRE---NVEVGANLQRNPDKRINIDELLEAVGMKHLQKKLPNELSGGQQQRV 378 LL + +E +E L DK IN E+L V +K Q +LS G++QR Sbjct 67 VQLLADTLHQELIFTLENHGVLASEMDKIIN--EVLTVVELKDKQFTPLKKLSFGEKQRA 124 Query 379 SIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKQRYKTTMVI-VTHNNLIAQLAD 437 A A P + DE LD +++ LK+F+ + + +VI +TH+ LAD Sbjct 125 VFACLLAVKPQIYLLDEAFSMLDNKISN-KLKKFVFDTIKKQNKIVINITHDFNDLFLAD 183 Query 438 LVIYVADGKI 447 +I+++ G + Sbjct 184 EIIFLSKGSL 193 Lambda K H a alpha 0.318 0.134 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 54784183 Query= gi|13507821|ref|NP_109770.1| transketolase 1 [Mycoplasma pneumoniae M129] Length=648 Score E Sequences producing significant alignments: (Bits) Value gi|12044918|ref|NP_072728.1| transketolase (tktA) [Mycoplasma gen... 1006 0.0 >gi|12044918|ref|NP_072728.1| transketolase (tktA) [Mycoplasma genitalium G-37] Length=648 Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/648 (72%), Positives = 548/648 (85%), Gaps = 0/648 (0%) Query 1 MKNLFACQHLALSAIQHAKGGHVGMALGASPILYTLWTKHIQFNPNCPKWINRDRLVMSA 60 MK L+A QHL L+AI+HAKGGHVGMA+GASPIL++L+TKH F+P+ PKWINRDR V+SA Sbjct 1 MKYLYATQHLTLNAIKHAKGGHVGMAIGASPILFSLFTKHFHFDPDQPKWINRDRFVLSA 60 Query 61 GHGSMALYPILHFAGLITKQEMLHHKYGQVNTSSHPEYAPNNFIDASTGPLGQGLGMAVG 120 GHGSMALY I HFAGLI+KQE+L HK+GQ+NTSSHPEYAPNNFIDASTGPLGQG GMAVG Sbjct 61 GHGSMALYSIFHFAGLISKQEILQHKHGQINTSSHPEYAPNNFIDASTGPLGQGFGMAVG 120 Query 121 MALTQRVLAAEFKALSPKLFDHFTYVVVGDGDLQEGVSYEVAHLAGVYQLNKLIVLHDSN 180 M L Q++LA EFK LS KLFDH+TYVVVGDGDLQEGVSYEV+ +AG+Y+LNKLIVLHDSN Sbjct 121 MVLAQKLLANEFKELSDKLFDHYTYVVVGDGDLQEGVSYEVSQIAGLYKLNKLIVLHDSN 180 Query 181 RVQMDSVVRDVSLENLQTRFTNMGWNYLETSDAVADIDAAIKQAKKSDKPTFIEVHTTIA 240 RVQMDS V+ V+ ENL+ RF N+GWNY+ T D + +ID AI +AK+SDKPTFIEV TTIA Sbjct 181 RVQMDSEVKKVANENLKVRFENVGWNYIHTDDQLENIDQAIIKAKQSDKPTFIEVRTTIA 240 Query 241 KNTTLEDQPAGHWFIPTDKDFARFNSNTKTNFTPFEYPQTVYDFFHKQVIARQAKPVQAY 300 KNT LEDQ GHWFIP + DF F T TNF F YP ++Y +F + VI RQ + + Y Sbjct 241 KNTHLEDQYGGHWFIPNEVDFQLFEKRTNTNFNFFNYPDSIYHWFKQTVIERQKQIKEDY 300 Query 301 KELLEKLKDKPLYTKFINWTENDYQALYLNQLDERKVAQANAATRNYLKDFLGQINNSNS 360 LL LKDKPL+ KF NW ++D+QALYLNQLDE+KVA+ ++ATRNYLKDFL QINN NS Sbjct 301 NNLLISLKDKPLFKKFTNWIDSDFQALYLNQLDEKKVAKKDSATRNYLKDFLNQINNPNS 360 Query 361 NLYCLNADVARSCNIKLGDDNLHTNPHSRNIQVGIREFGMSTIMNGMALHGGVKVMGGTF 420 NLYCLNADV+RSC IK+GDDNLH NP SRNIQ+GIREF M+TIMNGMALHGG+KVMGGTF Sbjct 361 NLYCLNADVSRSCFIKIGDDNLHENPCSRNIQIGIREFAMATIMNGMALHGGIKVMGGTF 420 Query 421 LAFADYSKPAIRLGALMNLPTFYVYTHDSYQVGGDGPTHQPYDQLPMLRAIENVQVWRPC 480 LAFADYSKPAIRLGALMNLP FYVYTHDSYQVGGDGPTHQPYDQLPMLRAIENV V+RPC Sbjct 421 LAFADYSKPAIRLGALMNLPVFYVYTHDSYQVGGDGPTHQPYDQLPMLRAIENVCVFRPC 480 Query 481 DEKETAAGVNYGLLSQDQTNVLILTRQALPSLEQSDSVQTLKGGYIISNRKQPDVIVAAS 540 DEKET AG NYGLLSQDQT VL+LTRQ L S++ +DS++TLKGGYI+ +RKQPD+I+AAS Sbjct 481 DEKETCAGFNYGLLSQDQTTVLVLTRQPLKSIDNTDSLKTLKGGYILLDRKQPDLIIAAS 540 Query 541 GSEVQLALQLEQALNEQQLKTRVVSVPNINMLLSQPQSYLQQLFDPNSVLLTLEASASME 600 GSEVQLA++ E+ L +Q +K R++SVPNI +LL Q + YL+ LFD NS L+T+EAS+S E Sbjct 541 GSEVQLAIEFEKVLTKQNVKVRILSVPNITLLLKQDEKYLKSLFDANSSLITIEASSSYE 600 Query 601 WYALAKYVKKHTHLGAFSFGESNDGQVVYEHKGFNVTNLLKLIKTLKS 648 W+ KYVK H HLGAFSFGES+DG VY+ KGFN+ L+K+ +L++ Sbjct 601 WFCFKKYVKNHAHLGAFSFGESDDGDKVYQQKGFNLERLMKIFTSLRN 648 Lambda K H a alpha 0.318 0.133 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 79590940 Query= gi|13507822|ref|NP_109771.1| only a conserved hypothetical,MG067 homolog, from M. genitalium [Mycoplasma pneumoniae M129] Length=533 Score E Sequences producing significant alignments: (Bits) Value gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 577 0.0 gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 289 9e-94 gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 271 1e-86 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 577 bits (1486), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/532 (56%), Positives = 370/532 (70%), Gaps = 22/532 (4%) Query 1 MVKVWKIGFGVFLPTALLFSACSFKDYIPTPSFRKDFSTENNFVKNKVPGKDDIYSKFYD 60 + + WK G +F+P +L S+CSF+ YIPTPS R N++V N VP K++ Y KFYD Sbjct 2 LYRFWKTGLAIFMPGCILLSSCSFRSYIPTPSLRNTVGNHNSYVNNTVP-KNNFYEKFYD 60 Query 61 LTFSLNFVNNQAQEFGTGWLIDWKGDENKNLSKNKEGQTASQTRSSSEQTTD-QDANLFT 119 LTF+LNF N + QEFGTGWLIDWKGDE K+L+ ++ + S+ + QD LF Sbjct 61 LTFALNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKEKQDDKLFI 120 Query 120 AYIATNLHVADGLKNDQDYAPYNKDGWGQPYPYQQKTQSFLLGKYTKPNVQLVKTNYEKP 179 AYIATNLH+ DGLKND DY PYNKDG G +P+ QKTQSFLLG++ P + KP Sbjct 121 AYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKIN------SKP 174 Query 180 EDA--VIEQKLKEDSLLFIQTSTLPKTAYAAIDPVNFSYNPTR-TNGFWTAGKYNV-YNG 235 E+ ++ +LK+D+++FIQTSTLPKTAYA IDP+NF Y+ T +GFWT + + Sbjct 175 EEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFWTKKQSTANFPR 234 Query 236 GNSIGNYADFAVIEVPLVLSNPNDAKIYQEWIRPATQAYKYLGDVEGLFAKKGYRSYIQD 295 ++ +YADFAV+EVPL L N NDAKIYQEWIRPA QAYK LGDVE +FAK Y YI + Sbjct 235 TRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAEYINN 294 Query 296 FYHLLGYPVTKNTKSEFILGQSQGTVNHMSFSNDESNTTNTITKASLTQQPHKEQSAYVV 355 Y+LLGYPVT N K +FILGQ + FS S +QP ++++ YV Sbjct 295 TYYLLGYPVTNNNKYQFILGQDE----KWKFSQQTS------VLKHYQKQPLQQRTVYVE 344 Query 356 RESGLPTLTMNVDKYTGAKGTHLVNVDQITDLSLGDGLIDFGGLSRFILQYHNVNYKQFG 415 R+ GLPTLT N DK T +GT L+NVDQITD +LG+GLI++ GLSRF L YHNV YK FG Sbjct 345 RDDGLPTLTFNEDKLTHVQGTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNVEYKLFG 404 Query 416 YGTILWDTNFGGGSSGSAIFNQNKQINSIYFGALVNVTTDRNENVGLGLGQILRAPNTFN 475 YGTIL +TNF GGSSGSA+FN+ KQ+ SIYFG+L+NVTT N NV LGLGQILR NT N Sbjct 405 YGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRTYNTNN 464 Query 476 SSHEVPYSYDLIFGDVNTTNFYAQFAKKHNTHMWSKIQSTQNGEIGFHKNSK 527 S H P SYDLIFGD NT FYAQFAK+ TH+W+KIQ++ N I F+K+ K Sbjct 465 SKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSSISFYKDKK 516 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 289 bits (739), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 201/513 (39%), Positives = 278/513 (54%), Gaps = 87/513 (17%) Query 22 CSFKDYIPTPSFRKDFSTENNFVKNKVPGKDDIYSKFYDLTFSLNFVNNQAQEFGTGWLI 81 CSF P FR+ F T+ F N +P D Y YDLTFSLNF +N+ +GTGWLI Sbjct 24 CSF----VRPQFRRGFRTQ--FKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLI 77 Query 82 DWKGDENKNLSKNKEGQTASQTRSSSEQTTDQDANLFTAYIATNLHVADGLKNDQDYAPY 141 DWKGDEN N KN F Y+ATNLHV D L+N+ DY PY Sbjct 78 DWKGDEN-NPEKNDP---------------------FKVYLATNLHVIDALRNNNDYEPY 115 Query 142 NKDGWGQPYPYQQKTQSFLLGKYTKPNVQLVKTNYEKPEDAVIEQKLKEDSLLFIQTSTL 201 NKD Q + ++ T+ F +GKYT P++ + N+ +I + ++ + IQTST+ Sbjct 116 NKDSNNQAFNSEEITRFFSIGKYTYPSI-FSELNF------IINAR---EAFVSIQTSTI 165 Query 202 PKTAYAAIDPVNFSYNPTRTNGFWTAGKYNVYNGGNSIGN----YADFAVIEVPLVLSNP 257 PKTAYAA++ V T G+ Y S N YADFAVIE+PL L+N Sbjct 166 PKTAYAAVNFVE------------TQGEDESYTDSLSTDNKRDIYADFAVIEIPLFLTNH 213 Query 258 NDAKIYQEWIRPATQAYKYLGDVEGLFAKKGYRSYIQDFYHLLGYPVTKNTKSEFILGQS 317 D +++ E+I+PA + YK LG+ F KK + D +++LGYP+ +++ IL Q Sbjct 214 RDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQHKNDNFYMLGYPLVESSIDALILNQR 271 Query 318 QGTVNHMSFSNDESNTTNTITKASLTQQPHKEQSAYVVRESGLPTLTMNVDKYTGAKGTH 377 + N + E T T+TK T +E +PTL N K + G+ Sbjct 272 RQYNNSYT----EKYTPQTLTKDQRTIDLSRE----------VPTLIQN--KTENSTGSQ 315 Query 378 LVNVDQITDLSLGDGLIDFGGLSRFILQYHNVNYKQFGYGTILWDTNFGGGSSGSAIFNQ 437 L+ V+Q S +G+I+F L F L YHN +Y+Q+G G L +TNF GSSG+ + N Sbjct 316 LL-VNQSLS-STSEGIIEFIKLPEFKLNYHNKSYRQYGRGFALQNTNFRPGSSGTLMLNN 373 Query 438 NKQINSIYFGALVNVTTDRNENVGL----GLGQILRAP---NTFNSSHEVPYS-YDLIFG 489 KQI IYFG L D E+V L G+GQILR P NT N S S YDLIFG Sbjct 374 QKQIAGIYFGVL-----DFGEDVSLMSNIGVGQILRVPQKNNTRNRSIATNKSNYDLIFG 428 Query 490 DVNTTNFYAQFAKKHNTHMWSKIQSTQNGEIGF 522 D NTTNFYA+FA+++NTH++ I ++++ ++ + Sbjct 429 DSNTTNFYAKFARQNNTHLYQMISNSKDTKLKY 461 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 271 bits (694), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 200/568 (35%), Positives = 275/568 (48%), Gaps = 113/568 (20%) Query 3 KVWKIGFGVFLPTALLFSACSFKDYIPTPSFRKDFSTENN-------------------- 42 K+ +GF + ALL ++CS +P P K+ ST +N Sbjct 9 KLKSLGFSLISLQALL-ASCSAVSPVPVPIEEKNDSTTDNNATPFKDEQSDQGTEVNQQP 67 Query 43 ------------FVKNKVPGKDDIYSKFYDLTFSLNFVNNQAQEFGTGWLIDWKGDENKN 90 F + +P + DIY K YDLTF+LNF + +GTGWLIDWKGDEN Sbjct 68 KVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKGDEN-- 125 Query 91 LSKNKEGQTASQTRSSSEQTTDQDANLFTAYIATNLHVADGLKNDQDYAPYNKDGWGQPY 150 T Q F AYIATNLHVADGL+N D+ PY+K + + Sbjct 126 --------------------TTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREF 165 Query 151 PYQQKTQSFLLGKYTKPNVQLVKTNYEKP-EDAVIEQKLKEDSLLFIQTSTLPKTAYAAI 209 + T F +GKYT KT+ K ++ +EQ+ DSLL IQTS +PKTAY A Sbjct 166 NEYESTVYFSIGKYTN------KTDITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTAT 219 Query 210 DPVNFSYNPTRTNGFWTAGKYNVYNGGNSIGN-YADFAVIEVPLVLSNPNDAKIYQEWIR 268 N G NSI YADFAVIE+ L L N D +I+ E+I+ Sbjct 220 ---------------------NFLKGVNSIKPVYADFAVIELELNLENLRDWQIFNEFIK 258 Query 269 PATQAYKYLGDVEGLFAKKGYRSYIQDFYHLLGYPVTKNTKSEFILGQSQGTVNHMSFSN 328 PA YK LGD +F K + ++LLGYPV + G Q N + Sbjct 259 PAINTYKSLGDSTNIFETKDLEQHWNHSHYLLGYPVLER-------GYDQ---NRLLEQK 308 Query 329 DESNTTNTITKASLTQQPHKEQSAYVVRESGLPTLTMNVDK------YTGAKGTHLVNVD 382 +E T+ + S Q + + V +P +T N K +K T +VD Sbjct 309 EEFARTHNFNQKS---QLWSKNTYLVSTAKEIPVITKNARKDGQIGSEIFSKKTQDSHVD 365 Query 383 QITDLSLGDGLIDFGGLSRFILQYHNVNYKQFGYGTILWDTNFGGGSSGSAIFNQNKQIN 442 ++ + G++ F F L+YH+ Y+Q+GYG +L DTN GGSSGSAIFN N++IN Sbjct 366 KV--IKHEKGIVTFQNFKNFKLKYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQKIN 423 Query 443 SIYFGALVNVTTDRNENVGLGLGQILRAPNTFNSSHEVPYS--------YDLIFGDVNTT 494 SIYFG L + +G+ Q+LR + ++ + YDLIFGD NT Sbjct 424 SIYFGVLEVYKNSKTHKDNIGMSQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSNTK 483 Query 495 NFYAQFAKKHNTHMWSKIQSTQNGEIGF 522 +FYAQFAKKHNTH++ +I+S++ E + Sbjct 484 SFYAQFAKKHNTHLYDQIKSSEKEEFKY 511 Lambda K H a alpha 0.315 0.133 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 63950082 Query= gi|13507823|ref|NP_109772.1| hypothetical protein MPN084 [Mycoplasma pneumoniae M129] Length=524 Score E Sequences producing significant alignments: (Bits) Value gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 447 2e-155 gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 332 5e-110 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 308 6e-101 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 447 bits (1149), Expect = 2e-155, Method: Compositional matrix adjust. Identities = 243/485 (50%), Positives = 322/485 (66%), Gaps = 48/485 (10%) Query 21 GCGYVRLK-RANFQTDFTINRIPTQGDVYHDNYDLTFSLNFATSSKDSYGTGWLIDWKGD 79 GC +VR + R F+T F IN IPT D YH NYDLTFSLNFA++ +++YGTGWLIDWKGD Sbjct 23 GCSFVRPQFRRGFRTQFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGD 82 Query 80 ENKPSNTDPFLIYLATNLHVVDALRNPQDYEPYNKDSNGQDYGNRDITHFFALGKYTDPG 139 EN P DPF +YLATNLHV+DALRN DYEPYNKDSN Q + + +IT FF++GKYT P Sbjct 83 ENNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPS 142 Query 140 L---LGVETKEQSAFISIQTSAIPKTAYTANDFVDYQYDSLTKQWNKKSDQKDQTQEQTV 196 + L + AF+SIQTS IPKTAY A +FV+ Q + + + +D K Sbjct 143 IFSELNFIINAREAFVSIQTSTIPKTAYAAVNFVETQGEDESYTDSLSTDNK-------- 194 Query 197 IGQSWSYKPAYADFAVIEVPLFLDNVRDKQVFDYFVKPAIETYKKLGDTAQLFTEQNLKE 256 + YADFAVIE+PLFL N RD QVF+ F+KPAIETYK+LG+++ F ++ L + Sbjct 195 -------RDIYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQ 245 Query 257 LEKETYIMLGYPVVESNIYAHILGQGKELRVTQQVNNQPVKKNYVLQTITKEQHTLDITR 316 + + + MLGYP+VES+I A IL Q + Q NN +K Y QT+TK+Q T+D++R Sbjct 246 HKNDNFYMLGYPLVESSIDALILNQRR------QYNNSYTEK-YTPQTLTKDQRTIDLSR 298 Query 317 EIPTLIQNKSLSGDFVGSKLLSQEEQQQEHAFLGNLNQGIIDFARLSNFNLQYHNREYQQ 376 E+PTLIQNK+ + GS+LL + L + ++GII+F +L F L YHN+ Y+Q Sbjct 299 EVPTLIQNKTENS--TGSQLLVNQS-------LSSTSEGIIEFIKLPEFKLNYHNKSYRQ 349 Query 377 YGKGLALANTNFSGGSSGTLVLNQQKQISGVYFGVLEFGGTNGTNRESSIGVGQILRVKD 436 YG+G AL NTNF GSSGTL+LN QKQI+G+YFGVL+FG + S+IGVGQILRV Sbjct 350 YGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFG--EDVSLMSNIGVGQILRVPQ 407 Query 437 DAQLQQHSHNNLLSQLGSSHNSITYDIIFGNKDTKNYYAQFAKKHQTHLYSQISSSNQQE 496 + S + N YD+IFG+ +T N+YA+FA+++ THLY IS+S + Sbjct 408 KNNTRNRS---------IATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDTK 458 Query 497 LKYVD 501 LKYV+ Sbjct 459 LKYVN 463 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 332 bits (851), Expect = 5e-110, Method: Compositional matrix adjust. Identities = 196/486 (40%), Positives = 277/486 (57%), Gaps = 50/486 (10%) Query 25 VRLKRANFQTDFTINRIPTQGDVYHDNYDLTFSLNFATSSKDSYGTGWLIDWKGDENKPS 84 V K N F + IP + D+Y YDLTF+LNF + S DSYGTGWLIDWKGDEN Sbjct 69 VEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKGDENTTQ 128 Query 85 NTDPFLIYLATNLHVVDALRNPQDYEPYNKDSNGQDYGNRDITHFFALGKYTDP----GL 140 F Y+ATNLHV D LRN D+ PY+K + +++ + T +F++GKYT+ L Sbjct 129 KQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTDITKL 188 Query 141 LGVETKEQ----SAFISIQTSAIPKTAYTANDFVDYQYDSLTKQWNKKSDQKDQTQEQTV 196 E EQ + +SIQTS IPKTAYTA +F+ K N Sbjct 189 YQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFL--------KGVN-------------- 226 Query 197 IGQSWSYKPAYADFAVIEVPLFLDNVRDKQVFDYFVKPAIETYKKLGDTAQLFTEQNLKE 256 S KP YADFAVIE+ L L+N+RD Q+F+ F+KPAI TYK LGD+ +F ++L++ Sbjct 227 -----SIKPVYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQ 281 Query 257 LEKETYIMLGYPVVESNI-YAHILGQGKELRVTQQVNNQPVKKNYVLQTITKEQHTLDIT 315 ++ +LGYPV+E +L Q +E T N + Q +K + + Sbjct 282 HWNHSHYLLGYPVLERGYDQNRLLEQKEEFARTHNFNQKS-------QLWSKNTYLVSTA 334 Query 316 REIPTLIQNKSLSGDFVGSKLLSQEEQQQEHAFLGNLNQGIIDFARLSNFNLQYHNREYQ 375 +EIP + +N G +GS++ S++ Q + +GI+ F NF L+YH++EYQ Sbjct 335 KEIPVITKNARKDGQ-IGSEIFSKKTQDSHVDKVIKHEKGIVTFQNFKNFKLKYHDKEYQ 393 Query 376 QYGKGLALANTNFSGGSSGTLVLNQQKQISGVYFGVLEFGGTNGTNRESSIGVGQILRVK 435 QYG GL L +TN GGSSG+ + N ++I+ +YFGVLE + T+++ +IG+ Q+LR Sbjct 394 QYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKD-NIGMSQLLRTS 452 Query 436 DDAQLQQHSHNNLLSQLGSSHNSITYDIIFGNKDTKNYYAQFAKKHQTHLYSQISSSNQQ 495 ++ S N + YD+IFG+ +TK++YAQFAKKH THLY QI SS ++ Sbjct 453 -----KRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHLYDQIKSSEKE 507 Query 496 ELKYVD 501 E KYVD Sbjct 508 EFKYVD 513 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 308 bits (790), Expect = 6e-101, Method: Compositional matrix adjust. Identities = 200/545 (37%), Positives = 299/545 (55%), Gaps = 94/545 (17%) Query 1 MLLRSVWYKLGSLLIILPLTGCGYVRLKRANFQT---------------DFTINRIPTQG 45 ML R ++K G L I +P GC + L +F++ + N +P + Sbjct 1 MLYR--FWKTG-LAIFMP--GC--ILLSSCSFRSYIPTPSLRNTVGNHNSYVNNTVP-KN 52 Query 46 DVYHDNYDLTFSLNFATSSKDSYGTGWLIDWKGDENKPSNT------------------- 86 + Y YDLTF+LNF +GTGWLIDWKGDE K NT Sbjct 53 NFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKE 112 Query 87 ----DPFLIYLATNLHVVDALRNPQDYEPYNKDSNGQDYGNRDITHFFALGKYTDPGL-- 140 F+ Y+ATNLH++D L+N DY+PYNKD NG + T F LG++ +P + Sbjct 113 KQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKINS 172 Query 141 ------LGVETK-EQSAFISIQTSAIPKTAYTANDFVDYQYDSLTKQ---WNKKSDQKDQ 190 V+T+ +Q A + IQTS +PKTAY D +++ Y + + W KK + Sbjct 173 KPEEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFWTKKQSTANF 232 Query 191 TQEQTVIGQSWSYKPAYADFAVIEVPLFLDNVRDKQVFDYFVKPAIETYKKLGDTAQLFT 250 + +T+ +YADFAV+EVPLFLDN D +++ +++PA++ YK+LGD +F Sbjct 233 PRTRTL--------KSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFA 284 Query 251 EQNLKELEKETYIMLGYPVVESNIYAHILGQGKELRVTQQVNNQPVKKNYVLQTITKEQH 310 + E TY +LGYPV +N Y ILGQ ++ + +QQ + V K+Y Q + +Q Sbjct 285 KTPYAEYINNTYYLLGYPVTNNNKYQFILGQDEKWKFSQQTS---VLKHYQKQPL--QQR 339 Query 311 TLDITRE--IPTLIQNKSLSGDFVGSKLLSQEEQQQEHAFLGNLNQGIIDFARLSNFNLQ 368 T+ + R+ +PTL N+ G+ L++ ++ NL G+I++A LS F L Sbjct 340 TVYVERDDGLPTLTFNEDKLTHVQGTDLINVDQITDT-----NLGNGLINYAGLSRFTLS 394 Query 369 YHNREYQQYGKGLALANTNFSGGSSGTLVLNQQKQISGVYFGVLEFGGTNGTNRESSIGV 428 YHN EY+ +G G L NTNF GGSSG+ V N++KQ++ +YFG L T G NR ++G+ Sbjct 395 YHNVEYKLFGYGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSL-INVTTGNNRNVNLGL 453 Query 429 GQILRVKDDAQLQQHSHNNLLSQLGSSHNSI-TYDIIFGNKDTKNYYAQFAKKHQTHLYS 487 GQILR ++ NN S H++ +YD+IFG+K+T +YAQFAK+ QTHL++ Sbjct 454 GQILRT--------YNTNN------SKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWN 499 Query 488 QISSS 492 +I +S Sbjct 500 KIQTS 504 Lambda K H a alpha 0.315 0.132 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 62693421 Query= gi|13507824|ref|NP_109773.1| adhesin P1 (group2) homolog [Mycoplasma pneumoniae M129] Length=440 ***** No hits found ***** Lambda K H a alpha 0.329 0.142 0.429 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 51599099 Query= gi|13507825|ref|NP_109774.1| adhesin P1 (group2) homolog [Mycoplasma pneumoniae M129] Length=105 ***** No hits found ***** Lambda K H a alpha 0.334 0.143 0.430 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6779158 Query= gi|13507826|ref|NP_109775.1| adhesin P1 (group2) homolog [Mycoplasma pneumoniae M129] Length=150 ***** No hits found ***** Lambda K H a alpha 0.336 0.151 0.450 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12653019 Query= gi|13507827|ref|NP_109776.1| hypothetical protein MPN088 [Mycoplasma pneumoniae M129] Length=101 ***** No hits found ***** Lambda K H a alpha 0.309 0.124 0.333 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6357851 Query= gi|13507828|ref|NP_109777.1| hypothetical protein MPN089 [Mycoplasma pneumoniae M129] Length=335 ***** No hits found ***** Lambda K H a alpha 0.318 0.135 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37373160 Query= gi|13507829|ref|NP_109778.1| adhesin P1 (group2) homolog [Mycoplasma pneumoniae M129] Length=329 ***** No hits found ***** Lambda K H a alpha 0.330 0.141 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36523770 Query= gi|13507830|ref|NP_109779.1| hypothetical protein MPN091 [Mycoplasma pneumoniae M129] Length=138 ***** No hits found ***** Lambda K H a alpha 0.319 0.132 0.463 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11089996 Query= gi|13507831|ref|NP_109780.1| involved in cytadherence [Mycoplasma pneumoniae M129] Length=173 ***** No hits found ***** Lambda K H a alpha 0.319 0.135 0.426 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15602652 Query= gi|13507832|ref|NP_109781.1| involved in cytadherence [Mycoplasma pneumoniae M129] Length=301 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 325 1e-105 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 325 bits (834), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 163/299 (55%), Positives = 217/299 (73%), Gaps = 11/299 (4%) Query 1 MGSNAVPSLWYWVV---GEDQESGRATWWAHTELNWGTDKQKQFVENQLGFKDDSNSDSK 57 MG++ +PS+WYWVV ++ S + TW+A+T L+WG DKQKQFVENQLG+K+ ++++S Sbjct 312 MGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWGEDKQKQFVENQLGYKETTSTNSH 371 Query 58 NSNLKAQGLTQPAYLIAGLDVVADHLVFAAFKAGAVGYDMSTENSAA---TKDQALAWST 114 N ++ TQPAYLI+G+D V D ++F+ FKAG+VGYD S+ +S++ TKDQALAWST Sbjct 372 N--FHSKSFTQPAYLISGIDSVNDQIIFSGFKAGSVGYDSSSSSSSSSSSTKDQALAWST 429 Query 115 TAGLDSAGGYKALVENTAGLNGPINGLFTLLDSFAYVTPVSGMKGGSQNNEEVQTKYPVK 174 T LDS GYK LV N GLNGPING F++ D+F++V P SG + ++T YPVK Sbjct 430 TTSLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFVVPYSGNHTNNGTTGPIKTAYPVK 489 Query 175 DDSKASAKIASLINASPLNSYGDDGVTVFDALGLNFNFKLNEARLPSRTDQLLVYGIVNE 234 D K++ KI SLINA+PLNSYGD+G+ VFDALGLN+NFK N+ RLPSRTDQ+ VYGIV+ Sbjct 490 KDQKSTVKINSLINATPLNSYGDEGIGVFDALGLNYNFKSNQERLPSRTDQIFVYGIVSP 549 Query 235 SELKSARENAQSTSDANSNTKVKWTNTASHYLPVPYYYSANFPEVGNRRRAEQRNGVIT 293 +EL+SA+ +A ST S+TKV W+NT S YLPVPY YS + +R E R +T Sbjct 550 NELRSAKSSADSTG---SDTKVNWSNTQSRYLPVPYNYSEGIIDADGFKRPENRGASVT 605 Lambda K H a alpha 0.310 0.127 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32813319 Query= gi|13507833|ref|NP_109782.1| hypothetical protein MPN094 [Mycoplasma pneumoniae M129] Length=140 ***** No hits found ***** Lambda K H a alpha 0.313 0.131 0.355 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11381838 Query= gi|13507834|ref|NP_109783.1| aa_permeases [Mycoplasma pneumoniae M129] Length=254 ***** No hits found ***** Lambda K H a alpha 0.329 0.140 0.444 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26601162 Query= gi|13507835|ref|NP_109784.1| aa_permeases [Mycoplasma pneumoniae M129] Length=264 ***** No hits found ***** Lambda K H a alpha 0.328 0.145 0.463 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27793935 Query= gi|13507836|ref|NP_109785.1| hypothetical protein MPN097 [Mycoplasma pneumoniae M129] Length=541 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 490 3e-168 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 348 7e-114 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 490 bits (1262), Expect = 3e-168, Method: Compositional matrix adjust. Identities = 268/529 (51%), Positives = 345/529 (65%), Gaps = 58/529 (11%) Query 14 LGLSIVLASCGARGKFDQVDDGKIKLASSLTSRSASAALQKVVEKYNKVKGVNDYPIEIT 73 G S +L +C +FDQVDDGKIKLASSLTS+ A+ AL+ VV+KYN K DYPIEI Sbjct 14 FGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYNDTKDPGDYPIEIV 73 Query 74 QIAGGYDGGRTDLQTRVSVKDKTSFYNMILNYPDLVSVLARNGMELPFDGVNVDKLSPNF 133 QIAGGYDGG+ D+QT+VS KDK +FYN+ILNYP++VS L+R+ M L FDGVNVDKL PNF Sbjct 74 QIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALNFDGVNVDKLHPNF 133 Query 134 LKFNERISGVAKKANYAIPISMSTDILILNAPVLHYILNSAKKNDGNTKVQVKAQSKDSQ 193 L FN RI G+ YAIPISMSTD++++N PVLHYILNSA+K T V+A Sbjct 134 LSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTPTSTTVQATVSSRS 193 Query 194 TKVKGTMEIGTDESTKNLWSDIQKKAGENGKATTEGTKKAAAKSTHLTLLTKSEQSTQGN 253 + KGT+EI D T LW +IQ A N TT+ K+ S+ + + + ++ Sbjct 194 AEKKGTLEIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSSSTTSTTGETKD-- 251 Query 254 NGASESDKKIEETWGTYSEVDGGLKNYTFKADVFDTWHGLIDFSTRVAKSFKNKVSDIST 313 ++SD KI+E WG Y EVDGGLKN+TFKA +F+ W+ +DF+TR+A SF KV +I+ Sbjct 252 --TTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDFATRIANSFPEKVKNITN 309 Query 314 KKGTDIQGVLGLDSTPNALFTSVFAAGDSNFDNFFYKV--KDGRADFSNFNENGTSYKNL 371 K G D+QGVLG+DS+ NAL+ +VFAAG +N+DNFF+ + + G AD+SNF +SY+NL Sbjct 310 KTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYADYSNFLNKDSSYQNL 369 Query 372 EKVFNDYKKLTDSNGLFVNKGGSYTSNFQKFHQLAYSISSSSGYAYAFAGENSKRLKFND 431 E V+ND+ KL +NGLFVN+GGSY+SNF+KFHQLA+S+SSS GY+Y FA +N+KRLKF++ Sbjct 370 ESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSGGYSYYFAKDNAKRLKFSN 429 Query 432 DTFIEYPSFTQEIHAPGQSSQKEGGQQQSNSKDNGNLLGTFTIEAAKSKTKTEVKKTEDT 491 IEYPSFTQ I AP SS+ E NLLGTF + Sbjct 430 YA-IEYPSFTQTIQAPN-SSETE-----------SNLLGTFKLSE--------------- 461 Query 492 QNQGKKAEGTPNQGKKAEGTENQGKTIFLYKTSIPNDKQDGVDAVLIKD 540 K I LYK SIP+ KQ GVDA+LI + Sbjct 462 ------------------------KDINLYKGSIPSGKQQGVDAILISN 486 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 348 bits (893), Expect = 7e-114, Method: Compositional matrix adjust. Identities = 213/545 (39%), Positives = 313/545 (57%), Gaps = 75/545 (14%) Query 1 MQFKYGALIFSGFLGLSIVLASCGARGKFDQVDDGKIKLASSLTSRSASAALQKVVEKYN 60 M+FK L S +++ +C A +FDQVDDGKIKLA+ +TS SAS +L ++ KYN Sbjct 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKYN 59 Query 61 KVKGVNDYPIEITQI--AGGYDGGRTDLQTRVSVKDKTSFYNMILNYPDLVSVLARNGME 118 K NDYP+E+ + G Y G+ DLQ ++ KDK +FYN+ NY D+VS+L+R+ ME Sbjct 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query 119 LPFDGVNVDKLSPNFLKFNERISGVAKKANYAIPISMSTDILILNAPVLHYILNSAKKND 178 L FD V+ P+FL FN IS V + YA+P ++S ++L+LN PVLHYIL+SAKK D Sbjct 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKK-D 178 Query 179 GNTKVQVKAQSKDSQTKVKGTMEIGTDESTKNLWSDIQKKAGENGKATTEGTKKAAAKST 238 NT + + S +S KGTM + +D T +LW+ ++ A N + T Sbjct 179 SNTTLSTHSASNNSN---KGTMVVASDSETSSLWTKLEAAAKMNAQ-------------T 222 Query 239 HLTLLTKSEQSTQGNNGASESDKKIEETWGTYSEVDGGLKNYTFKADVFDTWHGLIDFST 298 + T + KS S +N SD +I++ WG Y EVDGGLKNYTFKA VF+ W L DF+T Sbjct 223 NETQVLKSNSS--ESNQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLNDFAT 280 Query 299 RVAKSFKNKVSDISTKKGTDIQGVLGLDSTPNALFTSVFAAGDSNFDNFFYKVKDGRADF 358 R+AKSF +TKKG ++Q V G+ S NAL+T++FA+G ++++NF + +K+ R +F Sbjct 281 RIAKSFTKL--QTTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRINF 338 Query 359 SN-FNENGTSYKNLEKVFNDYKKLTDSNGLFVNKG-GSYTSNFQKFHQLAYSISSSSGYA 416 SN FN++ T+++NL+ +FN +K L D NGL N + +++ KF+QLA+ SS++ + Sbjct 339 SNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTARFP 398 Query 417 YAFAGENSKRLKFNDDTFIEYPSFTQEIHAPGQSSQKEGGQQQSNSKDNGNLLGTFTIEA 476 Y+FA ++ KRL ND T I S E S+S +N NL+GT ++E Sbjct 399 YSFASDSVKRLIVNDKT----------IENKNNKSVFEVN-LSSDSDNNSNLIGTVSLE- 446 Query 477 AKSKTKTEVKKTEDTQNQGKKAEGTPNQGKKAEGTENQGKTIFLYKTSIPNDKQDGVDAV 536 K + LY+ + ++KQ GVDA+ Sbjct 447 -------------------------------------NSKQVSLYEKQVDSNKQIGVDAL 469 Query 537 LIKDK 541 LIKD+ Sbjct 470 LIKDE 474 Lambda K H a alpha 0.310 0.128 0.354 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 65067114 Query= gi|13507837|ref|NP_109786.1| hypothetical protein MPN098 [Mycoplasma pneumoniae M129] Length=147 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 155 8e-47 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 110 1e-30 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 155 bits (393), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 91/185 (49%), Positives = 112/185 (61%), Gaps = 38/185 (21%) Query 1 MMTQGPNLIGIHTNTKENEETQKFVNWFLNTSLT-WDNN--------ESKTPAQYFTESA 51 M+TQGPNLIGIH N KEN ET+KFVNWFLN S+T W++N +KT A+YFT+ A Sbjct 581 MITQGPNLIGIHANEKENIETKKFVNWFLNQSITDWNSNNQQKNSDQTTKTAAEYFTDQA 640 Query 52 SYILPLKETFTGS--------------------------NNKGQSGKNDGKNSNN---TF 82 SYILPLKE F S NN + K +NN TF Sbjct 641 SYILPLKEKFNKSSDLELKGSSSSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNTF 700 Query 83 KAKALELFKEQSENKIVGYSDPSDFRGGKFRESIGSAFNATVNSHVDFNTFVANFRANLG 142 AKALELF++ + N+I+ +SDPSDFR G FR +I S+FNA VNS V FN FV NF +LG Sbjct 701 TAKALELFQQAANNEIIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLG 760 Query 143 SGYDK 147 SG+ + Sbjct 761 SGFRR 765 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 110 bits (274), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 16/143 (11%) Query 2 MTQGPNLIGIHTNTKENEETQKFVNWFLNTSLTWDNNESKTPAQYFTESASYILPLKETF 61 + QGP+LIGIH N +E+ ET+KFVNW+LNT + W+ N KTPA+Y + ASY+LP K Sbjct 569 LVQGPSLIGIHANEREDIETKKFVNWYLNTKVQWEENSIKTPAEYVADKASYLLPFKNRL 628 Query 62 TGSNNKGQSGKNDGKNSNNTFKAKALELFKEQSENKIVGYSDPSDFRGGKFRESIGSAFN 121 + NS N F A+ F +++ + +++P+DF K R+ + S N Sbjct 629 NNT------------NSYNEFVKTAVSQFADKN---VTKFAEPADFLSNKVRDGVKSNLN 673 Query 122 ATVNSH-VDFNTFVANFRANLGS 143 A +N+H +DF++F+ + LGS Sbjct 674 AAINNHSIDFDSFINDLTDYLGS 696 Lambda K H a alpha 0.310 0.127 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12216708 Query= gi|13507838|ref|NP_109787.1| hypothetical protein MPN099 [Mycoplasma pneumoniae M129] Length=347 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 150 9e-42 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 150 bits (378), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 100/233 (43%), Positives = 140/233 (60%), Gaps = 37/233 (16%) Query 1 MLGSIPVLVNRSGSDSNKF-QATDQKWSYTDLQSDQTKLNLSAYGEVNGLLNPALVETY- 58 +LG+IPVL+N+SG +++F + ++QKW T+ NL +GEVNGL N AL+ TY Sbjct 915 LLGTIPVLINKSGDSNDQFNKDSEQKWDKTETNEG----NLPGFGEVNGLYNAALLHTYG 970 Query 59 -FGTTRTSSTANQNSTTVPGIGFKIPEQNNDSKATLITPGLAWTPQDVGNLVV-SGTTVS 116 FGT N NST P IGFK + ++ S +TL+ GL WT QDVGNLVV + T+ Sbjct 971 FFGT-------NTNSTD-PKIGFKA-DSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFG 1021 Query 117 FQLGGWLVTFTDFVKPRAGYLGLQLSGLNASDSDQRELIWAPRPWAAFRGSWVNRLGRVE 176 FQLGGW +TFTDF++PR GYLG+ LS L + +IWA +PW +F+GS+++ G + Sbjct 1022 FQLGGWFITFTDFIRPRTGYLGITLSSL-----QDQTIIWADQPWTSFKGSYLDSDGTPK 1076 Query 177 SVWDLKGVWADQAQLAAQAATSSTTTTATGATLPE-----HPNAL-AYQISYT 223 S+WD A ++ +S+TT T TL PN + AYQ + T Sbjct 1077 SLWD---------PTALKSLPNSSTTYDTNPTLSPSFQLYQPNKVKAYQTTNT 1120 Lambda K H a alpha 0.310 0.127 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39071940 Query= gi|13507839|ref|NP_109788.1| hypothetical protein MPN100 [Mycoplasma pneumoniae M129] Length=183 ***** No hits found ***** Lambda K H a alpha 0.310 0.130 0.348 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17047342 Query= gi|13507840|ref|NP_109789.1| hypothetical protein MPN101 [Mycoplasma pneumoniae M129] Length=428 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 271 1e-82 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 271 bits (694), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 155/370 (42%), Positives = 203/370 (55%), Gaps = 54/370 (15%) Query 25 TEAALTASTTFALRRYDLAGRALYDLDFSRL-NPQTPTRDQTGQITFNPFGGFGLSGAAP 83 E L FA+RRYD GRALYD++ +++ NP T R G+ F+PF GFGL+G AP Sbjct 118 VEKYLDGQQNFAIRRYDNNGRALYDINLAKMENPSTVQRGLNGEPIFDPFKGFGLTGNAP 177 Query 84 QQWNEVKNKVPVEVAQDPSNPYRFAVLLVPRSVVYYEQLQRGLALPNQGSSSGSGQQNTT 143 WNE+K KVPVEV Q P +P + VLLVP+ + Y L N Sbjct 178 TDWNEIKGKVPVEVVQSPHSPNLYFVLLVPKVALEYHNL------------------NNQ 219 Query 144 IGAYGLKVKNAEADTAKSNEKLQGDE-----SKSSNGSSSTSTTTQRGGSSGDTKVKALQ 198 + L+VK A + ++LQ D SK S T+ ++ G + T+ KAL+ Sbjct 220 VVKESLEVK-ATQSSFNPTQRLQKDSPVKDSSKQGEKLSETTASSMSSGMATSTRAKALK 278 Query 199 VAVKKKSGSQGNSGEQGTEQVELESNDLANAPIKRGEESGQSVQLKAADFGTTPSSSGSG 258 V V E+G++ L ND A P+K SG+ V+L+A T Sbjct 279 VEV-----------ERGSQSDSLLKNDFAKKPLKHKNSSGE-VKLEAEKEFTEA------ 320 Query 259 GNSNPGSPTPWRPWLATEQIHKDLPKWSASILILYDAPYARNRTAIDRVDHLDPKVMTAN 318 W+P L T+QI ++ A+++ YDAPY+ N TA VDH+DPK M N Sbjct 321 ----------WKPLLTTDQIARE-KGMGATVVSFYDAPYSENHTAFGLVDHIDPKKMVEN 369 Query 319 YPPSWRTPKWNHHGLWDWKARDVLLQTTGFFNSRRHPEWFDQGQAVADNTQTGFDTDDTD 378 YPPSW+TPKWNHHG+WD+ AR++LLQTTGFFN RRHPEWFD+GQA ADNT GF DTD Sbjct 370 YPPSWKTPKWNHHGIWDYNARNLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTD 429 Query 379 NKKTRLSKGS 388 +KK K S Sbjct 430 HKKDGFKKNS 439 Lambda K H a alpha 0.311 0.128 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 49911935 Query= gi|13507841|ref|NP_109790.1| involved in cytadherence [Mycoplasma pneumoniae M129] Length=272 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 157 2e-45 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 157 bits (398), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/225 (42%), Positives = 127/225 (56%), Gaps = 57/225 (25%) Query 44 FQKYLNTAQALHQMGVIVPELSQGGWQSQTARHSSTRGLQSAGANRGASLAARTTTTVGV 103 F KYLNT QAL +G++ + QT R Sbjct 265 FNKYLNTKQALESIGIL--------FDDQTPR---------------------------- 288 Query 104 GRRDSTSTTLELPNVITQLYHTSTSQLAYLNGQIVVMGSNAVPSLWYWVVD---ERTTSG 160 NVITQLY+ STS+LA N IVVMG++ +PS+WYWVV+ + S Sbjct 289 -------------NVITQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASN 335 Query 161 RATWWAKTHLNFGTEVQKNFVENQLGFKSEDNSNTSLTNFKSQGLTQPAYLISGLDVVAD 220 + TW+A T+L++G + QK FVENQLG+K ++N+ NF S+ TQPAYLISG+D V D Sbjct 336 KPTWFANTNLDWGEDKQKQFVENQLGYKETTSTNSH--NFHSKSFTQPAYLISGIDSVND 393 Query 221 HLVFAAFKAGAVGYD---MTTDSNASTYNQALTWSTTAGLDSDGG 262 ++F+ FKAG+VGYD ++ S++ST +QAL WSTT LDS G Sbjct 394 QIIFSGFKAGSVGYDSSSSSSSSSSSTKDQALAWSTTTSLDSKTG 438 Lambda K H a alpha 0.312 0.124 0.361 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28934199 Query= gi|13507842|ref|NP_109791.1| hypothetical protein MPN103 [Mycoplasma pneumoniae M129] Length=172 ***** No hits found ***** Lambda K H a alpha 0.339 0.148 0.540 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15458183 Query= gi|13507843|ref|NP_109792.1| hypothetical protein MPN104 [Mycoplasma pneumoniae M129] Length=104 ***** No hits found ***** Lambda K H a alpha 0.308 0.129 0.317 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6631785 Query= gi|13507844|ref|NP_109793.1| phenylalanyl-tRNA synthetase alpha-subunit [Mycoplasma pneumoniae M129] Length=341 Score E Sequences producing significant alignments: (Bits) Value gi|12045046|ref|NP_072856.1| phenylalanyl-tRNA synthetase, subuni... 476 4e-172 >gi|12045046|ref|NP_072856.1| phenylalanyl-tRNA synthetase, subunit alpha (pheS) [Mycoplasma genitalium G-37] Length=341 Score = 476 bits (1226), Expect = 4e-172, Method: Compositional matrix adjust. Identities = 230/341 (67%), Positives = 265/341 (78%), Gaps = 0/341 (0%) Query 1 MIDQSKLIERWKTTFETAQNPTELLAFKNSFRNADLKPLLSQIKETTDIETKRHLGQLYK 60 MIDQ+KLI +WK F A+N T L+ KN+ N+DLKPLL +IK T + K LG+LY+ Sbjct 1 MIDQNKLITKWKKAFAKAKNLTTLVNLKNTLHNSDLKPLLQKIKTATKLSEKSSLGKLYQ 60 Query 61 QLESTLQTLHDTQLQVFTQAQSSSVLTHGDVMLLATSFAPGSSNIIYQVIDELVNYFKKF 120 L+ L L + + F S DVML AT F GS+N +YQVID LV YFK F Sbjct 61 SLDIQLTDLLTSYKKTFEINNQVSQKPSLDVMLPATEFTNGSNNALYQVIDNLVEYFKSF 120 Query 121 LFTVNYDSELTTIADCFDLLNIPKDHPSRNLTDTFYLDKNRLLRTHCTAATLRAVKETKK 180 LFT+N+DSELT+I+DCFDLLNIPKDH SRN +D+FY+DK LLRTHCTA TL+AV+ +KK Sbjct 121 LFTINFDSELTSISDCFDLLNIPKDHSSRNESDSFYIDKTSLLRTHCTATTLKAVRTSKK 180 Query 181 SNNPDIRIASFGAVFRKDDDDATHSHQFNQLDFMWIKKDFSLTNLKWFMQNMINHIFGEN 240 +NNPDIR+ S GAVFR D DDATHSHQF QLDFMWIKK SL NLKWF+ NMI H FGEN Sbjct 181 TNNPDIRVVSLGAVFRNDSDDATHSHQFTQLDFMWIKKGLSLANLKWFINNMITHFFGEN 240 Query 241 TSARFRLSHFPFTEPSFEIDIRCWLCQNGCGVCKKTRWIEVLGAGILHPQVMANMGFSDT 300 T RFRLSHFPFTEPSFEIDIRCWLCQNGC +CK+T+WIE+LGAGI+HPQVM NMG DT Sbjct 241 TFTRFRLSHFPFTEPSFEIDIRCWLCQNGCSICKQTKWIEILGAGIIHPQVMNNMGIGDT 300 Query 301 DNIRGIAAGIGIERLVMLKHGISDIRDLYDNNFKFLAQFTD 341 +NI GIAAGIGIERL MLK+GI DIRD YDNNFKFL QFTD Sbjct 301 ENITGIAAGIGIERLAMLKYGIDDIRDFYDNNFKFLTQFTD 341 Lambda K H a alpha 0.323 0.136 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 38222550 Query= gi|13507845|ref|NP_109794.1| phenylalanyl-tRNA synthetase beta chain [Mycoplasma pneumoniae M129] Length=805 Score E Sequences producing significant alignments: (Bits) Value gi|12045047|ref|NP_072857.1| phenylalanyl-tRNA synthetase, subuni... 980 0.0 >gi|12045047|ref|NP_072857.1| phenylalanyl-tRNA synthetase, subunit beta (pheT) [Mycoplasma genitalium G-37] Length=806 Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/806 (59%), Positives = 631/806 (78%), Gaps = 1/806 (0%) Query 1 MLISKKTLAVLIPEITHVSNNEICEKLQQIGIEVEAIRAFKNPDYLQLGILRAVTPHPHD 60 MLISKKTL VLIP+I SN++I +KL+Q+GIEVE+I+ F +PDYLQL + ++ PHPHD Sbjct 1 MLISKKTLGVLIPDIFSFSNDQIAQKLEQMGIEVESIKQFNSPDYLQLAKVVSIQPHPHD 60 Query 61 NHLYVCQVQIDKNKQLNVVTGAVNIVDPNNLNKHVIVAKKGAELLNGLIIKTKNIKGIIS 120 N L++C++QIDKNK +NVV+ A NI +P+N+NK VIVAKKG ELLNGLI+KT+NIKGIIS Sbjct 61 NKLFICELQIDKNKFINVVSNANNINNPDNINKFVIVAKKGTELLNGLIVKTQNIKGIIS 120 Query 121 DGMLCSYVDINPFSKHLIADGDDTHAIVLDNINRD-EFGDYLSFLNLDDVVFEVTLPTNR 179 +G+LCSY+DINPFS+ +I + AI++D+++ D ++ YLSFL+LDDV+F+V PTNR Sbjct 121 EGILCSYIDINPFSRQIIEKTEVADAIIIDHVSNDHDWNQYLSFLSLDDVIFDVKTPTNR 180 Query 180 SDLQSLIFLAKELAAVLKRPVFLEQKTTMTLREFYRFPLNLRNRAQANFFGGLFLRDVAI 239 +DL SLIFLAKEL +LK FL+QK+++ +F++FPLNL+N+ +AN+FGGLFLR + Sbjct 181 ADLHSLIFLAKELGVLLKTKTFLKQKSSVVNHDFFKFPLNLKNKLKANYFGGLFLRQINQ 240 Query 240 TSSPWTTKGLLINQELRPVNCFVDQANMVTVYTGQPIHCHDADKIHGSVELKLATQLETM 299 SSPWT KGLLINQ ++PVN +VD+AN+VTV+T QPIHCHDAD+I G++ELK AT ET Sbjct 241 HSSPWTVKGLLINQMIKPVNYYVDKANLVTVFTAQPIHCHDADRIVGNIELKQATHNETF 300 Query 300 LALDNKEYEIKPGDLVVADEQGTIAIVGIIGSKRTMVDNTTNNIFFEVVNYNHERIKQTA 359 + LD+K+YEI+PGD+VV DE+G IA+VGIIGSKRTMV TT NIFFEVVN N E IKQTA Sbjct 301 VGLDDKQYEIEPGDIVVCDEKGIIALVGIIGSKRTMVQPTTTNIFFEVVNCNSETIKQTA 360 Query 360 QRLGVANFASRLMSKPISLQATENCLNYLQNNFLNPESIGKISKFSSTIKAPAFNRKIYL 419 +R + NFAS+ M KPISL AT+NCLNYLQN+ L ++IGKIS FSS++K F++K+ + Sbjct 361 KRFLINNFASKFMVKPISLLATDNCLNYLQNSLLTTDNIGKISHFSSSLKVEPFSKKLTV 420 Query 420 NFNQLRELIGVTKKQLNDHMIRNYLTSLGFKMENQIARAPAYRQDITVWQDISEELLKIL 479 NF+++R+LIG+ KK+L D I+ L+ LGFK++NQ+ + P+YRQDI WQDISEE++K++ Sbjct 421 NFHKIRQLIGIEKKELTDQTIKKSLSQLGFKVDNQLLKIPSYRQDINTWQDISEEIVKLI 480 Query 480 DLNKIKEDEILSSTKLEKHEKLNAYDALQKLRTKLQTLGFHNVITYQLISPERARNFNLF 539 D+NK+K I SS EK N ++AL KLR KLQTLGFHNVITYQL + A+ FNLF Sbjct 481 DINKLKPIGITSSFNFEKSSYFNTFNALTKLRKKLQTLGFHNVITYQLTDQKSAKTFNLF 540 Query 540 GLSNLWEIKNPLSNERSVLRVGLIDSLLRVIQKNAAYKNKLGNIFEFSFVKTKDSNQLHI 599 L N IKNP+S SV+RV LIDSLL+V++ N YKN+L NIFEFSF+KT+++++LH+ Sbjct 541 NLENFITIKNPVSQNHSVMRVSLIDSLLKVLKTNNNYKNELVNIFEFSFIKTQNNSELHL 600 Query 600 AALWLEKMFGSTYQKDQGVSVDIPAMKGLAQLIISNFGFNCDFEPITEGEYFTKNVGLKL 659 A LW+EK+F S++ QG+S D+ MKGLA+LI++N GF+CDFEP+ + +YF N LK+ Sbjct 601 AVLWVEKLFTSSFNPMQGISNDVFTMKGLAKLIVANLGFSCDFEPLDDSDYFVNNQSLKI 660 Query 660 VVFNEQIGYVGLIKDELLAPYDLKGRPVYGLEINLDRLLNSLNRLERSYTPISKLQDVFK 719 VVFNEQIG++GLIK+ LL YDL +P+Y LEINLDR+L+SLNR+E++Y SKLQ V K Sbjct 661 VVFNEQIGFIGLIKESLLNNYDLNNKPIYCLEINLDRMLSSLNRIEKNYLGYSKLQPVCK 720 Query 720 DITFSFPRDESHFETFVKAIKKLQTIFKWELISVFDTEKDGVPITKYTVRYYLKNFTNTP 779 D+TFSF SHF+ F IK++ I W+LISVF+T ++ ITKYTVRY+LKN N P Sbjct 721 DLTFSFTNPASHFDQFANMIKRITGIESWKLISVFETMQNNQLITKYTVRYFLKNDANKP 780 Query 780 LTLEQIKAVETQLKQQCELAKIALDL 805 LT + I+ + LK QCE KI LD+ Sbjct 781 LTNQTIELITNNLKLQCEKLKIKLDI 806 Lambda K H a alpha 0.320 0.137 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 100454679 Query= gi|13507846|ref|NP_109795.1| hypothetical protein MPN107 [Mycoplasma pneumoniae M129] Length=251 ***** No hits found ***** Lambda K H a alpha 0.319 0.136 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26172111 Query= gi|13507847|ref|NP_109796.1| hypothetical protein MPN108 [Mycoplasma pneumoniae M129] Length=404 ***** No hits found ***** Lambda K H a alpha 0.319 0.137 0.414 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 46838892 Query= gi|13507848|ref|NP_109797.1| C09_orf165 Protein [Mycoplasma pneumoniae M129] Length=165 ***** No hits found ***** Lambda K H a alpha 0.318 0.136 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14640253 Query= gi|13507849|ref|NP_109798.1| hypothetical protein MPN110 [Mycoplasma pneumoniae M129] Length=718 ***** No hits found ***** Lambda K H a alpha 0.318 0.135 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 88881701 Query= gi|13507850|ref|NP_109799.1| hypothetical protein MPN111 [Mycoplasma pneumoniae M129] Length=422 ***** No hits found ***** Lambda K H a alpha 0.317 0.135 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 49068353 Query= gi|13507851|ref|NP_109800.1| permease [Mycoplasma pneumoniae M129] Length=130 ***** No hits found ***** Lambda K H a alpha 0.330 0.145 0.466 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10101945 Query= gi|13507852|ref|NP_109801.1| Similarity to G3P transporters [Mycoplasma pneumoniae M129] Length=223 ***** No hits found ***** Lambda K H a alpha 0.326 0.138 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22386156 Query= gi|13507853|ref|NP_109802.1| Acyltransferase [Mycoplasma pneumoniae M129] Length=600 ***** No hits found ***** Lambda K H a alpha 0.319 0.132 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 72911980 Query= gi|13507854|ref|NP_109803.1| translation initiation factor IF3 [Mycoplasma pneumoniae M129] Length=201 Score E Sequences producing significant alignments: (Bits) Value gi|12045048|ref|NP_072858.1| translation initiation factor 3 (inf... 288 2e-102 >gi|12045048|ref|NP_072858.1| translation initiation factor 3 (infC) [Mycoplasma genitalium G-37] Length=181 Score = 288 bits (737), Expect = 2e-102, Method: Compositional matrix adjust. Identities = 139/183 (76%), Positives = 161/183 (88%), Gaps = 2/183 (1%) Query 19 LAQNIKQGSRREREQKPLINDKIGFNEFILIDENGSNLGTVRRTDALKMAEEKQLDLVLI 78 +AQN K S++E QKPL+N++I FN+F LIDEN +NLG V+ +ALK+A+EKQLDLVLI Sbjct 1 MAQNAKHPSKKE--QKPLVNEQIAFNQFTLIDENSTNLGIVKMENALKLAQEKQLDLVLI 58 Query 79 GSNPAKPIVKLLDFGRYTYDLKRKKRQSKKNQTIIQIKEVVVKPTIAKHDLEFKAKQTTG 138 NP KPIVKLLDFGRYTYDLKRKKRQ+KKNQTIIQ KEVVVKPTIAKHDLEF+AKQ+ Sbjct 59 APNPTKPIVKLLDFGRYTYDLKRKKRQAKKNQTIIQTKEVVVKPTIAKHDLEFRAKQSKN 118 Query 139 WAEKGYHVKFVVRAFGRVSTRIELIEKVFNDFYLLVEPAVEVQKPLTASSKTMYSALLVP 198 W EKG+HVKF+VRAFGRVSTRIELIEKVF+DFY LV+ VE+QKPLTASSKTMY+ALLVP Sbjct 119 WIEKGHHVKFIVRAFGRVSTRIELIEKVFDDFYQLVKDVVEIQKPLTASSKTMYAALLVP 178 Query 199 RKK 201 K+ Sbjct 179 LKR 181 Lambda K H a alpha 0.319 0.136 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 19437975 Query= gi|13507855|ref|NP_109804.1| ribosomal protein L35 [Mycoplasma pneumoniae M129] Length=59 Score E Sequences producing significant alignments: (Bits) Value gi|12045049|ref|NP_072859.1| ribosomal protein L35 (rpL35) [Mycop... 99.8 6e-32 >gi|12045049|ref|NP_072859.1| ribosomal protein L35 (rpL35) [Mycoplasma genitalium G-37] Length=59 Score = 99.8 bits (247), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 51/59 (86%), Positives = 53/59 (90%), Gaps = 0/59 (0%) Query 1 MKVKSAAKKRFKLTKSGQIKRKHAYTSHLAPHKTTKQKRHLRKQGTVSASDFKRIGNLI 59 MK KSAA KRFKLTKSGQIKRKHAYTSHLAPHK+TKQKRHLRKQ TVS S+ KRIG LI Sbjct 1 MKTKSAAVKRFKLTKSGQIKRKHAYTSHLAPHKSTKQKRHLRKQATVSNSELKRIGILI 59 Lambda K H a alpha 0.317 0.126 0.344 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4331907 Query= gi|13507856|ref|NP_109805.1| ribosomal protein L20 [Mycoplasma pneumoniae M129] Length=127 Score E Sequences producing significant alignments: (Bits) Value gi|12045050|ref|NP_072860.1| ribosomal protein L20 (rpL20) [Mycop... 187 1e-64 >gi|12045050|ref|NP_072860.1| ribosomal protein L20 (rpL20) [Mycoplasma genitalium G-37] Length=124 Score = 187 bits (474), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 94/123 (76%), Positives = 104/123 (85%), Gaps = 2/123 (2%) Query 1 MRIKGGKQTRVRRKKWLKQASGSFGTRHASYKVAKQTVIQAAKYAYRDRRNKKRDFRSLW 60 MR+KG TR+RRKKWLKQASGSFGTR AS+K AKQTVIQA+KYAYRDRR KKR+FRSLW Sbjct 1 MRVKGTNTTRIRRKKWLKQASGSFGTRKASFKAAKQTVIQASKYAYRDRRQKKREFRSLW 60 Query 61 ILRLNAALREQGMTYSVFINLLKKHNIEINRKVLSELAIKEPSKFNLIVQKVK--SEQPK 118 ILRLNAALR QGMTYSVFIN LKK I INRKVLSELAIKEP+K NLI+ +K + +P Sbjct 61 ILRLNAALRAQGMTYSVFINELKKAKIVINRKVLSELAIKEPNKLNLIINTIKKPTNKPT 120 Query 119 AAK 121 AK Sbjct 121 VAK 123 Lambda K H a alpha 0.319 0.131 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9662730 Query= gi|13507857|ref|NP_109806.1| Similarity with Ribonuclease HII [Mycoplasma pneumoniae M129] Length=236 Score E Sequences producing significant alignments: (Bits) Value gi|12045051|ref|NP_072861.1| hypothetical protein MG199 [Mycoplas... 156 3e-50 >gi|12045051|ref|NP_072861.1| hypothetical protein MG199 [Mycoplasma genitalium G-37] Length=167 Score = 156 bits (395), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 80/167 (48%), Positives = 112/167 (67%), Gaps = 2/167 (1%) Query 70 DQVTLSVDAKTYNQLVQSFKNVNVMLTFLHCKVYHQLLQQNKLTAQQCDISIDEFANVKL 129 D T+++D K YN L +S KN N++LT LHC++Y +LL++N+L Q ISID+FAN +L Sbjct 2 DHHTITLDPKQYNDLTKSLKNTNLLLTNLHCQLYQKLLEKNQLLRQTVTISIDQFANQEL 61 Query 130 FTQYTQKLTSLQNELKELVIPNHFLIRGESYSKVIAAASILARAAFIAQMEQLSHQYGVQ 189 F Y KLT+ + K +++P+ FLI GE+ S VIAAASILAR +FI Q++ L+ + Sbjct 62 FVNYLNKLTNFTD--KTVLLPDQFLINGETKSLVIAAASILARDSFINQLQLLNQKVNYD 119 Query 190 FPKGSAHGIVEALHLLKTKRQFHKFAQYSAVCKTTFKNVASFLKQLA 236 PKGS+HGI +AL L +R F + Q+ V K FKNV FL+QL Sbjct 120 LPKGSSHGIEQALLFLNQQRGFSQIEQFKQVAKLNFKNVTKFLQQLV 166 Lambda K H a alpha 0.321 0.132 0.368 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24026856 Query= gi|13507858|ref|NP_109807.1| contains j-domain of DnaJ; and a domain common to cytadherence proteins [Mycoplasma pneumoniae M129] Length=910 Score E Sequences producing significant alignments: (Bits) Value gi|12045052|ref|NP_072862.1| dnaJ-like protein [Mycoplasma genita... 290 8e-89 gi|12044869|ref|NP_072679.1| heat shock protein (dnaJ) [Mycoplasm... 100 3e-24 >gi|12045052|ref|NP_072862.1| dnaJ-like protein [Mycoplasma genitalium G-37] Length=601 Score = 290 bits (741), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 146/300 (49%), Positives = 204/300 (68%), Gaps = 13/300 (4%) Query 614 TFEAAVDFLK-----EAAKIEAQLPLVPTVPEQIDGTDPSLLTQWDEYLEKTRKLFHKLF 668 T+E VD+L AK + +L + IDGT+P LL Q + ++ +LF KLF Sbjct 307 TYEQVVDYLNSQATPNLAKTDGEL-------QTIDGTNPLLLEQCKKIKKQAEQLFKKLF 359 Query 669 LTEQLPFIVKTDQFEIVDPNLDEHNVNLIYTEHVPQICFLNEQLKEIRYTRKLVDPQTQV 728 L +QLPFI + + E + DE+NVNL+Y E VP+I F+N+Q KE++YTR++ D T Sbjct 360 LKKQLPFITQPEVVEESKTSFDENNVNLVYFEKVPEILFINQQPKEVKYTRQVFDGLTNK 419 Query 729 TTTESITLEVQLSHKSQTEAIAIFKGFGHDYGSGCGDLKVVLKVIPSVFFQLQADGLHTA 788 TT+E+ITLE+QL + AIFKGFG+D+G GCGDLK+V + I S FFQ+ DGLH+A Sbjct 420 TTSETITLEIQLLQTPKETVSAIFKGFGNDHGKGCGDLKIVFEKIKSPFFQVNEDGLHSA 479 Query 789 ALVDPLVAYNGGLIDVFGPVNSFKVDIEGGIANNDLIEFNQLGVLRTKTKRGSLYVHLYY 848 ++DPLVAYNGG+IDVFGP +F+V ++G I N +++F +LG+ +TK ++G L+VHLYY Sbjct 480 CIIDPLVAYNGGIIDVFGPYTNFQVKVDGEIDINAIMKFEKLGIAKTK-RKGDLFVHLYY 538 Query 849 SSVAKKGTKTNCQVQQFFDLVHVEYKLLNYNLKQLHNYHSALTAQKKTLDRKSYQCLAVE 908 SSV KK TN QVQQF +L+ EY+LL N+K L + + L KK LD++SYQ L+ E Sbjct 539 SSVPKKKLTTNPQVQQFLELLQAEYELLQDNIKSLKYFKNNLVIPKKPLDQQSYQYLSQE 598 Score = 237 bits (604), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 148/337 (44%), Positives = 179/337 (53%), Gaps = 92/337 (27%) Query 1 MAEAKRDYYEVLGLSRDADDNDIKKAFRKLAKKYHPDRNKAPDAAQIFAEINEANDVLSN 60 MAE KRDYYEVLG++ DAD ++IKKAFRKLAKKYHPDRN APDAA+IFAEINEANDVLSN Sbjct 1 MAEQKRDYYEVLGITPDADQSEIKKAFRKLAKKYHPDRNNAPDAAKIFAEINEANDVLSN 60 Query 61 PKKRANYDKYGHDGVDNEGGFAFQADVFDSFFEEIEKSGAFDNLSESNTKKKEKTKTKKK 120 PKKRANYDKYG DGVD E F FQADVF SFFEEI KSG F+N T ++K K K+ Sbjct 61 PKKRANYDKYGFDGVDGEPAFNFQADVFQSFFEEIAKSGVFNN----QTNPEQKEKKKRY 116 Query 121 GWFWGKSKQEESTSDTTEYADVDAGLEDYPPQSDYPDDIPDVDARIEEVDQSAYADDIPD 180 WF K KQE+ + V+ I++V Q+ + PD Sbjct 117 HWFSKKPKQEQPEINLDHV----------------------VEQTIKKVQQNQNQNKDPD 154 Query 181 VDAGMDWEQNAEVANSASEIIPDVDAGLADEFNTSSAAPQASDWEAMIGNPEYGYFDAAG 240 E ++V + ASDWEA++G+ YGYFD G Sbjct 155 -------ELRSKVPGEVT----------------------ASDWEALVGDTRYGYFDETG 185 Query 241 EWNWKGFFDEAGQWVWLEETEPSSVSNDETTTDSDAVTAATTVEETDQDSWTANSAPEPV 300 +W+WKG+FDE G+WVW EP D+ T+ +VE PEP Sbjct 186 DWSWKGYFDEQGKWVW---NEP-----------VDSETSEVSVE------------PEP- 218 Query 301 DVETPV-------ELQPETEPEPIITLSSEPVEAPAS 330 TPV E QPE EP + S P P + Sbjct 219 ---TPVAPEASFEEAQPEINAEPEASFESTPTPEPVA 252 >gi|12044869|ref|NP_072679.1| heat shock protein (dnaJ) [Mycoplasma genitalium G-37] Length=389 Score = 100 bits (248), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 11/104 (11%) Query 1 MAEAKRDYYEVLGLSRDADDNDIKKAFRKLAKKYHPDRNKAPDAA------QIFAEINEA 54 MA KRDYYEVLG+S++A DIK+AFRKLA +YHPDR+KA + + F E+NEA Sbjct 1 MAAGKRDYYEVLGISKNASSQDIKRAFRKLAMQYHPDRHKAENETTQKQNEEKFKEVNEA 60 Query 55 NDVLSNPKKRANYDKYGHDGVD----NEGGFAFQADVFDSFFEE 94 +VLS+ +KR YD++GH+G++ +E GF D+F+S F E Sbjct 61 YEVLSDEEKRKLYDQFGHEGLNASGFHEAGFN-PFDIFNSVFGE 103 Lambda K H a alpha 0.308 0.127 0.359 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 114422883 Query= gi|13507859|ref|NP_109808.1| heat shock protein GrpE [Mycoplasma pneumoniae M129] Length=217 Score E Sequences producing significant alignments: (Bits) Value gi|12045053|ref|NP_072863.1| heat shock protein (grpE) [Mycoplasm... 314 6e-112 >gi|12045053|ref|NP_072863.1| heat shock protein (grpE) [Mycoplasma genitalium G-37] Length=217 Score = 314 bits (805), Expect = 6e-112, Method: Compositional matrix adjust. Identities = 157/215 (73%), Positives = 183/215 (85%), Gaps = 0/215 (0%) Query 1 MSENSLTITEILSSIRTLLVKHNKAKVTQIEKELLQAVAELEKKFKQQVQNFNELQQKIP 60 M E S TI E+L++IRTL+VK+NKAKV+ IEKELL V+EL+KKFKQQ+ NFNELQQKIP Sbjct 1 MCEKSQTIKELLNAIRTLVVKNNKAKVSMIEKELLAFVSELDKKFKQQLNNFNELQQKIP 60 Query 61 NLQKVNEEFRLKVEKIQEEAQKKIQEKVAELTIKSKEELENAKKYVIEKSIDQPLIIIDQ 120 LQK NEEF LK E++Q EAQ +IQ K+ EL +K+K+ELE AKKY I K++DQPL IIDQ Sbjct 61 LLQKANEEFALKFERMQREAQNQIQAKLDELNLKNKKELEQAKKYAIAKTLDQPLNIIDQ 120 Query 121 FEIALSYAQKDPQVKNYTTGFNMVLDAFSRWLEGFGVTKIAIEPGAQFDEKVMAALEVVP 180 FEIALSYAQKDPQVKNYTTGF MVLDAFSRWLE GVTKI IEPG +FDEK+M+ALE+V Sbjct 121 FEIALSYAQKDPQVKNYTTGFTMVLDAFSRWLEANGVTKIKIEPGMEFDEKIMSALELVD 180 Query 181 SDQPANTVVKVSKSGYKLHDKVIRFASVVVSQGNK 215 S+ N VV+VSKSGYKL+DKVIRFASV VS+GNK Sbjct 181 SNLAKNKVVRVSKSGYKLYDKVIRFASVFVSKGNK 215 Lambda K H a alpha 0.312 0.128 0.332 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21525150 Query= gi|13507860|ref|NP_109809.1| hypothetical protein MPN121 [Mycoplasma pneumoniae M129] Length=121 Score E Sequences producing significant alignments: (Bits) Value gi|12045054|ref|NP_072864.1| hypothetical protein MG202 [Mycoplas... 191 4e-66 >gi|12045054|ref|NP_072864.1| hypothetical protein MG202 [Mycoplasma genitalium G-37] Length=122 Score = 191 bits (484), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 97/122 (80%), Positives = 109/122 (89%), Gaps = 1/122 (1%) Query 1 MSTNKRRTIQIEITEEHFKDLEKALEALKGTQLPFSTTVEQFVELILSNYVATSNKISNL 60 MS KRRTIQI I+E+H+++L+KALE LKGTQLPFSTTVEQFVELILSNYVATSNKIS+L Sbjct 1 MSEQKRRTIQIAISEDHYEELQKALELLKGTQLPFSTTVEQFVELILSNYVATSNKISSL 60 Query 61 AESGFDVASIQQELEKIGSAAGADDALKSFLDELLKTSQKSFSNT-KDGKKNDDDNNSSS 119 A+SGFDVAS+QQELEKIG+ +G DD LK FL ELLKTS+ FSN KDGKKNDDDNNSSS Sbjct 61 AKSGFDVASLQQELEKIGNLSGVDDNLKGFLSELLKTSRNGFSNPNKDGKKNDDDNNSSS 120 Query 120 KS 121 KS Sbjct 121 KS 122 Lambda K H a alpha 0.305 0.122 0.307 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8784300 Query= gi|13507861|ref|NP_109810.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129] Length=635 Score E Sequences producing significant alignments: (Bits) Value gi|12045055|ref|NP_072865.1| topoisomerase IV subunit B (parE) [M... 937 0.0 gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (gyrB) [Mycopla... 517 6e-179 >gi|12045055|ref|NP_072865.1| topoisomerase IV subunit B (parE) [Mycoplasma genitalium G-37] Length=633 Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/636 (70%), Positives = 534/636 (84%), Gaps = 4/636 (1%) Query 1 MKNNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAV 60 MK+NYS NIKILKGLDAVKKRPGMYIGSTDS+G HH+LWEIL N VDEVL+G+A I V Sbjct 1 MKSNYSATNIKILKGLDAVKKRPGMYIGSTDSKGLHHMLWEILANSVDEVLAGYATNITV 60 Query 61 VLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGAS 120 L N ITVSD+GRGIP+E H DS ISTIDTVFT+LHAGGKFD+ SYK+AGGLHGVGAS Sbjct 61 TLDLNNTITVSDDGRGIPYEIHQDSNISTIDTVFTFLHAGGKFDDQSYKLAGGLHGVGAS 120 Query 121 VVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKK 180 VVNALSD L+VTVKR G++Y+SVY+ GGKI QKA IG+ HGT+V+F DPKVFKK Sbjct 121 VVNALSDHLEVTVKRNGQIYQSVYQAGGKIIQKAKKIGDTT--SHGTTVSFHADPKVFKK 178 Query 181 IHFDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFTEAGISQYLDELNADSKQIAQ 240 FDS +I++RLKEL+FLF KL+LTF D+ + + VFF+ +G+ Q+LDE+N + + Q Sbjct 179 AQFDSNIIKSRLKELSFLFAKLKLTFTDQK-TNKTTVFFSTSGLVQFLDEINNTVETLGQ 237 Query 241 KIFVSGTEDDIELEAVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSVGDVINNYCRK 300 K + G +D IE+E VFQF + E +LSFANSI+T EGGSHE F ++ DVIN+YCRK Sbjct 238 KTLIKGEKDGIEVEVVFQFNQSDQETILSFANSIKTFEGGSHENGFCLAISDVINSYCRK 297 Query 301 YNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQKHF 360 YN LKE+DKNF+ SEIR+GLN IIKVNLPEK IAFEGQTKSKLFSKEVK VV +L Q+H+ Sbjct 298 YNLLKEKDKNFQLSEIRQGLNAIIKVNLPEKNIAFEGQTKSKLFSKEVKNVVYELVQQHY 357 Query 361 FQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKLAPAQSKKVA 420 FQFLERN+ DAKLI++KL RK+++++KQQR++KK+LS+P+ E+ILFGKLAP Q+KK + Sbjct 358 FQFLERNNNDAKLIIDKLLNARKIKEQIKQQRELKKSLSSPQKEKILFGKLAPCQTKKTS 417 Query 421 ERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEELLTLIFCIG 480 E+ELF+VEGDSAGGTAKMGRDR QAILPLRGKVLNVEKINNKKEAI NEE+LTLIFCIG Sbjct 418 EKELFIVEGDSAGGTAKMGRDRIFQAILPLRGKVLNVEKINNKKEAITNEEILTLIFCIG 477 Query 481 TGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALPPLYK 540 TGI NF I+D KY KIIIMTDADNDGAHIQILLLTFFYRYM+PLIE GH+YLALPPLYK Sbjct 478 TGILTNFNIKDLKYGKIIIMTDADNDGAHIQILLLTFFYRYMQPLIELGHVYLALPPLYK 537 Query 541 FEGRDKKA-RYLWTEQELEQYRAKHSHFNVQRYKGLGEMNADQLWETTMNPMTRKLIQVK 599 E +D+K +YLW++ ELE + K ++F +QRYKGLGEMNADQLW+TTMNP TRKL+QVK Sbjct 538 LETKDRKTVKYLWSDLELESVKLKLNNFTLQRYKGLGEMNADQLWDTTMNPTTRKLVQVK 597 Query 600 LDNFIQAEKQINVFMGDKTELRKSWIEANINFSSEN 635 LD+ I AEKQIN+FMG+K++LRK WIEANINFS EN Sbjct 598 LDDLINAEKQINIFMGEKSDLRKHWIEANINFSVEN 633 >gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (gyrB) [Mycoplasma genitalium G-37] Length=650 Score = 517 bits (1332), Expect = 6e-179, Method: Compositional matrix adjust. Identities = 277/640 (43%), Positives = 404/640 (63%), Gaps = 20/640 (3%) Query 3 NNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAVVL 62 N Y ++IK+L+GL+AV+KRPGMYIGST G HH++WEI+DN +DE + GFA+ + + L Sbjct 8 NIYDSSSIKVLEGLEAVRKRPGMYIGSTGEEGLHHMIWEIVDNSIDEAMGGFASFVKLTL 67 Query 63 HAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGASVV 122 V D+GRGIP + H + ST++TVFT LHAGGKFDNDSYK++GGLHGVGASVV Sbjct 68 EDNFVTRVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGGLHGVGASVV 127 Query 123 NALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKKIH 182 NALS +V V RQ K Y + +GGK+ GN++ EHGT V F PD V +K Sbjct 128 NALSSSFKVWVFRQNKKYFLSFSDGGKVIGDLVQEGNSE-KEHGTIVEFVPDFSVMEKSD 186 Query 183 FDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFT-EAGISQYLDELN--------- 232 + +I +RL++LAFL K +++ FVD + + + G+ +Y+ LN Sbjct 187 YKQTVIVSRLQQLAFLNKGIRIDFVDNRKQNPQSFSWKYDGGLVEYIHHLNNEKEPLFNE 246 Query 233 --ADSKQIAQKIFVSGTEDDIELEAVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSV 290 AD K K +++E FQ+ ++ + SF N+I T+EGG+H FR ++ Sbjct 247 VIADEKTETVKAVNRDENYTVKVEVAFQYNKTYNQSIFSFCNNINTTEGGTHVEGFRNAL 306 Query 291 GDVINNYCRKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKA 350 +IN + + FLK+ D+ ++ EGL II + P +EGQTK KL + EV+ Sbjct 307 VKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNP--QYEGQTKKKLGNTEVRP 364 Query 351 VVQKLTQKHFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGK 410 +V + + F +F+ N +A I+ K ++ R+ ++ R++ + S P L GK Sbjct 365 LVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKS-PFDSGSLPGK 423 Query 411 LAPAQSKKVAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNE 470 LA ++ + EL++VEGDSAGGTAK GRDR+ QAILPLRGK+LNVEK +N ++ NN Sbjct 424 LADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK-SNFEQIFNNA 482 Query 471 ELLTLIFCIGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGH 530 E+ L+ IG GI +F + +Y KI+IMTDAD DGAHI+ LLLTFF+R+M PL+E+G+ Sbjct 483 EISALVMAIGCGIKPDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGN 542 Query 531 IYLALPPLYKFEGRDKKARYLWTEQELEQYRAKHSH--FNVQRYKGLGEMNADQLWETTM 588 I++A PPLYK K Y+ T+ +LEQ+++++ + F +QRYKGLGEM+A QLWETTM Sbjct 543 IFIAQPPLYKV-SYSHKDLYMHTDVQLEQWKSQNPNVKFGLQRYKGLGEMDALQLWETTM 601 Query 589 NPMTRKLIQVKLDNFIQAEKQINVFMGDKTELRKSWIEAN 628 +P R L++V +++ A+K ++ MGD+ R+ +IE N Sbjct 602 DPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEKN 641 Lambda K H a alpha 0.318 0.136 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 77782055 Query= gi|13507862|ref|NP_109811.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129] Length=789 Score E Sequences producing significant alignments: (Bits) Value gi|12045056|ref|NP_072866.1| topoisomerase IV, subunit A (parC) [... 1053 0.0 gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (gyrA) [Mycopla... 377 2e-120 >gi|12045056|ref|NP_072866.1| topoisomerase IV, subunit A (parC) [Mycoplasma genitalium G-37] Length=781 Score = 1053 bits (2722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/787 (66%), Positives = 632/787 (80%), Gaps = 8/787 (1%) Query 1 MEKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPT 60 M++ L +AIE+VFA SFSKYAKYIIQDRALPDLRDGLKPVQRRILYGM+QMGLKPT Sbjct 1 MDQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPT 60 Query 61 SPYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAM 120 +PYKKSARAVGEIMGKYHPHGD+SIYDAI+RMSQ+WKNN TT+SIHGNNGS+DGDNAAAM Sbjct 61 TPYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAM 120 Query 121 RYTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYAT 180 RYTE RLS YGFELLKDI+K+LV F+NNFDDSE EP+VLPTLLPNLFING SGIAAGYAT Sbjct 121 RYTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYAT 180 Query 181 NIAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKF 240 NIAPHN ELLD L RI+ P+C+LK ILKIVKGPDFPTGG VYFE+ L++IYQ GKGKF Sbjct 181 NIAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKF 240 Query 241 VIQAKYETNTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIR 300 +IQAKYE N NQI IT+IPYET+KANIVKQIEE+I DNKLSA+ESVIDSSDR+GIR Sbjct 241 IIQAKYEVNKNL--NQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIR 298 Query 301 IIINHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELI 360 III HKDFL A+KIMAFLFKHTQLQVNFNLNNTVIANR P+++GLL+Y D FL F HELI Sbjct 299 IIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELI 358 Query 361 INSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAE 420 IN AKY+L LA+KRLEII GLIKA+S+ID+II+LIR A DK DA+ KLID + FT NQAE Sbjct 359 INKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDNFKFTFNQAE 418 Query 421 AIVSLRLYQLTNTDIKVLFAEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQP 480 AIVSLRLYQLTNTDI L EQ ELE+T+ ++E+LIA +ARN+LL+ QF YKKQF+Q Sbjct 419 AIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEGYKKQFHQQ 478 Query 481 RRAQIVGLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLAKHLVEFKSEQDQLIFG 540 RR+QI G I ++KV++S+ IE+K G+LI+ G Y KFE QL K +FKSE D +IF Sbjct 479 RRSQICGFINQKKVEESELIENKTYGVLITKAGNYHKFESNQLLKSTTDFKSESDTIIFA 538 Query 541 GVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDK 600 + N+D F+VTSLGNII +P+YK N+K K+ L++KKPIL+E E +V G +N Sbjct 539 QTIANTDQIFIVTSLGNIINIPVYKLAFNSKNKLASLVSKKPILLEYETIVFVGTMNS-- 596 Query 601 MEQQLLVLTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLV 660 + Q +LVLTS+ GMVKR++L+K +N K +K++ C++LR++D LV+AF+Q + KL+CLV Sbjct 597 VNQPILVLTSKLGMVKRIDLTK-LNIKPLKATLCISLRDKDHLVSAFLQQ--DDKLICLV 653 Query 661 SSSNSFATFLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDGGVYNFE 720 S N + F EIP+IS+KG+GVKG+KLK E++++F + + N+ LV+I SDG V N + Sbjct 654 SDHNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFVVAFEANEPLVMICSDGSVINLK 713 Query 721 VVELAVASRMSVGKKLIPKTKTPVSCFAANKHSEIIGHRGKNGSDLFTLNELNRLPKSTV 780 EL V SRM+ KKL P K CF+ ++++I +GKNGS L T +ELN++ K+ + Sbjct 714 QTELVVVSRMATAKKL-PVKKAINYCFSDATNTQLINFQGKNGSKLITTSELNQMSKTAI 772 Query 781 SQMRLFK 787 SQ R K Sbjct 773 SQTRFNK 779 >gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (gyrA) [Mycoplasma genitalium G-37] Length=836 Score = 377 bits (968), Expect = 2e-120, Method: Compositional matrix adjust. Identities = 229/706 (32%), Positives = 382/706 (54%), Gaps = 21/706 (3%) Query 20 SFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVGEIMGKYHP 79 SF +YA +I RALPD RDGLKPV RR+LYG Y G+ P+KKSAR VG++M K+HP Sbjct 32 SFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHDRPFKKSARIVGDVMSKFHP 91 Query 80 HGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMRYTEARLSPYGFELLKDIE 139 HGD +IYD + RM+Q + I HGN GSIDGD AA RYTEARLS ELLKDI+ Sbjct 92 HGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARLSKLAAELLKDID 151 Query 140 KQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGELLDGLSYRIE 199 K V F+ N+D E EP+VLP PNL NG+SGIA G +T+I HN+ EL+ GL I+ Sbjct 152 KDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNLSELIAGLIMLID 211 Query 200 NPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKFVIQAKYETNTAFGQNQIVI 259 NP C + +L ++KGPDFPTG + + + + + ++TGKG VI++K E ++ +V+ Sbjct 212 NPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVEIEQLQTRSALVV 271 Query 260 TEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIRIIINHKDFLSADKIMAFLF 319 TEIPY K ++++I EL+ ++S + + D S R GIR++I K + ++ LF Sbjct 272 TEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGIRLVIEVKRDTVPEVLLNQLF 331 Query 320 KHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELIINSAKYDLALANKRLEIIK 379 K T+LQV F +N + PV + + + +L ++++ K+ L +R I+ Sbjct 332 KSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDVLVRKTKFVLNKQQERYHILS 391 Query 380 GLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAEAIVSLRLYQLTNTDIKVLF 439 GL+ A IDE++ +I+++ + Q+A L K+ QA+A++ +RL L+ ++ L Sbjct 392 GLLIAALNIDEVVAIIKKSANNQEAINTLNTKFKLDEIQAKAVLDMRLRSLSVLEVNKLQ 451 Query 440 AEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIEKQKVQDSDF 499 EQKEL+ +I+ ++++A + + ++++ + + QF RR++I+ I +++ D Sbjct 452 TEQKELKDSIEFCKKVLADQKLQLKIIKEELQKINDQFGDERRSEILYDI-SEEIDDESL 510 Query 500 IEHKEVGLLISHDGIYFKFEPEQL---------AKHLVEFKSEQ-DQLIFGGVVQNSDYF 549 I+ + V + +S +G + + K L + + QL+ +SD Sbjct 511 IKVENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCST--HSDLL 568 Query 550 FMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQLLVLT 609 F T G + + ++ +T + +DE+ + +++ + + Sbjct 569 FF-TDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDER--ICSLLSVNNYDDGYFFFC 625 Query 610 SQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSFAT- 668 ++ G+VKR L++ IN ++ + D L + ++T G ++ + S+N F Sbjct 626 TKNGIVKRTSLNEFINILS-NGKRAISFDDNDTLY-SVIKTHGNDEI--FIGSTNGFVVR 681 Query 669 FLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDNDALVVINSDG 714 F ++ ++S GV GI L E V + L+ + +G Sbjct 682 FHENQLRVLSRTARGVFGISLNKGEFVNGLSTSSNGSLLLSVGQNG 727 Lambda K H a alpha 0.319 0.136 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 98243847 Query= gi|13507863|ref|NP_109812.1| protein (hrcA) homolog; similar to Swiss-Prot Accession Number P25499, from B. subtilis [Mycoplasma pneumoniae M129] Length=351 Score E Sequences producing significant alignments: (Bits) Value gi|12045057|ref|NP_072867.1| transcription repressor (hrcA) [Myco... 572 0.0 >gi|12045057|ref|NP_072867.1| transcription repressor (hrcA) [Mycoplasma genitalium G-37] Length=343 Score = 572 bits (1473), Expect = 0.0, Method: Compositional matrix adjust. Identities = 274/344 (80%), Positives = 317/344 (92%), Gaps = 3/344 (1%) Query 1 MKNLTTRQAQILKAIINEYIAYPVPVGSKLLTKKYFKNLSGGTLRNEMAVLEKEGYLKKN 60 MKNLT RQAQILKAIINEYIAY +PVGSKLLTKKYFKNLSGGTLRNEMA LEK+G+LKKN Sbjct 1 MKNLTPRQAQILKAIINEYIAYAIPVGSKLLTKKYFKNLSGGTLRNEMAALEKKGFLKKN 60 Query 61 HISSGRIPSQLGYQYYVKLLTKNDDKSNLKTRLRAIILQKHKTIDEIIELGVKFINEMVN 120 HISSGR+PSQ+GYQYYVK+L ++ ++LKTRLR++ILQ+HKTIDE+IELGVKFINE++N Sbjct 61 HISSGRVPSQIGYQYYVKVLNVSNTTNDLKTRLRSVILQQHKTIDEVIELGVKFINEIIN 120 Query 121 LPVVLTHFSSDEVLKKIDLIMLDQSCALLLLVSASGNVFKKTISYANQRQFEDIMVCVRI 180 LPVVLT+FSSDEVLKKIDLI+LD+S AL LLVSASG VFKKTISYANQRQFEDI++CVRI Sbjct 121 LPVVLTNFSSDEVLKKIDLIILDKSFALFLLVSASGKVFKKTISYANQRQFEDIVICVRI 180 Query 181 FNDRIIDTRFCDIAQHLDVLKEIIRSKVHEYQYVIDEILFKLFNFEEFQQARKQVYGIHY 240 FNDRIIDTRF +I L+VLKEIIR+KVHEYQYVIDEILFKLF+ ++ +A K++YGI Y Sbjct 181 FNDRIIDTRFSEINNQLEVLKEIIRTKVHEYQYVIDEILFKLFDLDQI-EANKKIYGIQY 239 Query 241 LAQQPEFANQERLTRILNLLEDTSVWQQMAFMNQNNQTTNITFGDKLGLEGEEVSVASTL 300 LA+QPEFANQE+LT+ILNLLEDTSVWQQMAF+NQ NQ TNI FGD+LG +E+SVASTL Sbjct 240 LAKQPEFANQEKLTKILNLLEDTSVWQQMAFINQTNQKTNIVFGDQLGF--KEISVASTL 297 Query 301 INTTNESKHQLAIVGPTRMDYQKVKALLLTLKEEIEEYDKQLHG 344 INTT+E+KHQLAIVGPTRMDYQK+KALL TLKEEIE+YDK++H Sbjct 298 INTTSEAKHQLAIVGPTRMDYQKIKALLTTLKEEIEKYDKKIHN 341 Lambda K H a alpha 0.319 0.135 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39638200 Query= gi|13507864|ref|NP_109813.1| excinuclease ABC subunit C [Mycoplasma pneumoniae M129] Length=586 Score E Sequences producing significant alignments: (Bits) Value gi|12045058|ref|NP_072868.1| excinuclease ABC subunit C (uvrC) [M... 728 0.0 >gi|12045058|ref|NP_072868.1| excinuclease ABC subunit C (uvrC) [Mycoplasma genitalium G-37] Length=597 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/558 (63%), Positives = 426/558 (76%), Gaps = 1/558 (0%) Query 11 KLKNAPHKPGCYLWKDDAGQVLYVGKAKDIFKRVHHYFNPNRSFKTRALVERIADVEYVI 70 KLK AP KPGCYLWKD G+VLYVGKA +IF RVH YF N +KT+ L +I+DV++ I Sbjct 8 KLKTAPKKPGCYLWKDSNGKVLYVGKASNIFNRVHQYFQKNNPYKTQLLSSQISDVDFFI 67 Query 71 LKNENDALNLEAKLIKQYKPRFNLVLKENNGYLYFFITASVKPTLELGRRYEFSKNKYFG 130 LK+ENDALNLEAKLI QY+PRFNLVLK+NNGYLYF+IT + KPTLEL R+Y+ K FG Sbjct 68 LKDENDALNLEAKLINQYQPRFNLVLKQNNGYLYFYITKAKKPTLELARKYQIKTTKCFG 127 Query 131 PFASSKFRLRDIYDLLLKLFPLRKCAPHERGHPCFYYQLKMCMGQCMGEDTPERYQTTVK 190 PFASSKF+LR+I+DLLLKLFPLRKCAPH++ HPCFY+Q+ +CMGQCM DT E+YQ + Sbjct 128 PFASSKFKLREIHDLLLKLFPLRKCAPHQKNHPCFYFQMGLCMGQCMQTDTKEKYQQVIS 187 Query 191 GIEQFFNHGPEQVLNHLQQQEIKASEQQNFEAARHFLDLQKAVLELVNMQQTAFIKAKQS 250 IEQFFN P V+N+L+ E KAS+ Q FE A+ FL LQKAVLEL T IK K S Sbjct 188 NIEQFFN-DPSVVINYLKAAEKKASDNQEFEKAQQFLTLQKAVLELTKTHHTTIIKQKSS 246 Query 251 HDFIGYVFEKNVLAITVFAYVDNQLIGKNQQVFELPQDDEKEVESALVTFIYHYYSTNKI 310 HDFIGYVF+ NVLAIT+F Y +L K Q VF L Q D EVESA++TFIYH+Y T + Sbjct 247 HDFIGYVFQNNVLAITIFCYEKGELTDKEQAVFTLEQTDIVEVESAIITFIYHHYKTTPL 306 Query 311 PKTLTVSLSEENLSLLANSLKINVTQPKNGEQKSILQTVIDNARYALNTKWTGFINNLNR 370 P +TVSL E NL L+++SLKI V +PKNG +K ILQTVIDNA++AL TKW F +N ++ Sbjct 307 PSKITVSLDETNLKLISDSLKIGVFKPKNGNEKLILQTVIDNAKHALATKWLKFTSNYDK 366 Query 371 AEVHQQLAQLLQVPSIQSLEIIDISFYDKDHVVGAMLRYENGKRMKALSRRYNINIDHKG 430 ++H+ LAQLL I SLEIID+SFYD++HVVG MLR+E+GK++K LSRRYNIN KG Sbjct 367 TQLHKDLAQLLNTDYIHSLEIIDVSFYDQNHVVGCMLRFEDGKKIKHLSRRYNINSLKKG 426 Query 431 DTNYMADVVYRRIISSIQTHKQLPLSDLLIVDGGIAQINTVTKVFASFPNVTQPIIIGLA 490 DTN++A +VYRRI+S++QT LP SDLLI+DGG AQI +V +VF+ F NV PIIIGL Sbjct 427 DTNHIALLVYRRILSAMQTKANLPFSDLLIIDGGKAQIKSVKQVFSLFSNVKPPIIIGLV 486 Query 491 KNTRHQTDHIVLTDNTTINIDKNTPLFAYLTTIQEEVDSFAKHNAFKRVSRARFQNPLLQ 550 KN HQTDHI+L+D I N+PLF YL TIQ EVD FAK +AF ++S + QNPLLQ Sbjct 487 KNKNHQTDHIMLSDFQVKKIAINSPLFHYLATIQTEVDGFAKRSAFNKLSNHQLQNPLLQ 546 Query 551 IEGVGRKTVQILLDNFQT 568 I GVG+ T QIL DNFQT Sbjct 547 IPGVGKITAQILFDNFQT 564 Lambda K H a alpha 0.322 0.136 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 71350419 Query= gi|13507865|ref|NP_109814.1| MG207 homolog, from M. genitalium [Mycoplasma pneumoniae M129] Length=159 Score E Sequences producing significant alignments: (Bits) Value gi|12045059|ref|NP_072869.1| hypothetical protein MG207 [Mycoplas... 214 2e-74 >gi|12045059|ref|NP_072869.1| hypothetical protein MG207 [Mycoplasma genitalium G-37] Length=167 Score = 214 bits (546), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 94/156 (60%), Positives = 125/156 (80%), Gaps = 0/156 (0%) Query 1 MTKVLVLSDTHGYNDRWLAVMKLHNPDVVIHAGDHLTTKKFMDQNATFWVAGNHDVVGEE 60 + KVLV++DTHG N RW+ + HNPDV+IHAGDH+TTK+FMDQNATFWVAGN+D +G E Sbjct 5 LIKVLVIADTHGQNQRWIELKNYHNPDVIIHAGDHMTTKQFMDQNATFWVAGNNDSIGNE 64 Query 61 IQMFELEGIQFVLMHGHQAPRHDLKQWYKMLVDQAKSYLCDVLIVGHSHIEHYETIDGIQ 120 I++F+L I FVLMHGHQAPR +LK+WY++LV +A+ Y CDVLI GHSHIE+ I+ IQ Sbjct 65 IEIFQLGQINFVLMHGHQAPRDNLKKWYQLLVLKAQQYPCDVLIFGHSHIEYTNKINMIQ 124 Query 121 VINPGSLEIPRNPRKLPTYCNLNLSQGRISDLTFHF 156 +INPGSL++PRN P+YC +++ ++DLT H+ Sbjct 125 LINPGSLQLPRNQTNTPSYCTFIVNKDELTDLTIHY 160 Lambda K H a alpha 0.323 0.139 0.442 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13770535 Query= gi|13507866|ref|NP_109815.1| hypothetical protein MPN127 [Mycoplasma pneumoniae M129] Length=180 ***** No hits found ***** Lambda K H a alpha 0.321 0.136 0.422 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 16613935 Query= gi|13507867|ref|NP_109816.1| hypothetical protein MPN128 [Mycoplasma pneumoniae M129] Length=149 ***** No hits found ***** Lambda K H a alpha 0.309 0.125 0.360 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12507582 Query= gi|13507868|ref|NP_109817.1| adhesin P1 (group 2) homolog [Mycoplasma pneumoniae M129] Length=149 ***** No hits found ***** Lambda K H a alpha 0.332 0.147 0.419 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12507582 Query= gi|13507869|ref|NP_109818.1| hypothetical protein MPN130 [Mycoplasma pneumoniae M129] Length=140 ***** No hits found ***** Lambda K H a alpha 0.312 0.129 0.349 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11381838 Query= gi|13507870|ref|NP_109819.1| hypothetical protein MPN131 [Mycoplasma pneumoniae M129] Length=221 ***** No hits found ***** Lambda K H a alpha 0.307 0.124 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22099154 Query= gi|13507871|ref|NP_109820.1| hypothetical protein MPN132 [Mycoplasma pneumoniae M129] Length=256 ***** No hits found ***** Lambda K H a alpha 0.306 0.123 0.356 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26887196 Query= gi|13507872|ref|NP_109821.1| putative lipoprotein, MG186 homolog, from M. genitalium [Mycoplasma pneumoniae M129] Length=301 Score E Sequences producing significant alignments: (Bits) Value gi|12045039|ref|NP_072849.1| lipoprotein, putative [Mycoplasma ge... 221 1e-73 >gi|12045039|ref|NP_072849.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=250 Score = 221 bits (564), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 113/288 (39%), Positives = 163/288 (57%), Gaps = 43/288 (15%) Query 1 MKGFSCSRPGYLTGLLLLAVAPILTACTRDYTTKNEFQLTTAQQAKLKPATIEYWRDGDT 60 MKGF +P + G L L ++PI TAC + N F + Q A+L+ A + +WRDGDT Sbjct 1 MKGFL--KPNFSLGALFLTLSPIATACIAEKPVNNRFNFNSEQLARLRKARVNHWRDGDT 58 Query 61 PEINYASEERRKEAEQKSKENAKKEDKKEEKKTEDSQDSSSASTQVRSSKHGLRIYGIDT 120 E+++A+ ++ +RIY IDT Sbjct 59 LEVSFANNHQKP----------------------------------------IRIYAIDT 78 Query 121 PEKHVSSKGDSTGDEKIEAEKASNYAEKLIPKGSTVWVWSLNTYSYDREVGALFFKSNPK 180 PEK V S + E EA KA+ +A+ LIP GS VW+W LN+YSYDREV A+FFK+NP Sbjct 79 PEKAVLSIQRKSEIELKEANKATEFAKSLIPIGSEVWIWPLNSYSYDREVAAVFFKTNPL 138 Query 181 QTFFQSFEVAMVEAGHAIPIAGTGLNLIADPELSADDPLSVIGLQLANAANKAYNAKINI 240 Q F+SF V MV GHA+PIAG + + +L +PL ++G++LAN N A+N + NI Sbjct 139 QLHFESFAVEMVANGHALPIAGNDFDFVFS-DLDPFNPLKIVGIELANGLNNAFNNRKNI 197 Query 241 WSHDTDGYRSLTAVYKLRGADISWTRFLDEANGYSSASAGTGASLYQL 288 +S+ + ++S+T VY+ RG D SWTR+L +N +SS G G ++Y+L Sbjct 198 FSYLENSFQSITMVYQQRGVDQSWTRYLAPSNDFSSTKLGLGLTIYEL 245 Lambda K H a alpha 0.310 0.126 0.360 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32813319 Query= gi|13507873|ref|NP_109822.1| sn-glycerol-3-phosphate transport system permease protein [Mycoplasma pneumoniae M129] Length=586 Score E Sequences producing significant alignments: (Bits) Value gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 719 0.0 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 155 2e-42 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 82.4 4e-18 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 78.6 1e-17 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 77.4 3e-17 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 72.4 3e-15 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 70.1 7e-15 gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 68.2 5e-14 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 66.2 9e-14 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 65.1 2e-13 gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 60.1 6e-12 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/584 (61%), Positives = 442/584 (76%), Gaps = 11/584 (2%) Query 9 SQSAIEFKNIVVDFGESIAIDNINLTVKKKELVTLLGPSGCGKTTSLSVIAGLIAPTSGQ 68 ++SAIE KNIVVDFGES+AIDNINL+V+K +LV+LLGPSGCGKTT+L+VIAGLI PTSGQ Sbjct 4 NKSAIELKNIVVDFGESVAIDNINLSVEKHQLVSLLGPSGCGKTTTLAVIAGLIKPTSGQ 63 Query 69 VLFNGYDVTKKPPQQRKLGLVFQNYALYPHMSVFENIVFPLYSDTSWREAIFEKNTWAQH 128 VLFNGYDVTKKPPQ+RKLGLVFQNYALYPHM+VFENIVFPLYSD SW++A+ EKN+ A H Sbjct 64 VLFNGYDVTKKPPQERKLGLVFQNYALYPHMNVFENIVFPLYSDNSWKQAVLEKNSVANH 123 Query 129 DINCLILKANGATSEELAELNRLMQQRIDEPKRMAYQINDLMVSVFQKQSELEANLKLIP 188 +INCL+L +NGA+ +E+ +LN+L I++PK++ YQINDL VSVF+ +EL ANLKLIP Sbjct 124 EINCLLLTSNGASVQEIDQLNKLFHDSIEKPKQIQYQINDLNVSVFKNLNELTANLKLIP 183 Query 189 RKKQFAIISLSKETLSQIRDVE----TKAKAALETADSAEVE-----QTIKSELKQKLSE 239 K QFAI +L+K+TL QI ++E TK K +T + VE Q IK + Sbjct 184 SKHQFAITNLNKQTLKQINELEAEFKTKWKLQKQTPIKSGVEHNAKLQAIKQHFSYEKQR 243 Query 240 IKANYHDEKANIKAYWWEMLANIKTELKTEKTAIKQTNDYAKLKELKWKIHFEPLNLKKQ 299 +K +Y K +K E L +K + + IKQ++DY KLK+LK I EP LKKQ Sbjct 244 LKKHYFKTKVELKQTLVENLKLVKKAISEQTKLIKQSSDYTKLKQLKRLIKVEPNQLKKQ 303 Query 300 YRSYFKQLKAKYSLKDGNLTESELSQIEELQKRIVSLKDFINRTAKEVAEKLEITKILHK 359 Y+ + QL YSLK LT+++L++IE+++ RIVS+K FIN+TA EVA KL ITKIL K Sbjct 304 YKVFLNQLIKNYSLKTDKLTDTQLNEIEQIKTRIVSIKQFINKTALEVANKLAITKILTK 363 Query 360 RPANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQWIRKFQQDLQITTVF 419 RP ISGGQQQRVAIARAIVRRPK+LLMDEPLSNLDAKLRVQTRQWIR+FQQ+LQITTVF Sbjct 364 RPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQITTVF 423 Query 420 VTHDQEEAMSISDTIVCMSTGKVQQIGSPSELYLKPANEFVATFLGSPEMNIVNATVKAG 479 VTHDQEEAMSISD IVCMSTGKVQQIG+PSELYLKPANEFVA FLG+PEMNI+ +VK Sbjct 424 VTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPANEFVARFLGTPEMNIIECSVKNN 483 Query 480 QLLWNENPLVKTKFDLPDGAIRVGFRYDEVTAPKNDGSPVFSGTLISVENLGKHMVGVVE 539 QL WN + LV F L + VGFRY+++ N S LI++ENLGKH+V + Sbjct 484 QLFWNNHLLVTESFKLNVEKLLVGFRYEQLVVTTNKSS--LQAKLINIENLGKHLVATIS 541 Query 540 SNGVQLNVRLELSHQFEVGNAVKFTIKPNGLHFFDPQTTQRVEV 583 L++RLEL+ +VG+++ F IK N LHFFD T QR+E+ Sbjct 542 LFDTTLSMRLELNSHLKVGDSLNFIIKANNLHFFDIDTKQRIEI 585 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 155 bits (391), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 169/594 (28%), Positives = 286/594 (48%), Gaps = 64/594 (11%) Query 7 EKSQSAIEFKNIVVDFGESIAIDNINLTVKKKELVTLLGPSGCGKTTSLSVIAGLIAPTS 66 E S IE N D G ++I +I+L +KK E +T+LGPSGCGKTT L ++AG PT Sbjct 3 EHSLIEIEGLNKTFDDG-YVSIRDISLNIKKGEFITILGPSGCGKTTLLRLLAGFEDPTY 61 Query 67 GQVLFNGYDVTKKPPQQRKLGLVFQNYALYPHMSVFENIVFPLYSD-TSWREAIFE-KNT 124 G++ NG D+ +R P +VF++ + L+S T ++ + K Sbjct 62 GKIKVNGIDIKDMAIHKR------------PFATVFQD--YALFSHLTVYKNIAYGLKVM 107 Query 125 WAQHDINCLILKANGATSEELAELNRLMQQRIDEPKRMAYQINDLMVSVFQKQSELEANL 184 W + D I K ++LA + ++++I++ ++ + + Q LE N Sbjct 108 WTKLD---EIPKLVSDYQKQLALKHLKLERKIEQLQKNNSNAQRIKKLKEKLQKLLEIN- 163 Query 185 KLIPRKKQFAIISLSKETLSQ---IRDVE--TKAKAALETADSAEVEQTIKSELKQKLSE 239 KQ I +KE L + +++E TK L EVEQ K + + + Sbjct 164 ------KQKVIEFENKEKLRREDIYKNLEQLTKEWDLLSQKKLKEVEQQ-KQAIDKSFEK 216 Query 240 IKANYHDEKANIKAYWWEMLANIK-TELKTEKTAIKQTNDYAKLKELKWKIHFEPLNLKK 298 ++ Y K W+ + I+ + + +KT +K K KE K+ E LK+ Sbjct 217 VENKYK------KDPWFFQHSEIRLKQYQKKKTELKADIKATKNKEQIQKLTKELQTLKQ 270 Query 299 QYRSY------FKQLKAKYSLKDGNLTESE---LSQIEELQKRIVSLKDFINRTAKEVAE 349 +Y + + +L Y+ KD + E L Q E +KR +S K K+V++ Sbjct 271 KYANKKAIDKEYDKLVVAYNKKDYWTSYWETYTLQQKEAFEKRYLSRKLTKAEQNKKVSD 330 Query 350 KLEITKILHKR---PANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQWI 406 +E+ + K P +SGG +QRVA+AR++V P++LL+DEPLS LDAK+R ++ + Sbjct 331 VIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQKEL 390 Query 407 RKFQQDLQITTVFVTHDQEEAMSISDTIVCMSTGKVQQIGSPSELYLKPANEFVATFLGS 466 ++ + +T + VTHDQEEA+ +SD IV M+ G + Q+G+P ++Y P E++A F+G Sbjct 391 QQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIYDSPKTEWIANFIG- 449 Query 467 PEMNIVNAT-VKAGQLLWNENPLVKTKFDLPDGAIRVGFRYDEVTAPKN-DGSPVFSGTL 524 + NI T + ++ +++T D VG +Y + P++ D P G Sbjct 450 -QANIFKGTYLGEKKIQLQSGEIIQTDV---DNNYVVGKQYKILIRPEDFDLVPENKG-F 504 Query 525 ISVENLGKHMVGVVESNGVQLN----VRLELSHQFEVGNAVKFTIKPNGLHFFD 574 +V + K+ G++ QL V LE ++ +V P +H + Sbjct 505 FNVRVIDKNYKGLLWKITTQLKDNTIVDLESVNEVDVNKTFGVLFDPIDVHLME 558 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 82.4 bits (202), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 71/120 (59%), Gaps = 1/120 (1%) Query 358 HKRPANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQWIRKFQQDLQITT 417 ++ P SGGQ+QR+AIARA++ +PK+++ DE +S LD ++ Q ++ + +T Sbjct 679 YRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTV 738 Query 418 VFVTHDQEEAMSISDTIVCMSTGKVQQIGSPSELYLKPANEFVATFL-GSPEMNIVNATV 476 +F+ HD ++ + ++ M GK+ + GS E++ P + + + + SP+++ +N + Sbjct 739 LFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSNPVHPYTRSLIKASPKLSKINVDL 798 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 78.6 bits (192), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 42/98 (43%), Positives = 63/98 (64%), Gaps = 1/98 (1%) Query 345 KEVAEKLEITKILHKRPANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQ 404 +E+AEKL+I +IL+K P +SGGQ+QRVAIARAI++ PK+LL DEP LD+ Sbjct 205 EELAEKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIIN 264 Query 405 WIRKFQQDLQITTVFVTHDQEEAMSISDTIVCMSTGKV 442 ++ + + T + VTHD I++ I+ +S GK+ Sbjct 265 LLQTINKTYKQTILMVTHDV-SLTRIANRIIKISDGKI 301 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 77.4 bits (189), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 39/115 (34%), Positives = 65/115 (57%), Gaps = 2/115 (2%) Query 352 EITKILHKRPANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQWIRKFQQ 411 E+ LH+ +SGGQQQR+ IARAI +P VLLMDEP S LD+ I++ ++ Sbjct 215 EVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKE 274 Query 412 DLQITTVFVTHDQEEAMSISDTIVCMSTGKVQQIGSPSELYLKPANEFVATFLGS 466 + T V VTH + + I+D + + G+V + G+ +++ KP + +++ Sbjct 275 --KFTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQIFTKPKQKATNSYISG 327 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 72.4 bits (176), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 38/106 (36%), Positives = 60/106 (57%), Gaps = 10/106 (9%) Query 10 QSAIEFKNIVVDFGESIA----IDNINLTVKKKELVTLLGPSGCGKTTSLSVIAGLIAPT 65 Q+ IE KN+ I + ++L +K + + +LGPSG GKTT L++I+G+ + Sbjct 230 QNIIELKNVYKYITNGITTNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRAS 289 Query 66 SGQVLFNGY------DVTKKPPQQRKLGLVFQNYALYPHMSVFENI 105 SG V+ NGY D +Q+ +G +FQ Y L P+++V ENI Sbjct 290 SGSVIVNGYNMICLNDRKLTKFRQKYVGYIFQQYGLLPNLTVRENI 335 Score = 58.9 bits (141), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 51/87 (59%), Gaps = 1/87 (1%) Query 359 KRPANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQWIRKFQQDLQITTV 418 K P +SGGQQQRV+IARA + P ++ DEP LD ++ + ++ Q T + Sbjct 366 KLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMI 425 Query 419 FVTHDQEEAMSISDTIVCMSTGKVQQI 445 VTH+ A +++D ++ ++ GK++ + Sbjct 426 IVTHNNLIA-NLADLVIYVADGKIKSL 451 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 70.1 bits (170), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 32/97 (33%), Positives = 58/97 (60%), Gaps = 1/97 (1%) Query 357 LHKRPANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQWIRKFQQDLQIT 416 L + P +SGGQ++RVAIA + P++L+ DEP + LD + + Q I+ +Q Q T Sbjct 154 LERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQLIKTAKQQ-QRT 212 Query 417 TVFVTHDQEEAMSISDTIVCMSTGKVQQIGSPSELYL 453 +TH E + ++D ++ ++ GK+ + SP E+++ Sbjct 213 VFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFM 249 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 68.2 bits (165), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 81/173 (47%), Gaps = 18/173 (10%) Query 297 KKQYRSYFKQLKAKYSLKDGNLTESELSQIEELQKRIVSLKDFINRTAKEVAEKLEITKI 356 KK Y+S K++K Y K + ++K+ + + FI + K Sbjct 159 KKTYKSKLKEIKQTYQQKIKPI---------NVEKKTLEILQFIGIN--------DAKKR 201 Query 357 LHKRPANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQWIRKFQQDLQIT 416 L P+ SGG +QR+ IA A+ P +++ DEP + LD ++ + I++ + L IT Sbjct 202 LKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLRDLLNIT 261 Query 417 TVFVTHDQEEAMSISDTIVCMSTGKVQQIGSPSELYLKPANEFVATFLGS-PE 468 +F++H+ + D + M GK+ + G E++ P + + + S PE Sbjct 262 IIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNPLHPYTWALISSIPE 314 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 66.2 bits (160), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 54/85 (64%), Gaps = 1/85 (1%) Query 358 HKRPANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQWIRKFQQDLQITT 417 HK+ +SGGQQQRVAIARA+++ PK+L DEP ++ + + Q+ ++ +D T Sbjct 183 HKKVHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTI 242 Query 418 VFVTHDQEEAMSISDTIVCMSTGKV 442 V VTH+ E+ + ++ ++ + GK+ Sbjct 243 VIVTHN-EKIVELAKRVIKIHDGKI 266 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 65.1 bits (157), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/107 (32%), Positives = 61/107 (57%), Gaps = 2/107 (2%) Query 346 EVAEKLEITKILHKRPANISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQW 405 EV + + + + P N+SGGQ+QRVAIA + P +++ DE + LD K + +Q+ Sbjct 124 EVTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQF 183 Query 406 IRKFQQDLQITTVFVTHDQEEAMSISDTIVCMSTGKVQQIGSPSELY 452 + K + + + +THD EE +D ++ M+ GK+ + G P E++ Sbjct 184 MVKLAKQGK-CVISITHDMEEVTK-ADKVLVMNEGKLIKQGKPVEVF 228 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 60.1 bits (144), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 0/75 (0%) Query 363 NISGGQQQRVAIARAIVRRPKVLLMDEPLSNLDAKLRVQTRQWIRKFQQDLQITTVFVTH 422 ++S GQ+QRV IA+ + PK+LL+DEP + LD + I F + +IT VFVTH Sbjct 146 DLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDLITDFVKREKITLVFVTH 205 Query 423 DQEEAMSISDTIVCM 437 D + A+ S I+ + Sbjct 206 DIDLALKYSTRIIAL 220 Lambda K H a alpha 0.315 0.131 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 71350419 Query= gi|13507874|ref|NP_109823.1| sn-glycerol-3-phosphate transport system permease protein [Mycoplasma pneumoniae M129] Length=329 Score E Sequences producing significant alignments: (Bits) Value gi|12045041|ref|NP_072851.1| ABC transporter, permease protein [M... 446 2e-160 >gi|12045041|ref|NP_072851.1| ABC transporter, permease protein [Mycoplasma genitalium G-37] Length=329 Score = 446 bits (1147), Expect = 2e-160, Method: Compositional matrix adjust. Identities = 246/328 (75%), Positives = 286/328 (87%), Gaps = 0/328 (0%) Query 1 MFKWLLKHRSKPTPLELGIFDQKVSFWKPFLLFCPALLTTFLFTLVPFFLTLQKGFSHNE 60 MFKWLLKH ++P L+LG+ DQ + FWKPFLLF PALLTT LFT++PFFL+LQKGFS N Sbjct 1 MFKWLLKHHNQPHSLQLGLLDQPLPFWKPFLLFLPALLTTILFTIIPFFLSLQKGFSANS 60 Query 61 DIYRVDSQQFGFQTFANLFSESNFILGLRNSFLYSIISLPLTIVLAIIISSAIVFVYRKL 120 D+Y + SQ F +TF +LFSESNF+LGLRNSFLYS+ISLP +I++AI+I+SAIVFVY+KL Sbjct 61 DLYDLSSQSFSLRTFQDLFSESNFVLGLRNSFLYSLISLPFSIIIAIVIASAIVFVYKKL 120 Query 121 ARGFWQTVFFLPYVTSGVAVSIAFIYILDSSSGILNNIFHVNIKWLDSGERDTFNALWGI 180 RGFWQTVFFLPYVTSGVA+SIAF+YI DS+SGILN +F+VN KWLDSG RDTFNALW I Sbjct 121 LRGFWQTVFFLPYVTSGVAISIAFVYIFDSASGILNTVFNVNTKWLDSGSRDTFNALWAI 180 Query 181 LIFGIWKNMAFNVLVISTAMLSVDPTLYKVANLDGAKPIRQFFKITLPSIRPTLIFLLTL 240 LIFG+WKN+AFNVL+ISTAMLSV+P LYKVA+LD A P+RQFFKITLPSIRPTLIFL TL Sbjct 181 LIFGVWKNLAFNVLIISTAMLSVNPQLYKVASLDSANPVRQFFKITLPSIRPTLIFLTTL 240 Query 241 LILGGMQVFPISLFNGNDSEAVTNGGSTILLYIFQKIRDQNNNFAGAATLVLFILGVCYG 300 LILGGMQVFP++LF EAV NGG++ILLYIFQ+I+ N N AGAATLVLF+LGVCYG Sbjct 241 LILGGMQVFPLALFENKPEEAVANGGNSILLYIFQQIQSGNTNLAGAATLVLFVLGVCYG 300 Query 301 LVLRNGFRLIEWAQWKIKRHYVQTKLNL 328 LVLRNGF LIEW QWKIK+ YVQ +L L Sbjct 301 LVLRNGFYLIEWLQWKIKQLYVQKQLTL 328 Lambda K H a alpha 0.330 0.145 0.448 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36523770 Query= gi|13507875|ref|NP_109824.1| sn-glycerol-3-phosphate transport system permease protein [Mycoplasma pneumoniae M129] Length=319 Score E Sequences producing significant alignments: (Bits) Value gi|12045042|ref|NP_072852.1| ABC transporter, permease protein [M... 445 4e-160 >gi|12045042|ref|NP_072852.1| ABC transporter, permease protein [Mycoplasma genitalium G-37] Length=334 Score = 445 bits (1144), Expect = 4e-160, Method: Compositional matrix adjust. Identities = 220/319 (69%), Positives = 262/319 (82%), Gaps = 1/319 (0%) Query 1 MFKQSLIWYNRYVQKRKKGLDLTIKDRSWSNVLLGLIFKTVVLCFFGLMVIFPFYLMLVV 60 MFK +L + + Q + LDL++K RS ++L L+FKT+VL FFGL+VIFPFYLM+VV Sbjct 17 MFKNNLRFTSWINQHKFYQLDLSLKTRSIKQIVLTLVFKTLVLGFFGLIVIFPFYLMVVV 76 Query 61 ALTSDEVVLNIREPILKSDGWHFENFRRVLEDGKYLNAIWINSLVTILSIILRLFFTVSM 120 + SDE L+ R PIL D W+F+NF RVL DGKYLNAI +N+LVT+LS++L LFFT+ M Sbjct 77 SFASDERALDTRTPILWPDSWNFDNFSRVLSDGKYLNAIVVNTLVTVLSVLLTLFFTICM 136 Query 121 GYAFSLKKWKLKKLFWFIFLAVLILPESALLIGQYRVVVVANWNQPEKPAIILGLTMPFV 180 GY+FSL+KWK KKL WF FL+VLILPESALLIGQYR+V+VANWN P P I+LGL MPFV Sbjct 137 GYSFSLRKWKYKKLVWFFFLSVLILPESALLIGQYRIVIVANWNNPNSPLIVLGLIMPFV 196 Query 181 ASVFSGFMFRTAFEAIPPRIKESAFVDGCTGLRYFLKIAFPMVRSTTWTVSILTAFAAWN 240 +SVFSGFM+RT+FEAIP ++KESA +DGC G YFLKIA PMV+ST+WTV ILTAF+AWN Sbjct 197 SSVFSGFMYRTSFEAIPSQLKESALIDGCNGFNYFLKIALPMVKSTSWTVGILTAFSAWN 256 Query 241 SYLWPLLLLTNRPDLNINLWVLAQGTDGNAGQSDEQIRVLLNLKMAAAILAILPMFIVYF 300 SYLWPLLLL NR DLNINLWVL QG +A SDEQIR LLNLKM+AAILAILPMFI+YF Sbjct 257 SYLWPLLLLGNRVDLNINLWVLQQGI-LDANSSDEQIRTLLNLKMSAAILAILPMFIIYF 315 Query 301 LFRKRIMKAVGSRANTIKG 319 LF KRIM A+ +RANTIKG Sbjct 316 LFHKRIMNAIKNRANTIKG 334 Lambda K H a alpha 0.330 0.143 0.447 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35370201 Query= gi|13507876|ref|NP_109825.1| hypothetical protein MPN137 [Mycoplasma pneumoniae M129] Length=228 ***** No hits found ***** Lambda K H a alpha 0.312 0.130 0.349 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23103661 Query= gi|13507877|ref|NP_109826.1| hypothetical protein MPN138 [Mycoplasma pneumoniae M129] Length=166 ***** No hits found ***** Lambda K H a alpha 0.309 0.131 0.352 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14785206 Query= gi|13507878|ref|NP_109827.1| hypothetical protein MPN139 [Mycoplasma pneumoniae M129] Length=163 ***** No hits found ***** Lambda K H a alpha 0.314 0.131 0.360 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14350347 Query= gi|13507879|ref|NP_109828.1| DHH family phosphoesterases [Mycoplasma pneumoniae M129] Length=324 Score E Sequences producing significant alignments: (Bits) Value gi|12045043|ref|NP_072853.1| mgpA protein (mgpA) [Mycoplasma geni... 417 9e-149 gi|12045232|ref|NP_073043.1| hypothetical protein MG371 [Mycoplas... 118 1e-32 >gi|12045043|ref|NP_072853.1| mgpA protein (mgpA) [Mycoplasma genitalium G-37] Length=361 Score = 417 bits (1073), Expect = 9e-149, Method: Compositional matrix adjust. Identities = 193/318 (61%), Positives = 252/318 (79%), Gaps = 2/318 (1%) Query 5 VHRKGSIAEAVSAIQAHDKIVIFHHIRPDGDCLGAQHGLARLIQTNFPHKQVFCVGDPKH 64 V +KGSI EA++AI+ DKIVIFHH+RPDGDCLGAQ GL LI+ NF +K+V CVG+ + Sbjct 43 VMKKGSITEAINAIKQFDKIVIFHHVRPDGDCLGAQQGLFHLIKANFKNKEVKCVGNNNN 102 Query 65 NFPWLEMVFTPKEQITPELMQQALAVIVDANYKERIECRDLLDQNQFKAVLRIDHHPNED 124 F ++ M FT QI +++ALA++VDANYK RIE R+LLD+N FKAVLRIDHHPNED Sbjct 103 LFSFINMTFT--NQIDESFLKEALAIVVDANYKNRIELRELLDKNLFKAVLRIDHHPNED 160 Query 125 DLNTTHNFVDASYIAAAEQVVDLAVQAKWKLSPPAATALYLGIYTDSNRFLYSNTSWRTL 184 DLNT+ NFV+ SY+A EQ+V++A AKW + P AAT LY+GIYTDSNRFLYSNTS+RTL Sbjct 161 DLNTSFNFVEESYVACCEQIVEMATVAKWTIPPVAATLLYIGIYTDSNRFLYSNTSYRTL 220 Query 185 YLGSMLYRAQANIAKIHDELNHTSLKDIQFKQYVFKNFQTFQNVIYFVADKKFQKKLKVT 244 YL ++LY+A+A+I +HD LNHTSL D++FK+YV+ +F+T VIYF+ KK QK+L++T Sbjct 221 YLAAILYKAKADIRIVHDHLNHTSLADLKFKKYVYNHFKTQGQVIYFICTKKIQKRLRMT 280 Query 245 PLECARVNILANIEQFHIWLFFIEEGKNHYRVEFRSNGINVREVALKYGGGGHIQASGAV 304 +CARVN+L+NI + IWLFFIE+ N R++ RSNGINVR++A+KYGGGGH ASGA+ Sbjct 281 ADQCARVNLLSNIADYKIWLFFIEQANNEIRIDLRSNGINVRDIAIKYGGGGHNNASGAI 340 Query 305 LKSKRDIIRVVQDCQKQI 322 + +K+ I VV DC K+I Sbjct 341 ITNKKQISDVVSDCVKKI 358 >gi|12045232|ref|NP_073043.1| hypothetical protein MG371 [Mycoplasma genitalium G-37] Length=324 Score = 118 bits (296), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/302 (28%), Positives = 142/302 (47%), Gaps = 9/302 (3%) Query 18 IQAHDKIVIFHHIRPDGDCLGAQHGLARLIQTNFPHKQVFCVGDPKHNFPWLEMVFTPKE 77 ++ DK +F H+ PD D G+ + T F K+ + +G N E+ + Sbjct 16 VKQFDKFSLFVHVNPDFDAFGSAFAFKTFLNTFFSEKKAYVMGSYNINADGRELFPFEQT 75 Query 78 QITPELMQQALAVIVDANYKERIECRDLLDQNQFKAVLRIDHHPNEDDLNTTHNFVDASY 137 I + ++++LA+I D + +ER+ + K +RIDHHP + ++D+S+ Sbjct 76 DINDDFVKESLAIIFDTSNQERVLTQK---HKLAKETVRIDHHPRTEKF-ADMEWIDSSF 131 Query 138 IAAAEQVVDLAVQAKWKLSPPAATALYLGIYTDSNRFLYSNTSWRTLYLGSMLYRAQANI 197 A AE + L +Q +KL+ A+ LY GI TD+ RF T+ +T L + L N Sbjct 132 SATAEMIGYLILQMGYKLNDEIASYLYAGIITDTQRFWGPTTTPQTFALTAKLMETGFNR 191 Query 198 AKIHDELNHTSLKDIQFKQYVFKNFQTFQNVIYFVADKK--FQKKLKVTPLECARVNILA 255 K+HD + L + ++ YV + +N + + KK ++ V+PL V+ L Sbjct 192 NKVHDAVYLKPLLEHKYFSYVLSKAKITKNGLAYALIKKGAYKHFGVVSPLPM--VHALN 249 Query 256 NIEQFHIW-LFFIEEGKNHYRVEFRSNGINVREVALKYGGGGHIQASGAVLKSKRDIIRV 314 NI+ IW + E + RS I + A + GGGH A+ VL K +++ Sbjct 250 NIKGVKIWTTVYFNESIKKWIGSIRSRNIPINNFAQMFNGGGHKYAAAFVLDEKNQFMKL 309 Query 315 VQ 316 VQ Sbjct 310 VQ 311 Lambda K H a alpha 0.323 0.136 0.411 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35815945 Query= gi|13507880|ref|NP_109829.1| ADP1_MYCPN adhesin P1 [Mycoplasma pneumoniae M129] Length=1627 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 1226 0.0 gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 87.8 5e-19 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 1226 bits (3171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 731/1610 (45%), Positives = 975/1610 (61%), Gaps = 198/1610 (12%) Query 1 MHQTKKTALSKSTWILILTATASLATGLTVVGHFTSTTTTLKRQ--QFSYTRPDEVALRH 58 MHQ KK L+K +W LTA +L V G+F + F+Y +P +++++H Sbjct 1 MHQPKK-RLAKKSWAF-LTAALTLGVITGVGGYFLFNQNKQRSSVSNFAY-QPKQLSVKH 57 Query 59 TNAINPRLTPWTYRNTSFSSLPLTGENPGAWALVR---DN-SAKGITAGSGSQQTTYDPT 114 A++ LTPWT+ N +FSSL +TGENPG++ LVR DN + +T S Y Sbjct 58 QQAVDETLTPWTWNNNNFSSLKITGENPGSFGLVRSQNDNLNISSVTKNSSDDNLKY-LN 116 Query 115 RTEAALTASTTFALRRYDLAGRALYDLDFSKL-NPQTPTRDQTGQITFNPFGGFGLSGAA 173 E L FA+RRYD GRALYD++ +K+ NP T R G+ F+PF GFGL+G A Sbjct 117 AVEKYLDGQQNFAIRRYDNNGRALYDINLAKMENPSTVQRGLNGEPIFDPFKGFGLTGNA 176 Query 174 PQQWNEVKNKVPVEVAQDPSNPYRFAVLLVPRSVVYYEQLQRGLGLPQQRTESGQNTSTT 233 P WNE+K KVPVEV Q P +P + VLLVP+ + Y L + ++ E S+ Sbjct 177 PTDWNEIKGKVPVEVVQSPHSPNLYFVLLVPKVALEYHNLNNQV--VKESLEVKATQSSF 234 Query 234 GAMFGLKVKNAEADTAKSNEKLQGAEATGSSTTSGSGQSTQRGGSSGDTKVKALKIEVKK 293 L+ + D++K EKL +E T SS +SG ST + KALK+EV++ Sbjct 235 NPTQRLQKDSPVKDSSKQGEKL--SETTASSMSSGMATST---------RAKALKVEVER 283 Query 294 KSDSEDNGQLQLEKNDLANAPIKRSEESGQSVQLKAD-DFGTALSSSGSGGNSNPGSPTP 352 S S+ L KND A P+K SG+ V+L+A+ +F A Sbjct 284 GSQSD-----SLLKNDFAKKPLKHKNSSGE-VKLEAEKEFTEA----------------- 320 Query 353 WRPWLATEQIHKDLPKWSASILILYDAPYARNRTAIDRVDHLDPKAMTANYPPSWRTPKW 412 W+P L T+QI ++ A+++ YDAPY+ N TA VDH+DPK M NYPPSW+TPKW Sbjct 321 WKPLLTTDQIARE-KGMGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKTPKW 379 Query 413 NHHGLWDWKARDVLLQTTGFFNPRRHPEWFDGGQTVADNEKTGFDVDNSENTKQGFQKEA 472 NHHG+WD+ AR++LLQTTGFFNPRRHPEWFD GQ ADN GF V ++++ K GF+K + Sbjct 380 NHHGIWDYNARNLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTDHKKDGFKKNS 439 Query 473 DSDKSAPIALPFEAYFANIGNLTWFGQALLVFGGNGHVTKSAHTAPLSIGVFRVRYNATG 532 S+PIALPFEAYFANIGN+ G ++ +FGGNGH TK T PLSIGVFR++Y Sbjct 440 ----SSPIALPFEAYFANIGNMVAIGNSVFIFGGNGHATKMFTTNPLSIGVFRIKYTDNF 495 Query 533 TSATVTGWPYALLFSGMVNKQTDGLKDLPFNNNRWFEYVPRMAVAGAKFVGRELVLAGTI 592 + ++VTGWPYA+LF G++N QT+GLKDLP NRWFEYVPRMAV+G K+VG +LVLAGT+ Sbjct 496 SKSSVTGWPYAVLFGGLINPQTNGLKDLPLGTNRWFEYVPRMAVSGVKWVGNQLVLAGTL 555 Query 593 TMGDTATVPRLLYDELESNLNLVAQGQGLLREDLQLFTPYGWANRPDLPIGAWSSSSSSS 652 TMGDTATVPRL YD+LE +LNLVAQGQGLLREDLQ+FTPYGWANRPD+P+GAW S Sbjct 556 TMGDTATVPRLKYDQLEKHLNLVAQGQGLLREDLQIFTPYGWANRPDIPVGAWLQDEMGS 615 Query 653 HNAPYYFHNNPDWQDRPIQNVVDAFIKPWEDKNGKDDAKYIYPYRYSGMWAWQVYNWSNK 712 P+YF NNPD QD + V+A I +++ D K++YPYRYSG++AWQ++NWSNK Sbjct 616 KFGPHYFLNNPDIQDNVNNDTVEALISSYKNT---DKLKHVYPYRYSGLYAWQLFNWSNK 672 Query 713 LTDQPLSADFVNENAYQPNSLFAAILNPELLAALPDKVKYGKENEFAANEYERFNQKLTV 772 LT+ PLSA+FVNEN+Y PNSLFAAILN +LL L DK+ YGKENEFA NE +RFNQ L++ Sbjct 673 LTNTPLSANFVNENSYAPNSLFAAILNEDLLTGLSDKIFYGKENEFAENEADRFNQLLSL 732 Query 773 APTQGTNWSHFSPTLSRFSTGFNLVGSVLDQVLDYVPWIGNGYRYGNNHRGVDDITAPQT 832 P TNW+ + + RF+TG NL S DQ LD++PWIGNG Sbjct 733 NPNPNTNWARYLNVVQRFTTGPNLDSSTFDQFLDFLPWIGNG------------------ 774 Query 833 SAGSSSGISTNTSGSRSFLPTFSNIGVGLKANVQATLGGSQT---MITGGSPRRTLDQAN 889 S+S + ++ S + LPTFSNI VG+K+ + L T I SP Sbjct 775 KPFSNSPSPSTSASSSTPLPTFSNINVGVKSMITQHLNKENTRWVFIPNFSP-------- 826 Query 890 LQLWTGAGWRNDKASSGQSDENHTKFTSATGMDQQGQSGTSAGNPDSLKQDNISKSGDSL 949 +WTGAG+R A+ +N F + + ++ +P+S + ++ SG S Sbjct 827 -DIWTGAGYRVQSANQ----KNGIPFEQV-----KPSNNSTPFDPNS-DDNKVTPSGGS- 874 Query 950 TTQDGNAIDQQEATNYTNLPPNLTPTADWPNALSFTNKNNAQRAQLFLRGLLGSIPVLVN 1009 + T Y LP +++PT+DW NAL+FTNKNN QR QL LR LLG+IPVL+N Sbjct 875 ----------SKPTTYPALPNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLIN 924 Query 1010 RSGSDSNKF-QATDQKWSYTDLHSDQTKLNLPAYGEVNGLLNPALVETYFGNTRAGGSGS 1068 +SG +++F + ++QKW T+ + NLP +GEVNGL N AL+ TY G G+ Sbjct 925 KSGDSNDQFNKDSEQKWDKTETNEG----NLPGFGEVNGLYNAALLHTY------GFFGT 974 Query 1069 NTTSS-PGIGFKIPEQNNDSKATLITPGLAWTPQDVGNLVV-SGTTVSFQLGGWLVTFTD 1126 NT S+ P IGFK + ++ S +TL+ GL WT QDVGNLVV + T+ FQLGGW +TFTD Sbjct 975 NTNSTDPKIGFK-ADSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTD 1033 Query 1127 FVKPRAGYLGLQLTGLDASDATQRALIWAPRPWAAFRGSWVNRLGRVESVWDLKGVWADQ 1186 F++PR GYLG+ L+ L + +IWA +PW +F+GS+++ G +S+WD + Sbjct 1034 FIRPRTGYLGITLSSLQ-----DQTIIWADQPWTSFKGSYLDSDGTPKSLWDPTAL---- 1084 Query 1187 AQSDSQGSTTTATRNALPEHPNALAFQVSVVEASAYKPNTSSGQTQSTNSSPYLHLVKPK 1246 +S STT T L + +FQ+ Y+PN Q+TN+ Y L++P Sbjct 1085 -KSLPNSSTTYDTNPTL-----SPSFQL-------YQPNKVKAY-QTTNT--YNKLIEPV 1128 Query 1247 KVTQSDKLDDDLKNLLDPNQVRTKLRQSFGTDHSTQPQPQSLKTTTPVFGTSSGNLSSVL 1306 T + L LL ++ KL + GT +S GN Sbjct 1129 DATSAATNMTSLLKLLTTKNIKAKLGK--GT------------------ASSQGN----- 1163 Query 1307 SGGGAGGGSSGSGQSGVDLSPVEKVSGWLVGQLPSTSDGNTSSTNNLAPNTNTGNDVVGV 1366 GG S + E + Q + S NN + +G+ Sbjct 1164 --NNGGGVSQTINTITTTGNISEGLKEETSIQAETLKKFFDSKQNNKSE--------IGI 1213 Query 1367 GRLSESNAAKMNDDVDGIVRTPLAELLDGEGQTADTGPQSVKFKSPDQIDFNRLFTHPVT 1426 G +S KM+ + G+V TPL L++G+G T+D+ + + FK +QIDFNRLFT PVT Sbjct 1214 G---DSTFTKMDGKLTGVVSTPLVNLINGQGATSDSDTEKISFKPGNQIDFNRLFTLPVT 1270 Query 1427 DLFDPVTMLVYDQYIPLFIDIPASVNPKMVRLKVLSFDTNEQSLGLRLEFFKPDQDTQPN 1486 +LFDP TM VYDQY+PL +++P+ + +RLKV+S+ Q+LG+RLEF Sbjct 1271 ELFDPNTMFVYDQYVPLLVNLPSGFDQASIRLKVISYSVENQTLGVRLEF---------- 1320 Query 1487 NNVQVNPNNGDFLPLLTASSQGPQTLFSPFNQWPDYVLPLAITVPIVVIVLSVTLGLAIG 1546 +P F+P+L ASS GPQT+F PFNQW DYVLPL +TVPIVVI+LSVTLGL IG Sbjct 1321 ----KDPQTQQFIPVLNASSTGPQTVFQPFNQWADYVLPLIVTVPIVVIILSVTLGLTIG 1376 Query 1547 IPMHKNKQALKAGFALSNQKVDVLTKAVGSVFKEIINRTGISQAPKRLKQ 1596 IPMH+NK+AL+AGF LSN+KVDVLTKAVGSVFKEIINRTGIS APK+LKQ Sbjct 1377 IPMHRNKKALQAGFDLSNKKVDVLTKAVGSVFKEIINRTGISNAPKKLKQ 1426 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 87.8 bits (216), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 71/119 (60%), Gaps = 9/119 (8%) Query 1509 PQTLFSPFNQWPDYVLPLAITVPIVVIVLSVTLGLAIGIPMHKNKQALKAGFALSNQKVD 1568 P +F+ F P +V+P+++ + ++ + + LGL IGIPM++ ++ A F +KVD Sbjct 926 PSRVFAGFAALPAWVIPVSVGSSVGILFILLVLGLGIGIPMYRVRKLQDASFVNVFKKVD 985 Query 1569 VLTKAVGSVFKEIINRTG-ISQAPKRLKQTSAAKPGAPRPPVPPKPGAPKPPVQPPKKP 1626 LT AVGSV+K+II +TG + +AP LK AA P +P KPPVQPP KP Sbjct 986 TLTTAVGSVYKKIITQTGVVKKAPSALK---AANPSVKKP-----AAFLKPPVQPPSKP 1036 Lambda K H a alpha 0.312 0.130 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 209608808 Query= gi|13507881|ref|NP_109830.1| involved in cytadherence [Mycoplasma pneumoniae M129] Length=1218 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 941 0.0 gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 62.4 3e-11 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/760 (63%), Positives = 581/760 (76%), Gaps = 22/760 (3%) Query 467 NVITQLYHTSTAQLAYLNGQIVVMGSDRVPSLWYWVV---GEDQESGKATWWAKTELNWG 523 NVITQLY+ ST++LA N IVVMG+ +PS+WYWVV ++ S K TW+A T L+WG Sbjct 289 NVITQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWG 348 Query 524 TDKQKQFVENQLGFKDDSNSDSKNSNLKAQGLTQPAYLIAGLDVVADHLVFAAFKAGAVG 583 DKQKQFVENQLG+K+ ++++S N ++ TQPAYLI+G+D V D ++F+ FKAG+VG Sbjct 349 EDKQKQFVENQLGYKETTSTNSHN--FHSKSFTQPAYLISGIDSVNDQIIFSGFKAGSVG 406 Query 584 YDMTTDSSAS---TYNQALAWSTTAGLDSDGGYKALVENTAGLNGPINGLFTLLDTFAYV 640 YD ++ SS+S T +QALAWSTT LDS GYK LV N GLNGPING F++ DTF++V Sbjct 407 YDSSSSSSSSSSSTKDQALAWSTTTSLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFV 466 Query 641 TPVSGMKGGSQNNEEVQTTYPVKSDQKATAKIASLINASPLNSYGDDGVTVFDALGLNFN 700 P SG + ++T YPVK DQK+T KI SLINA+PLNSYGD+G+ VFDALGLN+N Sbjct 467 VPYSGNHTNNGTTGPIKTAYPVKKDQKSTVKINSLINATPLNSYGDEGIGVFDALGLNYN 526 Query 701 FKLNEERLPSRTDQLLVYGIVNESELKSARENAQSTSDDNSNTKVKWTNTASHYLPVPYY 760 FK N+ERLPSRTDQ+ VYGIV+ +EL+SA+ +A ST D TKV W+NT S YLPVPY Sbjct 527 FKSNQERLPSRTDQIFVYGIVSPNELRSAKSSADSTGSD---TKVNWSNTQSRYLPVPYN 583 Query 761 YSANFPEAGNRRRAEQRNGVKIST---LESQATDGFANSLLNFGTGLKAGVDPAPVARGH 817 YS +A +R E R G ++T L+S A DGFANS+ NF GLKAG+DP PV G Sbjct 584 YSEGIIDADGFKRPENR-GASVTTFSGLKSIAPDGFANSIANFSVGLKAGIDPNPVMSGK 642 Query 818 KPNYSAVLLVRGGVVRLNFNPDTDKLLDSTDKNSEPISFSYTPFGSAESAVDLTTLKDVT 877 K NY AV+L RGGVVRLNFNP D LL +TD N PISFS+TPF +AESAVDLTT K+VT Sbjct 643 KANYGAVVLTRGGVVRLNFNPGNDSLLSTTDNNIAPISFSFTPFTAAESAVDLTTFKEVT 702 Query 878 YIAESGLWFYTFDNGEKPTYDGKQQQVKNRKGYAVITVSRTGIEFNEDANTTTLSQAPAA 937 Y ESGLW Y FD+ KP++DGKQ V + G++VITVSRTGIE N+D TTTL AP+A Sbjct 703 YNQESGLWSYIFDSSLKPSHDGKQTPVTDNMGFSVITVSRTGIELNQDQATTTLDVAPSA 762 Query 938 LAVQNGIASSQDDLTGILPLSDEFSAVITKDQTWTGKVDIYKNTNGLFEKDDQLSENVKR 997 LAVQ+GI S+ LTG+LPLS+EFSAVI KD K+DIYKN NGLFE D QLS +V Sbjct 763 LAVQSGIQSTTQTLTGVLPLSEEFSAVIAKDSD-QNKIDIYKNNNGLFEIDTQLSNSVAT 821 Query 998 RDNGLVPIYNEGIVDIWGRVDFAANSVLQARNLTDKTVDEVINNPDILQSFFKFTPAFDN 1057 + GL P Y E VD WG+V+FA NSVLQARNL DKTVDE+IN P+IL SFF+FTPAF++ Sbjct 822 NNGGLAPSYTENRVDAWGKVEFADNSVLQARNLVDKTVDEIINTPEILNSFFRFTPAFED 881 Query 1058 QRAMLVGEKTSDTTLTVKPKIEYLDGNFYGEDSKIAGIPLNIDFPSRIFAGFAALPSWVI 1117 Q+A LV K SDT+L+V P+I++LDGNFY +S IAG+PLNI FPSR+FAGFAALP+WVI Sbjct 882 QKATLVATKQSDTSLSVSPRIQFLDGNFYDLNSTIAGVPLNIGFPSRVFAGFAALPAWVI 941 Query 1118 PVSVGSSVGILLILLILGLGIGIPMYKVRKLQDSSFVDVFKKVDTLTTAVGSVYKKIITQ 1177 PVSVGSSVGIL ILL+LGLGIGIPMY+VRKLQD+SFV+VFKKVDTLTTAVGSVYKKIITQ Sbjct 942 PVSVGSSVGILFILLVLGLGIGIPMYRVRKLQDASFVNVFKKVDTLTTAVGSVYKKIITQ 1001 Query 1178 TSVIKKAPSALKAANNAAPKAPVKPAAPTAPRPPVQPPKK 1217 T V+KKAPSALKAAN + KPAA +PPVQPP K Sbjct 1002 TGVVKKAPSALKAANPSVK----KPAA--FLKPPVQPPSK 1035 Score = 176 bits (445), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/273 (39%), Positives = 151/273 (55%), Gaps = 48/273 (18%) Query 26 NTYLL-QDHNTLTPYTPFTTPL-NGGLDVVRAAHLHPSYELVDWKRVGDTKLVALVRSAL 83 NT+L+ +D +T YTPF TP+ + D+V A L SY++ D + + +T L L +S Sbjct 26 NTFLVKEDSKNVTAYTPFATPITDSKSDLVSLAQLDSSYQIAD-QTIHNTNLFVLFKSRD 84 Query 84 VRVKFQDTTSSDQSNTNQNALSFD-TQESQKALNGSQSGSSDTSGSNSQDFASYVLIFKA 142 V+VK++ + S N +SFD T + +K SYV+ F Sbjct 85 VKVKYESSGS--------NNISFDSTSQGEK--------------------PSYVVEFTN 116 Query 143 APR--ATWVFERKIKLALPYVKQESQGSGDQGSNGKGSLYKTLQDLLVEQPVTPYTPNAG 200 + W +K +L +P V + + + L++L++EQP+T YT N+ Sbjct 117 STNIGIKWTMVKKYQLDVPNVSSD--------------MNQVLKNLILEQPLTKYTLNSS 162 Query 201 LARVNGVAQDTVHFGSGQESSWNSQRSQKGLKNNPGPKAVTGFKLDKGRAYRKLNESWPV 260 LA+ G Q VH GSGQ + W SQR+Q L NNP P A TGFKL G AYRKL+ESWP+ Sbjct 163 LAKEKGKTQREVHLGSGQANQWTSQRNQHDLNNNPSPNASTGFKLTTGNAYRKLSESWPI 222 Query 261 YEPLDSTKEGKGKDESSWKNSEKTTAENDAPLV 293 YEP+D TK+GKGKD S W ++E+ A+NDAP V Sbjct 223 YEPIDGTKQGKGKDSSGWSSTEENEAKNDAPSV 255 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query 1102 PSRIFAGFAALPSWVIPVSVGSSVGILLILLILGLGIGIPMYKVRKLQDSSFVDVFKKVD 1161 P +F F +V+P+ V + ++++ + LGL IGIPM++ +K + F KKVD Sbjct 1339 PQTVFQPFNQWADYVLPLIVTVPIVVIILSVTLGLTIGIPMHRNKKALQAGFDLSNKKVD 1398 Query 1162 TLTTAVGSVYKKIITQTSVIKKAPSALKAA 1191 LT AVGSV+K+II +T I AP LK A Sbjct 1399 VLTKAVGSVFKEIINRTG-ISNAPKKLKQA 1427 Lambda K H a alpha 0.311 0.128 0.367 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 155456325 Query= gi|13507882|ref|NP_109831.1| hypothetical protein MPN143 [Mycoplasma pneumoniae M129] Length=175 ***** No hits found ***** Lambda K H a alpha 0.312 0.124 0.357 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15891590 Query= gi|13507883|ref|NP_109832.1| hypothetical protein MPN144 [Mycoplasma pneumoniae M129] Length=413 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 201 2e-58 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 201 bits (510), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/224 (50%), Positives = 151/224 (67%), Gaps = 19/224 (8%) Query 38 GQQEATNYTNLPPNLTPTADWPNALSFTNKNNAHRAQLFLRGLLGSIPVLVNRSGSDSNK 97 G + T Y LP +++PT+DW NAL+FTNKNN R QL LR LLG+IPVL+N+SG +++ Sbjct 873 GSSKPTTYPALPNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLINKSGDSNDQ 932 Query 98 F-QATDQKWSYTDLQSDQTKLNLPAYGEVNGLLNPALVETYFGNTRAGGSGSNTTSS-PG 155 F + ++QKW T+ NLP +GEVNGL N AL+ TY G G+NT S+ P Sbjct 933 FNKDSEQKWDKTETNEG----NLPGFGEVNGLYNAALLHTY------GFFGTNTNSTDPK 982 Query 156 IGFKIPEQNNDSKATLITPGLAWTPQDVGNLVV-SGTSLSFQLGGWLVSFTDFIKPRAGY 214 IGFK + ++ S +TL+ GL WT QDVGNLVV + TS FQLGGW ++FTDFI+PR GY Sbjct 983 IGFKA-DSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGY 1041 Query 215 LGLQLSGLDASDSDQRELIWAKRPWAAFRGSWVNRLGRVESVWD 258 LG+ LS L + +IWA +PW +F+GS+++ G +S+WD Sbjct 1042 LGITLSSL-----QDQTIIWADQPWTSFKGSYLDSDGTPKSLWD 1080 Lambda K H a alpha 0.308 0.126 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 47802980 Query= gi|13507884|ref|NP_109833.1| hypothetical protein MPN145 [Mycoplasma pneumoniae M129] Length=179 ***** No hits found ***** Lambda K H a alpha 0.311 0.129 0.338 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 16469466 Query= gi|13507885|ref|NP_109834.1| hypothetical protein MPN146 [Mycoplasma pneumoniae M129] Length=265 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 271 8e-88 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 248 2e-79 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 271 bits (693), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 144/271 (53%), Positives = 182/271 (67%), Gaps = 10/271 (4%) Query 1 MLASCGAKGRFDQVDDGKIKLASSLTGKRDV-ILQEVLNKYNSRKAKDDYPIEITKIAGS 59 +L +C +FDQVDDGKIKLASSLT KR L+ V+ KYN K DYPIEI +IAG Sbjct 19 LLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYNDTKDPGDYPIEIVQIAGG 78 Query 60 YDGGRSDLQTRLSVKDKTTFYNMILNYSDTISTLGRSNMELPLDSVDVSQFSENFLSFND 119 YDGG+ D+QT++S KDK FYN+ILNY + +STL RS M L D V+V + NFLSFN Sbjct 79 YDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALNFDGVNVDKLHPNFLSFNS 138 Query 120 RISGISRKGIYGIPVSMSTDILVINGPVLHYILNSAKKK----DGAVTKKNASNSNGNEG 175 RI GI GIY IP+SMSTD++VINGPVLHYILNSA+K+ V +S S +G Sbjct 139 RIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTPTSTTVQATVSSRSAEKKG 198 Query 176 TLTVNNDQQTTELWKKIEEAAKTNG-KTTQEQTKRDAKQSTSLIQLKEGSANTTEGNASE 234 TL + ND +TT+LW+ I+ A+ N +TT+EQ + S+S G T ++ Sbjct 199 TLEIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSSSTTSTTGETKDT----TK 254 Query 235 SDKEIKKSWGNYQEVDGGLKGYTFKASVFEN 265 SD +IK+ WG YQEVDGGLK +TFKAS+FEN Sbjct 255 SDNKIKEFWGEYQEVDGGLKNFTFKASIFEN 285 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 248 bits (632), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 127/265 (48%), Positives = 174/265 (66%), Gaps = 18/265 (7%) Query 4 SCGAKGRFDQVDDGKIKLASSLTGKRDVILQEVLNKYNSRKAKDDYPIEITKI--AGSYD 61 +C A RFDQVDDGKIKLA+ + L +++KYNS+K +DYP+E+ + GSY Sbjct 22 ACSAVYRFDQVDDGKIKLATVTSASASGSLTTIISKYNSQKDPNDYPVELVSLDSRGSYS 81 Query 62 GGRSDLQTRLSVKDKTTFYNMILNYSDTISTLGRSNMELPLDSVDVSQFSENFLSFNDRI 121 G+ DLQ +L KDK FYN+ NYSD +S L RS MEL D+VD S F +FLSFN+ I Sbjct 82 NGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQMELSFDTVDTSNFDPSFLSFNNNI 141 Query 122 SGISRKGIYGIPVSMSTDILVINGPVLHYILNSAKKKDGAVTKKNASNSNGNEGTLTVNN 181 S ++ IY +P ++S ++LV+NGPVLHYIL+SAKK +++++N N+GT+ V + Sbjct 142 SNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDSNTTLSTHSASNNSNKGTMVVAS 201 Query 182 DQQTTELWKKIEEAAKTNGKTTQEQTKRDAKQSTSLIQLKEGSANTTEGNASE-SDKEIK 240 D +T+ LW K+E AAK N +T + Q + +N++E N ++ SD EIK Sbjct 202 DSETSSLWTKLEAAAKMNAQTNETQVLK---------------SNSSESNQTQASDTEIK 246 Query 241 KSWGNYQEVDGGLKGYTFKASVFEN 265 K WG+YQEVDGGLK YTFKASVF N Sbjct 247 KIWGDYQEVDGGLKNYTFKASVFNN 271 Lambda K H a alpha 0.308 0.127 0.345 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27936468 Query= gi|13507886|ref|NP_109835.1| hypothetical protein MPN147 [Mycoplasma pneumoniae M129] Length=485 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 444 5e-151 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 264 2e-82 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 444 bits (1142), Expect = 5e-151, Method: Compositional matrix adjust. Identities = 255/524 (49%), Positives = 333/524 (64%), Gaps = 88/524 (17%) Query 2 VDFATRVAKSFKDKVSGIDNKKGTDIQGVLGLDSTPNVLFASVFAAGGGSYDNFFYKVE- 60 +DFATR+A SF +KV I NK G D+QGVLG+DS+ N L+A+VFAAG +YDNFF+ ++ Sbjct 290 LDFATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDK 349 Query 61 -NGRADFRNFANKGTSYKNLEKVYNDYKNLIGSNGLFASKDGSYSSNFEKFHQLAFYVGS 119 G AD+ NF NK +SY+NLE VYND+ LI +NGLF ++ GSYSSNFEKFHQLAF V S Sbjct 350 RTGYADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSS 409 Query 120 SSGYNYAFADETAKRLKFGDSAIEYPNDTLEIKAPTNNSQSGDGNGGTNNDNLLGTFDIR 179 S GY+Y FA + AKRLKF + AIEYP+ T I+AP N NLLGTF + Sbjct 410 SGGYSYYFAKDNAKRLKFSNYAIEYPSFTQTIQAP---------NSSETESNLLGTFKLS 460 Query 180 EKSNGKKGESNGKQGNGQDKKTISLYKDSIPKEKTEGTDAILISDNQLINQLQTAAKTSS 239 EK I+LYK SIP K +G DAILIS+ LIN L+ A Sbjct 461 EKD-------------------INLYKGSIPSGKQQGVDAILISNPNLINILEQA----- 496 Query 240 SQNKANTAAITFKQSNKSETDQSTTSQVIGYTTTASLKADKKNIFDVKKLNNEKSERKII 299 KQ N ++ +STT+++IGYTTTA++ D +NIF V KLNNE+ +RKII Sbjct 497 ------------KQKNTAQGSESTTNKIIGYTTTANVNVDNQNIFSVSKLNNEQFQRKII 544 Query 300 VGATVETLNQANTLQANEAIIKPAPGKYQSTDSHKVMITQGPNIVGIHANEKEDKETQKF 359 V AT ETL+Q+ TLQ+NE+I+ P PGKY+STD +KVMITQGPN++GIHANEKE+ ET+KF Sbjct 545 VNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIGIHANEKENIETKKF 604 Query 360 INWYLNKEES-WSV----QNSGSTTTKKQTAAQYFAEQSSYITPLKNNFK---------- 404 +NW+LN+ + W+ +NS TT +TAA+YF +Q+SYI PLK F Sbjct 605 VNWFLNQSITDWNSNNQQKNSDQTT---KTAAEYFTDQASYILPLKEKFNKSSDLELKGS 661 Query 405 -----------------------ADQSATKDSTVNTNYFTKQTFDLFKEVNDGKVLGFND 441 A A K + N+N FT + +LF++ + +++ F+D Sbjct 662 SSSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNTFTAKALELFQQAANNEIIPFSD 721 Query 442 PSDFRSGKFRNTIGSTFNATISSKVDFNKFFENFKASLGSGFER 485 PSDFR+G FRN I S+FNA ++SKV FN+F +NF SLGSGF R Sbjct 722 PSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLGSGFRR 765 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 264 bits (674), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 179/482 (37%), Positives = 270/482 (56%), Gaps = 65/482 (13%) Query 3 DFATRVAKSFKDKVSGIDNKKGTDIQGVLGLDSTPNVLFASVFAAGGGSYDNFFYKVENG 62 DFATR+AKSF + KKG ++Q V G+ S N L+ ++FA+G Y+NF + ++N Sbjct 277 DFATRIAKSFTKLQTT--TKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQ 334 Query 63 RADFRNFANKG-TSYKNLEKVYNDYKNLIGSNGLFASKDGSYSSN-FEKFHQLAFYVGSS 120 R +F NF NK T+++NL+ ++N +K+LI NGL ++ + N + KF+QLAFY S+ Sbjct 335 RINFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSST 394 Query 121 SGYNYAFADETAKRLKFGDSAIEYPNDTLEIKAPTNNSQSGDGNGGTNNDNLLGTFDIRE 180 + + Y+FA ++ KRL D IE N+ K+ + S D + NN NL+GT + Sbjct 395 ARFPYSFASDSVKRLIVNDKTIENKNN----KSVFEVNLSSDSD---NNSNLIGTVSL-- 445 Query 181 KSNGKKGESNGKQGNGQDKKTISLYKDSIPKEKTEGTDAILISDNQLINQLQTAAKTSSS 240 ++ K +SLY+ + K G DA+LI D LIN L K+ S Sbjct 446 ----------------ENSKQVSLYEKQVDSNKQIGVDALLIKDETLINHL----KSLKS 485 Query 241 QNKANTAAITFKQSNKSETDQSTTSQVIGYTTTASLKADKKNIFDVKKLNNEKSERKIIV 300 Q A +A+ T S+T Q+ T + +TT + AD+K IFDV KLN + + KII+ Sbjct 486 QVSAKSASET------SQTKQNKT--FLAFTT---VNADQKAIFDVGKLNGKTA--KIII 532 Query 301 GATVETLNQANTLQANEAIIKPAPGKYQSTDSHKVMITQGPNIVGIHANEKEDKETQKFI 360 AT T + +TLQ EAI+ AP +++STD + + QGP+++GIHANE+ED ET+KF+ Sbjct 533 NATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFV 592 Query 361 NWYLNKEESWSVQNSGSTTTKKQTAAQYFAEQSSYITPLKNNFKADQSATKDSTVNTNYF 420 NWYLN + W +NS +T A+Y A+++SY+ P KN ++T + N F Sbjct 593 NWYLNTKVQWE-ENS------IKTPAEYVADKASYLLPFKNRL--------NNTNSYNEF 637 Query 421 TKQTFDLFKEVNDGKVLGFNDPSDFRSGKFRNTIGSTFNATISSK-VDFNKFFENFKASL 479 K F D V F +P+DF S K R+ + S NA I++ +DF+ F + L Sbjct 638 VKTAVSQFA---DKNVTKFAEPADFLSNKVRDGVKSNLNAAINNHSIDFDSFINDLTDYL 694 Query 480 GS 481 GS Sbjct 695 GS 696 Lambda K H a alpha 0.308 0.126 0.346 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 57586443 Query= gi|13507887|ref|NP_109836.1| hypothetical protein MPN148 [Mycoplasma pneumoniae M129] Length=140 ***** No hits found ***** Lambda K H a alpha 0.314 0.131 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11381838 Query= gi|13507888|ref|NP_109837.1| hypothetical protein MPN149 [Mycoplasma pneumoniae M129] Length=434 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 149 7e-41 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 149 bits (377), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 147/308 (48%), Gaps = 89/308 (29%) Query 10 LNPSYELVDWKRVGDTKLVALVRSALVRVKFNDGTSSDSNNQDTNQNALSFD-TQESQKA 68 L+ SY++ D + + +T L L +S V+VK+ SS SNN +SFD T + +K Sbjct 60 LDSSYQIAD-QTIHNTNLFVLFKSRDVKVKYE---SSGSNN-------ISFDSTSQGEK- 107 Query 69 LNGSQSGSSDTSGSNSQDFASYILIFQAAPR--ATWVFERKIKLELPYVKNESGAGDSTT 126 SY++ F + W +K +L++P V Sbjct 108 -------------------PSYVVEFTNSTNIGIKWTMVKKYQLDVPNV----------- 137 Query 127 TNSGSLYTTLQDLLVEQPVTPYTPNAGLARVNGAAQDTVHFGSGQESSWNSQRSQKVLKN 186 S + L++L++EQP+T YT N+ LA+ G Q VH GSGQ + W SQR+Q L N Sbjct 138 --SSDMNQVLKNLILEQPLTKYTLNSSLAKEKGKTQREVHLGSGQANQWTSQRNQHDLNN 195 Query 187 NPGPKAVTGFKLDKGRAYRKLNEAWPVYEPLDSTKDGKGKDESSWNSSEKTTAESDAPLV 246 NP P A TGFKL G AYRKL+E+WP+YEP+D TK GKGKD S W+S+E+ A++DAP V Sbjct 196 NPSPNASTGFKLTTGNAYRKLSESWPIYEPIDGTKQGKGKDSSGWSSTEENEAKNDAPSV 255 Query 247 GSTGSQMAAVTDSQQSGDNNGLVSLAQRSTTVAVQKSDSSGSQGQGTTDNKFQKYLNTTQ 306 GS F KYLNT Q Sbjct 256 SGGGSSSGT------------------------------------------FNKYLNTKQ 273 Query 307 ALHQMGVI 314 AL +G++ Sbjct 274 ALESIGIL 281 Lambda K H a alpha 0.313 0.128 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 50755517 Query= gi|13507889|ref|NP_109838.1| hypothetical protein MPN150 [Mycoplasma pneumoniae M129] Length=224 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 228 4e-71 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 228 bits (582), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 111/202 (55%), Positives = 149/202 (74%), Gaps = 6/202 (3%) Query 1 MGSNAVPSLWYWVVD---ERTTSGRGTWWAHTELNWGTDKQKEFVENQLGFNETSATDSH 57 MG++ +PS+WYWVV+ + S + TW+A+T L+WG DKQK+FVENQLG+ ET++T+SH Sbjct 312 MGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWGEDKQKQFVENQLGYKETTSTNSH 371 Query 58 NFKKALLHQPAYLISGLDVVADHLVFAAFRAGAVGYDMTTDTNAS---TYNQALTWSTTA 114 NF QPAYLISG+D V D ++F+ F+AG+VGYD ++ +++S T +QAL WSTT Sbjct 372 NFHSKSFTQPAYLISGIDSVNDQIIFSGFKAGSVGYDSSSSSSSSSSSTKDQALAWSTTT 431 Query 115 GLDSAGGYKALVENTAGLNGPINGLFTLLDTFAYVTPVSGMKGGSKNTEAVQTTYPVKSD 174 LDS GYK LV N GLNGPING F++ DTF++V P SG + T ++T YPVK D Sbjct 432 SLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFVVPYSGNHTNNGTTGPIKTAYPVKKD 491 Query 175 QKASAKIASLINASPLNSYGDK 196 QK++ KI SLINA+PLNSYGD+ Sbjct 492 QKSTVKINSLINATPLNSYGDE 513 Lambda K H a alpha 0.313 0.128 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22529657 Query= gi|13507890|ref|NP_109839.1| hypothetical protein MPN151 [Mycoplasma pneumoniae M129] Length=133 ***** No hits found ***** Lambda K H a alpha 0.315 0.131 0.347 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10360391 Query= gi|13507891|ref|NP_109840.1| hypothetical protein MPN152 [Mycoplasma pneumoniae M129] Length=794 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 635 0.0 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 335 6e-106 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/816 (47%), Positives = 497/816 (61%), Gaps = 129/816 (16%) Query 1 MKFKYGAIVFSGLLGVSAILAACGARGKFNQVDDGKIKLASSLTSRSASTALQKVVEKYN 60 MK K V + G S +L AC +F+QVDDGKIKLASSLTS+ A+ AL+ VV+KYN Sbjct 1 MKLKGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYN 60 Query 61 KVKGVNDYPIEITQIAGGYDGGRTDLQTRVNVKDTTNFYNLILNYPDLVSTLGRVGMELP 120 K DYPIEI QIAGGYDGG+ D+QT+V+ KD NFYNLILNYP++VSTL R M L Sbjct 61 DTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALN 120 Query 121 FDKVKTDKLADRFLDFNNRISAISKKGIYGIPVSLSTEVLSINGPVLHYILNSAQGK-VS 179 FD V DKL FL FN+RI I GIY IP+S+ST+++ INGPVLHYILNSA+ + Sbjct 121 FDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTP 180 Query 180 SVTSVQRTADSGSGTTNNNGVTKPLKIDKENESTKKLWEEIENKAKENGKKTSSSRRKRN 239 + T+VQ T S S L+I ++E+T KLW+ I+ A+ N +T ++ ++ Sbjct 181 TSTTVQATVSSRSAEKKGT-----LEIANDSETT-KLWQNIQTTAQNNSNET--TKEQKQ 232 Query 240 LSSSKQMSTQTQPTDNSNDANQSDQAIEKTWGKYQEVEGGLKDYTFKASVFENWHDLLDF 299 + S S+ T T + D +SD I++ WG+YQEV+GGLK++TFKAS+FENW++ LDF Sbjct 233 VKRSSSSSSTTSTTGETKDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDF 292 Query 300 SNRVAKSFSN-INTNTNKKGTDIQGVLGIDSTPNSLFTSVFAAGGGNYDNFFYKV--ANG 356 + R+A SF + TNK G D+QGVLG+DS+ N+L+ +VFAAG NYDNFF+ + G Sbjct 293 ATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTG 352 Query 357 RADFSNFKNKGTSYQNLQKVYGDYKGLIDSNGLFVNKGGSYSSNFQKFHQLAYSISSTSG 416 AD+SNF NK +SYQNL+ VY D+ LI +NGLFVN+GGSYSSNF+KFHQLA+S+SS+ G Sbjct 353 YADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSGG 412 Query 417 FFYSFAGENSKRLKFDGGNF-IEFPGFTQAIYAPENNSQSGGESGDQTTNNEANLLGTFK 475 + Y FA +N+KRLKF N+ IE+P FTQ I AP N+S++ E+NLLGTFK Sbjct 413 YSYYFAKDNAKRLKF--SNYAIEYPSFTQTIQAP-NSSET-----------ESNLLGTFK 458 Query 476 IKSSNKSKSSSSKSSTKAETGKTSGGDQNQGKKGEGAQNQGKKGEGAQNQGKNGGVETTI 535 + S D N K G+ GK GV+ Sbjct 459 L----------------------SEKDINLYK-------------GSIPSGKQQGVD--- 480 Query 536 YLYKNSIPSGKNKGENAILIDNKTIVEQLESAAKKEDKKSGESTTEQTQIQSKSVTEQKQ 595 AILI N ++ LE A +K + ESTT Sbjct 481 ----------------AILISNPNLINILEQAKQKNTAQGSESTTN-------------- 510 Query 596 PKIIGYTTTGNVHEDNKHIFPIDKLTSDRNFDRKIIVGATEETLDKSNTLQSNEAIVLPA 655 KIIGYTTT NV+ DN++IF + KL +++ F RKIIV ATEETLD+S TLQSNE+IVLP Sbjct 511 -KIIGYTTTANVNVDNQNIFSVSKLNNEQ-FQRKIIVNATEETLDQSQTLQSNESIVLPM 568 Query 656 PSKYKSTDTNKVTITQGPNIIGIHVNEKENAETQKFVDWFLNSPQT-WEG--KGKGKEQT 712 P KYKSTD NKV ITQGPN+IGIH NEKEN ET+KFV+WFLN T W + K +QT Sbjct 569 PGKYKSTDKNKVMITQGPNLIGIHANEKENIETKKFVNWFLNQSITDWNSNNQQKNSDQT 628 Query 713 NKTAAEFFAESASYILPLKEIFEQ--------------------------KNEKKEGSDQ 746 KTAAE+F + ASYILPLKE F + N S Sbjct 629 TKTAAEYFTDQASYILPLKEKFNKSSDLELKGSSSSSNLTTSSASASLLISNNSSTASSP 688 Query 747 KDSKSNGRGKQTNLYTEKALELFRGISTDQIVSYSD 782 K+N +N +T KALELF+ + ++I+ +SD Sbjct 689 APKKTNNN---SNTFTAKALELFQQAANNEIIPFSD 721 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 335 bits (859), Expect = 6e-106, Method: Compositional matrix adjust. Identities = 197/433 (45%), Positives = 263/433 (61%), Gaps = 28/433 (6%) Query 1 MKFKYGAIVFSGLLGVSAILAACGARGKFNQVDDGKIKLASSLTSRSASTALQKVVEKYN 60 MKFK + S L ++ AC A +F+QVDDGKIKLA+ +TS SAS +L ++ KYN Sbjct 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKYN 59 Query 61 KVKGVNDYPIEITQI--AGGYDGGRTDLQTRVNVKDTTNFYNLILNYPDLVSTLGRVGME 118 K NDYP+E+ + G Y G+ DLQ ++ KD NFYNL NY D+VS L R ME Sbjct 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query 119 LPFDKVKTDKLADRFLDFNNRISAISKKGIYGIPVSLSTEVLSINGPVLHYILNSAQGKV 178 L FD V T FL FNN IS ++ IY +P ++S EVL +NGPVLHYIL+SA+ Sbjct 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDS 179 Query 179 SSVTSVQRTADSGSGTTNNNGVTKPLKIDKENESTKKLWEEIENKAKENGKKTSSSRRKR 238 ++ S S + N+N T + D E T LW ++E AK N + + K Sbjct 180 NTTLSTH------SASNNSNKGTMVVASDSE---TSSLWTKLEAAAKMNAQTNETQVLKS 230 Query 239 NLSSSKQMSTQTQPTDNSNDANQSDQAIEKTWGKYQEVEGGLKDYTFKASVFENWHDLLD 298 N S S QTQ SD I+K WG YQEV+GGLK+YTFKASVF NW DL D Sbjct 231 NSSESN----QTQA---------SDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLND 277 Query 299 FSNRVAKSFSNINTNTNKKGTDIQGVLGIDSTPNSLFTSVFAAGGGNYDNFFYKVANGRA 358 F+ R+AKSF+ + T T KKG ++Q V GI S N+L+T++FA+G +Y+NF + + N R Sbjct 278 FATRIAKSFTKLQT-TTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRI 336 Query 359 DFSNFKNK-GTSYQNLQKVYGDYKGLIDSNGLFVNKGGSYSSN-FQKFHQLAYSISSTSG 416 +FSNF NK T++QNL+ ++ +K LID NGL N + N + KF+QLA+ SST+ Sbjct 337 NFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTAR 396 Query 417 FFYSFAGENSKRL 429 F YSFA ++ KRL Sbjct 397 FPYSFASDSVKRL 409 Score = 135 bits (339), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/212 (38%), Positives = 119/212 (56%), Gaps = 30/212 (14%) Query 535 IYLYKNSIPSGKNKGENAILIDNKTIVEQLESAAKKEDKKSGESTTEQTQIQSKSVTEQK 594 + LY+ + S K G +A+LI ++T++ L+S ++Q+ +KS +E Sbjct 451 VSLYEKQVDSNKQIGVDALLIKDETLINHLKSL--------------KSQVSAKSASETS 496 Query 595 QPK----IIGYTTTGNVHEDNKHIFPIDKLTSDRNFDRKIIVGATEETLDKSNTLQSNEA 650 Q K + +TT V+ D K IF + KL KII+ ATE T K +TLQ EA Sbjct 497 QTKQNKTFLAFTT---VNADQKAIFDVGKLNGKT---AKIIINATETTNAKISTLQEKEA 550 Query 651 IVLPAPSKYKSTDTNKVTITQGPNIIGIHVNEKENAETQKFVDWFLNSPQTWEGKGKGKE 710 IVL AP +++STD + + QGP++IGIH NE+E+ ET+KFV+W+LN+ WE E Sbjct 551 IVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFVNWYLNTKVQWE------E 604 Query 711 QTNKTAAEFFAESASYILPLKEIFEQKNEKKE 742 + KT AE+ A+ ASY+LP K N E Sbjct 605 NSIKTPAEYVADKASYLLPFKNRLNNTNSYNE 636 Lambda K H a alpha 0.307 0.127 0.347 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 98934732 Query= gi|13507892|ref|NP_109841.1| conserved hypothetical protein, MG140 homolog, from M. genitalium [Mycoplasma pneumoniae M129] Length=1113 Score E Sequences producing significant alignments: (Bits) Value gi|12044992|ref|NP_072802.1| hypothetical protein MG140 [Mycoplas... 1768 0.0 >gi|12044992|ref|NP_072802.1| hypothetical protein MG140 [Mycoplasma genitalium G-37] Length=1113 Score = 1768 bits (4580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 875/1113 (79%), Positives = 986/1113 (89%), Gaps = 0/1113 (0%) Query 1 MNDWQWLKNRLVNAKTKAVSFWLAQTTSTILDIAELIKCCSDLKNTSINGLVDLINQQEK 60 MNDWQWLKNRLVN+KTK+VSFWL QT+S I+DIAELIKCCS+LKNTSINGL+D +NQQ+K Sbjct 1 MNDWQWLKNRLVNSKTKSVSFWLPQTSSNIIDIAELIKCCSELKNTSINGLIDFLNQQDK 60 Query 61 LEFNLTRLKEIDGEDARQLFGIEGNVYKHFQTELSRFYKQTRKHFRETGSESLFLGLPVI 120 LEFNLTRLKEID ED +QLFGIE +VYKHFQ E++RFYKQ KHFRETGSESLFL LPVI Sbjct 61 LEFNLTRLKEIDVEDGKQLFGIETSVYKHFQNEIARFYKQVNKHFRETGSESLFLALPVI 120 Query 121 EGINEFNDVFRAPLLYVGVKLKVAPRLERFWLEINREEIFLNPTIIGVEINKRNSLFKNN 180 EGINEFND+FRAPLLYVGVKLKV+PR ERFWLEIN+EEIFLNPTIIGVE NKRNSLFKNN Sbjct 121 EGINEFNDIFRAPLLYVGVKLKVSPRFERFWLEINKEEIFLNPTIIGVETNKRNSLFKNN 180 Query 181 YDTTKVDINQALEIFRELEYQFRMPLTSELKSFSKKAKSDFNTEKRTNFLTNNVLLGIFD 240 YDTTK+D+N AL++F ELEY+FRMPLTSELKSFSKKAKSDFNTEKRTN+L NNVLLGIFD Sbjct 181 YDTTKIDVNDALKVFSELEYEFRMPLTSELKSFSKKAKSDFNTEKRTNYLINNVLLGIFD 240 Query 241 VKGDQLFQNFNEILNTDPDVLDELLKDRRDLLYDNREFRENFNLKGTYLFSHLDIFQQYA 300 VKGDQLFQNFNEILNTDPDVLDELLKDRRDLL +NREFRE F+LK TYLFSHLDI+QQYA Sbjct 241 VKGDQLFQNFNEILNTDPDVLDELLKDRRDLLLENREFREQFDLKDTYLFSHLDIYQQYA 300 Query 301 VKQAFDGDVIIEGPPGTGKSETIVNILVNLALNKKKVLFVSEKVTALDVVYNRLGSFKHI 360 VKQA GD+IIEGPPGTGKSETIVNILVNL LN KKVLFVSEKVTALDVVYNRLGSFKHI Sbjct 301 VKQALLGDLIIEGPPGTGKSETIVNILVNLVLNNKKVLFVSEKVTALDVVYNRLGSFKHI 360 Query 361 ALFNASVASEKKRFYSQFADYESFFTDNFSKKDLVNEMPVFDGQWVDKILSEFTNLQNIY 420 ALFNASVA+EKKRFY+QFA++E++FT FSKKDL +P F+G+WVD IL F LQ +Y Sbjct 361 ALFNASVAAEKKRFYNQFAEFETYFTTYFSKKDLDATLPTFEGKWVDDILGAFQALQALY 420 Query 421 DTQINSGNQSYSFKEILSSFPILDVSYIKIKEHDRFDEWVRVFSSQVWLEKHLTYLAFKA 480 DT+INSG +SFKEI+SSF +LD SYIKIKE++RFDEWVRVFS+ +WLEKHL+Y K Sbjct 421 DTKINSGENLFSFKEIVSSFQMLDASYIKIKEYERFDEWVRVFSNPLWLEKHLSYQELKK 480 Query 481 ELSKRWQNIDNFYALKDLLEKRKNIRVLCYVLDYFEQNNSIIKPKRVLLYTPTERGQKQL 540 ELS+RW IDNFY L+ LL + K +VL YVL++FEQ N++I PK VL Y P+ + Q L Sbjct 481 ELSQRWNGIDNFYQLQSLLNQTKKRKVLNYVLEHFEQFNTVISPKHVLFYKPSNKSQLLL 540 Query 541 HQLQQDVAKYNSLQRFKSAAKFETIKLNLANKLAQNAKPFFFSWFIQTHAQTLLENLVQT 600 QL+QDV +Y SLQRF+S KFETIKLN N++ +N P+FFSWFIQ HA+ LLE LV Sbjct 541 KQLKQDVEQYTSLQRFQSPTKFETIKLNFINQVNENPTPWFFSWFIQFHAKPLLEKLVSF 600 Query 601 QKQLVKAKQSYLSKIEQYVVSCKRILKATILANFFELYQTNKNELLDICREAKNPVLKEI 660 + ++K KQ+YL+ IE YV SCK++LK TIL NFF+LYQTNK+ELL+ICR+AKNPVLKEI Sbjct 601 ESNIIKTKQAYLNGIESYVASCKKLLKTTILNNFFQLYQTNKDELLEICRQAKNPVLKEI 660 Query 661 TWWFKKNFALLSKLFPVHIMTFESAALLTPNQRRLYDYVVIDEASQVYLERAIPILYRGA 720 TWWFKK+F LL KLFPVHIMT ESAA LTPNQR LYDYVVIDEASQV+LERAIPIL+R Sbjct 661 TWWFKKHFELLKKLFPVHIMTLESAATLTPNQRGLYDYVVIDEASQVFLERAIPILFRAD 720 Query 721 KYIIAGDTKQLKPSNFFQARAEYDVDEEFEDGNVEAAVHSTSLLHFLKNRSRILTLLKFH 780 KYIIAGDTKQLKP+NFFQ+RAEYDVDEEFEDGN+EAAVHS+SLLHFLKNRSRILTLLKFH Sbjct 721 KYIIAGDTKQLKPANFFQSRAEYDVDEEFEDGNIEAAVHSSSLLHFLKNRSRILTLLKFH 780 Query 781 YRSDSANLIAFTNNRIYNNELIFMNKATADKQVFIVHDVIDGIWRNNRNLQEARDVVQRL 840 YRSDSA+LIAFTNNRIY+NELIFMNKA AD++VFIVHDVIDGIW+NNRNLQEARDVVQRL Sbjct 781 YRSDSADLIAFTNNRIYDNELIFMNKANADQRVFIVHDVIDGIWKNNRNLQEARDVVQRL 840 Query 841 EQLTQTAEYQKSLGVICFNKNQAELIEYMIDKQNNPLLNEWRDRVNAQGEYVGLFVKNIE 900 EQLT T +Y+KSLGVICFNKNQA+LIEY+IDKQNNPLLNEWR+R N GEY GLFVKNIE Sbjct 841 EQLTTTNDYKKSLGVICFNKNQADLIEYLIDKQNNPLLNEWRERQNDVGEYEGLFVKNIE 900 Query 901 NVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNRASDYNGL 960 NVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNR DYNGL Sbjct 901 NVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQRIELFKTNRGEDYNGL 960 Query 961 SSNSLGSKLLVEYLLYCEAMANNQGESLDFQATQKQAPKAKYELELENQFFNELELIFGE 1020 SS+SLGSKLLVEYLLYCEAMA NQGE + FQA +++ KAKYEL +EN FFN+L+ IFG Sbjct 961 SSSSLGSKLLVEYLLYCEAMAKNQGEKITFQAVKRKETKAKYELAVENDFFNQLQAIFGG 1020 Query 1021 QFTIKRNVNEGAYSFSFVFYFNENPYLAVDFNPALPHSRKEVSENIIYREQFLKKRKWNL 1080 +F IKRNVNEGAY FSFVFYFN PYLA+DFN +P SRK+V E I+YREQFLKKR+WNL Sbjct 1021 EFEIKRNVNEGAYFFSFVFYFNNIPYLAIDFNIPIPTSRKQVMEGILYREQFLKKRQWNL 1080 Query 1081 VNIWLDEWKLNPGGVLQKLRNCLTHSENEFEEI 1113 +NIW+DEWKLNP GV+ K+R+ L +N+ EEI Sbjct 1081 INIWIDEWKLNPIGVISKIRSSLAVHQNQHEEI 1113 Lambda K H a alpha 0.320 0.136 0.393 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 141736897 Query= gi|13507893|ref|NP_109842.1| N-utilization substance protein A homolog; similar to Swiss-Prot Accession Number P32727, from B. subtilis [Mycoplasma pneumoniae M129] Length=540 Score E Sequences producing significant alignments: (Bits) Value gi|12044993|ref|NP_072803.1| N-utilization substance protein A (n... 697 0.0 >gi|12044993|ref|NP_072803.1| N-utilization substance protein A (nusA) [Mycoplasma genitalium G-37] Length=531 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/535 (66%), Positives = 424/535 (79%), Gaps = 30/535 (6%) Query 6 NHFTNPLLQLIKNVAETKNLAIDDVVLCLKTALAQTYKKHLNYVNVEVNIDFNKGLMQIE 65 N PLL +IKNVA+TKNL+I++VV CLKTAL Q YKKHLN+VNVEVNI+F+KG++ +E Sbjct 27 NELNQPLLAIIKNVAKTKNLSIEEVVFCLKTALEQAYKKHLNFVNVEVNINFDKGIINVE 86 Query 66 QLFDVVDDNNEDYDDFLEMPLSEAKKLNPNLEVGGVLRKPVSLKDIKGDLISKMVLLFNQ 125 QLF+VV D NEDYDDFLE+PL A K+N +L++G VLRKP+ LK+I DLI+KM+ +FNQ Sbjct 87 QLFNVVSDENEDYDDFLEIPLQAANKINSSLQLGDVLRKPIPLKNISSDLINKMIAIFNQ 146 Query 126 KINETAFKTVMSDFINEVGQVIEARVEDIDTNKDGGLKGYIVNLETTKGYMPKRELSKGE 185 KI+ET FK VMS+F +EVG+VIEA+VEDIDTNK+GGLKGYI+NLETTKGY+ KRELSKGE Sbjct 147 KISETNFKAVMSEFSSEVGEVIEAKVEDIDTNKEGGLKGYIINLETTKGYISKRELSKGE 206 Query 186 KLDIGKKYLFVIKEIQKQSSMWPITLSRSDSRLLEFLLNSNTPEIANGTIEIKKMERSPG 245 +L+IGKKYLFVIKEIQ+Q+S+WPITLSRSD+RLL+FLL SNTPEI NGTI IKK+ERSPG Sbjct 207 RLEIGKKYLFVIKEIQRQASLWPITLSRSDTRLLQFLLTSNTPEIENGTIVIKKIERSPG 266 Query 246 TKSKVAVISKDPVVDPIAAILGPKGERIRGISEEFNGEIIDIVIWNEDKLKFLVNAVLPA 305 KSK+AVIS DP VDP+AAILGPKGE+IRGISEEFNGEIIDIV WNEDKLKFL+NA+LPA Sbjct 267 VKSKIAVISNDPAVDPVAAILGPKGEKIRGISEEFNGEIIDIVFWNEDKLKFLINAILPA 326 Query 306 EVVGYNILQDDERDTSIEIVVPANQIANVFGFKGINIRLISNLTGWSSVDVYTEKDAAEQ 365 EV+GYNILQDDERDTSIE+VVPANQIANVFGFKG+NIRLISNLTGW+SVDVY+EKDA+E Sbjct 327 EVIGYNILQDDERDTSIEVVVPANQIANVFGFKGVNIRLISNLTGWNSVDVYSEKDASEA 386 Query 366 GIEFTRVNFQPQGIFGIKKRRDKISNNPRNNNQQLASDKVFYTSKANVVDDEIIVDLAKQ 425 I+FTR++F+P+G+FGIKKRR+KI +N A+DKVFYTSK NV+DDEIIVDLAK Sbjct 387 NIKFTRLSFEPEGLFGIKKRREKIISND-------ATDKVFYTSKDNVIDDEIIVDLAKD 439 Query 426 AEAKRVKQIKQEATKPELQLQQELNLEATPKVAAPTPTPAPQPTPAPTKVEPVPPPVSVT 485 KQ + E ++ + +L + TPK + E V P V Sbjct 440 LMVDN-KQKQPEQVAKQVVEKSQLEKQVTPK-----------------EKEKVQPKAKVH 481 Query 486 PKPIPKVNKPKPVVKPKSVFSITVEADDSKTKPEKSSAKTNTPQTKQTFDNFDDL 540 K KP KP +FSITV+A D K ++ PQTKQTFD+FDDL Sbjct 482 SNSHSK--KP---AKPNQIFSITVDASDKNLKKDQVDNNQTNPQTKQTFDSFDDL 531 Lambda K H a alpha 0.313 0.132 0.367 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 64927485 Query= gi|13507894|ref|NP_109843.1| protein synthesis initiation factor 2 [Mycoplasma pneumoniae M129] Length=617 Score E Sequences producing significant alignments: (Bits) Value gi|12044994|ref|NP_072804.1| translation initiation factor 2 (inf... 995 0.0 >gi|12044994|ref|NP_072804.1| translation initiation factor 2 (infB) [Mycoplasma genitalium G-37] Length=619 Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/613 (78%), Positives = 546/613 (89%), Gaps = 3/613 (0%) Query 5 KPRHF---QKNKFDNRAKTSAKQQFRQVKTGVKDGVFVYKGPLTVSEFCLKTNIPTANII 61 K R F +K KFD R KTSAK Q R VKTGVKDGVF+YKGPLTVSEF KTNI ANII Sbjct 3 KNRAFNQVKKTKFDGRIKTSAKHQLRNVKTGVKDGVFIYKGPLTVSEFASKTNIAVANII 62 Query 62 KHFFLNGVPLTLNSVLSTEQLADACVNFGFDFKVETEITHDNIISNIKFDDDPTQLSPRP 121 KHFFLNG+ LT+NSVL+ EQLADACVNFGFDFK+ETE+TH+NI++NI+F+D L PRP Sbjct 63 KHFFLNGLALTVNSVLTNEQLADACVNFGFDFKMETEVTHENIVANIQFEDSDDLLQPRP 122 Query 122 PIVTIMGHVDHGKTSLLDAIRQTNTAAKEFGGITQKIGAYQVKNQEGKTITFIDTPGHEA 181 PIVTIMGHVDHGKTSLLD IR+TN AKEFGGITQKIGAYQVKN + KTITFIDTPGHEA Sbjct 123 PIVTIMGHVDHGKTSLLDTIRKTNVTAKEFGGITQKIGAYQVKNHQNKTITFIDTPGHEA 182 Query 182 FTGMRARGAQVTDIVVLVVAGDDGLKQQTEEAISHAKSAKTPIIVFINKMDKPTANPDMV 241 FT MRARGA+VTDIVVLVVA DDG+K+QTEEAISHAKSA TPIIVFINKMDKPTANPD+V Sbjct 183 FTLMRARGAKVTDIVVLVVAADDGIKKQTEEAISHAKSANTPIIVFINKMDKPTANPDLV 242 Query 242 IQQLNKFDLVPEEWGGDTIFVKGSALTKEGIQELLDSILLVAEVEDYKANFNAHSSGYAI 301 IQQLNKFDLVPE WGG TIFV GSALT +GI ELLD+ILL+ EVE Y+AN+NAHSSGYAI Sbjct 243 IQQLNKFDLVPEAWGGKTIFVMGSALTGQGINELLDNILLLGEVEGYQANYNAHSSGYAI 302 Query 302 EVQTTKGLGPTATIIVKRGTLKIGDIVVLGPAWGKVRTMQDENGVHLQEAMPSKPVQISG 361 EVQT+KGLGP A +IVKRGTLK+GDIVVLGPA+G+VRTM DENG L++A PSKPVQISG Sbjct 303 EVQTSKGLGPIANVIVKRGTLKLGDIVVLGPAYGRVRTMHDENGNSLKQATPSKPVQISG 362 Query 362 FDIVPVAGEKFIVFDDEKDAKLIANKFREQQKQKLNTTQINEELKQKIKSKEIKVLNLIF 421 FDI+PVAGEKFIVFDDEKDAKLIANKF+EQQKQK N +N+ LK++IK+KEIK+LNLIF Sbjct 363 FDIMPVAGEKFIVFDDEKDAKLIANKFKEQQKQKANNLTVNQTLKEQIKNKEIKILNLIF 422 Query 422 KVDSDGSLAAIKQAMQSIDVPGMSVNIIHSGVGLISENDIMLAKASGALLFSLNLGLSQV 481 K DSDGSL AIKQA+++I+V +S++IIH+ VG ISE+DIMLAKASGALLFSLNLGLSQ Sbjct 423 KADSDGSLQAIKQAVENINVAKISLSIIHAAVGQISESDIMLAKASGALLFSLNLGLSQT 482 Query 482 VKNIASLQGVKVDVHYHIPKLAEEIENILKGQLEPVYEDVELGRAEVLQLWYHSKVGHIA 541 VKNIASLQGVK++VHYHIPKLAEEIENILKGQL+PVYE++E+G+AEVLQLW+HSK+G+IA Sbjct 483 VKNIASLQGVKLEVHYHIPKLAEEIENILKGQLDPVYEEIEIGKAEVLQLWFHSKIGNIA 542 Query 542 GTLVKTGKVKRGALCKLLRRNETIYEGRVDSLKSEKNPVNQMEAGKNCGIVINGCEDIQV 601 GT+VK+GK+KRG LCKL R E I+EGR+DSLK+EK PVN +E GKNCGIVINGC DI++ Sbjct 543 GTIVKSGKIKRGNLCKLFRDKEIIFEGRIDSLKNEKTPVNLIETGKNCGIVINGCNDIKI 602 Query 602 CDIILVYEKQEVK 614 DII+ YEKQ VK Sbjct 603 GDIIVAYEKQIVK 615 Lambda K H a alpha 0.316 0.134 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 75277445 Query= gi|13507895|ref|NP_109844.1| ribosome binding factor A [Mycoplasma pneumoniae M129] Length=116 Score E Sequences producing significant alignments: (Bits) Value gi|12044995|ref|NP_072805.1| ribosome-binding factor A, putative ... 167 5e-57 >gi|12044995|ref|NP_072805.1| ribosome-binding factor A, putative [Mycoplasma genitalium G-37] Length=112 Score = 167 bits (423), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 78/111 (70%), Positives = 95/111 (86%), Gaps = 0/111 (0%) Query 1 MASYKKERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQID 60 MASY+K+R+ENDIIRLINRT+I+EIY+ VK GHV+HVKLS D H VYLDCY+R QI Sbjct 1 MASYRKQRIENDIIRLINRTIINEIYDPVVKLGHVSHVKLSADFFHAVVYLDCYDRSQIQ 60 Query 61 RVVGAFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAMRIESIINSLK 111 VV AF +A+GVFS++LA NLYLAK+V++HFVKD AIDNA++IE IINSLK Sbjct 61 TVVNAFKKAQGVFSQMLAQNLYLAKSVKLHFVKDDAIDNALKIEQIINSLK 111 Lambda K H a alpha 0.321 0.135 0.376 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8225784 Query= gi|13507896|ref|NP_109845.1| hypothetical protein MPN157 [Mycoplasma pneumoniae M129] Length=402 Score E Sequences producing significant alignments: (Bits) Value gi|12044996|ref|NP_072806.1| hypothetical protein MG144 [Mycoplas... 213 1e-68 >gi|12044996|ref|NP_072806.1| hypothetical protein MG144 [Mycoplasma genitalium G-37] Length=279 Score = 213 bits (542), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 109/200 (55%), Positives = 148/200 (74%), Gaps = 8/200 (4%) Query 205 LPPGVKAEPESK-KRFGLFKAF-QKDDAKQPKQKLNLQDQQDRFIDDPTAKKHFSAFNQK 262 LPPGVK + ++K RF F +F KQP + +R +DDPT K FSAFN+K Sbjct 86 LPPGVKNQADNKTNRFSKFISFFTSSKNKQP------DEITERLVDDPTVKNRFSAFNKK 139 Query 263 VGNLLKDKKTRNRDWKIVGWIHGLILLFFIPLLAIMNKFVTLPAQSYPAVSLQVSINNAL 322 + +LKDKK R R WKIVG+ + +I+ FF LLA+MNKF+TL + YPA++LQ+ INNAL Sbjct 140 LIWVLKDKKLRARAWKIVGYTNLVIVAFFAGLLAVMNKFITLSSVEYPAIALQLPINNAL 199 Query 323 WGIAIFVIANIALPFITMFVLFLTGVRDVHASRPVHYFIWVLMLLNLTFLVISCCLLAAA 382 WGI+IFVI+ + LPF TMF+LFL GV+DV SR +HYFIW+++++N+ L++SC L+ AA Sbjct 200 WGISIFVISIVTLPFWTMFILFLMGVKDVRTSRSIHYFIWIVLIINVVLLLVSCLLMIAA 259 Query 383 YANLDLYNIWRNLQALDPNN 402 YA+LD YNIWRNL++L+PNN Sbjct 260 YAHLDGYNIWRNLESLNPNN 279 Lambda K H a alpha 0.316 0.135 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 46556730 Query= gi|13507897|ref|NP_109846.1| riboflavin kinase (EC 2.7.1.26) (flavokinase)/FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase); bifunctional [Mycoplasma pneumoniae M129] Length=269 Score E Sequences producing significant alignments: (Bits) Value gi|12044997|ref|NP_072807.1| riboflavin kinase/ FMN adenylyltrans... 241 9e-82 >gi|12044997|ref|NP_072807.1| riboflavin kinase/ FMN adenylyltransferase, putative [Mycoplasma genitalium G-37] Length=269 Score = 241 bits (616), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 114/262 (44%), Positives = 174/262 (66%), Gaps = 2/262 (1%) Query 3 QTLIIGAFDGLHKGHQLLAQAASGPVVALLIANIPSLQSDWLYEPKQRQVQLQQHFQSVV 62 ++L IG FDGLH+GH L Q + + LLI N P Q++WLY+ +QR Q++ + ++ V Sbjct 2 KSLFIGYFDGLHQGHLFLKQNSKFEPMVLLIDNPPLKQTNWLYDLQQRVAQIKTYLKATV 61 Query 63 HSYDVIEHNISAQAFFDQIISPLRCQQLVVGADFCFGKDNQNADFLRRLFPNTTIIPKDS 122 +DV +HN++A +FF+Q I L C +++VG D+ FG D+++ +L++LF NT I+ K + Sbjct 62 EVFDVAKHNMNALSFFEQQIKRLNCDEIIVGTDWHFGNDHKDGIWLKKLFKNTVIVNKTN 121 Query 123 QTLSSSTIRQWLKQGQIEQANAVLLEPYFREGVVIRGNQQARFLGWPTANITLKPYMVPL 182 LSSS IR +L ++E+AN +L+EPY+R G V+ G ++AR LG+PTANI + +++ L Sbjct 122 --LSSSVIRNYLTNNELEKANQLLVEPYYRVGTVVHGLKKARLLGFPTANIVMDNHLLTL 179 Query 183 RCGSYVITVTYHQTNYPGVGFISYKNDQLVCETHLIGFSGDLYGKQLRFTFNQFIRPQQK 242 GSY++ V + + G+GFIS K+ LVCETH+ F+ ++YG ++FT +FIR K Sbjct 180 NKGSYIVRVLLNNQTFYGIGFISQKDQDLVCETHIFNFNNEIYGSLVKFTLLKFIRTISK 239 Query 243 FSGVQALQKAISGDLKQAQKWF 264 FS ALQKAI D A KW Sbjct 240 FSSQAALQKAIQSDANFALKWL 261 Lambda K H a alpha 0.323 0.137 0.414 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28506600 Query= gi|13507898|ref|NP_109847.1| tlyC homolog, hemolysin activity doubtful [Mycoplasma pneumoniae M129] Length=424 Score E Sequences producing significant alignments: (Bits) Value gi|12044998|ref|NP_072808.1| hypothetical protein MG146 [Mycoplas... 616 0.0 >gi|12044998|ref|NP_072808.1| hypothetical protein MG146 [Mycoplasma genitalium G-37] Length=424 Score = 616 bits (1589), Expect = 0.0, Method: Compositional matrix adjust. Identities = 293/423 (69%), Positives = 352/423 (83%), Gaps = 0/423 (0%) Query 1 MESAPSGGLLALIIISIILLACISAVVSAYETAITSITSYKWSNYVKTHNKQKKLTTKIV 60 M+SAPSG L +II+SIILLA IS VVSAYETAITS+T Y+W NY+KT+NKQ KL+TKI+ Sbjct 1 MDSAPSGLTLTVIILSIILLAFISTVVSAYETAITSLTPYRWKNYIKTNNKQDKLSTKII 60 Query 61 NHFQKNYSACLITILVANNIVAILVSNILFLALDQSIKNPAISSALNLLISGVLLLMLCE 120 NHFQ +YS+CLITIL+ NNIVAI+VSNILFLAL+Q+IKN +SS LNL++SGVL++ CE Sbjct 61 NHFQNHYSSCLITILITNNIVAIMVSNILFLALEQTIKNELLSSVLNLVVSGVLIVSFCE 120 Query 121 ITPKTLARINIIRVLVYFAVVVYFFYILFWPITKLASIIFAKYEKAPPVSRRDVYFFIDE 180 I PKTL RIN+IR LV FA +VYFFY++FWPITKL S+I KYE PVSR+DVY+FIDE Sbjct 121 ILPKTLGRINVIRTLVLFAYLVYFFYLIFWPITKLTSLILKKYENPLPVSRKDVYYFIDE 180 Query 181 IEQNGLFTKEDGQLIKRTLIFDQVLVDQIMIKWNRVVYCYEGDPVKTIKEKFLHGQFSRM 240 IEQNGLF+KED LIK+TLIFDQVLV ++MIKW +V YCY D + I ++FL QFSRM Sbjct 181 IEQNGLFSKEDSLLIKKTLIFDQVLVKKVMIKWKKVAYCYLNDSINLIAKQFLQRQFSRM 240 Query 241 PVLDQTSNEVVGFIHLKDLFSSLEKSNEPFVLQELLYPAVLVSNTTPIKQALRQMRLHRA 300 PV+D+T+N++VGFIHLKD F++ E + + L +LLYP VLV ++TPIKQALRQMRL+RA Sbjct 241 PVVDKTTNKIVGFIHLKDFFTAKEANPKSLDLNQLLYPVVLVQDSTPIKQALRQMRLNRA 300 Query 301 HLAVVQDKHHHTIGIVSMEDIIEELVGEIYDEHDEVEAVQTLDNNTWLVLPNVKAAFFFN 360 HLAVV DKH TIGIVSMEDIIEELVGEIYDEHD+++ +Q LD N WLVLPNVKAA+FFN Sbjct 301 HLAVVNDKHEKTIGIVSMEDIIEELVGEIYDEHDDIQPIQVLDENVWLVLPNVKAAYFFN 360 Query 361 KWIKRDLVKSKNMTIQRYLASFENDGLNTQNKLETPWFIAEAIVDSENPEQIRYEIRKKS 420 KWIK DLVKSKN+TIQ YLAS +ND QNKL+TP F E I DSE+ +I YEIRKKS Sbjct 361 KWIKPDLVKSKNITIQHYLASLDNDSFACQNKLDTPLFSVEVIADSEDKTKILYEIRKKS 420 Query 421 DVV 423 DV+ Sbjct 421 DVI 423 Lambda K H a alpha 0.323 0.137 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 49349547 Query= gi|13507899|ref|NP_109848.1| hypothetical protein MPN160 [Mycoplasma pneumoniae M129] Length=377 Score E Sequences producing significant alignments: (Bits) Value gi|12044999|ref|NP_072809.1| hypothetical protein MG147 [Mycoplas... 464 5e-166 >gi|12044999|ref|NP_072809.1| hypothetical protein MG147 [Mycoplasma genitalium G-37] Length=375 Score = 464 bits (1194), Expect = 5e-166, Method: Compositional matrix adjust. Identities = 239/367 (65%), Positives = 301/367 (82%), Gaps = 4/367 (1%) Query 12 KTNKQSRLLWLLAIPLLISLTLLTYGLVLFSSSGRIDHGDHFHLRERFVLTTEELVTFVV 71 KTNK + L LL IPLL+ LTL+ YG+VLFS+ G IDHGDH HLR RF LT EE++ FVV Sbjct 12 KTNKNCKALLLLLIPLLVGLTLIIYGIVLFSTEGVIDHGDHNHLRARFQLTLEEIIVFVV 71 Query 72 ASVVFALTVALFGLGCWKLLQGPKVDRTNIKLAN-SNPAPQAVVLQADCDHFQVGDHCVF 130 S++ T+A F + C+ L++ PK + + AN +N P+A+V +CD FQ+GD+CVF Sbjct 72 GSIILFFTLASFCVSCFMLMRSPKQKQLEVDHANKTNLKPKAIV---NCDLFQLGDYCVF 128 Query 131 SAEKQHFKQQFKQDFLGKSKFSFRNELYRFCLIGVLISLNLALSMVEIPGIVLPWGSSIQ 190 + +K FKQ+FKQDF +SKFSFR+ELYR CL+GVLI+LNLALS++EIPGIVLPWGSSIQ Sbjct 129 TFKKLSFKQRFKQDFFARSKFSFRSELYRLCLVGVLIALNLALSLIEIPGIVLPWGSSIQ 188 Query 191 FRFFNTAILFIAIRFVGLLSTSLIAIITPWIHLLLHPVHTPISTVFYMGNDLVVLWIFYF 250 FRFFNTAILFIA+R VGLLSTSL+A+ITPW+HLL+HP+HTPIS++FYM ND +VLWIFYF Sbjct 189 FRFFNTAILFIAVRLVGLLSTSLVALITPWLHLLIHPIHTPISSLFYMVNDFLVLWIFYF 248 Query 251 FYYHIFKAEVKQTTTVVNNKEFSQLVNTHKTKVAKALALIPVNLICGFIEGLGFYVGYFL 310 F++H+FKAEV QTTTVV+NK FSQLVNT KTK K +L+ ++ +CGFIEGLGFY GYFL Sbjct 249 FFFHLFKAEVNQTTTVVDNKPFSQLVNTKKTKWTKFFSLLVISFLCGFIEGLGFYFGYFL 308 Query 311 ILGKFGSVGHKIFYDSQANRDLINSANVIYFLLTTTTIFSLKYLFELLFFYSVEKGILNI 370 ILG S+G KI+YD RDLINS+NV++FL+TTT IFS+KY+FE+LFF+SVEK ++NI Sbjct 309 ILGNVSSLGLKIYYDGLQQRDLINSSNVLFFLMTTTAIFSIKYIFEMLFFFSVEKNVVNI 368 Query 371 SRHFGLY 377 + HFGLY Sbjct 369 ANHFGLY 375 Lambda K H a alpha 0.330 0.144 0.442 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 43029705 Query= gi|13507900|ref|NP_109849.1| hypothetical protein MPN161 [Mycoplasma pneumoniae M129] Length=445 Score E Sequences producing significant alignments: (Bits) Value gi|12045000|ref|NP_072810.1| hypothetical protein MG148 [Mycoplas... 312 7e-105 >gi|12045000|ref|NP_072810.1| hypothetical protein MG148 [Mycoplasma genitalium G-37] Length=409 Score = 312 bits (800), Expect = 7e-105, Method: Compositional matrix adjust. Identities = 191/447 (43%), Positives = 270/447 (60%), Gaps = 50/447 (11%) Query 4 VKYLQVEIVDKNTIRLQEDGKKGQQIRLDQIIKVDQSNILNTLEQAQREAYEREAQSRYQ 63 +KY++V+I++K+TI L ED KKG++I LD I +VDQ+NILNT+ Q+ A+E+E ++ Sbjct 1 MKYVKVQIINKSTIELLEDAKKGEKINLDLINQVDQTNILNTITTNQKLAWEKELSAQ-- 58 Query 64 TKLAKELSEKDNTFLKQKAAWNQAHNTQIQQLYQQITNLENQVNN----IKRETESKKDN 119 F+ Q N I+ +I L+ +N+ + +T+ + N Sbjct 59 -------------FINQ-------QNELIKNFEIEIIKLKTMLNDKEQALLLKTKLELQN 98 Query 120 EYQQQIVKLETQLQSIKKETESQKDLEYERKANKTKEENQQELER----QRQYFLEQLEQ 175 ++Q+QI E + I K + K+LE NQ++LE QR F E++ Q Sbjct 99 QFQKQI---ENYINEINKLKLTNKELEIT---------NQKQLESSLKLQRNEFEEKINQ 146 Query 176 AQKDIEELKTREERFSKWAIAKKGKELEKWCWEAYKNYEELFQNCVFAPYSELVKGAKKS 235 IE+LK ++ R S WA+AKKG ELEKWC Y++Y + F+NC F Y K Sbjct 147 QNLTIEKLKIQQARSSIWAVAKKGNELEKWCENQYESYADSFENCQFTRY-------KTE 199 Query 236 IGVEDDESNINEKADFIFQVFNPNNDKEPFFSICCEMKTEFTESKSRTKNEDHVKKLIAD 295 I + D+ NEKAD+IF F +K PF SICCEMK+EF +SK ++KN+DH+ KL+ D Sbjct 200 INLLDENDFPNEKADYIFSFFGEKTNKIPFLSICCEMKSEFNDSKHKSKNKDHISKLVRD 259 Query 296 AKRAKCQYGFLVSELELNTENDVQVQRMHTSNSEVEVYLVRPMFFIVMLRLFYFLAKKMF 355 AKRA C+Y FL+SELEL TEND+QV+ M T S VEVYLVRPMFFI+ML+LFY LAKK+F Sbjct 260 AKRANCKYAFLISELELETENDIQVRLMPTLESGVEVYLVRPMFFILMLKLFYKLAKKLF 319 Query 356 AQVDVNS-EYLDKEALNASFSDLKKSLLEKTFTDLNKVFQNNIDELEKIEGLVTKLKAAN 414 A S E +DK LN F LK + L KTF ++ KV ++N+ ++E +E V KL+ N Sbjct 320 ALNRFQSVELIDKNKLNEQFKQLKDNFLTKTFLEIEKVCKSNLVDIETLEKAVVKLRVRN 379 Query 415 EKALNSRLNNWEEKIRKFEFKLNKDIV 441 E+ L+ LN W +KI F+ +L K I Sbjct 380 ERVLDQLLNKWTKKIDSFDLQLTKKIT 406 Lambda K H a alpha 0.312 0.128 0.346 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 52302084 Query= gi|13507901|ref|NP_109850.1| hypothetical protein MPN162 [Mycoplasma pneumoniae M129] Length=320 Score E Sequences producing significant alignments: (Bits) Value gi|12045001|ref|NP_072811.1| lipoprotein, putative [Mycoplasma ge... 154 1e-46 >gi|12045001|ref|NP_072811.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=281 Score = 154 bits (388), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/313 (39%), Positives = 159/313 (51%), Gaps = 42/313 (13%) Query 1 MKLNLRFPSYFLPVVAASAFLVSCATPNTYEVQRAALIQLVEEDERQNYIQKGSMGANAV 60 MKL + LP + S L SCA+ NTY+ QR ALI L + ++ ANA Sbjct 1 MKLYRSLKAALLPGICTSILLASCASTNTYQDQRNALISLAS--------NRDTLIANA- 51 Query 61 MTAAKAETKTAEKTATSTKAASIELKKTDTDIKTTTTTENKSASGYKLDTLFGDYILWVV 120 +K E + E T ++ +S+ I T TTE + S Y LD LF DYIL+VV Sbjct 52 -KKSKEEVQ-KEVTKMNSSTSSMMTATQSVAITTHQTTEKTNNSKYDLDKLFKDYILYVV 109 Query 121 DHLSGLLFSPKTNNSTTTQKIQLITEDKMILDGGNLTVEKNHEHGHTHKNGETHEHDHDH 180 D+ SGL+F T +IQLI +DK ILDGGNLT H H + +H Sbjct 110 DNFSGLVFKR-----TGGHRIQLIDKDKEILDGGNLT---KHTHHDHNHMHNHEHEHEEH 161 Query 181 HEGEEEVIVGRALSFANGLFLVVDLKEEKHEEKKEAKSEMSMNSKDMVMMTKTEMMSKEM 240 H+ EE +VGRALSF NG+FLV+D K K E+K M T MM + Sbjct 162 HDEEETEVVGRALSFTNGIFLVIDYK--KDSERKN-------------MSGSTTMMHQHH 206 Query 241 KSEQKMEKKEEHEHPHKKLSLSTTAYKFGQSFNILEFTGAMHHKTAHNNETEFKNLGKKY 300 ++ + +KLSL+ AYKF FNI EF A HHK +HN++TEF NL KY Sbjct 207 HEAEEHK-------EERKLSLNLKAYKFNTPFNISEFISAWHHKESHNSDTEFNNLHNKY 259 Query 301 GGMTEYTIVDFDF 313 E I+D++F Sbjct 260 DK-EELDIIDYNF 271 Lambda K H a alpha 0.310 0.125 0.346 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35512250 Query= gi|13507902|ref|NP_109851.1| hypothetical protein MPN163 [Mycoplasma pneumoniae M129] Length=112 Score E Sequences producing significant alignments: (Bits) Value gi|12045002|ref|NP_072812.1| hypothetical protein MG149.1 [Mycopl... 119 1e-37 >gi|12045002|ref|NP_072812.1| hypothetical protein MG149.1 [Mycoplasma genitalium G-37] Length=137 Score = 119 bits (297), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 76/112 (68%), Positives = 92/112 (82%), Gaps = 0/112 (0%) Query 1 MIDRFFWSILSFLLTNLVFLFVAFLILIIYLISEITQQFAFAFIATIVFIIFYNILFLSY 60 +I RFFWSILSFL+TNL+F F AF+ L+IYL++ + QFAF FIA I+FIIFYNI FLSY Sbjct 26 IISRFFWSILSFLITNLIFFFAAFVALLIYLLASVDNQFAFVFIAAIIFIIFYNIFFLSY 85 Query 61 LLTMYIKGLKQIEQKSRYLLLVLDVKADELLPFSFLGSLRKSHMLEEMLLEQ 112 LL +Y KG K IE +YLL +LD+K+DELLPFS LGSLRK +ML+EMLLEQ Sbjct 86 LLFIYFKGQKAIENNCKYLLTILDIKSDELLPFSLLGSLRKGYMLDEMLLEQ 137 Lambda K H a alpha 0.339 0.151 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7638228 Query= gi|13507903|ref|NP_109852.1| ribosomal protein S10 [Mycoplasma pneumoniae M129] Length=108 Score E Sequences producing significant alignments: (Bits) Value gi|12045003|ref|NP_072813.1| ribosomal protein S10 (rpS10) [Mycop... 193 1e-67 >gi|12045003|ref|NP_072813.1| ribosomal protein S10 (rpS10) [Mycoplasma genitalium G-37] Length=106 Score = 193 bits (490), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 99/108 (92%), Positives = 103/108 (95%), Gaps = 2/108 (2%) Query 1 MNAANAVKYPELKIKLESYDSTLLDLTTKKIVEVVKGVDVKIKGPLPLPTKKEVITIIRS 60 MN+A VKYPELKIKLESYDSTLLDLT KKIVEVVKGV++KIKGPLPLPTKKEVITIIRS Sbjct 1 MNSA--VKYPELKIKLESYDSTLLDLTIKKIVEVVKGVNIKIKGPLPLPTKKEVITIIRS 58 Query 61 PHVDKASREQFEKNRHKRLMILVDVNQGAIDSLKRIKIPVGVTLRFSK 108 PHVDKASREQFEKN HKRLMILVDVNQG IDSLK+IKIPVGVTLRFSK Sbjct 59 PHVDKASREQFEKNTHKRLMILVDVNQGGIDSLKKIKIPVGVTLRFSK 106 Lambda K H a alpha 0.317 0.135 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7221277 Query= gi|13507904|ref|NP_109853.1| ribosomal protein L3 [Mycoplasma pneumoniae M129] Length=287 Score E Sequences producing significant alignments: (Bits) Value gi|12045004|ref|NP_072814.1| ribosomal protein L3 (rpL3) [Mycopla... 387 7e-139 >gi|12045004|ref|NP_072814.1| ribosomal protein L3 (rpL3) [Mycoplasma genitalium G-37] Length=257 Score = 387 bits (993), Expect = 7e-139, Method: Compositional matrix adjust. Identities = 183/241 (76%), Positives = 213/241 (88%), Gaps = 0/241 (0%) Query 1 MEIRGIFGVKVGMSQVFTTNNERLPITVIYCEPNQVAGVKTEAKDKYSATLLSFDTVENK 60 M++RGIFGVKVGMSQ+FT NE LPIT++YCE NQVAG+KT AKD Y+ATLLSF TV+ K Sbjct 1 MDVRGIFGVKVGMSQIFTEQNECLPITIVYCEANQVAGIKTIAKDNYNATLLSFQTVDEK 60 Query 61 KLNKPQQGFFEKNNLKPTKHLQEIRNMTGFEMGQQITPQNLFQVGEYVDVSAISKGRGFT 120 +LNKP+QGFF K L+P K+L+EIR M GFE+G++ITPQ LF++GEYVDV++++KGRGFT Sbjct 61 QLNKPKQGFFSKLKLEPHKYLREIRKMQGFELGKKITPQELFKIGEYVDVTSLTKGRGFT 120 Query 121 GAIKRWNFKIGPLGHGAGYPHRFQGSVQAGRGGASAQRVFKGKKMSGHYGHEKVTVQNLR 180 GAIKRWNFKIGPLGHGAGYPHRFQGSVQAGRGG+SAQRVFKGKKMSGHYGHE+VT+QNL Sbjct 121 GAIKRWNFKIGPLGHGAGYPHRFQGSVQAGRGGSSAQRVFKGKKMSGHYGHEQVTIQNLF 180 Query 181 IVGFDEANMLVLVSGAIAGPEGGVVLIRTAKKKPGVVKPIELAVQTEKAPEAKPAKLSKK 240 IVGFDE N LVLVSGAIAGPEGG+VLI+TAKKK G +K I+LAVQT KAP+ K K K Sbjct 181 IVGFDEINKLVLVSGAIAGPEGGIVLIKTAKKKTGKIKDIKLAVQTVKAPQLKAPKKQKT 240 Query 241 K 241 K Sbjct 241 K 241 Lambda K H a alpha 0.313 0.132 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31072194 Query= gi|13507905|ref|NP_109854.1| ribosomal protein L4 [Mycoplasma pneumoniae M129] Length=212 Score E Sequences producing significant alignments: (Bits) Value gi|12045005|ref|NP_072815.1| ribosomal protein L4 (rpL4) [Mycopla... 246 3e-85 >gi|12045005|ref|NP_072815.1| ribosomal protein L4 (rpL4) [Mycoplasma genitalium G-37] Length=211 Score = 246 bits (628), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 121/212 (57%), Positives = 162/212 (76%), Gaps = 1/212 (0%) Query 1 MAKLKLIKIDGSFETEPVKLSPGLIAKELKQQPVFDAVLVEQASWRQGTHSILTKGEVRG 60 MAKLK+I+ DGSF+ E ++ + L+ K+ QPVFDA+L+EQA+ RQGTHS LTKGEV G Sbjct 1 MAKLKVIQFDGSFKGE-IQPANHLLLKKAVIQPVFDAILLEQAACRQGTHSTLTKGEVSG 59 Query 61 GGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPNRNYSLKLNKKAHTAALHTVWSEKL 120 GGKKPYKQKHTGKARQGS RNPH+VGGG+VFGPKPNRNY LKLNKKA+ AL + +++KL Sbjct 60 GGKKPYKQKHTGKARQGSIRNPHYVGGGVVFGPKPNRNYKLKLNKKAYQLALTSAFAQKL 119 Query 121 ASDNTHLVDQNLFNKTEGKTKVMMQFLKSAKLLDKNVLFVVNTLNTNLEQSTSNIKNVQV 180 ++ + + LF +T KTK M+ FLK+AKL ++ +LFV++T++ L ST+N+K + V Sbjct 120 NNNQVIVAEAKLFEQTNAKTKKMLTFLKNAKLTEQKLLFVIDTISKPLLLSTNNLKQIVV 179 Query 181 KHLDKVSVRDLMLANALLVEKEVLKALEGKFK 212 K +KVSVRDL+LA +++EK LE + K Sbjct 180 KQFNKVSVRDLLLAKTIIIEKAAFTKLEERLK 211 Lambda K H a alpha 0.314 0.131 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20807645 Query= gi|13507906|ref|NP_109855.1| ribosomal protein L23 [Mycoplasma pneumoniae M129] Length=237 Score E Sequences producing significant alignments: (Bits) Value gi|12045006|ref|NP_072816.1| ribosomal protein L23 (rpL23) [Mycop... 163 1e-53 >gi|12045006|ref|NP_072816.1| ribosomal protein L23 (rpL23) [Mycoplasma genitalium G-37] Length=106 Score = 163 bits (413), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 73/96 (76%), Positives = 87/96 (91%), Gaps = 0/96 (0%) Query 1 MDVTNVLLKPVLTEKVYFNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIR 60 MDVTN+LLKPVLTEK Y NQMGE KKYVF +NPKA+KT+VKLAFE++YG+KPLK+NTLIR Sbjct 1 MDVTNILLKPVLTEKSYLNQMGELKKYVFAINPKATKTKVKLAFEIIYGVKPLKINTLIR 60 Query 61 KPTTIRGGSRFPGLSKLEKLAVITLPKGIAISVTGE 96 KP TIR G+++PG SKL KLAVITLPKG+ I++TGE Sbjct 61 KPVTIRNGTKYPGFSKLAKLAVITLPKGMDIAITGE 96 Lambda K H a alpha 0.305 0.121 0.308 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24169873 Query= gi|13507907|ref|NP_109856.1| ribosomal protein L2 [Mycoplasma pneumoniae M129] Length=287 Score E Sequences producing significant alignments: (Bits) Value gi|12045007|ref|NP_072817.1| ribosomal protein L2 (rpL2) [Mycopla... 516 0.0 >gi|12045007|ref|NP_072817.1| ribosomal protein L2 (rpL2) [Mycoplasma genitalium G-37] Length=285 Score = 516 bits (1329), Expect = 0.0, Method: Compositional matrix adjust. Identities = 250/287 (87%), Positives = 272/287 (95%), Gaps = 2/287 (1%) Query 1 MPIKKIISRSNSGIHHSTVIDYKKLLTTNKNKPEKSLLVTLKKHGGRNNQGKITVRHQGG 60 M IKKIISRSNSGIH++TVID+KKLLT +K PEKSLLVTLKKH GRNNQGKITVRH GG Sbjct 1 MAIKKIISRSNSGIHNATVIDFKKLLTNSK--PEKSLLVTLKKHAGRNNQGKITVRHHGG 58 Query 61 RNKRKYRIIDFKRTHYDNIEATVKSIEYDPNRSCFVSLITYANGAKSYIISPDGIKVGDK 120 R+KRKYR+IDFKR HYDN++ATVKSIEYDPNRSCF+SL+ Y NG K+YIISPDGIKVGD+ Sbjct 59 RHKRKYRLIDFKRYHYDNLKATVKSIEYDPNRSCFISLLHYQNGVKTYIISPDGIKVGDQ 118 Query 121 ILASEHPIDIKPGFSMPLAFIPEGTQVHNIELHPKGGGQIARSAGSYARILGQDETGKYV 180 + +S+H IDIK G+ MPLAFIPEGTQVHNIEL+PKGGG+IARSAGSYARILGQDETGKY+ Sbjct 119 VYSSDHAIDIKLGYCMPLAFIPEGTQVHNIELNPKGGGKIARSAGSYARILGQDETGKYI 178 Query 181 ILQLLSGETRKFLKECRATVGVVSNLDHNLVVIGKAGRNRHRGIRPTVRGSAMNPNDHPH 240 ILQL+SGETRKFLKECRATVGVVSNLDHNLVVIGKAGR+RH+GIRPTVRGSAMNPNDHPH Sbjct 179 ILQLISGETRKFLKECRATVGVVSNLDHNLVVIGKAGRSRHKGIRPTVRGSAMNPNDHPH 238 Query 241 GGGEGRSPVGRDAPRTPWGKRHMGVKTRNMKKASTNLIIRNRKGEQY 287 GGGEGRSPVGRDAPRTPWGKRHMGVKTRNMKK STNLIIRNRKGEQY Sbjct 239 GGGEGRSPVGRDAPRTPWGKRHMGVKTRNMKKHSTNLIIRNRKGEQY 285 Lambda K H a alpha 0.317 0.136 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31072194 Query= gi|13507908|ref|NP_109857.1| ribosomal protein S19 [Mycoplasma pneumoniae M129] Length=87 Score E Sequences producing significant alignments: (Bits) Value gi|12045008|ref|NP_072818.1| ribosomal protein S19 (rpS19) [Mycop... 174 9e-61 >gi|12045008|ref|NP_072818.1| ribosomal protein S19 (rpS19) [Mycoplasma genitalium G-37] Length=87 Score = 174 bits (441), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 82/87 (94%), Positives = 86/87 (99%), Gaps = 0/87 (0%) Query 1 MSRSAKKGAFVDAHLLKKVIDMNKQEKKRPIKTWSRRSTIFPEFVGNTFAVHNGKTFINV 60 MSRS+KKGAFVDAHLLKKVI+MNKQ KK+PIKTWSRRSTIFPEFVGNTF+VHNGKTFINV Sbjct 1 MSRSSKKGAFVDAHLLKKVIEMNKQAKKKPIKTWSRRSTIFPEFVGNTFSVHNGKTFINV 60 Query 61 YVTDDMVGHKLGEFSPTRNFKQHTANR 87 YVTDDMVGHKLGEFSPTRNFKQHTANR Sbjct 61 YVTDDMVGHKLGEFSPTRNFKQHTANR 87 Lambda K H a alpha 0.320 0.133 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4613575 Query= gi|13507909|ref|NP_109858.1| ribosomal protein L22 [Mycoplasma pneumoniae M129] Length=184 Score E Sequences producing significant alignments: (Bits) Value gi|12045009|ref|NP_072819.1| ribosomal protein L22 (rpL22) [Mycop... 221 6e-77 >gi|12045009|ref|NP_072819.1| ribosomal protein L22 (rpL22) [Mycoplasma genitalium G-37] Length=144 Score = 221 bits (564), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 106/132 (80%), Positives = 116/132 (88%), Gaps = 0/132 (0%) Query 26 MIAFAKQFRVRISPQKARLVCQLIVGKKTADAQNILSNTPKKAATLIAKLLNSAIANATN 85 MIAFAKQ+RV ISPQKARLVCQLIVGKK DAQNIL NTPKKAA + KLLNSAI+NATN Sbjct 1 MIAFAKQYRVHISPQKARLVCQLIVGKKINDAQNILLNTPKKAAYFLTKLLNSAISNATN 60 Query 86 NHGMNGDALYVFECVANQGPSMKRTIPRAKGSSNMITKRSSNLVVKLSDNPNERQELIKQ 145 NHGM+GD LYVFECVANQGPSMKRTI RAKGS +++TKRSSNLV+KLSDNPNER+ L+ Q Sbjct 61 NHGMSGDLLYVFECVANQGPSMKRTIARAKGSGSVLTKRSSNLVIKLSDNPNERKLLLTQ 120 Query 146 QKALVKKRVEGQ 157 QK LVKKR G Sbjct 121 QKELVKKRTMGH 132 Lambda K H a alpha 0.312 0.123 0.339 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17191811 Query= gi|13507910|ref|NP_109859.1| ribosomal protein S3 [Mycoplasma pneumoniae M129] Length=273 Score E Sequences producing significant alignments: (Bits) Value gi|12045010|ref|NP_072820.1| ribosomal protein S3 (rpS3) [Mycopla... 444 1e-161 >gi|12045010|ref|NP_072820.1| ribosomal protein S3 (rpS3) [Mycoplasma genitalium G-37] Length=268 Score = 444 bits (1143), Expect = 1e-161, Method: Compositional matrix adjust. Identities = 217/269 (81%), Positives = 239/269 (89%), Gaps = 4/269 (1%) Query 1 MGQKVNSNGLRFGINKNWISRWTANSHAQTAKWLIEDEKIRNLFFVNYRNAQVSNVEIER 60 MGQKVNSNGLRFGINKNWISRWTA+S+ QTA WL++DEKIRNLFF+NYRNAQVSNVEIER Sbjct 1 MGQKVNSNGLRFGINKNWISRWTASSNQQTATWLVQDEKIRNLFFINYRNAQVSNVEIER 60 Query 61 TQATVDVFVYAAQPAFLIGSENKNIQKITKQIKQIIGRTTNLDLTINEIGSPMLSARIIA 120 TQ TVDV+VYAAQPA LIGSENKNIQKITK I+ I+GR LDLTINEIGSPMLS+RIIA Sbjct 61 TQTTVDVYVYAAQPALLIGSENKNIQKITKMIQIIVGRKIKLDLTINEIGSPMLSSRIIA 120 Query 121 RDLANAIEARVPLRTAMRQSLIKVLKAGANGIKVLVSGRLNGAEIARDKMYIEGNMPLST 180 RD+ANAIE RVPLR+AMRQ+L KVLKAGANGIKVLVSGRLNGAEIARDKMYIEGNMPLST Sbjct 121 RDIANAIENRVPLRSAMRQALTKVLKAGANGIKVLVSGRLNGAEIARDKMYIEGNMPLST 180 Query 181 LRADIDYALEKAQTTYGVIGVKVWINRGMIYTKGLNRTPAHILHPQKKQPNRQNQQPRHF 240 LRADIDYA EKA+TTYG+IGVKVWINRGMIY KGLNRTPAHILHPQKKQ + P Sbjct 181 LRADIDYAFEKAKTTYGIIGVKVWINRGMIYAKGLNRTPAHILHPQKKQL----KTPTIK 236 Query 241 NQGQVLSANKLTGSDVETSSIQALTKPNK 269 V++ KLTGSD+ET+S++ALT N+ Sbjct 237 KTNSVIAKQKLTGSDIETASLKALTDNNQ 265 Lambda K H a alpha 0.316 0.131 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29076732 Query= gi|13507911|ref|NP_109860.1| ribosomal protein L16 [Mycoplasma pneumoniae M129] Length=139 Score E Sequences producing significant alignments: (Bits) Value gi|12045011|ref|NP_072821.1| ribosomal protein L16 (rpL16) [Mycop... 269 1e-96 >gi|12045011|ref|NP_072821.1| ribosomal protein L16 (rpL16) [Mycoplasma genitalium G-37] Length=138 Score = 269 bits (687), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 128/138 (93%), Positives = 133/138 (96%), Gaps = 0/138 (0%) Query 1 MLQPKRTKYRKPHNVSYEGKAKGNSYVAFGEYGLVATKGNWIDARAIESARIAISKCLGK 60 MLQPKRTKYRKPHNVSYEG KGN YVAFGEYG+VATKGNWIDARAIESAR+AISKCLGK Sbjct 1 MLQPKRTKYRKPHNVSYEGHTKGNGYVAFGEYGIVATKGNWIDARAIESARVAISKCLGK 60 Query 61 TGKMWIRIFPHMSKTKKPLEVRMGSGKGNPEFWVAVVKQGTVMFEVANIPESQMIKALTR 120 TGKMWIRIFPHMSKTKKPLEVRMGSGKGNPEFWVAVVK+GTVMFEVANIPE QMIKALTR Sbjct 61 TGKMWIRIFPHMSKTKKPLEVRMGSGKGNPEFWVAVVKKGTVMFEVANIPEQQMIKALTR 120 Query 121 AGHKLPVTWKILKREEVS 138 AGHKLPVTWK++KREE S Sbjct 121 AGHKLPVTWKLMKREENS 138 Lambda K H a alpha 0.318 0.132 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11235917 Query= gi|13507912|ref|NP_109861.1| ribosomal protein L29 [Mycoplasma pneumoniae M129] Length=111 Score E Sequences producing significant alignments: (Bits) Value gi|12045012|ref|NP_072822.1| ribosomal protein L29 (rpL29) [Mycop... 153 2e-50 >gi|12045012|ref|NP_072822.1| ribosomal protein L29 (rpL29) [Mycoplasma genitalium G-37] Length=200 Score = 153 bits (386), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 73/91 (80%), Positives = 83/91 (91%), Gaps = 0/91 (0%) Query 1 MTVAKELRQKSSEELVKLVIKLKGELLEYRFKLAHGELDKPHLINQTRRLLATILTILTE 60 MT+AKEL+QKS+EELVKLVIKLKGELLEYRFKLAHGELDKPHLI + R+LLA +LTILTE Sbjct 1 MTIAKELKQKSNEELVKLVIKLKGELLEYRFKLAHGELDKPHLIAKVRKLLAVVLTILTE 60 Query 61 RKLNWQEEQAKYKLLTKKTNEAAVNAWKQHL 91 RKLNWQ E+ KYKLL++KTNE VN+WKQ L Sbjct 61 RKLNWQVEKDKYKLLSRKTNELIVNSWKQKL 91 Lambda K H a alpha 0.312 0.126 0.337 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7663396 Query= gi|13507913|ref|NP_109862.1| ribosomal protein S17 [Mycoplasma pneumoniae M129] Length=85 Score E Sequences producing significant alignments: (Bits) Value gi|12045013|ref|NP_072823.1| ribosomal protein S17 (rpS17) [Mycop... 140 3e-47 >gi|12045013|ref|NP_072823.1| ribosomal protein S17 (rpS17) [Mycoplasma genitalium G-37] Length=85 Score = 140 bits (353), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 68/85 (80%), Positives = 75/85 (88%), Gaps = 0/85 (0%) Query 1 MKRNQRKVLIGIVKSTKNAKTATVQVESRFKHPLYHKSVVRHKKYQAHNEGEVLAKDGDK 60 MKRNQRK LIG V STKNAKTATV+V SRFKHPLYHKSV+RHKKY HN GE++A DGD+ Sbjct 1 MKRNQRKQLIGTVVSTKNAKTATVKVTSRFKHPLYHKSVIRHKKYHVHNFGELVANDGDR 60 Query 61 VQIVETRPLSATKRFRIAKIIERAK 85 VQI+ETRPLSA KR+RI KIIERAK Sbjct 61 VQIIETRPLSALKRWRIVKIIERAK 85 Lambda K H a alpha 0.317 0.129 0.348 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4479270 Query= gi|13507914|ref|NP_109863.1| ribosomal protein L14 [Mycoplasma pneumoniae M129] Length=122 Score E Sequences producing significant alignments: (Bits) Value gi|12045014|ref|NP_072824.1| ribosomal protein L14 (rpL14) [Mycop... 234 2e-83 >gi|12045014|ref|NP_072824.1| ribosomal protein L14 (rpL14) [Mycoplasma genitalium G-37] Length=122 Score = 234 bits (597), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 116/122 (95%), Positives = 120/122 (98%), Gaps = 0/122 (0%) Query 1 MVSFMTRLNVADNTGAKQVGIIKVLGSTRKRYAFLGDVVVVSVKDAIPSGMVKKGQVLRA 60 MVSFMTRLNVADNTGAKQVGIIKVLG+T KRYAFLGDVVVVSVKDAIP+GMVKKGQVLRA Sbjct 1 MVSFMTRLNVADNTGAKQVGIIKVLGATYKRYAFLGDVVVVSVKDAIPNGMVKKGQVLRA 60 Query 61 VIVRTKKGQQRKDGTHLKFDDNACVLIKEDKSPRGTRIFGPVARELRERGYNKILSLAVE 120 VIVRTKKGQQR+DGTHLKF DNACVLIKEDKSPRGTRIFGPVARELRE+GYNKILSLAVE Sbjct 61 VIVRTKKGQQRQDGTHLKFHDNACVLIKEDKSPRGTRIFGPVARELREKGYNKILSLAVE 120 Query 121 VV 122 VV Sbjct 121 VV 122 Lambda K H a alpha 0.321 0.138 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8930705 Query= gi|13507915|ref|NP_109864.1| ribosomal protein L24 [Mycoplasma pneumoniae M129] Length=111 Score E Sequences producing significant alignments: (Bits) Value gi|12045015|ref|NP_072825.1| ribosomal protein L24 (rpL24) [Mycop... 144 6e-48 >gi|12045015|ref|NP_072825.1| ribosomal protein L24 (rpL24) [Mycoplasma genitalium G-37] Length=108 Score = 144 bits (362), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 77/111 (69%), Positives = 93/111 (84%), Gaps = 3/111 (3%) Query 1 MQRIKKGDKVVVITGKNKGGSGIVLKIMPARQQAIVEGLNKVTRHKKKDQTTKRAAKQST 60 MQRI+KGDKVVVITGKNKGGSGIVLK++ + +AIVEG+NKVT H KK+Q KR+ + T Sbjct 1 MQRIRKGDKVVVITGKNKGGSGIVLKVLTKQNKAIVEGINKVTVH-KKEQVNKRS--KQT 57 Query 61 GKVQQEAPIFLSKLALFDQKAKQQTIGKIKYVMDPKTNKKTRVFKKSNNTL 111 +EAP+ L+KLALFDQKAKQQTIGKIKY +DPKT +KTRVFKK+NN + Sbjct 58 NPTTKEAPLPLNKLALFDQKAKQQTIGKIKYQIDPKTKQKTRVFKKTNNAI 108 Lambda K H a alpha 0.313 0.128 0.339 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7663396 Query= gi|13507916|ref|NP_109865.1| ribosomal protein L5 [Mycoplasma pneumoniae M129] Length=180 Score E Sequences producing significant alignments: (Bits) Value gi|12045016|ref|NP_072826.1| ribosomal protein L5 (rpL5) [Mycopla... 316 5e-114 >gi|12045016|ref|NP_072826.1| ribosomal protein L5 (rpL5) [Mycoplasma genitalium G-37] Length=180 Score = 316 bits (810), Expect = 5e-114, Method: Compositional matrix adjust. Identities = 148/179 (83%), Positives = 166/179 (93%), Gaps = 0/179 (0%) Query 1 MNNLKAHYQKTIAKELQKSFAFSSIMQVPRLEKIVINMGVGDAIRDSKFLESALNELHLI 60 MNNL+ Y+ + +LQ+ FSSIMQVP+L KIV+NMGVGDAIRD+KFLESALNELHLI Sbjct 1 MNNLEKTYKTELVNQLQQQLGFSSIMQVPKLTKIVVNMGVGDAIRDNKFLESALNELHLI 60 Query 61 SGQKPVATKAKNAISTYKLRAGQLIGCKVTLRGERMWAFLEKLIYVALPRVRDFRGLSLK 120 +GQKPVATKAKNAISTYKLRAGQLIGCKVTLR ++MW+FLEKLIY+ALPRVRDFRGLSL+ Sbjct 61 TGQKPVATKAKNAISTYKLRAGQLIGCKVTLRNKKMWSFLEKLIYIALPRVRDFRGLSLR 120 Query 121 SFDGRGNYTIGIKEQIIFPEIVYDDIKRIRGFDVTLVTSTNKDSEALALLRALNLPLVK 179 SFDG+GNYTIGIKEQIIFPEIVYDDIKRIRGFD+T+VTSTNKDSEALALLRAL +P VK Sbjct 121 SFDGKGNYTIGIKEQIIFPEIVYDDIKRIRGFDITIVTSTNKDSEALALLRALKMPFVK 179 Lambda K H a alpha 0.322 0.138 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 16613935 Query= gi|13507917|ref|NP_109866.1| ribosomal protein S14 [Mycoplasma pneumoniae M129] Length=61 Score E Sequences producing significant alignments: (Bits) Value gi|12045017|ref|NP_072827.1| ribosomal protein S14 (rpS14) [Mycop... 111 2e-36 >gi|12045017|ref|NP_072827.1| ribosomal protein S14 (rpS14) [Mycoplasma genitalium G-37] Length=61 Score = 111 bits (277), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 55/61 (90%), Positives = 57/61 (93%), Gaps = 0/61 (0%) Query 1 MAKKSLKVKQTRIPKFAVRAYTRCQRCGRARAVLSHFGVCRLCFRELAYAGAIPGVKKAS 60 MAKKSLKVKQ+R KF+VR YTRC RCGRARAVLSHFGVCRLCFRELAYAGAIPGVKKAS Sbjct 1 MAKKSLKVKQSRPNKFSVRDYTRCLRCGRARAVLSHFGVCRLCFRELAYAGAIPGVKKAS 60 Query 61 W 61 W Sbjct 61 W 61 Lambda K H a alpha 0.331 0.137 0.445 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4305771 Query= gi|13507918|ref|NP_109867.1| ribosomal protein S8 [Mycoplasma pneumoniae M129] Length=142 Score E Sequences producing significant alignments: (Bits) Value gi|12045018|ref|NP_072828.1| ribosomal protein S8 (rpS8) [Mycopla... 249 1e-88 >gi|12045018|ref|NP_072828.1| ribosomal protein S8 (rpS8) [Mycoplasma genitalium G-37] Length=141 Score = 249 bits (636), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 122/134 (91%), Positives = 130/134 (97%), Gaps = 0/134 (0%) Query 9 KAHFDPVADLLTKINNARKAKLMTVTTIASKLKIAILEILVKEGYLANFQVLENKSKTKR 68 KAHFDPV+DL TKINNARKAKL+TVTTIASKLKIAILEIL+KEGYLAN+QVLENK+KTK+ Sbjct 8 KAHFDPVSDLFTKINNARKAKLLTVTTIASKLKIAILEILIKEGYLANYQVLENKTKTKK 67 Query 69 IVTFNLKYTQRRIPSINGVKQISKPGLRIYRPFEKLPLVLNGLGIAIISTSDGVMTDKVA 128 +V+F LKYTQRRI SINGVKQISKPGLRIYR FEKLPLVLNGLGIAIISTSDGVMTDKVA Sbjct 68 LVSFTLKYTQRRICSINGVKQISKPGLRIYRSFEKLPLVLNGLGIAIISTSDGVMTDKVA 127 Query 129 RLKKIGGEILAYVW 142 RLKKIGGEILAYVW Sbjct 128 RLKKIGGEILAYVW 141 Lambda K H a alpha 0.321 0.137 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11673680 Query= gi|13507919|ref|NP_109868.1| ribosomal protein L6 [Mycoplasma pneumoniae M129] Length=184 Score E Sequences producing significant alignments: (Bits) Value gi|12045019|ref|NP_072829.1| ribosomal protein L6 (rpL6) [Mycopla... 278 1e-98 >gi|12045019|ref|NP_072829.1| ribosomal protein L6 (rpL6) [Mycoplasma genitalium G-37] Length=184 Score = 278 bits (711), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 137/184 (74%), Positives = 160/184 (87%), Gaps = 0/184 (0%) Query 1 MSKIGNRTITLDPAKVNLNFQKDHIAVKGPLGQIELKLPPNLPLKFELKDNNLQITRNNE 60 MSKIGNR+I +DP+KV+L + +KGPLG+ +KLP NLPLKF ++++ +++T NN Sbjct 1 MSKIGNRSIKIDPSKVSLMQTTTLLTIKGPLGENTIKLPKNLPLKFVVENDTIKVTNNNN 60 Query 61 LKQSKIFHGTYNALITNAIIGVTQGFEKKLRLVGVGYRANVEGETLNLQLGYSHPIKEKI 120 LKQ+KI HGT+NAL+ NA+IGVT+GFEKKL LVGVGYRANVEG+ LNLQLGYSHPIKE I Sbjct 61 LKQTKILHGTFNALVNNAVIGVTKGFEKKLILVGVGYRANVEGQFLNLQLGYSHPIKELI 120 Query 121 PKGLTVKVEKNTEITISGISKELVGQFATEVRKWRKPEPYKGKGVLYFDEVIVRKAGKTA 180 P LTVKVEKNTEITISGI KELVGQFATE+RKWRKPEPYKGKGVLYF+EVIVRK GKTA Sbjct 121 PNQLTVKVEKNTEITISGIKKELVGQFATEIRKWRKPEPYKGKGVLYFNEVIVRKQGKTA 180 Query 181 EGKK 184 EGKK Sbjct 181 EGKK 184 Lambda K H a alpha 0.314 0.136 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17191811 Query= gi|13507920|ref|NP_109869.1| ribosomal protein L18 [Mycoplasma pneumoniae M129] Length=116 Score E Sequences producing significant alignments: (Bits) Value gi|12045020|ref|NP_072830.1| ribosomal protein L18 (rpL18) [Mycop... 178 2e-61 >gi|12045020|ref|NP_072830.1| ribosomal protein L18 (rpL18) [Mycoplasma genitalium G-37] Length=115 Score = 178 bits (452), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 89/114 (78%), Positives = 101/114 (89%), Gaps = 0/114 (0%) Query 3 TRTEQRRLRHKRIVKKIRATNHDNRVVLMVIKSLNHISVQAWDFSQNIVLASSSSLALKL 62 TR ++RR+RHKRIVKKIR TN +NRVVL+VIKSL +ISVQAWDFS+N+VL SSSSL LKL Sbjct 2 TRNDKRRIRHKRIVKKIRLTNLNNRVVLIVIKSLKNISVQAWDFSKNVVLTSSSSLQLKL 61 Query 63 KNGNKDNAKLVGQDIADKLVKLKLTNVVFDTGGSKYHGRIAALAEAARERGLNF 116 KNGNK+NAKLVG DIA KL+KL +VVFDTGGSKYHGRIAALAE AR +GLNF Sbjct 62 KNGNKENAKLVGMDIATKLIKLNQKDVVFDTGGSKYHGRIAALAEGARAKGLNF 115 Lambda K H a alpha 0.319 0.131 0.357 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8225784 Query= gi|13507921|ref|NP_109870.1| ribosomal protein S5 [Mycoplasma pneumoniae M129] Length=219 Score E Sequences producing significant alignments: (Bits) Value gi|12045021|ref|NP_072831.1| ribosomal protein S5 (rpS5) [Mycopla... 326 1e-116 >gi|12045021|ref|NP_072831.1| ribosomal protein S5 (rpS5) [Mycoplasma genitalium G-37] Length=211 Score = 326 bits (836), Expect = 1e-116, Method: Compositional matrix adjust. Identities = 168/218 (77%), Positives = 189/218 (87%), Gaps = 9/218 (4%) Query 4 QNQKANQGNGLQTTNLQAHAQRKHNLRPSSEGIKKAVSKKEGGGHNRNNQNRRFQKPAF- 62 N + GL T+ L+ + KHNL+PSSE IKKAVSKKEG + +N+RFQK F Sbjct 1 MNDQKTTNTGLLTSTLKT--KPKHNLKPSSEAIKKAVSKKEG-----HYKNKRFQKHNFN 53 Query 63 -KSEFEERIVKLKRISKTTKGGRNMRFSVLVVVGNRKGKIGYGIAKALEVPNAIKKAIKA 121 KSEFEERIVKLKRISKTTKGGRNMRFSVLVVVGN+KGK+GYGIAKALEVP AIKKAIK Sbjct 54 NKSEFEERIVKLKRISKTTKGGRNMRFSVLVVVGNKKGKVGYGIAKALEVPLAIKKAIKK 113 Query 122 AHNSLHTIEIHKGSIYHEVIGRSGASRVLLKPAPQGTGIIAGGAIRAIIELAGYSDIYTK 181 AHNS+HT+EIHKGSIYHEVIGR GAS+VLLKPAP GTGIIAGGAIRAI+ELAG+SDIYTK Sbjct 114 AHNSIHTVEIHKGSIYHEVIGRKGASKVLLKPAPLGTGIIAGGAIRAIVELAGFSDIYTK 173 Query 182 NLGRNTPINMIHATMDGILKQLSPRRVAILRNKNLNEL 219 NLGRNTPINMIHATMDGILKQLSP++VA+LRNK +++L Sbjct 174 NLGRNTPINMIHATMDGILKQLSPKKVALLRNKPISDL 211 Lambda K H a alpha 0.315 0.132 0.367 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21812152 Query= gi|13507922|ref|NP_109871.1| ribosomal protein L15 [Mycoplasma pneumoniae M129] Length=151 Score E Sequences producing significant alignments: (Bits) Value gi|12045022|ref|NP_072832.1| ribosomal protein L15 (rpl15) [Mycop... 222 1e-77 >gi|12045022|ref|NP_072832.1| ribosomal protein L15 (rpl15) [Mycoplasma genitalium G-37] Length=150 Score = 222 bits (565), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 109/149 (73%), Positives = 128/149 (86%), Gaps = 0/149 (0%) Query 1 MELNQLKSVPKARNHKTKTLGRGHGSGLGKTSGRGQKGQKARKSGLTRPGFEGGQTPLYR 60 MEL+QLKSV K+RNHK+K +GRGHGSGLGKTS RGQKGQKARKSGLTR GFEGGQTPLYR Sbjct 1 MELHQLKSVSKSRNHKSKVVGRGHGSGLGKTSSRGQKGQKARKSGLTRLGFEGGQTPLYR 60 Query 61 RLPKFGNARKGFLKQEWVVLNLNKIAKLKLDKINRASLIEKQVISAKSQLPIKLIGHTKL 120 RLPK+G A KG LK+ WVVLNLNK+AKL L + RA+LIEK+VIS K+ LP+KLIG+TKL Sbjct 61 RLPKYGVANKGILKKRWVVLNLNKVAKLNLKTVTRATLIEKKVISKKNNLPLKLIGNTKL 120 Query 121 EKPLHFEVHKVSKQALKAVENANGSVKLL 149 P+HFEV K+SK AL AV+ + GSVK++ Sbjct 121 TTPIHFEVQKISKNALNAVQTSKGSVKII 149 Lambda K H a alpha 0.313 0.133 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12798456 Query= gi|13507923|ref|NP_109872.1| preprotein translocase subunit SecY [Mycoplasma pneumoniae M129] Length=477 Score E Sequences producing significant alignments: (Bits) Value gi|12045023|ref|NP_072833.1| preprotein translocase (secY) [Mycop... 763 0.0 >gi|12045023|ref|NP_072833.1| preprotein translocase (secY) [Mycoplasma genitalium G-37] Length=475 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/468 (87%), Positives = 441/468 (94%), Gaps = 0/468 (0%) Query 10 KQKQNFGQRLFTLLRNRDFMISFLITVVLLVLFRVLAIIPLPGIQVNQTGLDQNSNDFFS 69 KQK NFGQRL TLL+NRDFM+S ++TVVLL+LFRVLAIIPLPGI++N++ LD+NSNDFFS Sbjct 8 KQKLNFGQRLLTLLQNRDFMVSLVLTVVLLILFRVLAIIPLPGIRINESVLDRNSNDFFS 67 Query 70 LFNLLGGGGLNQLSLFAVGISPYISAQIVMQLLSTDLIPPLSKLVNSGEVGRRKIEMITR 129 LFNLLGGGGLNQLSLFAVGISPYISAQI+MQLLSTDLIPPLSKLVNSGEVGRRKIEMITR Sbjct 68 LFNLLGGGGLNQLSLFAVGISPYISAQIIMQLLSTDLIPPLSKLVNSGEVGRRKIEMITR 127 Query 130 IITLPFALVQSFAVIQIATNSGGGSSPITLKNNGSDFVAFYIIAMTAGTYLSVFLGDTIS 189 IITLPFALVQ+FAVIQIATN+G GSSPI+L N+GS+F+AFYIIAMTAGTY++VFLGDTIS Sbjct 128 IITLPFALVQAFAVIQIATNAGTGSSPISLANSGSEFIAFYIIAMTAGTYMAVFLGDTIS 187 Query 190 KKGIGNGITLLILSGILAQLPEGFIAAYSVLSGVVVTINATLTTAISFFIYFMAFVTLLF 249 KKG+GNGITLLILSGIL+QLP+GFIAAY+VLSG+V+T+ LT AISFFIYF+AF+ LLF Sbjct 188 KKGVGNGITLLILSGILSQLPQGFIAAYNVLSGIVITLTPQLTAAISFFIYFLAFLVLLF 247 Query 250 ATTFITQETRKIPIQQSGQGLVTESSALPYLPIKVNSAGVIPVIFASSIMSIPVTIAQFQ 309 ATTFITQ TRKIPIQQSGQGLV+E LPYLPIKVN+AGVIPVIFASSIMSIPVTIAQFQ Sbjct 248 ATTFITQATRKIPIQQSGQGLVSEVKTLPYLPIKVNAAGVIPVIFASSIMSIPVTIAQFQ 307 Query 310 PQTESRWFVEDYLSLSKPTGIVLYGILVILFSFFYSYIQINPERLAKNFEKSGRFIPGIR 369 PQTESRWFVEDYLSLS P GI LY +LVILFSFFYSYIQINPERLAKNFEKSGRFIPGIR Sbjct 308 PQTESRWFVEDYLSLSTPVGIFLYAVLVILFSFFYSYIQINPERLAKNFEKSGRFIPGIR 367 Query 370 PGKDTEKHIARVLVRINFIGAPFLTVIAIIPYIVSALIHLPNSLSLGGTGIIIIVTAVVE 429 PG DTEKHIARVL+RINFIGAPFLTVIAIIPYIVS I LPNSLSLGGTGIIIIVTAVVE Sbjct 368 PGNDTEKHIARVLIRINFIGAPFLTVIAIIPYIVSYFIRLPNSLSLGGTGIIIIVTAVVE 427 Query 430 FMSALRSAATATNYQQLRRNLAIEVQKTAQQDKEEQLRAETPGIGNLW 477 F+SALRSAATATNYQQLRRNLAIEVQ+TA+QD EQL+ E PGIGNLW Sbjct 428 FISALRSAATATNYQQLRRNLAIEVQQTAKQDSLEQLQKEAPGIGNLW 475 Lambda K H a alpha 0.324 0.140 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56465539 Query= gi|13507924|ref|NP_109873.1| adenylate kinase [Mycoplasma pneumoniae M129] Length=215 Score E Sequences producing significant alignments: (Bits) Value gi|12045024|ref|NP_072834.1| adenylate kinase (adk) [Mycoplasma g... 199 1e-66 >gi|12045024|ref|NP_072834.1| adenylate kinase (adk) [Mycoplasma genitalium G-37] Length=214 Score = 199 bits (506), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 95/211 (45%), Positives = 138/211 (65%), Gaps = 2/211 (1%) Query 5 NKFLFLGAPGVGKGTLAKQVANTTGLFHLSTGDIFRSVMQEQGALSQTLAHYMNQGLYVP 64 NKF+ LG PG GKGT+ K ++ TT L H+++GD+FR ++ Q + + +A ++QG YV Sbjct 6 NKFIILGPPGAGKGTVCKLLSKTTKLVHIASGDLFREAIKNQSVIGRKIAAIISQGGYVD 65 Query 65 DELTNQTFWHFVTTHQNELHKGFILDGYPRTLNQLEFLQSKLQLDQVFHLKLSDPQVLVA 124 D TNQ + ++TT N L GFILDGYPRT NQL+FL KL +D VF L +SD L+ Sbjct 66 DATTNQLVYEYITT--NPLPNGFILDGYPRTENQLDFLNIKLTIDMVFELVVSDLNKLIT 123 Query 125 RILNRLVCPSCGSVYNKQSKPPLKANQCDRCHATLQARNDDTEAVILKRLTLYEDTVKPL 184 RI NR++C +C SVYN + PL N CD+C A L R+DD +AV+ R+ LY+ T++P+ Sbjct 124 RIDNRVICNNCNSVYNLLFQKPLVENSCDQCSAKLVKRSDDNKAVVKARMELYQQTIQPI 183 Query 185 IEAFTKQGILTVIEAQLPLEQQVNLVQQLVH 215 F + +L I+ LPLE+Q+ ++Q + Sbjct 184 HTYFFNKQLLVQIDCFLPLEEQLKTIKQFIR 214 Lambda K H a alpha 0.321 0.136 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21238148 Query= gi|13507925|ref|NP_109874.1| methionine amino peptidase [Mycoplasma pneumoniae M129] Length=248 Score E Sequences producing significant alignments: (Bits) Value gi|12045025|ref|NP_072835.1| methionine aminopeptidase (map) [Myc... 352 4e-126 >gi|12045025|ref|NP_072835.1| methionine aminopeptidase (map) [Mycoplasma genitalium G-37] Length=248 Score = 352 bits (904), Expect = 4e-126, Method: Compositional matrix adjust. Identities = 163/248 (66%), Positives = 198/248 (80%), Gaps = 0/248 (0%) Query 1 MVYLKSAREVEQIRQACKIFQEAKAYFTIERLLGKSLTAIDQALKQFIESKGATCAFHKY 60 M+YLKSA EV I++AC IF+ KAYFTIE+LLGK L ID+ +KQFIE K A CAFH Y Sbjct 1 MIYLKSANEVAGIKKACAIFKAVKAYFTIEKLLGKKLVTIDRLIKQFIEQKQAKCAFHGY 60 Query 61 QNFPGFNCLSLNETVIHGIADNRVFGVKDKLTLDIGINLNGYICDAAFTVLGPKAPEPMQ 120 FPGFNCLSLN+TVIHG+AD VF DKLTLDIGI+ +GY+CDAAFT+LG KA Sbjct 61 LGFPGFNCLSLNQTVIHGVADQTVFKDSDKLTLDIGIDYHGYLCDAAFTLLGNKADPKAV 120 Query 121 TLLEVTEACFTAVVEPQLRPNNPTGNVSHAIQTYFESKGYYLLKQFGGHGCGIKVHEEPL 180 LL E F+ V+EP+L NNP GN+S+AIQTYFE+KGY+L+K+FGGHGCGIK+HE+PL Sbjct 121 KLLNDVEQAFSKVIEPELFVNNPIGNLSNAIQTYFENKGYFLVKEFGGHGCGIKIHEDPL 180 Query 181 ILNYGKPDTGTKLEPGMVLCIEPMVMTDSDAMVMHNNSWNVLTPKSRYNCHVEQMYVITT 240 ILN+G+ + G +L+ GMV+CIEPMVMTDS + M N+WNVLT KS++NCHVEQMY IT Sbjct 181 ILNWGEKNQGVRLQEGMVICIEPMVMTDSSEITMAANNWNVLTLKSKFNCHVEQMYHITN 240 Query 241 SGFECLTN 248 +GFECLTN Sbjct 241 NGFECLTN 248 Lambda K H a alpha 0.321 0.136 0.415 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 25743060 Query= gi|13507926|ref|NP_109875.1| initiation factor 1 [Mycoplasma pneumoniae M129] Length=78 Score E Sequences producing significant alignments: (Bits) Value gi|12045026|ref|NP_072836.1| translation initiation factor 1 (inf... 121 5e-40 >gi|12045026|ref|NP_072836.1| translation initiation factor 1 (infA) [Mycoplasma genitalium G-37] Length=70 Score = 121 bits (303), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 58/69 (84%), Positives = 64/69 (93%), Gaps = 0/69 (0%) Query 10 KQDKLVLTGKILEIIHGDKFRVLLENNVEVDAHLAGKMRMRRLRILPGDLVEVEFSPYDL 69 K DKL LTGKILEIIHGDK+RV+LENNVEVDAHLAGKM+M+R +ILPGD+VEVEFSPYDL Sbjct 2 KNDKLFLTGKILEIIHGDKYRVMLENNVEVDAHLAGKMKMKRTKILPGDVVEVEFSPYDL 61 Query 70 KLGRIIGRK 78 KLGRI RK Sbjct 62 KLGRITQRK 70 Lambda K H a alpha 0.324 0.144 0.407 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4414177 Query= gi|13507927|ref|NP_109876.1| ribosomal protein L36 [Mycoplasma pneumoniae M129] Length=37 Score E Sequences producing significant alignments: (Bits) Value gi|12045027|ref|NP_072837.1| ribosomal protein L36 (rpL36) [Mycop... 68.2 6e-20 >gi|12045027|ref|NP_072837.1| ribosomal protein L36 (rpL36) [Mycoplasma genitalium G-37] Length=37 Score = 68.2 bits (165), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 34/37 (92%), Positives = 37/37 (100%), Gaps = 0/37 (0%) Query 1 MKVRASVKPICKDCKIIKRHQIVRVICKTQKHKQRQG 37 MKVRASVKPICKDCKIIKRH+I+RVICKT+KHKQRQG Sbjct 1 MKVRASVKPICKDCKIIKRHRILRVICKTKKHKQRQG 37 Lambda K H a alpha 0.330 0.137 0.422 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4435730 Query= gi|13507928|ref|NP_109877.1| ribosomal protein S13 [Mycoplasma pneumoniae M129] Length=124 Score E Sequences producing significant alignments: (Bits) Value gi|12045028|ref|NP_072838.1| ribosomal protein S13 (rpS13) [Mycop... 226 4e-80 >gi|12045028|ref|NP_072838.1| ribosomal protein S13 (rpS13) [Mycoplasma genitalium G-37] Length=124 Score = 226 bits (576), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 110/124 (89%), Positives = 118/124 (95%), Gaps = 0/124 (0%) Query 1 MARILGIDIPNQKRIEIALTYIFGIGLSRSQAILKQANINPDKRVKDLTEEEFVAIRNVA 60 MARILGIDIPNQKRIEIALTYIFGIGLS ++ ILK+A INPDKRVKDL+EEE VAIRN A Sbjct 1 MARILGIDIPNQKRIEIALTYIFGIGLSSAKTILKKAKINPDKRVKDLSEEELVAIRNAA 60 Query 61 SAYKIEGDLRREIALNIKHLSEIGAWRGLRHRKNLPVRGQRTRTNARTRKGPRKTVANKK 120 S YKIEGDLRREIALNIKHL+EIG+W+G+RHRKNLPVRGQRTRTNARTRKGPRKTVANKK Sbjct 61 SGYKIEGDLRREIALNIKHLTEIGSWKGIRHRKNLPVRGQRTRTNARTRKGPRKTVANKK 120 Query 121 IESK 124 IESK Sbjct 121 IESK 124 Lambda K H a alpha 0.319 0.136 0.376 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9223515 Query= gi|13507929|ref|NP_109878.1| ribosomal protein S11 [Mycoplasma pneumoniae M129] Length=121 Score E Sequences producing significant alignments: (Bits) Value gi|12045029|ref|NP_072839.1| ribosomal protein S11 (rpS11) [Mycop... 210 1e-73 >gi|12045029|ref|NP_072839.1| ribosomal protein S11 (rpS11) [Mycoplasma genitalium G-37] Length=131 Score = 210 bits (534), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 100/115 (87%), Positives = 110/115 (96%), Gaps = 0/115 (0%) Query 1 MAKKKKINVSSGIIHVSCSPNNTIVSASDPGGNVLCWASSGTMGFKGSRKKTPYSAGIAA 60 MAKKKKINV SG+IHVSCSPNNTIVSA+DP GNVLCWASSGT+GFKG RKKTPYSAG+AA Sbjct 1 MAKKKKINVPSGLIHVSCSPNNTIVSATDPSGNVLCWASSGTVGFKGFRKKTPYSAGVAA 60 Query 61 DKVAKTVKEMGMATVKLFVKGTGRGKDTAIRSFANAGLSITEINEKTPIPHNGCK 115 DKVAKTVKEMGM +VK+++KGTGRGKDT IRSFANAG++ITEINEKTPIPHNGCK Sbjct 61 DKVAKTVKEMGMGSVKMYLKGTGRGKDTTIRSFANAGITITEINEKTPIPHNGCK 115 Lambda K H a alpha 0.313 0.129 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8784300 Query= gi|13507930|ref|NP_109879.1| RNA polymerase alpha core subunit [Mycoplasma pneumoniae M129] Length=327 Score E Sequences producing significant alignments: (Bits) Value gi|12045030|ref|NP_072840.1| DNA-directed RNA polymerase, subunit... 573 0.0 >gi|12045030|ref|NP_072840.1| DNA-directed RNA polymerase, subunit alpha (rpoA) [Mycoplasma genitalium G-37] Length=328 Score = 573 bits (1477), Expect = 0.0, Method: Compositional matrix adjust. Identities = 284/328 (87%), Positives = 303/328 (92%), Gaps = 1/328 (0%) Query 1 MEKFLKYEIKVNNEQARANPN-YGIFEVGPLESGFVITIGNAMRRVLLSCIPGASVFALS 59 MEKFLKYEIKVNN Q YGIFEV PLESGF ITIGNAMRRVLLSCIPGASVFA++ Sbjct 1 MEKFLKYEIKVNNNQPTNTNPNYGIFEVAPLESGFGITIGNAMRRVLLSCIPGASVFAIA 60 Query 60 ISGAKQEFAAVEGMKEDVTEVVLNFKQLVVKISDLLFEDGEMVEPPLERWPLLTVTAEKA 119 ISG KQEF+ VEG+ EDVTE+VLNFKQLVV+ISDLLFEDGEM+EPPLERWP+L VTAEK Sbjct 61 ISGVKQEFSNVEGVLEDVTEMVLNFKQLVVRISDLLFEDGEMIEPPLERWPVLKVTAEKK 120 Query 120 GPVYAKDLECPAGFEVVNKDLYLFSLQTDKKVTVNVYVKQGRGFVTFLENREMINSLGII 179 G VYAKDLECPAGFEV+NKDLYLFSLQ D K+TV+VYVKQGRGF +FLENRE+INSLGII Sbjct 121 GAVYAKDLECPAGFEVINKDLYLFSLQKDMKLTVSVYVKQGRGFTSFLENRELINSLGII 180 Query 180 ATDSNFSPVLHCGYEVQELKTSKQKITDHLTFKIATNGAISAVDAFAMAAKILIEHLNPI 239 ATD+NFSPVLHCGYEVQE+KTSKQK+TDHLTFKIATNGAI AVDAFAMAAKILIEHLNPI Sbjct 181 ATDANFSPVLHCGYEVQEVKTSKQKLTDHLTFKIATNGAIKAVDAFAMAAKILIEHLNPI 240 Query 240 VNVNESIKALNIIQEKAEERRVRSFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSLAD 299 V+VNESIK L IIQEKAEER+V+SFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSL D Sbjct 241 VSVNESIKNLTIIQEKAEERKVKSFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSLTD 300 Query 300 IREIRNLGKKSEREIIKKVHELGLKLRS 327 IREIRNLGKKSEREIIKKV ELGLK RS Sbjct 301 IREIRNLGKKSEREIIKKVQELGLKFRS 328 Lambda K H a alpha 0.319 0.135 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36240640 Query= gi|13507931|ref|NP_109880.1| ribosomal protein L17 [Mycoplasma pneumoniae M129] Length=124 Score E Sequences producing significant alignments: (Bits) Value gi|12045031|ref|NP_072841.1| ribosomal protein L17 (rpL17) [Mycop... 208 6e-73 >gi|12045031|ref|NP_072841.1| ribosomal protein L17 (rpL17) [Mycoplasma genitalium G-37] Length=123 Score = 208 bits (529), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 100/121 (83%), Positives = 110/121 (91%), Gaps = 0/121 (0%) Query 1 MSYINKPGKTSAWRVMTVRQQVSAVLAYGKIETTLKKAKNTQKRLDKLITLAKVDNFNNR 60 MSYINK GKT+AWRVMTVRQQVSAVL+YGKI+TTLKKAKNTQKRL+K+IT+AKVDNFNNR Sbjct 1 MSYINKEGKTTAWRVMTVRQQVSAVLSYGKIQTTLKKAKNTQKRLEKIITIAKVDNFNNR 60 Query 61 RQVKKWLLNTNLFDVDQLMDHLFSKVAPKYEKTPGGYSRVLKLGPRRGDATEMAILQLTD 120 R VKKWLLNTN DVDQL +HLF KVAP++ K GGYSRVLKLG RRGD+TEMAILQL D Sbjct 61 RAVKKWLLNTNSLDVDQLTNHLFKKVAPRFLKRNGGYSRVLKLGVRRGDSTEMAILQLID 120 Query 121 A 121 A Sbjct 121 A 121 Lambda K H a alpha 0.317 0.131 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9223515 Query= gi|13507932|ref|NP_109881.1| cobalt transport ATP-binding protein [Mycoplasma pneumoniae M129] Length=274 Score E Sequences producing significant alignments: (Bits) Value gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 448 6e-163 gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein... 145 2e-44 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 144 4e-43 gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein... 97.1 1e-24 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 92.4 1e-23 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 90.9 6e-23 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 88.6 2e-22 gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 88.6 5e-22 gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 87.8 2e-21 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 83.2 8e-20 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 81.6 2e-19 gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein... 74.7 6e-17 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 70.5 1e-15 gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 68.6 2e-15 gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 62.4 7e-13 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 61.2 2e-12 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 448 bits (1152), Expect = 6e-163, Method: Compositional matrix adjust. Identities = 218/274 (80%), Positives = 245/274 (89%), Gaps = 1/274 (0%) Query 1 MLNTNKQAAASFQGVYFSYSELPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLK 60 ML T KQAA SF V FSY+ELPLIR LSF V+EGEYVCIVGHNGSGKSTISKLLTGLLK Sbjct 1 MLPT-KQAACSFINVAFSYNELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLK 59 Query 61 PQAGTIKIFGKTISSENVTYLRNHIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMK 120 PQAG IKIFGKT+ +NV+YLRN+IGIIFQNPDNQFIGITVEDDIAFGLEN+ ++R+K+K Sbjct 60 PQAGEIKIFGKTVDFDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIK 119 Query 121 SIIEDVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRT 180 +II++V Q +++EPHNLSGGQKQRVAIASVLALNPAIIIFDEST+MLDPKAK+T Sbjct 120 AIIDEVTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKT 179 Query 181 IKQFMVELRNQGKCVISITHDMEEVTKADKVLVMNEGRLIRQGKPKDVFNSAAELQKIRL 240 IKQFMV+L QGKCVISITHDMEEVTKADKVLVMNEG+LI+QGKP +VF S ELQKIRL Sbjct 180 IKQFMVKLAKQGKCVISITHDMEEVTKADKVLVMNEGKLIKQGKPVEVFTSEQELQKIRL 239 Query 241 DIPFSLSLSTKVNGVTSTIDYQQLIEAIGKLWKK 274 DIPFSLSLSTK+ G+TSTIDYQ LI++I KLWKK Sbjct 240 DIPFSLSLSTKIRGITSTIDYQTLIKSIAKLWKK 273 >gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length=253 Score = 145 bits (367), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 136/233 (58%), Gaps = 11/233 (5%) Query 24 LIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTISSENVTYLRN 83 ++ +SF+V +G ++ ++GHNGSGKST+ KLL G LK + GTI K ++S N Sbjct 1 MLNQISFNVQDGCHLAVIGHNGSGKSTLVKLLGGFLKAKKGTIFFNDKELTSVGF----N 56 Query 84 HIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQAGITELLQKE--P- 140 IGI+ Q+PD Q + T+ ++ F LEN +M II +V + EL K+ P Sbjct 57 KIGILLQDPDVQLLADTLHQELIFTLENHGVLASEMDKIINEVLT---VVELKDKQFTPL 113 Query 141 HNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVE-LRNQGKCVISIT 199 LS G+KQR A +LA+ P I + DE+ SMLD K +K+F+ + ++ Q K VI+IT Sbjct 114 KKLSFGEKQRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIVINIT 173 Query 200 HDMEEVTKADKVLVMNEGRLIRQGKPKDVFNSAAELQKIRLDIPFSLSLSTKV 252 HD ++ AD+++ +++G LI++ P+ ++ ++PF L L+ KV Sbjct 174 HDFNDLFLADEIIFLSKGSLIKKFAPEAIYEQLDLFHNHHFNLPFPLLLAHKV 226 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 144 bits (362), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 92/248 (37%), Positives = 135/248 (54%), Gaps = 15/248 (6%) Query 8 AAASFQGVYFSYSELPL--IRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGT 65 A + V+ S + P+ I + S+ + + CI+G +GSGKST+ GL+KP G Sbjct 18 AVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGD 77 Query 66 I-----KIFGKTISSENVTYLRNHIGIIFQNPDNQFIGITVEDDIAFG---LENRRY-TR 116 I I K +N LR I I+FQ P+ Q TVE DI FG L +Y R Sbjct 78 IWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQSKYDAR 137 Query 117 EKMKSIIEDVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPK 176 +K +E + + L++ P LSGGQK+RVAIA +LA+ P I+IFDE T+ LDP+ Sbjct 138 QKAAYYLEMMGLK---YPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPE 194 Query 177 AKRTIKQFMVELRNQGKCVISITHDMEEVTK-ADKVLVMNEGRLIRQGKPKDVFNSAAEL 235 +R + Q + + Q + V ITH ME V + AD VLV+ +G+L++ P +VF L Sbjct 195 GEREMMQLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMDQTFL 254 Query 236 QKIRLDIP 243 +K + +P Sbjct 255 EKTTIVLP 262 >gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=623 Score = 97.1 bits (240), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/243 (31%), Positives = 115/243 (47%), Gaps = 42/243 (17%) Query 24 LIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTISSENVTYLRN 83 ++NLSF + IVG GSGKS I+ ++ GL +P G I I G+ I S + YL Sbjct 382 FLQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSE 441 Query 84 HIGIIFQNPDNQFIGITVEDDIAFGLENRRYTR--------EKMKSIIEDVAQQAGITEL 135 IGI+FQ N T+ +I G+E R + E MK+ + I + Sbjct 442 MIGIVFQQ--NILFKGTISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTFIEKF 499 Query 136 LQKEPH-------NLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVEL 188 H NLSGGQKQRVAIA L P I++FD+S S LD ++ +++ Sbjct 500 SDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDSMSALDALTEKKVRE----- 554 Query 189 RNQGKCVISITHDMEEVTK------------ADKVLVMNEGRLIRQGKPKDVFNSAAELQ 236 +I +D++ TK ADK+LV++ GR++ + + + + Q Sbjct 555 --------NIENDLKLTTKIIISQNINSIKHADKILVIDNGRIVGFDSDQKLMKNCSLYQ 606 Query 237 KIR 239 K++ Sbjct 607 KMK 609 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 92.4 bits (228), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 114/208 (55%), Gaps = 8/208 (4%) Query 18 SYSELPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKI----FGKTI 73 S E+ ++ ++S + GE V I+G +GSGK+T+ L+ G G+ + K Sbjct 98 SKQEISILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCT 157 Query 74 SSENVTYLRNHIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQAGIT 133 S + +TY +N++G ++Q N ++ D+IA + + + + IE++A++ I Sbjct 158 SEQLLTYRKNNLGYVYQRY-NLIELLSAYDNIA--ISQNLIPKYQRRLDIEELAEKLDIK 214 Query 134 ELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRNQGK 193 E+L K P+ +SGGQKQRVAIA + P +++ DE T LD + I + + K Sbjct 215 EILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYK 274 Query 194 -CVISITHDMEEVTKADKVLVMNEGRLI 220 ++ +THD+ A++++ +++G+++ Sbjct 275 QTILMVTHDVSLTRIANRIIKISDGKIV 302 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 90.9 bits (224), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 111/218 (51%), Gaps = 20/218 (9%) Query 27 NLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLK-----PQAGTIKIFGKTISSE--NVT 79 +++ D+ + ++G +G GKST + L L G I GK I+S N Sbjct 101 DINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGIINDL 160 Query 80 YLRNHIGIIFQ--NPDNQFIGITVEDDIAFGL-----ENRRYTREKMKSIIEDVAQQAGI 132 LR +G++FQ P N ++ ++IA+G+ N+ E ++ + A + Sbjct 161 TLRTSVGMVFQKLTPFN----FSIFENIAYGIRAHGIHNKNAINEIVRQALISAALWDEV 216 Query 133 TELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRNQG 192 + L + + LSGGQ+QR+ IA +AL P +++ DE TS LD A +I+ + +L+ + Sbjct 217 KDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKEKF 276 Query 193 KCVISITHDMEEVTK-ADKVLVMNEGRLIRQGKPKDVF 229 VI +TH M + + D+ + +GR+I QG K +F Sbjct 277 TIVI-VTHSMAQTIRITDETIFFADGRVIEQGTTKQIF 313 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 88.6 bits (218), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/202 (31%), Positives = 114/202 (56%), Gaps = 10/202 (5%) Query 24 LIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGK---TISSENVTY 80 + +++ + GE+V I+G +GSGK+++ L++ L +P +G + G S +T Sbjct 71 ICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNTICCSDAKLTA 130 Query 81 LRN-HIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQAGITELLQKE 139 LRN ++G IFQ + V+D+I L +++ + +E++ ++ + E K+ Sbjct 131 LRNKNVGYIFQQY-GLLRDLDVDDNIKLALP----LKKRFNNNLEELLERLELKEHRHKK 185 Query 140 PHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVEL-RNQGKCVISI 198 H LSGGQ+QRVAIA L P I+ DE T ++ + I QF VE R++G ++ + Sbjct 186 VHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIV 245 Query 199 THDMEEVTKADKVLVMNEGRLI 220 TH+ + V A +V+ +++G++I Sbjct 246 THNEKIVELAKRVIKIHDGKII 267 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 88.6 bits (218), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/211 (29%), Positives = 108/211 (51%), Gaps = 8/211 (4%) Query 40 IVGHNGSGKSTISKLLTGLLKPQAGTIKI-----FGKTISSENVTYLRNHIGIIFQNPDN 94 I G +GSGK+T+ K L KP G I F + + IG I Q ++ Sbjct 105 IFGESGSGKTTLIKQLGLFEKPSFGYINCANYCYFANQYQQKITKNFKQKIGYILQKAED 164 Query 95 QFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQAGITEL-LQKEPHNLSGGQKQRVAI 153 QF ++ +++ G N + +K + + G+ + L K P LS GQK+R+A+ Sbjct 165 QFFCDSILEEVLTGAVNLKLCHKKDVNYAKKYLDLCGLENIPLIKNPIELSDGQKKRLAL 224 Query 154 ASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRNQGKCVISITHDMEEVTK-ADKVL 212 ASVLA+ +I DE T LD A + + +V ++ + VI ++HD++ + + ADK++ Sbjct 225 ASVLAMQVKFLILDEPTVGLDQMAISNLSKMLVAMKQTTRIVI-VSHDVDFIFETADKII 283 Query 213 VMNEGRLIRQGKPKDVFNSAAELQKIRLDIP 243 +++G++I Q D F++ + L + + P Sbjct 284 HLHQGKIIHQTTVNDFFSNTSWLMQYGITPP 314 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 87.8 bits (216), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 116/208 (56%), Gaps = 22/208 (11%) Query 27 NLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTI---SSENVTYLRN 83 ++S V+E I+G NG+GKST++ +L GL KP +G I I K + SS++ +++ Sbjct 25 DVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKIFIGEKQVNFKSSKDA--VKH 82 Query 84 HIGIIFQNPDNQFI-GITVEDDIAFGLE---------NRRYTREKMKSIIEDVAQQAGIT 133 IG++ Q+ + I TV D+I G E NR+ + K+K+I+E + GI Sbjct 83 KIGMVHQHF--KLIENYTVLDNIILGNESRFGFLPLINRKVSEAKIKTIME----KYGIF 136 Query 134 ELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRNQGK 193 L+++ NL+ GQ+QRV I VL + I+IFDE T++L + + + + GK Sbjct 137 VDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIANFKKLGK 196 Query 194 CVISITHDMEEVTK-ADKVLVMNEGRLI 220 ++ I+H + E+ + AD V+ G+++ Sbjct 197 TIVLISHKLNEIKQVADTATVLRLGKVV 224 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 83.2 bits (204), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 75/123 (61%), Gaps = 2/123 (2%) Query 111 NRRYTREKMKSIIEDVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDEST 170 +R+ T+ + + DV + G+ + P LSGG KQRVA+A L + P I++ DE Sbjct 316 SRKLTKAEQNKKVSDVIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPL 375 Query 171 SMLDPKAKRTIKQFMVEL-RNQGKCVISITHDMEE-VTKADKVLVMNEGRLIRQGKPKDV 228 S LD K ++ +++ + ++ + G I +THD EE + +D+++VMNEG +++ G P D+ Sbjct 376 SALDAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDI 435 Query 229 FNS 231 ++S Sbjct 436 YDS 438 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 81.6 bits (200), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/207 (30%), Positives = 110/207 (53%), Gaps = 23/207 (11%) Query 36 EYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTISSEN----VTYLRNHIGIIFQN 91 +++ I+G +GSGK+T+ +++G+ + +G++ + G + N + + ++G IFQ Sbjct 263 DFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTKFRQKYVGYIFQQ 322 Query 92 ----PDNQFIGITVEDDIAFG--LENRRYTREKMKSIIEDVAQQAGITELLQKEPHNLSG 145 P+ +TV ++I G L+ R + +++E V G+ L +K P+ LSG Sbjct 323 YGLLPN-----LTVRENIEIGANLQPDPSKRISIDALLEAV----GMDSLQKKLPNELSG 373 Query 146 GQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTI-KQFMVELRNQGKCVISITHDMEE 204 GQ+QRV+IA A NP +I DE T LD + + + KQF+ + +I +TH+ Sbjct 374 GQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMIIVTHNNLI 433 Query 205 VTKADKVLVMNEGR---LIRQGKPKDV 228 AD V+ + +G+ L R PK V Sbjct 434 ANLADLVIYVADGKIKSLHRNLNPKQV 460 >gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=589 Score = 74.7 bits (182), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/220 (27%), Positives = 109/220 (50%), Gaps = 13/220 (6%) Query 12 FQGVYFSYS-ELPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFG 70 F+ V F Y+ + P + ++F V G+ V IVG G+GKSTI LL KP G I + Sbjct 354 FENVAFGYNKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDN 413 Query 71 KTISSENVTYLRNHIGIIFQNPDNQFIGITVEDDIAFGLENRRYTREKMKSIIEDVAQQA 130 IS R I I+ Q D+ T++++I G ++ T +++ + + Sbjct 414 FEISDVTKKAWREKISIVLQ--DSFLFSGTIKENIRLGRQDA--TDDEIIAACKTANAHD 469 Query 131 GITEL-------LQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQ 183 I L + + LS G++Q + IA + N +++ DE+TS +D +++ I++ Sbjct 470 FIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDVHSEKLIQE 529 Query 184 FMVELRNQGKCVISITHDMEEVTKADKVLVMNEGRLIRQG 223 + L + K I+H + + A ++V+N+G+++ G Sbjct 530 SIGRLM-KNKTSFIISHRLSIIRDATLIMVINDGKVLEMG 568 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 70.5 bits (171), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 67/110 (61%), Gaps = 8/110 (7%) Query 125 DVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPK----AKRT 180 +VA + IT++L K P +SGGQ+QRVAIA + P +++ DE S LD K ++ Sbjct 350 EVANKLAITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQW 409 Query 181 IKQFMVELRNQGKCVISITHDMEE-VTKADKVLVMNEGRLIRQGKPKDVF 229 I+QF EL+ + +THD EE ++ +D ++ M+ G++ + G P +++ Sbjct 410 IRQFQQELQ---ITTVFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELY 456 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 68.6 bits (166), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 103/208 (50%), Gaps = 22/208 (11%) Query 11 SFQGVYFSYSELPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFG 70 SF+ V Y + PL++N+SF V E VC++G +G GKS++ +T ++G + G Sbjct 8 SFEKVSIIYKKAPLLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVYFDG 67 Query 71 KTISSENVTYLRNHIGIIFQNP---DNQFIGITV-----------EDDIAFGLENRRYTR 116 + + L+ + Q P D ++ + + I F ++ + Sbjct 68 VASNKKEYKKLKKQCSYLDQIPNLIDTDYVYEAILRSAKQKLTWLQKLICF---EPKWIK 124 Query 117 EKMKSIIEDVAQQAGITELLQKEPHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPK 176 +K+ +I+++V ++ +++ +LS GQKQRV IA + +P +++ DE T+ LDP Sbjct 125 DKILAILKEVNLNDYVSCIIK----DLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPL 180 Query 177 AKRTIKQFMVELRNQGK-CVISITHDME 203 I + + + K ++ +THD++ Sbjct 181 TASKIMDLITDFVKREKITLVFVTHDID 208 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 62.4 bits (150), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/264 (25%), Positives = 110/264 (42%), Gaps = 56/264 (21%) Query 22 LPLIRNLSFDVFEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGTIKIFGKTISSENVTYL 81 L +R + V G V IVG +GSGKS K + G K+ + ++T L Sbjct 38 LHAVRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFNDNAQTKAKLMN--FKNVDITKL 95 Query 82 RNH---------IGIIFQNP-----DNQFIGITVED---------------DIAFGLENR 112 + H + I Q+P IG V++ D+ F L N+ Sbjct 96 KKHQWKYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNK 155 Query 113 RYTREKMKSIIEDVAQ-----------QAGITELLQ------------KEPHNLSGGQKQ 149 ++ KS ++++ Q + E+LQ P SGG +Q Sbjct 156 EIDKKTYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQ 215 Query 150 RVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVELRN-QGKCVISITHDMEEVTK- 207 R+ IA +A P +II DE T+ LD + + + +LR+ +I I+H++ + Sbjct 216 RIVIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLRDLLNITIIFISHNISLIANF 275 Query 208 ADKVLVMNEGRLIRQGKPKDVFNS 231 D V VM G+++ QG +++F + Sbjct 276 CDFVYVMYAGKIVEQGLVEEIFTN 299 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 61.2 bits (147), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/94 (33%), Positives = 55/94 (59%), Gaps = 2/94 (2%) Query 140 PHNLSGGQKQRVAIASVLALNPAIIIFDESTSMLDPKAKRTIKQFMVEL-RNQGKCVISI 198 PH SGGQ+QR+AIA L P +II DE S LD + + + +L + V+ I Sbjct 682 PHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTVLFI 741 Query 199 THDMEEV-TKADKVLVMNEGRLIRQGKPKDVFNS 231 HD+ V T +++++M+ G+++ +G ++F++ Sbjct 742 AHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSN 775 Lambda K H a alpha 0.318 0.135 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29219265 Query= gi|13507933|ref|NP_109882.1| cobalt transport ATP-binding protein [Mycoplasma pneumoniae M129] Length=303 Score E Sequences producing significant alignments: (Bits) Value gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 495 0.0 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 151 6e-46 gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 132 1e-37 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 99.0 1e-25 gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 90.9 3e-22 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 88.2 8e-22 gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein... 84.3 7e-21 gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein... 85.1 3e-20 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 83.2 2e-19 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 77.4 1e-17 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 71.6 9e-16 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 65.9 4e-14 gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 64.3 2e-13 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 64.3 3e-13 gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 59.3 4e-12 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 495 bits (1275), Expect = 0.0, Method: Compositional matrix adjust. Identities = 242/303 (80%), Positives = 270/303 (89%), Gaps = 2/303 (1%) Query 2 KKIVELKNPLRDGEILSVSNLSCFFNEKTVHEVKVIDNFSYTFAKNKVYCIIGDSGSGKS 61 KKIV + NPL+ EIL+VS+LSC FN KT + +KVID+FSYTF KN++YCIIGDSGSGKS Sbjct 3 KKIVPI-NPLKADEILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKS 61 Query 62 TLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDFKRLRKTISIVFQFPEYQLFKDTVEKD 121 TLVNHFNGLIKP GDIWVKDIYIG KQRKIK+FK+LRKTISIVFQFPEYQLFKDTVEKD Sbjct 62 TLVNHFNGLIKPNQGDIWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKD 121 Query 122 IMFGPIALGQSKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEV 181 IMFGP+ALGQSK +ARQKAAYYLE MGLKY FLERNPFELSGGQKRRVAIAGILAIEPE+ Sbjct 122 IMFGPVALGQSKYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEI 181 Query 182 LIFDEPTAGLDPEGEREMMRLIKDAKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKS 241 LIFDEPTAGLDPEGEREMM+LIK AK RTVFMITHQMENVLEVAD VLVL+KG+LVK+ Sbjct 182 LIFDEPTAGLDPEGEREMMQLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKA 241 Query 242 GDPYEVFMDEAFLAHTTIIMPPVIQVIKDLINLNPKFSCLLDFKPRNLDQLADAINNTIA 301 PYEVFMD+ FL TTI++PPVIQVIKDLI +N F+ L++ +P+NL+QLA AIN TIA Sbjct 242 ASPYEVFMDQTFLEKTTIVLPPVIQVIKDLIAINAHFNKLIELQPKNLEQLASAINKTIA 301 Query 302 -HG 303 HG Sbjct 302 NHG 304 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 151 bits (381), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 136/234 (58%), Gaps = 13/234 (6%) Query 32 HEVKVIDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRK 91 +E+ +I S++ + + CI+G +GSGKST+ GL+KP G+I I K Sbjct 19 NELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEI-----KIFGKTVD 73 Query 92 IKDFKRLRKTISIVFQFPEYQLFKDTVEKDIMFGPIALGQSKNEARQKAAYYLEKMGLKY 151 + LR I I+FQ P+ Q TVE DI FG ++K +RQK ++++ L+ Sbjct 74 FDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGL----ENKCFSRQKIKAIIDEVTLQT 129 Query 152 T---FLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDAKA 208 F+++ P LSGGQK+RVAIA +LA+ P ++IFDE TA LDP+ ++ + + + Sbjct 130 QTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAK 189 Query 209 SGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVFMDEAFLAHTTIIMP 262 G+ V ITH ME V + AD+VLV+++G+L+K G P EVF E L + +P Sbjct 190 QGKCVISITHDMEEVTK-ADKVLVMNEGKLIKQGKPVEVFTSEQELQKIRLDIP 242 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 132 bits (331), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/267 (30%), Positives = 144/267 (54%), Gaps = 10/267 (4%) Query 10 PLRDGEILSVSNLSCFFNEKTV-----HEVKVIDNFSYTFAKNKVYCIIGDSGSGKSTLV 64 P + ++L++ FFN +V ++ ++I S NK+ I G+SGSGK+TL+ Sbjct 58 PFFNSKLLNIEQDPLFFNNISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLI 117 Query 65 NHFNGLIKPAYGDIWVKDI--YIGQKQRKIKDFKRLRKTISIVFQFPEYQLFKDTVEKDI 122 KP++G I + + Q Q+KI K ++ I + Q E Q F D++ +++ Sbjct 118 KQLGLFEKPSFGYINCANYCYFANQYQQKIT--KNFKQKIGYILQKAEDQFFCDSILEEV 175 Query 123 MFGPIALGQSKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEVL 182 + G + L + A YL+ GL+ L +NP ELS GQK+R+A+A +LA++ + L Sbjct 176 LTGAVNLKLCHKKDVNYAKKYLDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFL 235 Query 183 IFDEPTAGLDPEGEREMMRLIKDAKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSG 242 I DEPT GLD + +++ K + R V +++H ++ + E AD+++ L +G+++ Sbjct 236 ILDEPTVGLDQMAISNLSKMLVAMKQTTRIV-IVSHDVDFIFETADKIIHLHQGKIIHQT 294 Query 243 DPYEVFMDEAFLAHTTIIMPPVIQVIK 269 + F + ++L I P +IQ +K Sbjct 295 TVNDFFSNTSWLMQYGITPPVIIQAVK 321 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 99.0 bits (245), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 28/244 (11%) Query 26 FNEKTVHEVKVIDNFSYTFAKNK--------------VYCIIGDSGSGKSTLVNHFNGLI 71 F+EK V E++ NF++ + KNK + +IG SG GKST + N L Sbjct 77 FDEKNVFEIR---NFNFWYNKNKQVLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLN 133 Query 72 KPAYGDIWVKDIYIGQKQRK---IKDFKRLRKTISIVFQFPEYQLFKDTVEKDIMFGPIA 128 W DIY K I D LR ++ +VFQ + F ++ ++I +G A Sbjct 134 DLNENTRWTGDIYFLGKNINSGIINDLT-LRTSVGMVFQ--KLTPFNFSIFENIAYGIRA 190 Query 129 LG-QSKNEARQKAAYYLEKMGLKYTF---LERNPFELSGGQKRRVAIAGILAIEPEVLIF 184 G +KN + L L L RN LSGGQ++R+ IA +A++P+VL+ Sbjct 191 HGIHNKNAINEIVRQALISAALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLM 250 Query 185 DEPTAGLDPEGEREMMRLIKDAKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDP 244 DEPT+ LD + LI+ K T+ ++TH M + + DE + + G++++ G Sbjct 251 DEPTSALDSIATNSIELLIQQLKEKF-TIVIVTHSMAQTIRITDETIFFADGRVIEQGTT 309 Query 245 YEVF 248 ++F Sbjct 310 KQIF 313 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 90.9 bits (224), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/213 (33%), Positives = 119/213 (56%), Gaps = 21/213 (10%) Query 41 SYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDFK-RLR 99 S +N V+ I+G++G+GKSTL + GL KP G I +IG+KQ K K ++ Sbjct 27 SLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKI-----FIGEKQVNFKSSKDAVK 81 Query 100 KTISIVFQFPEYQLFKD-TVEKDIMFG--------PIALGQSKNEARQKAAYYLEKMGLK 150 I +V Q ++L ++ TV +I+ G P+ + + +EA+ K +EK G+ Sbjct 82 HKIGMVHQ--HFKLIENYTVLDNIILGNESRFGFLPL-INRKVSEAKIKT--IMEKYGI- 135 Query 151 YTFLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDAKASG 210 + L++ L+ GQ++RV I +L + +LIFDEPTA L + +++I + K G Sbjct 136 FVDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIANFKKLG 195 Query 211 RTVFMITHQMENVLEVADEVLVLSKGQLVKSGD 243 +T+ +I+H++ + +VAD VL G++V S D Sbjct 196 KTIVLISHKLNEIKQVADTATVLRLGKVVGSFD 228 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 88.2 bits (217), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 63/219 (29%), Positives = 115/219 (53%), Gaps = 13/219 (6%) Query 27 NEKTVHEVKVIDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIG 86 N+ + E+ ++ + S A ++ I+G SGSGK+TL+N G + G V + + Sbjct 95 NDDSKQEISILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPL- 153 Query 87 QKQRKIKDFKRLRKTISIVFQFPEYQLFKDTVEKDIMFGPIALGQS---KNEARQKAAYY 143 +K + + + V+Q Y L +E + IA+ Q+ K + R Sbjct 154 EKCTSEQLLTYRKNNLGYVYQ--RYNL----IELLSAYDNIAISQNLIPKYQRRLDIEEL 207 Query 144 LEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLI 203 EK+ +K L + P+E+SGGQK+RVAIA + EP++L+ DEPT LD ++ L+ Sbjct 208 AEKLDIK-EILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLL 266 Query 204 KDA-KASGRTVFMITHQMENVLEVADEVLVLSKGQLVKS 241 + K +T+ M+TH + ++ +A+ ++ +S G++V + Sbjct 267 QTINKTYKQTILMVTHDV-SLTRIANRIIKISDGKIVSN 304 >gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length=253 Score = 84.3 bits (207), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/217 (30%), Positives = 109/217 (50%), Gaps = 18/217 (8%) Query 36 VIDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDF 95 +++ S+ +IG +GSGKSTLV G +K G I+ D K+ F Sbjct 1 MLNQISFNVQDGCHLAVIGHNGSGKSTLVKLLGGFLKAKKGTIFFND-----KELTSVGF 55 Query 96 KRLRKTISIVFQFPEYQLFKDTVEKDIMFGPIALGQSKNEARQKAAYYLEKMGLK---YT 152 + I I+ Q P+ QL DT+ ++++F G +E + L + LK +T Sbjct 56 NK----IGILLQDPDVQLLADTLHQELIFTLENHGVLASEMDKIINEVLTVVELKDKQFT 111 Query 153 FLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDA-KASGR 211 L++ LS G+K+R A +LA++P++ + DE + LD + ++ + + D K + Sbjct 112 PLKK----LSFGEKQRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNK 167 Query 212 TVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVF 248 V ITH N L +ADE++ LSKG L+K P ++ Sbjct 168 IVINITHDF-NDLFLADEIIFLSKGSLIKKFAPEAIY 203 >gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=623 Score = 85.1 bits (209), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/218 (34%), Positives = 113/218 (52%), Gaps = 25/218 (11%) Query 37 IDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDFK 96 + N S+ F K Y I+G +GSGKS + N GL +P G+I + G+K + I D Sbjct 383 LQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNEGEILIG----GEKIQSI-DSL 437 Query 97 RLRKTISIVFQFPEYQLFKDTVEKDIMFGPIALGQ-------SKNEARQKAA------YY 143 L + I IVFQ + LFK T+ +I G KNEA + AA + Sbjct 438 YLSEMIGIVFQ--QNILFKGTISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTF 495 Query 144 LEKMGLKYTF-LERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRL 202 +EK Y +E+ LSGGQK+RVAIA L +P +L+FD+ + LD E+++ Sbjct 496 IEKFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFDDSMSALDALTEKKVREN 555 Query 203 IK-DAKASGRTVFMITHQMENVLEVADEVLVLSKGQLV 239 I+ D K + + + Q N ++ AD++LV+ G++V Sbjct 556 IENDLKLTTKII---ISQNINSIKHADKILVIDNGRIV 590 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 83.2 bits (204), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 42/118 (36%), Positives = 76/118 (64%), Gaps = 2/118 (2%) Query 132 SKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGL 191 +K E +K + +E +GLK +R P ELSGG K+RVA+A L +EPE+L+ DEP + L Sbjct 320 TKAEQNKKVSDVIEMVGLKGK-EDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSAL 378 Query 192 DPEGEREMMRLIKD-AKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVF 248 D + + + + ++ K SG T ++TH E L ++D ++V+++G +++ G+P +++ Sbjct 379 DAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIY 436 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 77.4 bits (189), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 46/144 (32%), Positives = 76/144 (53%), Gaps = 13/144 (9%) Query 137 RQKAAYYLEKMGLKYTFLERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGE 196 R K L+ +GLK R P E SGGQ++R+AIA L +P+++I DE + LD + Sbjct 661 RNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQ 720 Query 197 REMMRLIKD-AKASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVFMDEAFLA 255 +++ ++KD AK TV I H + V V + ++++ +G++V+ G E+F + Sbjct 721 AQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSN----- 775 Query 256 HTTIIMPPVIQVIKDLINLNPKFS 279 PV + LI +PK S Sbjct 776 -------PVHPYTRSLIKASPKLS 792 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 71.6 bits (174), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 9/190 (5%) Query 51 CIIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDI-YIGQKQRKIKDFKRLRKTISIVFQFP 109 I+G SGSGK+TL+N +G+ + + G + V I RK+ F++ K + +FQ Sbjct 266 VILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTKFRQ--KYVGYIFQ-- 321 Query 110 EYQLFKD-TVEKDIMFGPIALGQSKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKRR 168 +Y L + TV ++I G A Q R LE +G+ + ++ P ELSGGQ++R Sbjct 322 QYGLLPNLTVRENIEIG--ANLQPDPSKRISIDALLEAVGMD-SLQKKLPNELSGGQQQR 378 Query 169 VAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDAKASGRTVFMITHQMENVLEVAD 228 V+IA A P ++ DEPT LD E + +++ K +T +I + +AD Sbjct 379 VSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMIIVTHNNLIANLAD 438 Query 229 EVLVLSKGQL 238 V+ ++ G++ Sbjct 439 LVIYVADGKI 448 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 65.9 bits (159), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 17/193 (9%) Query 52 IIGDSGSGKSTLVNHFNGLIKPAYGDIWVKDIYIGQKQRKIKDFK--RLR-KTISIVFQF 108 I+G SGSGK++L++ + L +P GD +V G D K LR K + +FQ Sbjct 87 ILGKSGSGKTSLLSLISALDRPTSGDSFV----CGTNTICCSDAKLTALRNKNVGYIFQ- 141 Query 109 PEYQLFKD-TVEKDIMFGPIALGQSKNEARQKAAYYLEKMGLKYTFLERNPFELSGGQKR 167 +Y L +D V+ +I +AL K ++ + +LSGGQ++ Sbjct 142 -QYGLLRDLDVDDNI---KLALPLKKRFNNNLEELLERLELKEHR--HKKVHKLSGGQQQ 195 Query 168 RVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMR-LIKDAKASGRTVFMITHQMENVLEV 226 RVAIA L EP++L DEPT ++ + +++++ ++ + G T+ ++TH E ++E+ Sbjct 196 RVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIVTHN-EKIVEL 254 Query 227 ADEVLVLSKGQLV 239 A V+ + G+++ Sbjct 255 AKRVIKIHDGKII 267 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 64.3 bits (155), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/299 (24%), Positives = 120/299 (40%), Gaps = 74/299 (25%) Query 11 LRDGEILSVSNLSCFFNEK--TVHEVKVIDNFSYTFAKNKVYCIIGDSGSGKSTLVNHFN 68 L+D IL +++L F K +H V+ ID + + I+G+SGSGKS V Sbjct 16 LKDNLILDITDLHVNFKVKDGILHAVRGID---LKVERGSIVGIVGESGSGKSVSVKSII 72 Query 69 GLIKPAYGDIWVKDIYIGQKQRKIKDFKRLRKTISIVFQFPEYQ-LFKDTVEKDIMFG-- 125 G A Q + K+ +FK + T Q+ Y+ + + +D +F Sbjct 73 GFNDNA------------QTKAKLMNFKNVDITKLKKHQWKYYRGTYVSYISQDPLFSLN 120 Query 126 -PIALGQSKNEA---RQKAAYYLEKMGLKYTF---------------------------- 153 + +G+ EA K Y+ K LK+ Sbjct 121 PTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPI 180 Query 154 ---------------------LERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLD 192 L+ P E SGG ++R+ IA +A EP+++I DEPT LD Sbjct 181 NVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALD 240 Query 193 PEGEREMMRLIKDAK-ASGRTVFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVFMD 250 + +++ LIK + T+ I+H + + D V V+ G++V+ G E+F + Sbjct 241 VTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTN 299 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 64.3 bits (155), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 59/100 (59%), Gaps = 1/100 (1%) Query 154 LERNPFELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKDAKASGR-T 212 L + P ++SGGQ++RVAIA + P++L+ DEP + LD + + + I+ + + T Sbjct 361 LTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQIT 420 Query 213 VFMITHQMENVLEVADEVLVLSKGQLVKSGDPYEVFMDEA 252 +TH E + ++D ++ +S G++ + G P E+++ A Sbjct 421 TVFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPA 460 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 59.3 bits (142), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query 160 ELSGGQKRRVAIAGILAIEPEVLIFDEPTAGLDPEGEREMMRLIKD-AKASGRTVFMITH 218 +LS GQK+RV IA + P++L+ DEPT GLDP ++M LI D K T+ +TH Sbjct 146 DLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDLITDFVKREKITLVFVTH 205 Query 219 QMENVLEVADEVLVLSKGQLV 239 ++ L+ + ++ L LV Sbjct 206 DIDLALKYSTRIIALKNHALV 226 Lambda K H a alpha 0.321 0.139 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33097417 Query= gi|13507934|ref|NP_109883.1| similar to cobalt transport membrane protein [Mycoplasma pneumoniae M129] Length=434 Score E Sequences producing significant alignments: (Bits) Value gi|12045034|ref|NP_072844.1| hypothetical protein MG181 [Mycoplas... 597 0.0 gi|12045158|ref|NP_072969.1| hypothetical protein MG302 [Mycoplas... 65.5 1e-13 >gi|12045034|ref|NP_072844.1| hypothetical protein MG181 [Mycoplasma genitalium G-37] Length=420 Score = 597 bits (1539), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/431 (74%), Positives = 373/431 (87%), Gaps = 13/431 (3%) Query 1 MDSFFINGYVPRDTFIHRLHPTTKLLIFLLFVILVFVPIGFVFQSVIFVFATVIFFVAKL 60 MD+F INGY+PR++F+H+LHPTTKL+IFLL VILVFVPIGFVFQSVIF+F T +FF+AKL Sbjct 1 MDNF-INGYIPRNSFVHKLHPTTKLVIFLLLVILVFVPIGFVFQSVIFLFVTFVFFIAKL 59 Query 61 PGRFYLSSIKSISLLFLLLLFVNWFTFRDPGFYITADQVNTVKPHFNGNNFNFWNISLFN 120 PGRFY S+IKSI+LLFLLLLFVNWFTFRDPGFY+T+DQ+N++ P + + F+FWNISLFN Sbjct 60 PGRFYSSAIKSITLLFLLLLFVNWFTFRDPGFYLTSDQLNSL-PAIDNSKFSFWNISLFN 118 Query 121 YQDNVFSQVFNFNRANMTELNKINFFFKETANANAYTKVTGIDKLAEMLASKNLFKFNGS 180 YQDNVFSQVF FNR N+T LN+++FF+K NA++YTKV GID LA MLA+ NG Sbjct 119 YQDNVFSQVFAFNRGNLTNLNQLDFFYKAN-NADSYTKVKGIDSLASMLAN------NG- 170 Query 181 TNGIDKNKILGAFLDHKIAVYLGRSWGGDFSGFVIDVSVSDKTSTFTIKPFLANSNYVLT 240 NG+ K+KIL AFLDH + +YL RSWG +F+GFV+D + + T F + PFLAN++YVLT Sbjct 171 -NGLSKDKILSAFLDHNLNLYLARSWGANFAGFVVDFNPT--TQLFKLTPFLANASYVLT 227 Query 241 LRAIILAFYVTQKILIMIILATVLTSTSSSVELAYGIERLLWPLKLLRVPVNVFAMTIAI 300 LRA+ILAFYVTQKILIMI+ ATVLTSTSSSVELAYGIERLLWPLKL+++PVNVFAMTIAI Sbjct 228 LRAVILAFYVTQKILIMILFATVLTSTSSSVELAYGIERLLWPLKLIKIPVNVFAMTIAI 287 Query 301 AIRFVPSLLLESQRILNAQASRGLDFKNGNFFVKMRSLSSLVVPMISIAFRNAGELASAM 360 AIRFVPSLLLESQRILNAQASRGLDF+NG F VKMRSLSSLVVPM+SIAFRNA ELASAM Sbjct 288 AIRFVPSLLLESQRILNAQASRGLDFRNGGFLVKMRSLSSLVVPMVSIAFRNASELASAM 347 Query 361 EARGYDPTKKRTTYRKFKIDWVDATALILTALYFVVIIFLTVKGAVFLDLGTPEWLLTGK 420 EARGY P KKR++YR++KI W+D AL L +FVVIIFLT++GAVFLDLGTPEWLLTGK Sbjct 348 EARGYHPAKKRSSYRQYKITWIDILALFLVFAWFVVIIFLTIRGAVFLDLGTPEWLLTGK 407 Query 421 IKEQVERSLSV 431 I EQV R L V Sbjct 408 INEQVIRDLKV 418 >gi|12045158|ref|NP_072969.1| hypothetical protein MG302 [Mycoplasma genitalium G-37] Length=317 Score = 65.5 bits (158), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 39/146 (27%), Positives = 77/146 (53%), Gaps = 1/146 (1%) Query 235 SNYVLTLRAIILAFYVTQKILIMIILATVLTSTSSSVELAYGIERLLWPLKLLRVPVNVF 294 S + LR+ + +F + +I ++ + +LT++SS ELA+ +ER LKL + V Sbjct 108 SWWSFNLRSFLRSFVIALRISMLFSASFLLTTSSSIYELAWAVERFFKFLKLFHIKVQPI 167 Query 295 AMTIAIAIRFVPSLLLESQRILNAQASRGLDFKNGNFFVKMRSLSSLVVPMISIAFRNAG 354 ++ +A+ + +P++ E RI AQA+RG + +F + + +L +P++ + Sbjct 168 SILLAVIFKLLPTVKSEIIRIKQAQATRGFIYNKCSFLNPFK-IKTLFIPVLLSTVKKTE 226 Query 355 ELASAMEARGYDPTKKRTTYRKFKID 380 A A++A+GYD T+ K + Sbjct 227 TTAFALQAKGYDLNNTNRTHYPLKYN 252 Lambda K H a alpha 0.328 0.141 0.415 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 50755517 Query= gi|13507935|ref|NP_109884.1| pseudouridylate synthase I [Mycoplasma pneumoniae M129] Length=243 Score E Sequences producing significant alignments: (Bits) Value gi|12045035|ref|NP_072845.1| pseudouridylate synthase I (hisT) [M... 300 2e-105 >gi|12045035|ref|NP_072845.1| pseudouridylate synthase I (hisT) [Mycoplasma genitalium G-37] Length=244 Score = 300 bits (767), Expect = 2e-105, Method: Compositional matrix adjust. Identities = 143/243 (59%), Positives = 179/243 (74%), Gaps = 0/243 (0%) Query 1 MPRYLAIVAYNGAPFRGWAKQPGYHTVQGQIEQNLALIYQTPINIYGSGRTDKGVHAINQ 60 M RYL IV+Y+G+ F+GWA QP T+QG +EQ+ +LI I + GSGRTDKGVHAINQ Sbjct 1 MARYLGIVSYDGSYFKGWAIQPNLATIQGLLEQSFSLIIGRKIKVIGSGRTDKGVHAINQ 60 Query 61 TFHVDLPDKLPLKQLIAKLNQLNYPDIFVKALVPVAPRFHARFAVKTKVYEYLINTRAFN 120 TFHVD+ ++ L LI K+NQL P VK LV V FHARF VKTKVYEYLIN N Sbjct 61 TFHVDINGEINLNLLIRKINQLIKPHCIVKTLVLVNDSFHARFQVKTKVYEYLINCGNLN 120 Query 121 PAQYHTVWQYNHPLDLAQLEADTTLFLGRKDFWSFSTASQKDTQRTISKIIVQQDHTGTV 180 P Q++ VWQ N LDL +L+AD TLFLG+K+F SFS++ D+ RTISKI +Q++ V Sbjct 121 PLQFNYVWQLNQQLDLEKLKADATLFLGKKNFLSFSSSIHTDSIRTISKITIQKETNQLV 180 Query 181 KLTFFGNGFLRNQIRMMVASLVALNNRTLMRETVQQLFDQPQKGGCKVKAPACGLYLKTV 240 +LTFFG+GFLR+Q+RM+VA LV LN + ETV +LF+ P+KG C VKAP+CGLYLKTV Sbjct 181 RLTFFGSGFLRSQVRMIVACLVNLNTNKMALETVAKLFEHPKKGSCVVKAPSCGLYLKTV 240 Query 241 LYE 243 +YE Sbjct 241 VYE 243 Lambda K H a alpha 0.323 0.137 0.417 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 25027975 Query= gi|13507936|ref|NP_109885.1| oligoendopeptidase F [Mycoplasma pneumoniae M129] Length=611 Score E Sequences producing significant alignments: (Bits) Value gi|12045036|ref|NP_072846.1| oligoendopeptidase F (pepF) [Mycopla... 828 0.0 >gi|12045036|ref|NP_072846.1| oligoendopeptidase F (pepF) [Mycoplasma genitalium G-37] Length=607 Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/607 (64%), Positives = 492/607 (81%), Gaps = 1/607 (0%) Query 1 MNNQYNWNLEVLLNGKSLADNFTELKQLSEQEKALYDGGACFQTKAKFTEFLQLQEKIEV 60 M N Y W+L VLLN +SL NF +++ +SE Y+ G CF K F +FL + +K Sbjct 1 MKNSYKWDLSVLLNNQSLQANFLKIQTVSEALIKAYNNGLCFTNKTSFEQFLAIDDKFTE 60 Query 61 LENRYSNFLSNKHAENSLDKTINDALFQYEMFKSEHALVFVDFEKNLFKHEKVIRAYLQD 120 LENRY+N+L NK EN+LDK +NDA+F Y+ FK+ H L F ++ L+ HEK+I+ YL D Sbjct 61 LENRYTNYLYNKQNENNLDKEVNDAIFAYQSFKNNHNLAFSTLQQELYNHEKLIKDYLTD 120 Query 121 PALKQYQRDFELVWRNKKHQIDPASQKLLAQISPAWNQADKIFNVLSTADLNLQPVVYKG 180 P L Y+R+ LV+R+K HQ+ +Q LL+QI+P +NQA++IFN+LSTADLNLQPVVY+ Sbjct 121 PKLAVYKRNLMLVFRDKPHQLSSQTQSLLSQINPCFNQAERIFNILSTADLNLQPVVYQN 180 Query 181 KTYVINAVSDYQSLLENKDRGLREAAYKVWLEIYWPTRNTLSVSLVENYIQLETFAKLKK 240 K Y IN+VSDYQSLLEN +RG+R+A Y+ W+EIYW RN+LS+SLVENYIQLE FAKLK Sbjct 181 KKYPINSVSDYQSLLENTNRGIRKACYEKWIEIYWTNRNSLSLSLVENYIQLENFAKLKN 240 Query 241 HPNYIAKTAFDDEIDVAFIDFVYEQVASFAPTFKAFQSLRKQIYKHVLKLDKAQPWDLSV 300 HP+YIA+TAF+DEI+V FIDFVY+QVA FA TF+AF L+KQIYKHVLK++K +P+DL++ Sbjct 241 HPSYIAQTAFNDEIEVGFIDFVYQQVAQFAKTFQAFIRLKKQIYKHVLKVNKVEPYDLTL 300 Query 301 PLFKASGDYTIEQAQTDALKILAPMGSEYLEVVKEAFRERWISWLPDKNKYTGAYSISNV 360 LFK YTIEQA+ DALK+L +G Y+++VK+AF E WI WL DKNKYTGAYSISNV Sbjct 301 TLFKTKKSYTIEQAKQDALKVLDLLGDNYIKIVKKAFNENWIDWLADKNKYTGAYSISNV 360 Query 361 KGLDHYFILMNFDKTRASLNTLVHELGHSVHSWYASKYQTQNLDPTIFYAEIASICNELL 420 KGL+H+FILMNFDKT++SLNTLVHELGHSVHSWYAS++Q+QN+DPTIFYAEIASI NELL Sbjct 361 KGLEHFFILMNFDKTKSSLNTLVHELGHSVHSWYASQHQSQNIDPTIFYAEIASIANELL 420 Query 421 LCYHDIINYENRNPQQLIRSLMEQISHFFGATTRQLMFSQFEQDTLKLIQQNQKPDFKTL 480 LCY+++ Y+N N +QLI SL+ QI+HFFGATTRQ+MFSQFE+DTL LI+ NQKPDFKTL Sbjct 421 LCYYELQLYKN-NHKQLIASLLSQINHFFGATTRQIMFSQFEKDTLYLIRVNQKPDFKTL 479 Query 481 VEIYGKTAIKYQAANADAITKKLKQTKYQKSLAYITSIPHFYAGNFYVYKYAIGQVVGTL 540 ++IY TA+KYQ + + KLK+T+YQKSL++I +IPHFYAGNFYVYKYAIGQV G L Sbjct 480 IKIYANTAVKYQGFKPEVVANKLKKTQYQKSLSHIIAIPHFYAGNFYVYKYAIGQVAGIL 539 Query 541 VGKKLSAGDSNMLAAYKRFLSSGSTLPPLETIKLLGIDLTQPEPWQEAHAELKRWIKLVQ 600 V KK+++GD M Y +FLSSGS+L PLETIKLLGIDLT P+PWQEAH E+KRW+K+V+ Sbjct 540 VAKKINSGDKKMKDNYFKFLSSGSSLAPLETIKLLGIDLTSPQPWQEAHNEVKRWLKIVK 599 Query 601 TAFKQLQ 607 +FK+LQ Sbjct 600 QSFKKLQ 606 Lambda K H a alpha 0.319 0.133 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 74442575 Query= gi|13507937|ref|NP_109886.1| adenine-specific methyltransferase EcoRI [Mycoplasma pneumoniae M129] Length=319 Score E Sequences producing significant alignments: (Bits) Value gi|12045037|ref|NP_072847.1| adenine-specific DNA modification me... 396 5e-141 >gi|12045037|ref|NP_072847.1| adenine-specific DNA modification methylase [Mycoplasma genitalium G-37] Length=317 Score = 396 bits (1017), Expect = 5e-141, Method: Compositional matrix adjust. Identities = 195/316 (62%), Positives = 242/316 (77%), Gaps = 0/316 (0%) Query 1 MHYFNRAKKAKNNEFYTLFEDIAAEVACYPNAFKGKVVLCNCNDGYQSNFWQFFQSQFHA 60 MH+FNRAKKAKNNEF+TL ++I EV Y F K + CNCNDG S+F+QFFQ+ F+ Sbjct 1 MHHFNRAKKAKNNEFFTLIDEIENEVINYQKQFANKTIFCNCNDGKNSHFFQFFQTNFNQ 60 Query 61 LGLKKLVAIAFNPLGNSYQLNFDGKEIKELPLAGNGSFDSAEAIVLLKQSDIVVTNPPFS 120 L LKKL+ +FN L + + FDG ++ + L GNG F S E+I +LKQ+DIVVTNPPFS Sbjct 61 LQLKKLIGFSFNNLSQADKFTFDGNKVTKTKLKGNGDFSSDESIEVLKQADIVVTNPPFS 120 Query 121 LFQDFVCLLAEHGKQFLVLGHNGAVGYNQIFKLFKEEQLWYGHTVNSSMLFQVQSNFKLY 180 LFQ F+ LL +H KQFLVLG N AV YN IF FK +LW+G+TVN +M F V S+++LY Sbjct 121 LFQSFIDLLIQHNKQFLVLGLNAAVSYNHIFTYFKTNKLWFGYTVNKTMSFSVNSDYQLY 180 Query 181 DPKSVNFVKKDGQLFQKVPGISWFTNLKKNQQPAWLKTKSRYQGNEHKYPKFDWYDAIFV 240 +PK+ NF K+G+ FQK+ GISWFTNL K +L T Y+ NE YPKFDWYDAI+V Sbjct 181 NPKTSNFFTKNGKCFQKIAGISWFTNLGKPHYNPFLNTNCFYKNNEKNYPKFDWYDAIYV 240 Query 241 SKVKEIPLDWFGYMGVPLTFLNCFNPKQFELIDCLANPYATLDTLKTNAYVRSHHGDVRN 300 +K+K IP+DW G MGVPLTFLNC+NPKQFEL+DCLANPYATLDTLKTNA+V+ + GDVRN Sbjct 241 NKIKNIPMDWNGLMGVPLTFLNCYNPKQFELVDCLANPYATLDTLKTNAFVKLNQGDVRN 300 Query 301 VKGKRRYVRVVIKQRQ 316 V GKRRYVRV+IK++Q Sbjct 301 VNGKRRYVRVIIKKQQ 316 Lambda K H a alpha 0.323 0.139 0.435 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35370201 Query= gi|13507938|ref|NP_109887.1| hypothetical protein MPN199 [Mycoplasma pneumoniae M129] Length=760 Score E Sequences producing significant alignments: (Bits) Value gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 475 3e-160 gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 473 3e-158 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 475 bits (1223), Expect = 3e-160, Method: Compositional matrix adjust. Identities = 249/458 (54%), Positives = 323/458 (71%), Gaps = 22/458 (5%) Query 245 TNKTTEGTLKIGTDDNTKNLWKKIEDAAKTNGEKGNEKQEATQSNASASLVKLDQKNTSQ 304 +N + +GT+ + +D T +LW K+E AAK N + NE Q +SN+S S Sbjct 189 SNNSNKGTMVVASDSETSSLWTKLEAAAKMNAQT-NETQ-VLKSNSSES----------- 235 Query 305 DKTQNTQTSDDEIKKSWGEYKEVEGGLKGYEFKADVFESWEKLNDFAVRVAKSFSKVSEE 364 TQ SD EIKK WG+Y+EV+GGLK Y FKA VF +W+ LNDFA R+AKSF+K+ Sbjct 236 ---NQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLNDFATRIAKSFTKLQTT 292 Query 365 KKSGSDIQGVFGIGSLENALYTASFAAGGGDYNNFLFNIKKGRADFSNFFNHNSKTFQSL 424 K G ++Q VFGIGSLENALYTA FA+G DYNNFLFNIK R +FSNFFN +S FQ+L Sbjct 293 TKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRINFSNFFNKSSTAFQNL 352 Query 425 RDIFNSFKPLIDQKGLISNKHFDTPVNNYAKFHQLAFYVSSTARFPYSFAKDNVKRLIIG 484 + IFNSFK LIDQ GLISN HF+TPVN+YAKF+QLAFY SSTARFPYSFA D+VKRLI+ Sbjct 353 KTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTARFPYSFASDSVKRLIVN 412 Query 485 KRELE-VNPKSMFAIKKENGNNGNSNLLGKVALDNNKSIELYENNIPNGK---TDAILIK 540 + +E N KS+F + + ++ NSNL+G V+L+N+K + LYE + + K DA+LIK Sbjct 413 DKTIENKNNKSVFEVNLSSDSDNNSNLIGTVSLENSKQVSLYEKQVDSNKQIGVDALLIK 472 Query 541 NQTLISALKNPKQTKSSQRSSQSTNTQNDAICYLAFNSKIRPDDKDIFLLDKFGEKFVTA 600 ++TLI+ LK+ K S++ +S+++ T+ + +LAF + + D K IF + K K Sbjct 473 DETLINHLKSLKSQVSAKSASETSQTKQNK-TFLAFTT-VNADQKAIFDVGKLNGKTAKI 530 Query 601 IVNFEEKTEVKINTLQEKEAVVLPAPQKFKPTDPKSVALVQGPSLIGIHANANEDRSTIK 660 I+N E T KI+TLQEKEA+VL APQ+F+ TDP +ALVQGPSLIGIHAN ED T K Sbjct 531 IINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKK 590 Query 661 FLNWYLNAEVDWKDGEKKTPAEYLAEKASYLLPFKKVL 698 F+NWYLN +V W++ KTPAEY+A+KASYLLPFK L Sbjct 591 FVNWYLNTKVQWEENSIKTPAEYVADKASYLLPFKNRL 628 Score = 241 bits (616), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 138/232 (59%), Positives = 164/232 (71%), Gaps = 9/232 (4%) Query 1 MKFKLF-LGSSFFG-VATLLIAC-GTGRFDQIDDGKIKLAVVTSPSAASSLQTLLDQYNN 57 MKFKLF L SS G +A AC RFDQ+DDGKIKLA VTS SA+ SL T++ +YN+ Sbjct 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLATVTSASASGSLTTIISKYNS 60 Query 58 TKAPADYPVEVVSLDSTGSYTKGKFDTQKRLAAKDKNNFYNLTFNYPDLVSSLAINGMEL 117 K P DYPVE+VSLDS GSY+ GK D Q +L AKDKNNFYNLTFNY D+VS L+ + MEL Sbjct 61 QKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQMEL 120 Query 118 NLDGVNVSNFEQSFLDFNKNISGVRKPGIYALPATMSGEVLVLNGPVLHYILNSAKKKDG 177 + D V+ SNF+ SFL FN NIS V IYALPAT+SGEVLVLNGPVLHYIL+SAKK Sbjct 121 SFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDSN 180 Query 178 TESKIKTAQLKTASTQAEVKGTMTMASDEQTTKLWTNIQNAAKENAANGTTE 229 T T +AS + KGTM +ASD +T+ LWT ++ AAK NA T+ Sbjct 181 T-----TLSTHSASNNSN-KGTMVVASDSETSSLWTKLEAAAKMNAQTNETQ 226 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 473 bits (1216), Expect = 3e-158, Method: Compositional matrix adjust. Identities = 303/723 (42%), Positives = 418/723 (58%), Gaps = 92/723 (13%) Query 1 MKFKLFL--GSSFFGVATLLIACGT-GRFDQIDDGKIKLAV-VTSPSAASSLQTLLDQYN 56 MK K FL G S FG + LL+AC +FDQ+DDGKIKLA +TS AA +L+T++ +YN Sbjct 1 MKLKGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYN 60 Query 57 NTKAPADYPVEVVSLDSTGSYTKGKFDTQKRLAAKDKNNFYNLTFNYPDLVSSLAINGME 116 +TK P DYP+E+V + G Y GK D Q +++ KDKNNFYNL NYP++VS+L+ + M Sbjct 61 DTKDPGDYPIEIVQI--AGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMA 118 Query 117 LNLDGVNVSNFEQSFLDFNKNISGVRKPGIYALPATMSGEVLVLNGPVLHYILNSAKKKD 176 LN DGVNV +FL FN I G+R GIYA+P +MS +++V+NGPVLHYILNSA+K + Sbjct 119 LNFDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARK-E 177 Query 177 GTESKIKTAQLKTASTQAEVKGTMTMASDEQTTKLWTNIQNAAKENAANGTTEKAEKTVS 236 GT T+ + TVS Sbjct 178 GTP-----------------------------------------------TSTTVQATVS 190 Query 237 ASSLQLKNTNKTTEGTLKIGTDDNTKNLWKKIEDAAKTNGEKGNEKQEATQSNASASLVK 296 + S + K GTL+I D T LW+ I+ A+ N + ++Q+ + ++S+S Sbjct 191 SRSAEKK-------GTLEIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSS--- 240 Query 297 LDQKNTSQDKTQNTQTSDDEIKKSWGEYKEVEGGLKGYEFKADVFESWEKLNDFAVRVAK 356 ++ +T++T SD++IK+ WGEY+EV+GGLK + FKA +FE+W + DFA R+A Sbjct 241 --STTSTTGETKDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDFATRIAN 298 Query 357 SF-SKVSE-EKKSGSDIQGVFGIGSLENALYTASFAAGGGDYNNFLFNIKK--GRADFSN 412 SF KV K+G D+QGV G+ S NALY A FAAG +Y+NF FNI K G AD+SN Sbjct 299 SFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYADYSN 358 Query 413 FFNHNSKTFQSLRDIFNSFKPLIDQKGLISNKHFDTPVNNYAKFHQLAFYVSSTARFPYS 472 F N +S ++Q+L ++N F LI GL N+ + +N+ KFHQLAF VSS+ + Y Sbjct 359 FLNKDS-SYQNLESVYNDFYKLIQANGLFVNRG-GSYSSNFEKFHQLAFSVSSSGGYSYY 416 Query 473 FAKDNVKRLIIGKRELEVNPKSMFAIKKENGNNGNSNLLGKVALDNNKSIELYENNIPNG 532 FAKDN KRL +E P I+ N + SNLLG L + K I LY+ +IP+G Sbjct 417 FAKDNAKRLKFSNYAIEY-PSFTQTIQAPNSSETESNLLGTFKL-SEKDINLYKGSIPSG 474 Query 533 K---TDAILIKNQTLISALKNPKQTKSSQRSSQSTNTQNDAICYLAFNSKIRPDDKDIFL 589 K DAILI N LI+ L+ KQ ++Q S +TN I + + D+++IF Sbjct 475 KQQGVDAILISNPNLINILEQAKQKNTAQGSESTTN----KIIGYTTTANVNVDNQNIFS 530 Query 590 LDKFG-EKFVT-AIVNFEEKTEVKINTLQEKEAVVLPAPQKFKPTDPKSVALVQGPSLIG 647 + K E+F IVN E+T + TLQ E++VLP P K+K TD V + QGP+LIG Sbjct 531 VSKLNNEQFQRKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIG 590 Query 648 IHANANEDRSTIKFLNWYLNAEV-DW--------KDGEKKTPAEYLAEKASYLLPFKKVL 698 IHAN E+ T KF+NW+LN + DW D KT AEY ++ASY+LP K+ Sbjct 591 IHANEKENIETKKFVNWFLNQSITDWNSNNQQKNSDQTTKTAAEYFTDQASYILPLKEKF 650 Query 699 EKS 701 KS Sbjct 651 NKS 653 Lambda K H a alpha 0.311 0.128 0.357 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 94705463 Query= gi|13507939|ref|NP_109888.1| hypothetical protein MPN200 [Mycoplasma pneumoniae M129] Length=798 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 696 0.0 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 502 4e-170 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/846 (47%), Positives = 528/846 (62%), Gaps = 129/846 (15%) Query 1 MKFKYGAIVFSGLLGVSAILAACGTRGKFDQIDDGKIKLASSLTSKGAANALQAIVKKYN 60 MK K V + G S +L AC +FDQ+DDGKIKLASSLTSK AA AL+ +VKKYN Sbjct 1 MKLKGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYN 60 Query 61 EVKKPGDYPIEITQIAGGYDQARVDLQSRVGVKDKTNFYNLILNYPDVVSVLARNQMELP 120 + K PGDYPIEI QIAGGYD + D+Q++V KDK NFYNLILNYP++VS L+R++M L Sbjct 61 DTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALN 120 Query 121 FDGVDVSKISPNFLNFNERISGVSKKANYAIPVSVSTDILVLNGPVLHYILNSAKGE--- 177 FDGV+V K+ PNFL+FN RI G+ YAIP+S+STD++V+NGPVLHYILNSA+ E Sbjct 121 FDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTP 180 Query 178 -SKGAQKDNKSAEVQRKSTGQKTVTQPLTIATDSATNGLWKKIEDAAKVNGKK--KEEKK 234 S Q S ++K T L IA DS T LW+ I+ A+ N + KE+K+ Sbjct 181 TSTTVQATVSSRSAEKKGT--------LEIANDSETTKLWQNIQTTAQNNSNETTKEQKQ 232 Query 235 STRSKRATEGTQTTKENTGGDAATSDTKIKESWGAYQEVEGGLKGYQFKAIVFENWHDLI 294 RS ++ T TT E D SD KIKE WG YQEV+GGLK + FKA +FENW++ + Sbjct 233 VKRSSSSSSTTSTTGETK--DTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETL 290 Query 295 DFSTRVAKSF-SKVKDNSNKKGNEIQGVLGVDNSPNALLSSVFAAGNSDYNNFFYKV--Q 351 DF+TR+A SF KVK+ +NK G ++QGVLGVD+S NAL ++VFAAG ++Y+NFF+ + + Sbjct 291 DFATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKR 350 Query 352 NGRADFSNFNNKGSSYKNLKNVFNDYKNLIAQNGLYVNKGGSYSSNFQKFHQLAYSISST 411 G AD+SNF NK SSY+NL++V+ND+ LI NGL+VN+GGSYSSNF+KFHQLA+S+SS+ Sbjct 351 TGYADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSS 410 Query 412 SGFAYSFAGQNSKRFKFTDDGTFVEYPSYTTEVNAPESNNGNDGKQQGQSDQGNLLGTFE 471 G++Y FA N+KR KF++ +EYPS+T + AP S+ + NLLGTF+ Sbjct 411 GGYSYYFAKDNAKRLKFSNYA--IEYPSFTQTIQAPNSS----------ETESNLLGTFK 458 Query 472 VVDKSTSDIKVKPKTQAESKKSSDSKQTANTGKGSNSKQQTPKKTISLYKTKIPQDKTEN 531 + +K I+LYK IP K + Sbjct 459 LSEKD----------------------------------------INLYKGSIPSGKQQG 478 Query 532 VDAFLVTDSELISKLEKAKNKKEETKASGKSASARVAVQATQKKQSNEKQIVGYTTTSAL 591 VDA L+++ LI+ LE+AK K Q +S +I+GYTTT+ + Sbjct 479 VDAILISNPNLINILEQAKQK-----------------NTAQGSESTTNKIIGYTTTANV 521 Query 592 SEDGKHIFKLGKLNSENYERKIIVGATVETLEQSTTLQSEEAIVLAAPGKYKDSDQKRVM 651 + D ++IF + KLN+E ++RKIIV AT ETL+QS TLQS E+IVL PGKYK +D+ +VM Sbjct 522 NVDNQNIFSVSKLNNEQFQRKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVM 581 Query 652 ITQGPNLIGVHANTKENEETKKFVNWFLNKT-ESWEVKGNGKDS-QTTKSLTPAQYFAES 709 ITQGPNLIG+HAN KEN ETKKFVNWFLN++ W K+S QTTK T A+YF + Sbjct 582 ITQGPNLIGIHANEKENIETKKFVNWFLNQSITDWNSNNQQKNSDQTTK--TAAEYFTDQ 639 Query 710 ASYILPLKETVEKDH-------------------------------------KEQTNKNT 732 ASYILPLKE K K N NT Sbjct 640 ASYILPLKEKFNKSSDLELKGSSSSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNT 699 Query 733 YVAKALEMLKEVSENKSVSYSDPSDFRSGRFRDALGANFNATINSKANFEKFFQGFKAAL 792 + AKALE+ ++ + N+ + +SDPSDFR+G FR+ + ++FNA +NSK +F +F Q F +L Sbjct 700 FTAKALELFQQAANNEIIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSL 759 Query 793 GSDFDK 798 GS F + Sbjct 760 GSGFRR 765 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 502 bits (1293), Expect = 4e-170, Method: Compositional matrix adjust. Identities = 319/802 (40%), Positives = 452/802 (56%), Gaps = 112/802 (14%) Query 1 MKFKYGAIVFSGLLGVSAILAACGTRGKFDQIDDGKIKLASSLTSKGAANALQAIVKKYN 60 MKFK + S L ++ AC +FDQ+DDGKIKLA+ +TS A+ +L I+ KYN Sbjct 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKYN 59 Query 61 EVKKPGDYPIEITQI--AGGYDQARVDLQSRVGVKDKTNFYNLILNYPDVVSVLARNQME 118 K P DYP+E+ + G Y + DLQ+++ KDK NFYNL NY DVVS+L+R+QME Sbjct 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query 119 LPFDGVDVSKISPNFLNFNERISGVSKKANYAIPVSVSTDILVLNGPVLHYILNSAKGES 178 L FD VD S P+FL+FN IS V+ + YA+P +VS ++LVLNGPVLHYIL+SAK +S Sbjct 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDS 179 Query 179 KGAQKDNKSAEVQRKSTGQKTVTQPLTIATDSATNGLWKKIEDAAKVNGKKKEEKKSTRS 238 + ++ K T + +A+DS T+ LW K+E AAK+N + E Sbjct 180 NTTLSTHSASNNSNKGT--------MVVASDSETSSLWTKLEAAAKMNAQTNE------- 224 Query 239 KRATEGTQTTKENTGGDAAT--SDTKIKESWGAYQEVEGGLKGYQFKAIVFENWHDLIDF 296 TQ K N+ T SDT+IK+ WG YQEV+GGLK Y FKA VF NW DL DF Sbjct 225 ------TQVLKSNSSESNQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLNDF 278 Query 297 STRVAKSFSKVKDNSNKKGNEIQGVLGVDNSPNALLSSVFAAGNSDYNNFFYKVQNGRAD 356 +TR+AKSF+K++ + KKG E+Q V G+ + NAL +++FA+G +DYNNF + ++N R + Sbjct 279 ATRIAKSFTKLQ-TTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRIN 337 Query 357 FSNFNNKGSS-YKNLKNVFNDYKNLIAQNGLYVNKGGSYSSN-FQKFHQLAYSISSTSGF 414 FSNF NK S+ ++NLK +FN +K+LI QNGL N + N + KF+QLA+ SST+ F Sbjct 338 FSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTARF 397 Query 415 AYSFAGQNSKRFKFTDDGTFVEYPSYTTEVNAPESNNGNDGKQQGQSDQGNLLGTFEVVD 474 YSFA + KR D + EVN ++ N NL+GT + Sbjct 398 PYSFASDSVKRLIVNDKTIENKNNKSVFEVNLSSDSDNN----------SNLIGTVSL-- 445 Query 475 KSTSDIKVKPKTQAESKKSSDSKQTANTGKGSNSKQQTPKKTISLYKTKIPQDKTENVDA 534 NSKQ +SLY+ ++ +K VDA Sbjct 446 -------------------------------ENSKQ------VSLYEKQVDSNKQIGVDA 468 Query 535 FLVTDSELISKLEKAKNKKEETKASGKSASARVAVQATQKKQSNEKQIVGYTTTSALSED 594 L+ D LI+ L+ K ++ S KSAS + +Q KQ+ K + +TT +A D Sbjct 469 LLIKDETLINHLKSLK-----SQVSAKSAS-----ETSQTKQN--KTFLAFTTVNA---D 513 Query 595 GKHIFKLGKLNSENYERKIIVGATVETLEQSTTLQSEEAIVLAAPGKYKDSDQKRVMITQ 654 K IF +GKLN + KII+ AT T + +TLQ +EAIVL AP +++ +D + + Q Sbjct 514 QKAIFDVGKLNGK--TAKIIINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQ 571 Query 655 GPNLIGVHANTKENEETKKFVNWFLNKTESWEVKGNGKDSQTTKSLTPAQYFAESASYIL 714 GP+LIG+HAN +E+ ETKKFVNW+LN WE + K TPA+Y A+ ASY+L Sbjct 572 GPSLIGIHANEREDIETKKFVNWYLNTKVQWE-------ENSIK--TPAEYVADKASYLL 622 Query 715 PLKETVEKDHKEQTNKNTYVAKALEMLKEVSENKSVSYSDPSDFRSGRFRDALGANFNAT 774 P K + N N+Y + + ++ +++P+DF S + RD + +N NA Sbjct 623 PFKNRLN-------NTNSYNEFVKTAVSQFADKNVTKFAEPADFLSNKVRDGVKSNLNAA 675 Query 775 INSKA-NFEKFFQGFKAALGSD 795 IN+ + +F+ F LGSD Sbjct 676 INNHSIDFDSFINDLTDYLGSD 697 Lambda K H a alpha 0.308 0.125 0.341 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 99487440 Query= gi|13507940|ref|NP_109889.1| hypothetical protein MPN201 [Mycoplasma pneumoniae M129] Length=238 ***** No hits found ***** Lambda K H a alpha 0.322 0.139 0.414 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24312890 Query= gi|13507941|ref|NP_109890.1| hypothetical protein MPN202 [Mycoplasma pneumoniae M129] Length=313 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 176 2e-51 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 176 bits (447), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/209 (51%), Positives = 137/209 (66%), Gaps = 22/209 (11%) Query 30 QVQTSGQNLSDTNYTNLSPNFTPTSDWPNALSFTNKNNAQRAQLFLHGLLGSIPVLVNKS 89 +V SG + T Y L + +PTSDW NAL+FTNKNN QR QL L LLG+IPVL+NKS Sbjct 867 KVTPSGGSSKPTTYPALPNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLINKS 926 Query 90 GENNEKF-QATDQKWSYTELKSDQTKLNLPAYGEVNGLLNPALVETY--FGTTRTSSTAN 146 G++N++F + ++QKW TE NLP +GEVNGL N AL+ TY FGT N Sbjct 927 GDSNDQFNKDSEQKWDKTETNEG----NLPGFGEVNGLYNAALLHTYGFFGT-------N 975 Query 147 QNSTTVPGIGFKIPEQNNDSKAVLITPGLAWTPQDVGNLVV-SGTSFSFQLGGWLVSFTD 205 NST P IGFK + ++ S + L+ GL WT QDVGNLVV + TSF FQLGGW ++FTD Sbjct 976 TNSTD-PKIGFKA-DSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTD 1033 Query 206 FVKPRAGYLGLQLTGLDASDATQRALIWA 234 F++PR GYLG+ L+ L + +IWA Sbjct 1034 FIRPRTGYLGITLSSLQ-----DQTIIWA 1057 Lambda K H a alpha 0.312 0.131 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 34517907 Query= gi|13507942|ref|NP_109891.1| hypothetical protein MPN203 [Mycoplasma pneumoniae M129] Length=127 ***** No hits found ***** Lambda K H a alpha 0.316 0.132 0.444 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9662730 Query= gi|13507943|ref|NP_109892.1| hypothetical protein MPN204 [Mycoplasma pneumoniae M129] Length=148 ***** No hits found ***** Lambda K H a alpha 0.309 0.127 0.337 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12362145 Query= gi|13507944|ref|NP_109893.1| hypothetical protein MPN205 [Mycoplasma pneumoniae M129] Length=438 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 278 5e-85 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 278 bits (711), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 168/399 (42%), Positives = 228/399 (57%), Gaps = 62/399 (16%) Query 34 FALRRYDLAGRALYDLDFSKL-NPQTPTRDANCQITFNPFGGFGLSGSAPQQWNEVKNKV 92 FA+RRYD GRALYD++ +K+ NP T R N + F+PF GFGL+G+AP WNE+K KV Sbjct 128 FAIRRYDNNGRALYDINLAKMENPSTVQRGLNGEPIFDPFKGFGLTGNAPTDWNEIKGKV 187 Query 93 PVEVAQDPTDPYRFAVLLVPRSVVYYEQLQRGLALPNQGSSSGSGQQNTTIGAYGLKVKN 152 PVEV Q P P + VLLVP+ + Y L + + S Q++ L+ + Sbjct 188 PVEVVQSPHSPNLYFVLLVPKVALEYHNLNNQVV---KESLEVKATQSSFNPTQRLQKDS 244 Query 153 AEADTAKSNEKLQGDESKSSNGSSSTSTTTQRGSTNSDTKVKALKIEVKKKSDSEDNGQL 212 D++K EKL E+ +S+ SS +T+T + KALK+EV++ S S+ Sbjct 245 PVKDSSKQGEKLS--ETTASSMSSGMATST---------RAKALKVEVERGSQSD----- 288 Query 213 QLEKNDLANAPIKRGEESGQSVQLKAD-DFGTAPSSSGSGGNSNPGSPTPWRPWLATEQI 271 L KND A P+K SG+ V+L+A+ +F A W+P L T+QI Sbjct 289 SLLKNDFAKKPLKHKNSSGE-VKLEAEKEFTEA-----------------WKPLLTTDQI 330 Query 272 HKDLPKWSASILILYDAPYARNRTAIDRVDHLDPKVMTANYPPSWRMPKWNHHGLWDWKA 331 ++ A+++ YDAPY+ N TA VDH+DPK M NYPPSW+ PKWNHHG+WD+ A Sbjct 331 ARE-KGMGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKTPKWNHHGIWDYNA 389 Query 332 RDVLFQTTG----------FDE--SNTSNTKQGFQKEADSDK---------SAPIALPFE 370 R++L QTTG FDE + NT GF K D+D S+PIALPFE Sbjct 390 RNLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGF-KVGDTDHKKDGFKKNSSSPIALPFE 448 Query 371 AYFANIGNLTWFGQALLVFGGNGHVTKSAHTAPLSIWLY 409 AYFANIGN+ G ++ +FGGNGH TK T PLSI ++ Sbjct 449 AYFANIGNMVAIGNSVFIFGGNGHATKMFTTNPLSIGVF 487 Lambda K H a alpha 0.311 0.128 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 51317905 Query= gi|13507945|ref|NP_109894.1| hypothetical protein MPN206 [Mycoplasma pneumoniae M129] Length=113 ***** No hits found ***** Lambda K H a alpha 0.324 0.135 0.433 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7785117 Query= gi|13507946|ref|NP_109895.1| PTS system, glucose-specific IIABC component [Mycoplasma pneumoniae M129] Length=940 Score E Sequences producing significant alignments: (Bits) Value gi|12044921|ref|NP_072731.1| PTS system, glucose-specific IIABC c... 1361 0.0 >gi|12044921|ref|NP_072731.1| PTS system, glucose-specific IIABC component (ptsG) [Mycoplasma genitalium G-37] Length=908 Score = 1361 bits (3522), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/928 (75%), Positives = 782/928 (84%), Gaps = 28/928 (3%) Query 17 LSNIRNKWKNRNRGSFRQWVGKLSNGLMIPIAVLPIAGIFLGVGDAIAGNAGDLTGLRYF 76 L IRNK+K RNRGSFRQWVGKLSNGLMIPIAVLP+AGIFLG+GDAI+ N+ + G+++F Sbjct 5 LVKIRNKFKQRNRGSFRQWVGKLSNGLMIPIAVLPLAGIFLGIGDAISSNSSGIVGVKFF 64 Query 77 GLFIKNGGDVVFANLPILFAIAIAITFSQDAGVAGFSAFVFWAAMNGFMSSLILPFDKAG 136 G FIK GG+VVFANLPILFA+AIAITFSQDAGVAGFSAFVFWA MN FMSSLI+P Sbjct 65 GEFIKQGGNVVFANLPILFAVAIAITFSQDAGVAGFSAFVFWATMNAFMSSLIIP----- 119 Query 137 KIITDTSTPIAGFKVLYNKSVPVHAIATTLGLRTLSTSVFGGIIVGALTSVLYKKFYAIR 196 D + +G+ +LY K+VP AIA+TLGL +LSTSVFGGIIVGALT+ LY KFYAIR Sbjct 120 ---VDANNTASGYNILYWKAVPQSAIASTLGLNSLSTSVFGGIIVGALTAYLYNKFYAIR 176 Query 197 LPDVIGFFSGTRFVPIICFVVAIPVALILLMIWPAVSIGLNAIGTGLGFLGGKGYGANSL 256 LPDVIGFFSGTRFVPIIC +AIPVAL+LLM+WP VSI LN IGTGLG LGG+GYGANSL Sbjct 177 LPDVIGFFSGTRFVPIICMTIAIPVALLLLMVWPGVSILLNLIGTGLGILGGRGYGANSL 236 Query 257 IFGYIERSLIPFGVHHAFYAPLWYTSAGGSLQEIVNQQVWIRPDFHLSDNYVARVIGWVD 316 IFGYIER+LIPFGVHHAFYAPLWYTSAGGSLQEI NQQVWIR +YV RVIGW D Sbjct 237 IFGYIERALIPFGVHHAFYAPLWYTSAGGSLQEIANQQVWIRAP---GSDYVTRVIGWED 293 Query 317 PNNSSMYIIPGAL-NGQNGSSTGNTMS-KDLNGALSAYMSKESTAFLTWKDLVDGLTFKG 374 N ++IP AL NG +G G T + +D ALS YMSKEST FL+WK+LVDGLT KG Sbjct 294 FNTPGKWVIPAALANGTSGMMNGATTTGQDSTSALSKYMSKESTNFLSWKELVDGLTRKG 353 Query 375 NFDKMAENGLLDGSNKIWLGLNGSGILGKKLLLSDGNVYTITFKTFANTTPIAWSKGAQA 434 NFD++A+NGLLDGSNKIW+GLN SGILGKK+LLSDG YTITFKTFANTTP WS GA A Sbjct 354 NFDELAKNGLLDGSNKIWIGLNQSGILGKKVLLSDGKDYTITFKTFANTTPTFWSHGAHA 413 Query 435 VLPLNASSTIVNNPTALAAATQSNNNTNNIKLYPVNSFRVAVESLNPAQYSQGKFPFMLF 494 +LP++ + + + N + N T N K Y V+ F VAV SLNPAQYSQGKFPFML Sbjct 414 LLPISGTPSAITNGVTV-------NGTANSKTYNVSQFTVAVPSLNPAQYSQGKFPFMLI 466 Query 495 GIPAAGVAMILAAPKDRRKEAASIVGSAAFTSFLTGITEPFEFTFLFLAPWLFYGVHAVL 554 GIPAAG+AMILAAPK RRKEA+SI+GSAAFTSFLTGITEPFEFTFLFLAPWLFYG+HAVL Sbjct 467 GIPAAGLAMILAAPKGRRKEASSIIGSAAFTSFLTGITEPFEFTFLFLAPWLFYGIHAVL 526 Query 555 AAVSFWLMNILGANVGQTFSGSFIDFILYGALPDGRRWLANSYLVPIIGLFLAAIYFPTF 614 AAVSFWLMN+L ANVGQTFSGSFIDFILYGALPDGR WLANSYLVPIIG+FLA IYFPTF Sbjct 527 AAVSFWLMNLLSANVGQTFSGSFIDFILYGALPDGRGWLANSYLVPIIGIFLALIYFPTF 586 Query 615 YFLIKHFNLATPGRGGKLITKKEYLASKAAAKAEGVSGVAENFTQTQIEAGILLQAYGGK 674 YFL FNLATPGRGGKLITKKEYLA+KAA K + + NF QTQIEAG+LL+AYGG Sbjct 587 YFLTIRFNLATPGRGGKLITKKEYLAAKAAQKTDQTTNT--NFNQTQIEAGMLLRAYGGS 644 Query 675 ENIVELGACITKLRVTVKNPELVKEEPIKELGAAGVMRTTPTFFVAVFGTRAAVYKSAMQ 734 ENI ELGACITKLRVTVKNPELV E IK+LGAAGVMRTTPTFFVAVFGTRAAVYKSAMQ Sbjct 645 ENIAELGACITKLRVTVKNPELVNETIIKDLGAAGVMRTTPTFFVAVFGTRAAVYKSAMQ 704 Query 735 DIIQGKVNWEALQKVINTDQLAVEPKETTPPKEVMPV--VQDEIVILSPVNGTLKSLNQV 792 DIIQGKVNW LQKV++ + VE E P PV VQDEIVILSPVNGTLK L QV Sbjct 705 DIIQGKVNWTELQKVLDKNDSTVEKPEIKP----TPVLKVQDEIVILSPVNGTLKPLTQV 760 Query 793 PDETFKQKLVGEGVAIVPSDGHFKAPGEAGVKTELAFPGGHAYIFDIDGIKVMLHIGIDT 852 PD+TFK +LVG+G+AI+PSDGHFKAPG+ GVKTELAFP GHA+IFD+DG+KVMLHIGIDT Sbjct 761 PDDTFKNRLVGDGIAILPSDGHFKAPGDVGVKTELAFPTGHAFIFDVDGVKVMLHIGIDT 820 Query 853 VQINAKKQPGEPLEVFDIKTKQGEYTKEKSESVVEVDLKKLSKKYNPITPFVVMKESLEN 912 V+INA K+PGE LEVFD+KTKQGEYTK KSESVVEVDLKKL +KY+PITPF+VM+ESL+N Sbjct 821 VKINADKKPGEQLEVFDVKTKQGEYTKLKSESVVEVDLKKLKRKYDPITPFIVMQESLDN 880 Query 913 FKLVPIRQRGEIKVGQPIFKLVYKKSQA 940 FKLVPIRQRGEIKVGQP+FKL+YK ++ Sbjct 881 FKLVPIRQRGEIKVGQPLFKLIYKDKKS 908 Lambda K H a alpha 0.321 0.138 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 118553673 Query= gi|13507947|ref|NP_109896.1| ribosomal protein S2 [Mycoplasma pneumoniae M129] Length=294 Score E Sequences producing significant alignments: (Bits) Value gi|12044922|ref|NP_072732.1| ribosomal protein S2 (rpS2) [Mycopla... 466 1e-169 >gi|12044922|ref|NP_072732.1| ribosomal protein S2 (rpS2) [Mycoplasma genitalium G-37] Length=284 Score = 466 bits (1199), Expect = 1e-169, Method: Compositional matrix adjust. Identities = 223/275 (81%), Positives = 253/275 (92%), Gaps = 2/275 (1%) Query 12 TAKAELVSLAKLGEMRTHVGMVKRYWNPKMGFFIEPERKHNNDHFVLELQRQSLQTAYNY 71 T K ELVSL KL EMRT++GMVKRYWNPKMGFFIEPERKHNND L+LQ Q+L+TAYN+ Sbjct 6 TEKPELVSLNKLSEMRTNIGMVKRYWNPKMGFFIEPERKHNNDLLKLDLQYQALKTAYNF 65 Query 72 VKEVAQNNGQILFVGTKNDYVKKLVNNIAKRVDVAFITQRWLGGTLTNFKTLSISINKLN 131 +K+V +N+GQILFVGTKNDYVKKLV +IAKRV+VA+ITQRWLGGTLTNFKTLSISINKLN Sbjct 66 IKDVVKNHGQILFVGTKNDYVKKLVIDIAKRVNVAYITQRWLGGTLTNFKTLSISINKLN 125 Query 132 KLVEKQAENAADLTKKENLMLSREIERLEKFFGGVKSLKRLPNLLIVDDPVYEKNAVAEA 191 KLVE+Q +NA DLTKKENL+LSREIERLEKFFGGVK+LKRLPNL+++DDPVYEKNAV EA Sbjct 126 KLVEQQKQNANDLTKKENLLLSREIERLEKFFGGVKNLKRLPNLIVIDDPVYEKNAVLEA 185 Query 192 NILRIPVVALCNTNTNPELVDFIIPANNHQPQSTCLLMNLLADAVAEAKAMPTMFAYKPD 251 N L+IPVVALCNTNTNPELVDFIIPANNHQPQSTCLLMNLLADA+AEAK T++AYKPD Sbjct 186 NSLKIPVVALCNTNTNPELVDFIIPANNHQPQSTCLLMNLLADAIAEAKGFETLYAYKPD 245 Query 252 EEIQIEIPQKQEAPRQVVNRANSKQITSQRLNITR 286 E+IQIEIP KQE RQV+NR+N++ IT+QRLNI R Sbjct 246 EQIQIEIPPKQE--RQVINRSNTRNITNQRLNINR 278 Lambda K H a alpha 0.316 0.131 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31818976 Query= gi|13507948|ref|NP_109897.1| cation-transporting P-type ATPase [Mycoplasma pneumoniae M129] Length=872 Score E Sequences producing significant alignments: (Bits) Value gi|12044923|ref|NP_072733.1| cation-transporting P-type ATPase, p... 1317 0.0 >gi|12044923|ref|NP_072733.1| cation-transporting P-type ATPase, putative [Mycoplasma genitalium G-37] Length=874 Score = 1317 bits (3408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 662/874 (76%), Positives = 765/874 (88%), Gaps = 2/874 (0%) Query 1 MNKWTGLSAAAVLESRAQHGANLIPTKKLTPFWLLFLEQFKSLVVILLLVATILSLVVAI 60 MN WTGLS A ++SR +HGAN +P KK TPFWLLFL+QFKSLVVILLL+A++LS VVAI Sbjct 1 MNSWTGLSEQAAIKSRQEHGANFLPEKKATPFWLLFLQQFKSLVVILLLLASLLSFVVAI 60 Query 61 ISGVNANWLFDHNLVIEWTQPFVILITVLANSLIGSIQEFKAQKSAHTLKSLTQPFTRVF 120 +SG+ +NW F+H+L+IEW QPF+IL+TV ANSLIGSIQEFKAQKSA LKSLT+ FTRVF Sbjct 61 VSGLRSNWNFNHDLIIEWVQPFIILLTVFANSLIGSIQEFKAQKSASALKSLTKSFTRVF 120 Query 121 REEGLVSLPVGEVVVGDIIFLEAGDIIPADGKVLQANHLRCMESFLTGESVPVDKSVVNT 180 R L+S+ V EVVVGDIIF++AGDIIPADGK+LQ N+LRC+ESFLTGES PVDK++ + Sbjct 121 RNGELISINVSEVVVGDIIFVDAGDIIPADGKLLQVNNLRCLESFLTGESTPVDKTIDSN 180 Query 181 GGKGLLEQTNLLFSGAQVVFGSGVFEVTAVGLNTQVGQIVKTVDSSATKLSPLQQKLEKV 240 +LEQTNL+FSGAQVV+GSGVF+V AVG+ TQVG+I KTVD S TKLSPLQQKLEK+ Sbjct 181 EKATILEQTNLVFSGAQVVYGSGVFQVEAVGIKTQVGKIAKTVDDSVTKLSPLQQKLEKI 240 Query 241 GKWFSWFGLGLFVVVFLVQLGLLGFHNFSANWSIALIGAIALVVAIIPEGLVTFINVIFA 300 GKWFSWFGLGLF VVFLVQ LLGF NF+ NWSIALIGAIALVVAIIPEGLVTFINVIFA Sbjct 241 GKWFSWFGLGLFAVVFLVQTALLGFDNFTNNWSIALIGAIALVVAIIPEGLVTFINVIFA 300 Query 301 LSVQKLTKQKAIIKYLAAIETLGGVQIICTDKTGTLTQNKMKVVDYFCFSNTTQTDLARA 360 LSVQKLTKQKAIIKYL+ IETLG VQIICTDKTGTLTQN+MKVVD+FCF++TTQTDLARA Sbjct 301 LSVQKLTKQKAIIKYLSVIETLGSVQIICTDKTGTLTQNQMKVVDHFCFNSTTQTDLARA 360 Query 361 LCLCNNATVNTNGDSTGDPTEIALLQWLDRDGLELNHYTRVYEKAFDSNRKLMSVVVQKD 420 LCLCNNA+++ + + TGDPTEIALL+W DR L+L Y RVYEKAFDS RKLM+VVVQKD Sbjct 361 LCLCNNASISKDANKTGDPTEIALLEWKDRSQLDLKTYYRVYEKAFDSIRKLMTVVVQKD 420 Query 421 NRFIVIVKGAHDVLLPLCKGLDS--NQIKPLIDERASNGLRNLAVGLKVLYCFDPENTQT 478 NRFIVIVKGA DVLLPLC + + I+ L+D+ A GLR LAV LKVLY FD + + Sbjct 421 NRFIVIVKGAPDVLLPLCNNVQNEVKNIENLLDQSAGQGLRTLAVALKVLYKFDQNDQKQ 480 Query 479 VNELESELDFLGSVSLQDPPRIESKAAIMACHQANITPIMITGDHLKTATAIAKELGILT 538 ++ELE+ L+FLG VSLQDPPR ESK AI+AC +ANITPIMITGDHLKTAT IAKELGILT Sbjct 481 IDELENNLEFLGFVSLQDPPRKESKEAILACKKANITPIMITGDHLKTATVIAKELGILT 540 Query 539 DERQAILGVDLDPAKIMEYRVFARVTPQQKLEIVNAWKQAGYTVAVTGDGVNDAPALVTS 598 + QA+LG +LD KI++YRVFARVTPQQKL IV+AWK+AG+TV+VTGDGVNDAPAL+ S Sbjct 541 LDNQAVLGSELDEKKILDYRVFARVTPQQKLAIVSAWKEAGFTVSVTGDGVNDAPALIKS 600 Query 599 DVGCCMGQTGVDIAKDAADVIISDDNFATIVNGIEQGRKTFLTCKRVLFNLFLTSIAGTI 658 DVGCCMG TGVDIAKDA+D+IISDDNFATIVNGIE+GRKTFLTCKRVL NLFLTSIAGT+ Sbjct 601 DVGCCMGITGVDIAKDASDLIISDDNFATIVNGIEEGRKTFLTCKRVLLNLFLTSIAGTV 660 Query 659 VVLLGLFVLGEVFREQLSKANHNFQVFTPTQLLIINLFVHGFPAVALAIQPVQEKLMLKP 718 VVLLGLF+LG+VF+ L + H+FQVF+PTQLLIINLFVHGFPAVALA+QPV+EKLM+ Sbjct 661 VVLLGLFILGQVFKTNLLQQGHDFQVFSPTQLLIINLFVHGFPAVALAVQPVKEKLMVGS 720 Query 719 FSTKNLFYNRGGFDLIWQSLLLSFLTLLFYSLGMVYAINDPELGKSGDLINRAGATCGFM 778 FSTKNLFYNR GFDLIWQSL LSFLTLLFYSLG++YAIN+ +L SGDLINRAG+TCGF Sbjct 721 FSTKNLFYNRQGFDLIWQSLFLSFLTLLFYSLGIIYAINNRDLQTSGDLINRAGSTCGFF 780 Query 779 VLGGSAALNSLNLMVDRPLVATNPKHYGIVWLGALSSIFVFLLIIFINPLGLVFSTLKDL 838 +LG SAALNSLNLMVD+PL+ TNP + +VW+G+L+SI VFLLIIFINPLGLVF+ L+DL Sbjct 781 ILGASAALNSLNLMVDKPLLMTNPWFFKLVWIGSLASILVFLLIIFINPLGLVFNVLQDL 840 Query 839 TAHPVLIGYSFGGVLLYMTINEVVKLIRLSYGSV 872 T HPVLI YSFGGV+LYM +NEVVKLIRL YG++ Sbjct 841 TNHPVLISYSFGGVILYMGMNEVVKLIRLGYGNI 874 Lambda K H a alpha 0.323 0.139 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 109712538 Query= gi|13507949|ref|NP_109898.1| preprotein translocase SecA [Mycoplasma pneumoniae M129] Length=808 Score E Sequences producing significant alignments: (Bits) Value gi|12044924|ref|NP_072734.1| preprotein translocase (secA) [Mycop... 1452 0.0 >gi|12044924|ref|NP_072734.1| preprotein translocase (secA) [Mycoplasma genitalium G-37] Length=806 Score = 1452 bits (3760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 696/806 (86%), Positives = 751/806 (93%), Gaps = 1/806 (0%) Query 1 MGLFNFLKLVSPRHRIYHKASKIANEVEGHKNYYRNLTDVQLLEESNKLVDLVTKQNYTI 60 M +FNFLKL+SP++RI KA++IA+EVE +KNYYRNLTD QL EESNKLVDLVTKQNYTI Sbjct 1 MAIFNFLKLISPKNRILSKANRIASEVESYKNYYRNLTDQQLFEESNKLVDLVTKQNYTI 60 Query 61 LDVAVAALALIREVVYRETGEFAYRVQIIGAYIVLIGDFAEMMTGEGKTLTIVLAAYVSA 120 LDV VAALALIREVVYRETGEFAYRVQIIGA+IVL GDFAEMMTGEGKTLTIVLAAYVSA Sbjct 61 LDVCVAALALIREVVYRETGEFAYRVQIIGAFIVLSGDFAEMMTGEGKTLTIVLAAYVSA 120 Query 121 LEKRGVHVVTVNEYLAQRDATNATKILKRVGMTVGCNFANLAPHLKQAAFACDVTYTTNS 180 LEKRGVHVVTVNEYLAQRDA NA KILKRVGM+VGCNFANL+P LKQAAF CDVTYTTNS Sbjct 121 LEKRGVHVVTVNEYLAQRDANNAMKILKRVGMSVGCNFANLSPQLKQAAFNCDVTYTTNS 180 Query 181 ELGFDYLRDNMVHRFEDKKIRELHFAIVDEGDSVLIDEARTPLIISGPAKNEFAAYVAVD 240 ELGFDYLRDNMVH ++DKKIRELHFAIVDEGDSVLIDEARTPLIISGP+KNEF YVAVD Sbjct 181 ELGFDYLRDNMVHSYQDKKIRELHFAIVDEGDSVLIDEARTPLIISGPSKNEFGLYVAVD 240 Query 241 RFVKKLKEDEYKIDPESRAPALTELGIKHAEKNFKTDNLFALENSDLFHKIINALTAVKV 300 RFVK L E E+KIDPESRA +LTELGIK AE+ FK +NLFALENSDLFHKI+N LTAVKV Sbjct 241 RFVKSLTEQEFKIDPESRAASLTELGIKKAEQTFKKENLFALENSDLFHKIMNGLTAVKV 300 Query 301 FEQGKEYIVRDGKVLIVDHFTGRILEGRSYSNGLHQAVQAKEMVEIEPENVIVATITYQS 360 FEQGKEYIVRDGKVLIVDHFTGRILEGRSYSNGL QAVQAKE VEIEPENVIVATITYQS Sbjct 301 FEQGKEYIVRDGKVLIVDHFTGRILEGRSYSNGLQQAVQAKEYVEIEPENVIVATITYQS 360 Query 361 FFRLYNRLSAVSGTAFTESEEFLKIYNMVVVPVPTNRPNIRKDRADSVFGTPNIKWLAVV 420 FFRLYNRL+AVSGTA TESEEFLKIYNMVVVPVPTNRPNIRKDR+DSVFGTP IKW+AVV Sbjct 361 FFRLYNRLAAVSGTALTESEEFLKIYNMVVVPVPTNRPNIRKDRSDSVFGTPQIKWMAVV 420 Query 421 KEVKRIHETGRPILIGTANIDDSELLHNYLQEANIPHEVLNAKNHSREAEIVAKAGQKGA 480 KE+K+IHET RPILIGTANIDDSELLHN L EANIPHEVLNAKNHSREAEIV KAGQK A Sbjct 421 KEIKKIHETSRPILIGTANIDDSELLHNLLLEANIPHEVLNAKNHSREAEIVTKAGQKNA 480 Query 481 VTISTNMAGRGTDIRLGEGVAEMGGLYVLGTERNESRRIDNQLRGRAGRQGDRGETKFFI 540 VTISTNMAGRGTDIRLGEGVAEMGGLYVLGTERNESRRIDNQLRGRA RQGD+GETKFFI Sbjct 481 VTISTNMAGRGTDIRLGEGVAEMGGLYVLGTERNESRRIDNQLRGRAARQGDKGETKFFI 540 Query 541 SLGDALFKRFAHDRIERAITKLGNDTFDSSFFSKMLSRTQKRVEAINFDTRKNLIDYDHV 600 SLGD+LFKRFAHD+IERAI+KLGN+TFDS+FFSKMLSRTQKRVEAINFDTRKNLIDYDHV Sbjct 541 SLGDSLFKRFAHDKIERAISKLGNETFDSAFFSKMLSRTQKRVEAINFDTRKNLIDYDHV 600 Query 601 LASQRELIYKQRDKFLLATDLSDMIDKMLEKFVEQFCDQYRNPKNQNLVNHIALSEALNL 660 LASQRELIYKQRDKFLLA DLS+MIDKMLEKFV+QFCDQYRN KNQNL+NHIAL+EALNL Sbjct 601 LASQRELIYKQRDKFLLANDLSEMIDKMLEKFVQQFCDQYRNQKNQNLINHIALAEALNL 660 Query 661 ELNMHGVISPKLFENMTFDATVHKTHSLIGEKITNKVKVLTPPIALIRFREIMITAMDKH 720 E+NM I+PK+FENMTFD V KT +L+ +KI++KV VLT PIAL RFR+I+IT+MDKH Sbjct 661 EMNMQNTINPKVFENMTFDVAVDKTRNLVAKKISDKVNVLTKPIALNRFRDIIITSMDKH 720 Query 721 WIEHLDNVFKLREGVTLRSMEQTSPLNVYIRETDILFQTMLQKIARDVIIQIANLATPEE 780 W EHLD+VFKLREGV LRSME TSPLNVYI+ETDILF+TMLQKIA+DVI+QIANL TP+E Sbjct 721 WTEHLDSVFKLREGVVLRSMEHTSPLNVYIKETDILFKTMLQKIAQDVIVQIANLTTPDE 780 Query 781 FDEELMKANALKKLQALREAHEKSNE 806 FD LM+ANALKKL A++ A EKSN+ Sbjct 781 FDHSLMQANALKKLAAIK-ADEKSNQ 805 Lambda K H a alpha 0.320 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 100869210 Query= gi|13507950|ref|NP_109899.1| Helicase subunit of the DNA excision repair complex [Mycoplasma pneumoniae M129] Length=657 Score E Sequences producing significant alignments: (Bits) Value gi|12044925|ref|NP_072735.1| excinuclease ABC subunit B (uvrB) [M... 1064 0.0 >gi|12044925|ref|NP_072735.1| excinuclease ABC subunit B (uvrB) [Mycoplasma genitalium G-37] Length=656 Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 505/656 (77%), Positives = 578/656 (88%), Gaps = 1/656 (0%) Query 1 MKSPTKDSKLFHLKSNFAPTGDQPAAIAKLAEFQTNEQVLLGATGTGKTFTIANVIQKVQ 60 MK+ TK + LF L +N+ PTGDQP AI KL+EF+T +QVLLGATGTGKTFTIANVIQ Q Sbjct 1 MKNQTKSNSLFQLSTNYIPTGDQPEAIKKLSEFKTKQQVLLGATGTGKTFTIANVIQNSQ 60 Query 61 LPTVVIAHNKTLAGQLYQELKELFPNNAVEYFISYFDFYQPEAYLPAKGVYIEKSATVNE 120 LPTVVIAHNKTLAGQL+ ELK+LFP NAVEYFISYFDFYQPEAYLP+KG+YIEKSATVNE Sbjct 61 LPTVVIAHNKTLAGQLFNELKQLFPKNAVEYFISYFDFYQPEAYLPSKGIYIEKSATVNE 120 Query 121 EIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPADFAQYSLWLVVGKEYGLSELKTQLI 180 IKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSP+DF +Y LW VVGK+Y L +K +L+ Sbjct 121 AIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPSDFVKYCLWFVVGKDYDLKTIKDRLV 180 Query 181 HLNYVVNKQQLTPGKFRFQGDVVEVFPGYAQDYVLRLSFFDQQLEQIARIDPLTNKVLET 240 LNYVVNKQQLTPGKFRFQGDV+EVFPGY+ +V+R+SFFD ++EQI +IDPLTNK+L Sbjct 181 SLNYVVNKQQLTPGKFRFQGDVLEVFPGYSDAFVIRISFFDTKVEQICQIDPLTNKILNQ 240 Query 241 LNSFKLGPADEYIVNQNDLGVALDTIKAELKDRLKYFERLNFPERAQRLQTITEHDLADL 300 L K+GPADEY+VNQ+DL +A+ IK EL++R+ YF + N ERAQRL TIT HDL DL Sbjct 241 LFEIKIGPADEYVVNQSDLDIAIKNIKQELQERVNYFNKQNLVERAQRLATITNHDLNDL 300 Query 301 KAWGVCSGVENYARHLEHRPPHSKPYNIFDYFTKGEWLLVVDESHQTLPQIKGMYNTDIS 360 KAWG CSGVENYARHLE R +S PY+IFDYF KG+WLLV+DESHQTLPQ+ GMYNTD+S Sbjct 301 KAWGFCSGVENYARHLELRMANSTPYSIFDYF-KGDWLLVIDESHQTLPQLNGMYNTDLS 359 Query 361 RKQSLIEYGFRLPSALDNRPLSYEEFRQGINKVIYVSATPREEEIQLSHNNVVEQLVRPT 420 RKQSLI+YGFRLPSALDNRPLS+ E +Q + KVIYVSATPR++EI LS NNV+EQLVRPT Sbjct 360 RKQSLIDYGFRLPSALDNRPLSFAELQQKMQKVIYVSATPRDKEISLSQNNVIEQLVRPT 419 Query 421 YLLDPEVIVKPKDNQVEDLVSEIINQRKHNGRTFVTVLTIKMAENLTDFLKERNIKVAYI 480 YL+DP ++VKPKDNQVEDL+ EIINQR++N RTFVTVLTIKMAENLT++LKER IKVAYI Sbjct 420 YLVDPIIVVKPKDNQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERKIKVAYI 479 Query 481 HKDIKALERLILLTDLRKGEYECLVGINLLREGLDVPEVSLVAIFDADIPGLPRDERSLI 540 HKDIKALERL+L+ DLR+GEYECLVGINLLREGLDVPEV+LV IFDADIPGLPRDERSLI Sbjct 480 HKDIKALERLLLINDLRRGEYECLVGINLLREGLDVPEVALVCIFDADIPGLPRDERSLI 539 Query 541 QIIGRAARNVHGRVIMYANTISEQMDKAIKETQRRRTIQMAYNEQHHKTPMTVQKPITLN 600 QIIGRAARN HGRV+MYAN ++EQM KAI ET+RRRT+QM YN+ H+KTP TV KP+T Sbjct 540 QIIGRAARNEHGRVVMYANHVTEQMQKAIDETKRRRTVQMEYNKLHNKTPKTVVKPLTFV 599 Query 601 QPIKLKTKSSEQQKAALIKQLTKEMKQAAANQNYELAIEIRDSIFELEKQFRGKIK 656 QPIKLK KS+ ++ AALIKQLTKEMK+AAANQNYELAIEIRDSIFELEK+ KIK Sbjct 600 QPIKLKAKSNAEKNAALIKQLTKEMKKAAANQNYELAIEIRDSIFELEKEIGSKIK 655 Lambda K H a alpha 0.318 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 80843245 Query= gi|13507951|ref|NP_109900.1| hypothetical protein MPN212 [Mycoplasma pneumoniae M129] Length=135 Score E Sequences producing significant alignments: (Bits) Value gi|12044926|ref|NP_072736.1| hypothetical protein MG074 [Mycoplas... 77.0 7e-21 >gi|12044926|ref|NP_072736.1| hypothetical protein MG074 [Mycoplasma genitalium G-37] Length=137 Score = 77.0 bits (188), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 52/135 (39%), Positives = 84/135 (62%), Gaps = 0/135 (0%) Query 1 MRKLIKLNVIVFVLLYLGELFASLSFKLISCLKTRNQYSLNGYYALFVFVNIIQKMANSF 60 MR+ IKL+++VFVLL+L EL S +L++ +K R + S+ Y A +F+ Q +N+F Sbjct 1 MRQFIKLSLLVFVLLFLSELICRFSLRLVNSIKARYKSSVFSYTACLLFLKSFQNFSNAF 60 Query 61 QKLASSVVLFETEINEFLVLFTDTKNKREESEPVRQVSTTQEYHQVTLDQQHYFNHKLSD 120 QKLA+ V FE ++NE L +F +++ E + + Q ++++ KLSD Sbjct 61 QKLANWVFWFENDVNELLSIFYFNFDQKSEKVDYNFFNGYKVTAQKVVEKEQLLTCKLSD 120 Query 121 YFRLFKDKTFFFEII 135 Y+RLF+DKTF+FE+I Sbjct 121 YYRLFRDKTFWFELI 135 Lambda K H a alpha 0.328 0.140 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10652233 Query= gi|13507952|ref|NP_109901.1| hypothetical protein MPN213 [Mycoplasma pneumoniae M129] Length=1030 Score E Sequences producing significant alignments: (Bits) Value gi|12044927|ref|NP_072737.1| 116 kDa surface antigen [Mycoplasma ... 991 0.0 >gi|12044927|ref|NP_072737.1| 116 kDa surface antigen [Mycoplasma genitalium G-37] Length=1024 Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust. Identities = 530/1043 (51%), Positives = 716/1043 (69%), Gaps = 32/1043 (3%) Query 1 MKLSAI--ISLSVAGTVGTTAVVVPTTITLVNKTHQVEHESEQSDFQDIRFGLNSVKLPK 58 MKLS I I LS++G GTTA+ +PTT+ L+ Q E +Q+ +DIRFGLN+V++P Sbjct 1 MKLSTITTICLSISGAFGTTAIALPTTVALLKNHQQQNTEKQQNPIKDIRFGLNNVQVPN 60 Query 59 AQPAAATRITVENGTDKLVNYKSSPQQLFLAKNALKDKLQGEFDKFLSDAKAFPALTADL 118 P T + V N +V+YK +PQ+ FLAK+AL +KLQ EFDKFL AL ADL Sbjct 61 TIPLHQTVVEVTNN-KAIVDYKDAPQKFFLAKSALNNKLQVEFDKFLLRTGVINALNADL 119 Query 119 QEWVDQQLFNPNQSFFDLSAPRSNFTLSSDKKASLDFIFRFTNFTESVQLLKLPEGVSVV 178 +EW+DQ LF PNQSFFDLSA + N TLS+ + SLD F FTNF++ Q LKLP SVV Sbjct 120 KEWIDQTLFIPNQSFFDLSANKLNLTLSNQSEVSLDLEFIFTNFSDKNQPLKLPFDGSVV 179 Query 179 VDSKQSFDYYVNASAQKLLVLPLSLPDYTLGLNYMFDHITLNGKVVNKFSFNPFKTNLNL 238 V++ +S+ Y V A+ QKL VL S D+++G++Y ++LNGK N FSFNPFK+N+N Sbjct 180 VNANESYTYSVKATLQKLKVLTYSRADHSVGISYAIPTVSLNGKTQNDFSFNPFKSNINF 239 Query 239 AFSNVYNGVDVFEAQKNLVGKGKYLNTHVKAEDVKKDVNANIKNQFDIAKIIAELMGKAL 298 AF NVYN ++ FEAQ+ LVG+GK+LN V A+DVK D+N +I+ QF++AKI A L+GKA Sbjct 240 AFKNVYNALNPFEAQQYLVGQGKFLNQKVNADDVKNDINNHIETQFNVAKITATLLGKAF 299 Query 299 KEFGNQQEGQPLSFLKVMDKVKEDFEKLFNLVRPGLGKFVKDLIQSSSQAENKITVYKLI 358 K+FG + GQPLS LKV+ + +F++LFN VRPGLG FV DLIQSSSQ+ NK TVY+L+ Sbjct 300 KQFGEHKNGQPLSLLKVLSGLNNEFKQLFNYVRPGLGDFVSDLIQSSSQSSNKKTVYQLL 359 Query 359 FDNKKTILNLLKELSIPELNSSLGLVDVLFDGITDSDGLYERLQSFKDLIVPAVKTNEKT 418 F+NK TI++LL++L+I ELNS L +VD+LF+GI ++ LY+R+QSFKDLIVPA+K +++ Sbjct 360 FENKTTIIHLLQDLNISELNSVLPVVDILFEGINSAESLYQRIQSFKDLIVPALKADKQL 419 Query 419 AALSPLIEELLTQKDTYVFDLIQKHKGILTNLLKNFLADFQKSTPFMADQVAIFTELFDN 478 +L +I +L +TYVFDL+ ++K IL NLL +FL + + PF+ +Q I LF N Sbjct 420 KSLEAIILAVLDNPNTYVFDLVYQNKSILFNLLSDFLKNTANTLPFLQEQFDIVNHLFAN 479 Query 479 EGAFDLFGEADFVDKIAELFLTKRTVKNGEKIETK-----DSLLVTSLKSLLGEKVAALG 533 E FDLF ADFV+KIA+LFL K+ V+ TK DS+LV +LK L+G++++++ Sbjct 480 EAIFDLFSNADFVEKIADLFLAKQKVQEVNNDGTKSTKIVDSILVATLKGLVGDQLSSIT 539 Query 534 DLLDSYIFKNELLNRSVEVAKAEAKDTKGATDYKKEQAKALKKLFKHIGENTLSKTNLDK 593 +LL+ YIF+NE LNR+ D+ + KK+Q +LK LF IG+ LS+TN++K Sbjct 540 ELLNIYIFENEFLNRN---------DSNSSV--KKQQTDSLKNLFSVIGD-ILSETNVNK 587 Query 594 ITLKEVKNTENVELEETETTLKVKKLDVEYKVELGNFEIKNGLIKAMLEFLPDTKDLETT 653 ITL VKN E + L ET +TLK+K L+V+YKV + FE+KN IK +L F PDTKD+ T Sbjct 588 ITLHAVKNNELLSLVETASTLKIKHLNVQYKVLVDKFELKNSFIKELLNFFPDTKDITPT 647 Query 654 LDKLLFKGESYKAMKDKYIKEGFPGYGWAKGVVPGAFESIENTFKSAIDKTKSIRDLFGD 713 + K+LF+ E+YK ++ KY EGFPGY WAK +VPG F S ENTF SAIDKTKSIRDLF D Sbjct 648 IKKVLFESENYKTLRKKYENEGFPGYHWAKFIVPGTFNSAENTFYSAIDKTKSIRDLFAD 707 Query 714 MLFGNDLSSVKETDSFITLGGSFDIKYGGENLNVLPAYYSLINSEIGYQIIGVDTTIDAT 773 MLFG L SV ++DSFI + GSF +KY G+NLN+LP Y+SLI +GYQI+ V+ IDA Sbjct 708 MLFGKSLESVNDSDSFIKINGSFTLKYHGDNLNLLPNYHSLITKNVGYQIVNVNFHIDAR 767 Query 774 KVKVELKNKEYKGKSPAINGQVKLSQSFFNVWTNMFDSITKQIFQKKYEFKDNIQVFARN 833 + EL+N + P I V+LS+S F VW +F++ QI +K+Y FKDN++ F Sbjct 768 LLTAELQNTVFSNPKPVIKSPVELSKSLFEVWKTIFENSVNQILKKEYTFKDNLKFFPFK 827 Query 834 EDNTSRLELDISDPEQRVIPFAFVDGFGIQLKA--VDKNITKEAGNTEPKSPVIQLYEAL 891 D +SRLE D+S P+QRVIPFAFVDG+ QLK + TK+ N+ SPV++LY+A+ Sbjct 828 ADGSSRLEFDLSKPDQRVIPFAFVDGYQFQLKKELIPNKETKKEANS---SPVLKLYDAV 884 Query 892 NKEKDQKQQSKQSPKQLDT----KTQLGYLLKLGDNWSKDDYKSLIDDTIINNNYLEASF 947 K D++ + L K+QL +L LGD ++ IDDT++N + SF Sbjct 885 -KRNDRQYRPNHHHDDLRNYPSLKSQLELILNLGDKLKANN--DFIDDTVVNALQYKTSF 941 Query 948 NSKITVDRLGIPIDLWLFKIWPKFNLEIPMQGSLQLYSSSVIFPYGIYDTSVQDAAKIVK 1007 S + V+ LGIPI+L+ F +W KFNLEIP+ GSL L S +V+FPY +YDTS + +IV Sbjct 942 KSTLKVNSLGIPINLFFFTLWLKFNLEIPIDGSLTLTSVNVVFPYSLYDTSSNEFTRIVD 1001 Query 1008 RLNFTDMGFKLNDPKPNFWFVGF 1030 RLNFTD F L D PNFWFVGF Sbjct 1002 RLNFTDTNFYLKDAFPNFWFVGF 1024 Lambda K H a alpha 0.316 0.134 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 130348550 Query= gi|13507953|ref|NP_109902.1| hypothetical protein MPN214 [Mycoplasma pneumoniae M129] Length=138 Score E Sequences producing significant alignments: (Bits) Value gi|12044928|ref|NP_072738.1| hypothetical protein MG076 [Mycoplas... 179 5e-61 >gi|12044928|ref|NP_072738.1| hypothetical protein MG076 [Mycoplasma genitalium G-37] Length=138 Score = 179 bits (454), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 83/138 (60%), Positives = 112/138 (81%), Gaps = 0/138 (0%) Query 1 MLGTQTTNSKPREYGGLIVSTIYIVLFFAILNLTVFFNKTNNINLILKNSCVVSFVVVWL 60 M+ Q NS EYGG++VS Y++LFF ILN+T++F+K+ N +++KNS + SF V L Sbjct 1 MVLNQNKNSNKAEYGGIVVSVFYLILFFLILNITIYFHKSTNFTVVVKNSVLTSFFVNLL 60 Query 61 LVCLQGIVRLKTCDGARYEISKFNQYLKLGSIYAKPNISFDEYKAKSSSYRKQTRGFWWM 120 LVCLQGI RLKTCDG RYEISKFN+YLKLGS+YAKP +SF++Y+ +S++YR++T GFWWM Sbjct 61 LVCLQGIFRLKTCDGMRYEISKFNRYLKLGSVYAKPLVSFNQYQDQSATYRQKTSGFWWM 120 Query 121 NFSLYLLGSLISIVVSLL 138 N +YL+GSL+S +VSLL Sbjct 121 NLIVYLVGSLVSGLVSLL 138 Lambda K H a alpha 0.326 0.140 0.422 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11089996 Query= gi|13507954|ref|NP_109903.1| oligopeptide transport system permease protein OppB [Mycoplasma pneumoniae M129] Length=389 Score E Sequences producing significant alignments: (Bits) Value gi|12044929|ref|NP_072739.1| oligopeptide ABC transporter, permea... 606 0.0 >gi|12044929|ref|NP_072739.1| oligopeptide ABC transporter, permease protein (oppB) [Mycoplasma genitalium G-37] Length=407 Score = 606 bits (1563), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/392 (77%), Positives = 333/392 (85%), Gaps = 3/392 (1%) Query 1 MFIVMTIVFFLVNSTGQTPLSATSSKDLEAVKTQLDAFGFNDPLIVRYGRYWQTLFS--- 57 MFIVM+IVFFLVN+TG PLSATS++D+ AV+ QL FGFNDP+IVRY RYW LFS Sbjct 16 MFIVMSIVFFLVNATGNVPLSATSARDIAAVQAQLQEFGFNDPIIVRYFRYWAKLFSFQA 75 Query 58 GSLGTYYSSPNQTIDQIVFGRVPNTLYVVLISFFIGSLLGIIFGMISGLFRGKLIDAVIN 117 +LG YY++PNQTI +IVF RVPNTLYVVLISF IGSLLGI GM+SGL RGK +DA IN Sbjct 76 DALGIYYANPNQTIGEIVFARVPNTLYVVLISFLIGSLLGIFLGMVSGLNRGKFLDAAIN 135 Query 118 VLVVLFVSIPSFVVGLGLLKAAGLFRLPPRFINFDDANFNFGNFLLASIIPILSLVFYTS 177 VLVVLFVSIPSFVVGLGLLK AG LPPRFINFDDA F+F FLLASIIPILSLVFY+S Sbjct 136 VLVVLFVSIPSFVVGLGLLKLAGFLNLPPRFINFDDAFFSFDRFLLASIIPILSLVFYSS 195 Query 178 AAFTYRVRNEVVEVMNQDYIKTARSKGLSTFAVALYHIFRNSIIPSVPLFVFGISGAFSG 237 AAFTYR+RNEVVEVMNQDYIKTA+SKGL FAVA YHIFRNSIIPS+PLFVFGISGAFSG Sbjct 196 AAFTYRIRNEVVEVMNQDYIKTAKSKGLGMFAVARYHIFRNSIIPSIPLFVFGISGAFSG 255 Query 238 GFIIESLFGVQGVSRILIDSVQSNETNLVMFNIMFIQGIPLLASVFIELIYVLVDPRIRI 297 GFIIESLFGVQGVSRILIDSVQ NETN+VMFNI+FIQGIPLLASVFIE IYVLVDPRIRI Sbjct 256 GFIIESLFGVQGVSRILIDSVQVNETNMVMFNILFIQGIPLLASVFIEFIYVLVDPRIRI 315 Query 298 ASAGGVSLWTKLKFVYLRQAWLRKWRRINHTNSHNVLFNSPQHRQLLELKAIDYKHNTIS 357 A++ VSL TKLKF+ R WL KW +IN N+ N++FNSP H QLLEL AIDYK T+ Sbjct 316 ANSSNVSLLTKLKFLSSRHQWLMKWNKINSDNAQNIVFNSPLHHQLLELNAIDYKTKTVQ 375 Query 358 LTEQQKTTLKIEPTANFVLLGTKCLKIITIHG 389 LT +QKT L I TANF+LLG KCLK+ TIHG Sbjct 376 LTTEQKTALNISATANFILLGNKCLKLKTIHG 407 Lambda K H a alpha 0.328 0.143 0.420 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44722677 Query= gi|13507955|ref|NP_109904.1| oligopeptide transport system permease protein AmiD [Mycoplasma pneumoniae M129] Length=376 Score E Sequences producing significant alignments: (Bits) Value gi|12044930|ref|NP_072740.1| oligopeptide ABC transporter, permea... 652 0.0 >gi|12044930|ref|NP_072740.1| oligopeptide ABC transporter, permease protein (oppC) [Mycoplasma genitalium G-37] Length=376 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/376 (84%), Positives = 355/376 (94%), Gaps = 0/376 (0%) Query 1 MDKHQKFDQSLFQRVDINVLKRSDQLIGKPTTNFVEIMKRLFQNKWAILFFLLIVLIILL 60 MD+++ FD +LF+RVDIN+LKR+DQLIGKPTTN +EI+KRLFQNKWAILFFLLIV+I+LL Sbjct 1 MDRNKSFDPNLFKRVDINLLKRNDQLIGKPTTNSIEIIKRLFQNKWAILFFLLIVVIVLL 60 Query 61 AIIVPLASPYSAVTPVSNNALAQNLPPRYLWNGAGDIQVEKITARSIAEVAQSSGVLVGK 120 AIIVPL SP+SAVTPVS NALAQNLPPRYLW+ GDI V KITARSIAE++Q+SGVLVG Sbjct 61 AIIVPLTSPFSAVTPVSTNALAQNLPPRYLWHKPGDILVHKITARSIAEISQASGVLVGT 120 Query 121 LPEASSNPLATNVKYNIAPYQLAELKNYYPLLGTNGLGVDIWTLLWASMAKSLWIAIVVA 180 LP A+SNPLATNV+Y+IAP+QL EL+NY+PLLGTNGLG+DIWTLLWAS+AKSLWIA+VVA Sbjct 121 LPSANSNPLATNVQYDIAPFQLQELRNYFPLLGTNGLGIDIWTLLWASVAKSLWIAVVVA 180 Query 181 LVSMVFGTIYGAIAGSFVGRAADNIMSRIIEIIDLVPSILWIIVLGATFRFGGVKQFDDS 240 +++MVFGTIYGA+AGSFVG ADNIMSRIIEIID+VPSILWIIVLGATFRFGGVKQFDDS Sbjct 181 IIAMVFGTIYGAVAGSFVGHMADNIMSRIIEIIDIVPSILWIIVLGATFRFGGVKQFDDS 240 Query 241 VVIFTLIFVFWTWPAATTRIYILKNKDTEYIQAARTLGAKQIRIIFVHMLPVVTGRLAVV 300 VVIFTLIFVFWTWPA TTRIYILKNKDTEYIQAA+TLGA QIRIIFVHMLPVV GRLAVV Sbjct 241 VVIFTLIFVFWTWPATTTRIYILKNKDTEYIQAAKTLGAHQIRIIFVHMLPVVFGRLAVV 300 Query 301 FVSLIPAVIGYEASLVFLGLKPATEVGLGALLNQVTSSGNIALITSSIVSFAILTVSTRV 360 FVSLIPAVIGYEASLVFLGLKPAT++GLGALLNQVTSS N+ALI SSIVSFA+LTV+ R Sbjct 301 FVSLIPAVIGYEASLVFLGLKPATDIGLGALLNQVTSSDNVALILSSIVSFAVLTVAART 360 Query 361 FANALNDAIDPRVIRR 376 FANALNDAIDPRV++R Sbjct 361 FANALNDAIDPRVVKR 376 Lambda K H a alpha 0.325 0.139 0.407 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 42888624 Query= gi|13507956|ref|NP_109905.1| oligopeptide transport ATP-binding protein OppD [Mycoplasma pneumoniae M129] Length=423 Score E Sequences producing significant alignments: (Bits) Value gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 660 0.0 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 136 2e-36 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 89.0 5e-21 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 77.0 6e-17 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 73.2 1e-15 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 70.9 3e-15 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 70.5 3e-15 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 64.7 2e-13 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 58.5 2e-11 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/400 (79%), Positives = 355/400 (89%), Gaps = 0/400 (0%) Query 1 MALKATNFFTEPEYKLQDDLILDIRDLHVSFKVKDGIMQAVRGVDLKVKKGSIVGIVGES 60 MALK +NFF + + +L+D+LILDI DLHV+FKVKDGI+ AVRG+DLKV++GSIVGIVGES Sbjct 1 MALKRSNFFVDKDQQLKDNLILDITDLHVNFKVKDGILHAVRGIDLKVERGSIVGIVGES 60 Query 61 GSGKSVCVKSIIGFNDGAKTTAKLMNFKNIDISKMKKHQWQYYRGTYVSYISQDPLFSLN 120 GSGKSV VKSIIGFND A+T AKLMNFKN+DI+K+KKHQW+YYRGTYVSYISQDPLFSLN Sbjct 61 GSGKSVSVKSIIGFNDNAQTKAKLMNFKNVDITKLKKHQWKYYRGTYVSYISQDPLFSLN 120 Query 121 PTMTIGRQVKEAIYVSCKRRYYQTKSDLKYDLQTERIDLDTYKEKLAQAKETYKAKTTKA 180 PTMTIG+QVKEAIYV+ KRRY+Q KSDLK+ L + ID TYK KL + K+TY+ K Sbjct 121 PTMTIGKQVKEAIYVASKRRYFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPI 180 Query 181 AVHAKTLEILNFIGIDQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALD 240 V KTLEIL FIGI+ A+KRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALD Sbjct 181 NVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALD 240 Query 241 VTIQAKALNLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNP 300 VTIQAK L LIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAG++VE+GLVEEIFTNP Sbjct 241 VTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNP 300 Query 301 VHPYTWALMASIPEGTDKNAPLTSIPGYIPNMLSPPKGDAFAARNQFALAIDFEHQPPFF 360 +HPYTWAL++SIPE DKN PLTSIPG IPNML+PPKGDAFA+RNQ+ALAIDFE+ PPFF Sbjct 301 LHPYTWALISSIPEQKDKNKPLTSIPGVIPNMLTPPKGDAFASRNQYALAIDFEYHPPFF 360 Query 361 DVTETHKAATWLLHPQAPKVEMPADVKEKIAITRKALAIK 400 +VT+THKAATWLLHPQAPKVE P V + I +T+KAL K Sbjct 361 EVTKTHKAATWLLHPQAPKVEPPQAVIDNITLTKKALQFK 400 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 136 bits (342), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 68/150 (45%), Positives = 103/150 (69%), Gaps = 6/150 (4%) Query 178 TKAAVHAKTLEILNFIGIDQAEKRLKAF--PSEFSGGMRQRIVIAIAVATEPDLIIADEP 235 TK + K E L+ +G+ KR A+ P EFSGG RQRI IA A+ T+P LIIADE Sbjct 656 TKIFMRNKVYEALDSVGL----KREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADEL 711 Query 236 TTALDVTIQAKALNLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEE 295 +ALDV+IQA+ +N++K L N+T++FI+H++S++ C+ + +M+ G++VE+G V+E Sbjct 712 ISALDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDE 771 Query 296 IFTNPVHPYTWALMASIPEGTDKNAPLTSI 325 IF+NPVHPYT +L+ + P+ + N L S Sbjct 772 IFSNPVHPYTRSLIKASPKLSKINVDLASF 801 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 89.0 bits (219), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 136/292 (47%), Gaps = 59/292 (20%) Query 3 LKATNFFTEPEYKLQ-----DDLILDIRDLHVSFKVKDGIMQ--AVRGVDLKVKKGSIVG 55 +K N+ P K Q D I+++++++ + +GI ++GVDL +K + Sbjct 209 VKKVNWLNSPRQKQQAAQIDDQNIIELKNVYKY--ITNGITTNAVLKGVDLAIKSHDFIV 266 Query 56 IVGESGSGKSVCVKSIIGFNDGAKTTAKLMNFKNIDISKMKKHQWQYYRGTYVSYISQDP 115 I+G SGSGK+ + I G D A + + ++N N+ + + +R YV YI Q Sbjct 267 ILGPSGSGKTTLLNIISGM-DRASSGSVIVNGYNMIC--LNDRKLTKFRQKYVGYIFQQ- 322 Query 116 LFSLNPTMTIGRQVKEAIYVSCKRRYYQTKSDLKYDLQTERIDLDTYKEKLAQAKETYKA 175 + L P +T V+E I + +L+ D ++RI +D Sbjct 323 -YGLLPNLT----VRENIEIGA---------NLQPD-PSKRISIDA-------------- 353 Query 176 KTTKAAVHAKTLEILNFIGIDQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEP 235 +L +G+D +K+L P+E SGG +QR+ IA A A P LI DEP Sbjct 354 -------------LLEAVGMDSLQKKL---PNELSGGQQQRVSIARAFAKNPLLIFGDEP 397 Query 236 TTALDVTIQAKALNLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGRL 287 T ALD+ + L ++ T+I ++HN +LIAN D V + G++ Sbjct 398 TGALDLEMTQIVLKQFLAIKKRYQTTMIIVTHN-NLIANLADLVIYVADGKI 448 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 77.0 bits (188), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/230 (26%), Positives = 109/230 (47%), Gaps = 22/230 (10%) Query 161 TYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIGIDQAEKRLKAFPSEFSGGMRQRIVIA 220 T ++K A K K TKA + K +++ +G+ E RL P E SGGM+QR+ +A Sbjct 303 TLQQKEAFEKRYLSRKLTKAEQNKKVSDVIEMVGLKGKEDRL---PDELSGGMKQRVALA 359 Query 221 IAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNITIIFISHNISLIANFCDFVY 280 ++ EP++++ DEP +ALD ++ ++Q+ +T I ++H+ D + Sbjct 360 RSLVVEPEILLLDEPLSALDAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIV 419 Query 281 VMYAGRLVEKGLVEEIFTNPVHPYTWALM--ASIPEGT---DKNAPLTSIPGYIPNMLSP 335 VM G +++ G +I+ +P + + A+I +GT +K L S ++ Sbjct 420 VMNEGNILQVGNPVDIYDSPKTEWIANFIGQANIFKGTYLGEKKIQLQS-----GEIIQT 474 Query 336 PKGDAFAARNQFALAI---DFEHQPP---FFDV---TETHKAATWLLHPQ 376 + + Q+ + I DF+ P FF+V + +K W + Q Sbjct 475 DVDNNYVVGKQYKILIRPEDFDLVPENKGFFNVRVIDKNYKGLLWKITTQ 524 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 73.2 bits (178), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (50%), Gaps = 10/177 (6%) Query 150 YDLQTERIDLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIGIDQAEKRLKAFPSEF 209 Y L+T+++ DT ++ Q K + + K ++ LE+ N + I K L P + Sbjct 315 YSLKTDKLT-DTQLNEIEQIKT--RIVSIKQFINKTALEVANKLAIT---KILTKRPDKI 368 Query 210 SGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNITIIFISHNI 269 SGG +QR+ IA A+ P L++ DEP + LD ++ + I+Q + L IT +F++H+ Sbjct 369 SGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQITTVFVTHDQ 428 Query 270 SLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYTWALMAS----IPEGTDKNAPL 322 + D + M G++ + G E++ P + + + + I E + KN L Sbjct 429 EEAMSISDVIVCMSTGKVQQIGTPSELYLKPANEFVARFLGTPEMNIIECSVKNNQL 485 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 70.9 bits (172), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 37/110 (34%), Positives = 62/110 (56%), Gaps = 2/110 (2%) Query 196 DQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLR 255 D+ + L + SGG +QR+ IA A+A +PD+++ DEPT+ALD LI+QL+ Sbjct 214 DEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLK 273 Query 256 DLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYT 305 + TI+ ++H+++ D GR++E+G ++IFT P T Sbjct 274 E--KFTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQIFTKPKQKAT 321 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 70.5 bits (171), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/254 (26%), Positives = 104/254 (41%), Gaps = 58/254 (23%) Query 44 VDLKVKKGSIVGIVGESGSGKSVCVKSIIGFNDGAKTTAKLMNFKNIDISKMKKHQWQYY 103 V L++ G IV I+G SGSGK+ + I G++ + + + N + K Q Y Sbjct 108 VSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCP---LEKCTSEQLLTY 164 Query 104 RGTYVSYISQD----PLFSLNPTMTIGRQVKEAIYVSCKRRYYQTKSDLKYDLQTERIDL 159 R + Y+ Q L S + I + + YQ R+D+ Sbjct 165 RKNNLGYVYQRYNLIELLSAYDNIAISQNLIPK---------YQ-----------RRLDI 204 Query 160 DTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIGIDQAEKRLKAFPSEFSGGMRQRIVI 219 + EKL + YK FP E SGG +QR+ I Sbjct 205 EELAEKLDIKEILYK------------------------------FPYEMSGGQKQRVAI 234 Query 220 AIAVATEPDLIIADEPTTALDVTIQAKALNLIKQLRDLLNITIIFISHNISLIANFCDFV 279 A A+ EP L++ DEPT ALD +NL++ + TI+ ++H++SL + + Sbjct 235 ARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYKQTILMVTHDVSL-TRIANRI 293 Query 280 YVMYAGRLVEKGLV 293 + G++V LV Sbjct 294 IKISDGKIVSNQLV 307 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 64.7 bits (156), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/285 (26%), Positives = 120/285 (42%), Gaps = 46/285 (16%) Query 16 LQDDLILDIRDLHVSFKVK-DGIMQAVRGVDLKVKKGSIVGIVGESGSGKSVCVKSIIGF 74 L+ D IL + L F K + ++ + +K I I+G+SGSGKS V F Sbjct 11 LKADEILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNH---F 67 Query 75 NDGAKTTAKLMNFKNIDISKMKKHQWQYYRGTYVSYISQDPLFSLNPTMTIGRQVKEAIY 134 N K + K+I I ++ + + L T++I Q E Sbjct 68 NGLIKPNQGDIWVKDIYIGAKQRKIKNFKK--------------LRKTISIVFQFPE--- 110 Query 135 VSCKRRYYQTKSDLKYDLQTERIDLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIG 194 Y L + ++ D +A + Y A+ KAA + L +G Sbjct 111 ---------------YQLFKDTVEKDIMFGPVALGQSKYDARQ-KAAYY------LEMMG 148 Query 195 IDQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQL 254 + L+ P E SGG ++R+ IA +A EP+++I DEPT LD + + + LIK Sbjct 149 LKYP--FLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQLIKTA 206 Query 255 RDLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTN 299 + T+ I+H + + D V V+ G+LV+ E+F + Sbjct 207 KQQQR-TVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMD 250 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 58.5 bits (140), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/267 (26%), Positives = 110/267 (41%), Gaps = 68/267 (25%) Query 41 VRGVDLKVKKGSIVGIVGESGSGKSVCVKSIIGF----NDGAKTTAKLMNFKNIDISKMK 96 +R + V +G V IVG +GSGKS K + G K K ++F N+ Sbjct 24 IRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDNVS----- 78 Query 97 KHQWQYYRGTYVSYISQDPLFSLNPTMTIGRQVKEAIYVSCKRRYYQTKSDLKYDLQTER 156 Y R + I Q+P IG V++ D+ + L+ + Sbjct 79 -----YLRNN-IGIIFQNP-----DNQFIGITVED---------------DIAFGLENK- 111 Query 157 IDLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIGIDQAEKRLKAFPSEFSGGMRQR 216 + + KA + TL+ Q + +K P SGG +QR Sbjct 112 ---------------CFSRQKIKAIIDEVTLQ-------TQTDGFIKQEPHNLSGGQKQR 149 Query 217 IVIAIAVATEPDLIIADEPTTALD----VTIQAKALNLIKQLRDLLNITIIFISHNISLI 272 + IA +A P +II DE T LD TI+ + L KQ + +++IT H++ + Sbjct 150 VAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGKCVISIT-----HDMEEV 204 Query 273 ANFCDFVYVMYAGRLVEKGLVEEIFTN 299 D V VM G+L+++G E+FT+ Sbjct 205 TK-ADKVLVMNEGKLIKQGKPVEVFTS 230 Lambda K H a alpha 0.318 0.134 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 49208950 Query= gi|13507957|ref|NP_109906.1| but only N- and C-term; inbetween (500AA) seg and coil [Mycoplasma pneumoniae M129] Length=851 Score E Sequences producing significant alignments: (Bits) Value gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 1097 0.0 gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 129 8e-34 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 87.8 1e-20 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 89.4 3e-20 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 83.2 3e-18 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 73.9 6e-16 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 70.1 8e-15 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 70.5 9e-15 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 68.2 4e-14 gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 58.9 3e-11 gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 60.1 3e-11 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 60.5 4e-11 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/852 (64%), Positives = 661/852 (78%), Gaps = 5/852 (1%) Query 1 METKKQKQNPLVNVKALSMLFKVRGSFFKALDEIDFTVNEGDFFGVIGESGSGKSTTGKC 60 ME + K+ PLVNVKALSM+FKVRG+ FKALDEI FTVNEGDFFGVIGESGSGKSTTGKC Sbjct 1 MENQNTKK-PLVNVKALSMMFKVRGTLFKALDEIGFTVNEGDFFGVIGESGSGKSTTGKC 59 Query 61 LIRLNIPSGGKVEIANHLISGKKLTRENDHWLKQNVQMVFQDPYSSLNPTKNVLTVISEP 120 LIRLNIPSGGK+EIANHL+SGKKLT+EN+ WLKQN+QMVFQDPYSS+NPTKNVLTVISEP Sbjct 60 LIRLNIPSGGKIEIANHLLSGKKLTKENNQWLKQNIQMVFQDPYSSINPTKNVLTVISEP 119 Query 121 LVITKTVYGEVKEYLKTLAKLSFKTKKELLREDFELETQFYEKFFSKVLFHLETTINKFA 180 LVI+KTV+GE K+YLK+L KLSFK KK LLR D ELET+F+ FF V+ + ++ F Sbjct 120 LVISKTVFGETKQYLKSLQKLSFKVKKTLLRNDIELETKFHNNFFKTVIKQINESLFNFE 179 Query 181 LLQESNNNSSAELAQTILGHTDDLIEALRQEFGLVYEFSSSQSEPLQKALKDKQETLAQD 240 L + S L Q I+ TD IE +R EF L Y+F ++QS PLQKAL D +L Sbjct 180 DLDYKDLKPS-HLRQRIINETDKFIEKIRSEFALFYDFYANQSVPLQKALDDANSSLTPS 238 Query 241 TIDKLKQELYTTQQKAKVSTQAFATWQKLQQTKQNLKAYRAQMAEELQNKPRIYLNAWLL 300 ++ +LK +L Q++AK+S A+ Q L+Q ++ LK Y + ELQ KPRIYLN WLL Sbjct 239 SVIELKNQLKALQKQAKISKAAWDILQALKQNQKELKDYENYVHFELQKKPRIYLNTWLL 298 Query 301 TTKNYIKDSRQNTQLTDDVFAFSYNDMVDKKRRLVLVLSEYYKALPYFYDNWIHQNADRF 360 TTK+YIKDS+QN QLTDD+FAFSYN MVDKKR LVL+LS+YYK LPYFYD + NAD+F Sbjct 299 TTKSYIKDSKQNMQLTDDIFAFSYNSMVDKKRNLVLILSKYYKLLPYFYDQSVFDNADQF 358 Query 361 DELTNAVFFDLIDVVIALNRDFANVESDAKAELIRFVQFIRRLCDLRFAALKKSFKK-QT 419 DE+ N +FFDL++ ++ + F + + K LI+F +F+ +LCDLRF LKKSFKK + Sbjct 359 DEIANLIFFDLVETLLGVTSLFNDALAADKVPLIKFAKFLNKLCDLRFLTLKKSFKKTRV 418 Query 420 NYSFDFNRETELLYANSCYDIKELPQVIQPYWEKLFSDANYDKIAKSVQELNDIISTDIE 479 + SF FN E E+L+ANSCYD++++PQ+I+P+WEKLF++ NY KI SV LN +I+ I Sbjct 419 SCSFSFNSEPEILFANSCYDLQQMPQIIKPFWEKLFNEQNYQKIIDSVSRLNVMIANYIT 478 Query 480 KASNIASEINTKISSFKTEIAELKATFKTEKKAEDHSAQITGLKTQIAEIQTQIKQQKRE 539 KA I I+ K+ FK + LK + KK+E + A I LK + ++ Q+KQ+K Sbjct 479 KAFEIKKTIDEKLREFKQQNLALKKAYSANKKSEANKASINELKVNLKTLKKQLKQEKNT 538 Query 540 VQSTEKAALKPVLKQYKSALHLYKRFKQLLRQFTKQLNLLVKKQQELEKIEEGLDLTIWE 599 + K LKP+LK++ +AL L+ F LR++ K+LN +VKK LE ++ L + Sbjct 539 TKKQSKKELKPLLKEHHTALKLHDEFNHDLRKWFKKLNFMVKKYNRLENSQKKFCLV--K 596 Query 600 RIQLLFYPVEGDLKSELKTRLKSFGVINFEYKRAVRESRVFRLVHFGHDVMKWGLFLPLT 659 +++ LF + L+SEL+ +LK+FGVINFEYKRAV+ES VFRLVHF ++ K LF LT Sbjct 597 KLKALFKKQDETLQSELRPKLKTFGVINFEYKRAVKESNVFRLVHFAKNIFKPFLFFNLT 656 Query 660 KIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALD 719 KIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALD Sbjct 657 KIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALD 716 Query 720 VSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAHP 779 VSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGS DEIF++P Sbjct 717 VSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSNP 776 Query 780 VHPYTRSLIKASPKLSKINIDLASFDEKFTYDSDYSLTNMPSFLKVPNTQEHELYCTQGQ 839 VHPYTRSLIKASPKLSKIN+DLASFDE FTYDSDYSLTNMP ++KVPN++EHELYCTQ Q Sbjct 777 VHPYTRSLIKASPKLSKINVDLASFDENFTYDSDYSLTNMPFYIKVPNSEEHELYCTQKQ 836 Query 840 FDSWIKGASRIN 851 FDSWIK A+ IN Sbjct 837 FDSWIKEATPIN 848 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 129 bits (323), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 64/146 (44%), Positives = 97/146 (66%), Gaps = 2/146 (1%) Query 661 IFMRNKVYEALDSVGLK--REHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISAL 718 I + K E L +G+ ++ +P EFSGG RQRI IA A+ T+P LIIADE +AL Sbjct 180 INVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTAL 239 Query 719 DVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAH 778 DV+IQA+V+ ++K L N+T++FI+H++S++ C+ + +M+ GKIVE+G +EIF + Sbjct 240 DVTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTN 299 Query 779 PVHPYTRSLIKASPKLSKINIDLASF 804 P+HPYT +LI + P+ N L S Sbjct 300 PLHPYTWALISSIPEQKDKNKPLTSI 325 Score = 60.8 bits (146), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/135 (33%), Positives = 66/135 (49%), Gaps = 7/135 (5%) Query 7 KQNPLVNVKALSMLFKVRGSFFKALDEIDFTVNEGDFFGVIGESGSGKSTTGKCLIRLNI 66 K N ++++ L + FKV+ A+ ID V G G++GESGSGKS + K +I N Sbjct 17 KDNLILDITDLHVNFKVKDGILHAVRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFND 76 Query 67 PSGGKVEIANHLISGKKLTRENDHWLK----QNVQMVFQDPYSSLNPTKNVLTVISEPL- 121 + K ++ N +T+ H K V + QDP SLNPT + + E + Sbjct 77 NAQTKAKLMN--FKNVDITKLKKHQWKYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIY 134 Query 122 VITKTVYGEVKEYLK 136 V +K Y + K LK Sbjct 135 VASKRRYFQAKSDLK 149 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 87.8 bits (216), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 64/90 (71%), Gaps = 1/90 (1%) Query 678 REHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKH 737 +E Y++P+E SGGQ+QR+AIARA+I +PKL++ DE ALD + +IN+L+ + K + Sbjct 214 KEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTY 273 Query 738 NLTVLFIAHDLSMVQTVCNRLIIMHRGKIV 767 T+L + HD+S+ + + NR+I + GKIV Sbjct 274 KQTILMVTHDVSLTR-IANRIIKISDGKIV 302 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 89.4 bits (220), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 43/131 (33%), Positives = 78/131 (60%), Gaps = 1/131 (1%) Query 658 LTKIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISA 717 LTK KV + ++ VGLK + R P E SGG +QR+A+AR+L+ +P++++ DE +SA Sbjct 319 LTKAEQNKKVSDVIEMVGLKGKED-RLPDELSGGMKQRVALARSLVVEPEILLLDEPLSA 377 Query 718 LDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFA 777 LD ++ + L+ + KK LT + + HD + +R+++M+ G I++ G+ +I+ Sbjct 378 LDAKVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIYD 437 Query 778 HPVHPYTRSLI 788 P + + I Sbjct 438 SPKTEWIANFI 448 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 83.2 bits (204), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 165/354 (47%), Gaps = 35/354 (10%) Query 466 SVQE---LNDIISTDIEKASNIASEIN-TKISSFKTEIAELKATFKTEKKAEDHSAQITG 521 SVQE LN + IEK I +IN +S FK + EL A K H IT Sbjct 136 SVQEIDQLNKLFHDSIEKPKQIQYQINDLNVSVFKN-LNELTANLKL--IPSKHQFAITN 192 Query 522 LKTQI--------AEIQTQIKQQKREV--QSTEKAALKPVLKQYKS------ALHLYKRF 565 L Q AE +T+ K QK+ E A +KQ+ S H +K Sbjct 193 LNKQTLKQINELEAEFKTKWKLQKQTPIKSGVEHNAKLQAIKQHFSYEKQRLKKHYFKTK 252 Query 566 KQLLRQFTKQLNLLVKKQQELEK-IEEGLDLTIWERIQLLFYPVEGDLKSELKTRLKSFG 624 +L + + L L+ K E K I++ D T ++++ L LK + K L Sbjct 253 VELKQTLVENLKLVKKAISEQTKLIKQSSDYTKLKQLKRLIKVEPNQLKKQYKVFLNQL- 311 Query 625 VINFEYKR-AVRESRVFRLVHFGHDVMKWGLFLPLTKIFMRNKVYEALDSVGLKREHAYR 683 + N+ K + ++++ + ++ F+ T + + NK+ A+ + KR Sbjct 312 IKNYSLKTDKLTDTQLNEIEQIKTRIVSIKQFINKTALEVANKL--AITKILTKR----- 364 Query 684 YPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTVLF 743 P + SGGQ+QR+AIARA++ +PKL++ DE +S LD ++ Q ++ ++ +T +F Sbjct 365 -PDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQITTVF 423 Query 744 IAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAHPVHPYTRSLIKASPKLSKI 797 + HD ++ + ++ M GK+ + G+ E++ P + + + +P+++ I Sbjct 424 VTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPANEFVARFL-GTPEMNII 476 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 73.9 bits (180), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 73/129 (57%), Gaps = 1/129 (1%) Query 648 DVMKWGLFLPLTKIFMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPK 707 D+M + L +K R K L+ +GLK R P E SGGQ++R+AIA L +P+ Sbjct 121 DIMFGPVALGQSKYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPE 180 Query 708 LIIADELISALDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIV 767 ++I DE + LD + +++ ++K AK+ TV I H + V V + ++++ +GK+V Sbjct 181 ILIFDEPTAGLDPEGEREMMQLIKT-AKQQQRTVFMITHQMENVLEVADVVLVLAKGKLV 239 Query 768 ERGSTDEIF 776 + S E+F Sbjct 240 KAASPYEVF 248 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 70.1 bits (170), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 67/120 (56%), Gaps = 5/120 (4%) Query 660 KIFMRNKVYEALDSVGLKRE---HAYRYPHEFSGGQRQRIAIARALITKPKLIIADELIS 716 K F R K+ +D V L+ + + PH SGGQ+QR+AIA L P +II DE + Sbjct 111 KCFSRQKIKAIIDEVTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTA 170 Query 717 ALDVSIQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIF 776 LD + + + LAK+ V+ I HD+ V T +++++M+ GK++++G E+F Sbjct 171 MLDPKAKKTIKQFMVKLAKQGK-CVISITHDMEEV-TKADKVLVMNEGKLIKQGKPVEVF 228 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 70.5 bits (171), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 5/127 (4%) Query 667 VYEALDSVGL---KREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQ 723 V +AL S L +++ +R + SGGQ+QR+ IARA+ +P +++ DE SALD SI Sbjct 203 VRQALISAALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALD-SIA 261 Query 724 AQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAHPVHPY 783 I +L K+ T++ + H ++ + + I G+++E+G+T +IF P Sbjct 262 TNSIELLIQQLKEK-FTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQIFTKPKQKA 320 Query 784 TRSLIKA 790 T S I Sbjct 321 TNSYISG 327 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 68.2 bits (165), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 56/88 (64%), Gaps = 1/88 (1%) Query 680 HAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNL 739 H ++ H+ SGGQ+QR+AIARALI +PK++ DE A+++ I +++ + + Sbjct 181 HRHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGT 240 Query 740 TVLFIAHDLSMVQTVCNRLIIMHRGKIV 767 T++ + H+ +V+ + R+I +H GKI+ Sbjct 241 TIVIVTHNEKIVE-LAKRVIKIHDGKII 267 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 58.9 bits (141), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 58/106 (55%), Gaps = 1/106 (1%) Query 662 FMRNKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVS 721 ++++K+ L V L ++ + S GQ+QR+ IA+ PKL++ DE + LD Sbjct 122 WIKDKILAILKEVNL-NDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPL 180 Query 722 IQAQVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIV 767 +++++++ D K+ +T++F+ HD+ + R+I + +V Sbjct 181 TASKIMDLITDFVKREKITLVFVTHDIDLALKYSTRIIALKNHALV 226 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 60.1 bits (144), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 61/109 (56%), Gaps = 4/109 (4%) Query 671 LDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINIL 730 LD GL+ + P E S GQ++R+A+A L + K +I DE LD Q + N+ Sbjct 197 LDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFLILDEPTVGLD---QMAISNLS 253 Query 731 KDL-AKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSTDEIFAH 778 K L A K ++ ++HD+ + +++I +H+GKI+ + + ++ F++ Sbjct 254 KMLVAMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQTTVNDFFSN 302 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 60.5 bits (145), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 2/96 (2%) Query 671 LDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINIL 730 L++VG+ + P+E SGGQ+QR++IARA P LI DE ALD+ + V+ Sbjct 355 LEAVGMDSLQK-KLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQF 413 Query 731 KDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKI 766 + K++ T++ + H+ +++ + + +I + GKI Sbjct 414 LAIKKRYQTTMIIVTHN-NLIANLADLVIYVADGKI 448 Lambda K H a alpha 0.319 0.133 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 106810821 Query= gi|13507958|ref|NP_109907.1| ribosomal protein L11 [Mycoplasma pneumoniae M129] Length=137 Score E Sequences producing significant alignments: (Bits) Value gi|12044933|ref|NP_072743.1| ribosomal protein L11 (rpl11) [Mycop... 247 4e-88 >gi|12044933|ref|NP_072743.1| ribosomal protein L11 (rpl11) [Mycoplasma genitalium G-37] Length=137 Score = 247 bits (631), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 121/137 (88%), Positives = 132/137 (96%), Gaps = 0/137 (0%) Query 1 MAKKTITRIAKINLLGGQAKPGPALASVGINMGEFTKQFNEKTKDKQGEMIPCVITAYND 60 MAKKT+TRIAKINL+GGQAKPGPALASVGINMGEFTKQFNEKTKD+QGE IPC+ITA+ND Sbjct 1 MAKKTVTRIAKINLIGGQAKPGPALASVGINMGEFTKQFNEKTKDRQGETIPCIITAFND 60 Query 61 KSFDFILKTTPVSILLKQAAKLEKGAKNAKTIVGKITMAKAKEIAQYKLVDLNANTVEAA 120 KSF F+LKTTPVS L+KQAAKLEKGAKNAKTIVGKI++ +AKEIAQYKLVDLNANTVEAA Sbjct 61 KSFTFVLKTTPVSNLIKQAAKLEKGAKNAKTIVGKISLQQAKEIAQYKLVDLNANTVEAA 120 Query 121 LKMVLGTAKQMGIEVIE 137 LKMVLGTAKQMGIEV + Sbjct 121 LKMVLGTAKQMGIEVTD 137 Lambda K H a alpha 0.314 0.130 0.345 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10944075 Query= gi|13507959|ref|NP_109908.1| ribosomal protein L1 [Mycoplasma pneumoniae M129] Length=226 Score E Sequences producing significant alignments: (Bits) Value gi|12044934|ref|NP_072744.1| ribosomal protein L1 (rpL1) [Mycopla... 374 3e-135 >gi|12044934|ref|NP_072744.1| ribosomal protein L1 (rpL1) [Mycoplasma genitalium G-37] Length=226 Score = 374 bits (960), Expect = 3e-135, Method: Compositional matrix adjust. Identities = 181/226 (80%), Positives = 203/226 (90%), Gaps = 0/226 (0%) Query 1 MAKLSKKMKIAVGLVDKTKLYPLQEAVDLVKKTSITKFNGSVDIAVSLNLDTTKAEQQLR 60 M KLSK+M+ L+DK KLYP+QEA +L+KKT+ITKF SVDIAVSLNLDTTKAEQQLR Sbjct 1 MKKLSKRMQAVTKLIDKNKLYPIQEAFELIKKTAITKFVSSVDIAVSLNLDTTKAEQQLR 60 Query 61 GAIAFPHSVGKPIRILAITDDEKAALEAGADFVGGIDKINDIKNGWLDFDLIITSPKFMA 120 GAIAFP S+GK IRILAITDDEK A EAGADFVGG+DKI IKNGWLDFDLIITSPKFM Sbjct 61 GAIAFPFSIGKSIRILAITDDEKKASEAGADFVGGLDKIEAIKNGWLDFDLIITSPKFMG 120 Query 121 ALGKLGKLLGTKGLMPNPKTETVTDDVPAAVRAYKKGKKEYRADSFGNIHMSLGRVDSAS 180 ALGKLGKLLGT+GLMPNPKTETVTDDV +A++AYKKGKKEYR DSFGNIH+SLG+ D+ + Sbjct 121 ALGKLGKLLGTRGLMPNPKTETVTDDVVSAIKAYKKGKKEYRTDSFGNIHLSLGKTDTKT 180 Query 181 NHLVENALALLDLIKSRKPATVKGIYIKNIALTTTMGPSLKVKLPD 226 HLV NA+AL+DLIKS++P+TVKG YIKNIALTTTMGPSLKVKLPD Sbjct 181 EHLVANAMALIDLIKSKRPSTVKGTYIKNIALTTTMGPSLKVKLPD 226 Lambda K H a alpha 0.316 0.134 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22816659 Query= gi|13507960|ref|NP_109909.1| peptidyl-tRNA hydrolase [Mycoplasma pneumoniae M129] Length=188 Score E Sequences producing significant alignments: (Bits) Value gi|12044935|ref|NP_072745.1| peptidyl-tRNA hydrolase (pth) [Mycop... 233 9e-81 >gi|12044935|ref|NP_072745.1| peptidyl-tRNA hydrolase (pth) [Mycoplasma genitalium G-37] Length=189 Score = 233 bits (594), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 110/187 (59%), Positives = 145/187 (78%), Gaps = 0/187 (0%) Query 1 MDKLRLVVGLGNLGKQYAETRHNAGFKVIDRLLSLYHVQLEERNNLGEFILLRKHKVVLA 60 M +L+VGLGNLGK+Y +TRHNAGF V+DRL SL+H+ ++ N LG+++ +++ +LA Sbjct 1 MPTYKLIVGLGNLGKKYEKTRHNAGFMVLDRLASLFHLNFDKTNKLGDYLFIKEKAAILA 60 Query 61 KPNTYMNHSGKFVKWACQNWNIKPDKVMVVYDELAFPLGTVRLKMQGSANNHNGIKSVIA 120 KP T+MN+SG FVKW ++ I +M+V+DE+AF LG +RLKMQGSANNHNGIKSVI Sbjct 61 KPATFMNNSGLFVKWLQDHFQIPLANIMIVHDEIAFDLGVIRLKMQGSANNHNGIKSVIR 120 Query 121 HLNTEHFNRLRFGIKSDNTSNILHEVVMSEFTPAERNLLETALTKAIEALKGYIDGVTML 180 HL+TE FNRLRFGIKS NTSNILHE VMSEF +E LE A+TK++E LK YI+G + Sbjct 121 HLDTEQFNRLRFGIKSQNTSNILHEQVMSEFQNSELTKLEVAITKSVELLKRYIEGEELQ 180 Query 181 KLMEVFN 187 +LME ++ Sbjct 181 RLMEYYH 187 Lambda K H a alpha 0.321 0.136 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17769687 Query= gi|13507961|ref|NP_109910.1| similar to PP-loop superfamily ATPase/cell cycle protein MESJ homologues [Mycoplasma pneumoniae M129] Length=289 Score E Sequences producing significant alignments: (Bits) Value gi|12044936|ref|NP_072746.1| hypothetical protein MG084 [Mycoplas... 445 3e-161 >gi|12044936|ref|NP_072746.1| hypothetical protein MG084 [Mycoplasma genitalium G-37] Length=290 Score = 445 bits (1144), Expect = 3e-161, Method: Compositional matrix adjust. Identities = 205/285 (72%), Positives = 246/285 (86%), Gaps = 0/285 (0%) Query 5 QYIAGVSGGPDSMLLLKLYHKKIACVVHVNYNKRTTALRDQKMVEEYCKQLKVPLIVHTV 64 QYIAGVSGG DSML+LKLY KKIACVVHVNYN R+T+LRDQK+VE+YC++L +PL+VHTV Sbjct 6 QYIAGVSGGSDSMLMLKLYQKKIACVVHVNYNTRSTSLRDQKLVEQYCQKLNIPLVVHTV 65 Query 65 PEDTVWKKNFQAQARKIRFEQFQKAASLYKVDKLLLAHHRDDFIEQAKMQLDARKRAMYY 124 D VWKKNFQ QARKIRF+QF+K A LY+ +KLLLAHHRDDFIEQAKMQLDA+KRA+YY Sbjct 66 DPDLVWKKNFQNQARKIRFDQFKKTAKLYQTNKLLLAHHRDDFIEQAKMQLDAKKRAVYY 125 Query 125 GIKTRGELYGMKVYRPFIKYWKNEILALCEEHKVPYGIDETNAQPIYKRNQVRQEIANWS 184 GIKTR ELYG+K+YRP +KYWK+EI+ALC + +PY IDETN PIYKRN+VR EI WS Sbjct 126 GIKTRCELYGLKIYRPLMKYWKDEIIALCRQDHIPYEIDETNKLPIYKRNEVRLEIEKWS 185 Query 185 KEEKEEFYIGVCAMNRVIGQKLFSLMKRAKQWLAHPDVRELKRYPLPDQRQLVYSFLITH 244 K EKE+FYI +CAMN+ I QKLF LMK+AK+WL PDVRELKR+ + DQ+QL+YS+LI H Sbjct 186 KIEKEQFYIAICAMNKTIAQKLFVLMKKAKKWLLQPDVRELKRFSIIDQKQLIYSYLIYH 245 Query 245 HIDVTGDKIDAILDFIQPFQQKHYRLKDEIFLSIKDERLTLLYKS 289 I+V G+KIDAILDFIQP QQK YRL+++IFL +K++ L LLYKS Sbjct 246 KINVNGEKIDAILDFIQPSQQKQYRLQNDIFLMVKNQCLALLYKS 290 Lambda K H a alpha 0.323 0.138 0.414 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31108731 Query= gi|13507962|ref|NP_109911.1| HPr(Ser) kinase [Mycoplasma pneumoniae M129] Length=312 Score E Sequences producing significant alignments: (Bits) Value gi|12044937|ref|NP_072747.1| hpr(ser) kinase, putative [Mycoplasm... 459 4e-166 >gi|12044937|ref|NP_072747.1| hpr(ser) kinase, putative [Mycoplasma genitalium G-37] Length=311 Score = 459 bits (1180), Expect = 4e-166, Method: Compositional matrix adjust. Identities = 227/311 (73%), Positives = 264/311 (85%), Gaps = 0/311 (0%) Query 1 MKKLLVKELIEQFQDCVNLIDGHTNTSNVIRVPGLKRVVFEMLGLFSSQIGSVAILGKRE 60 MK L VK L+ QF DC+ LIDG N NVI +PGLKR VFE+LGLF IGSVAILGKRE Sbjct 1 MKHLTVKALVLQFNDCIQLIDGKNNIDNVITIPGLKRSVFELLGLFCKPIGSVAILGKRE 60 Query 61 FGFLSQKTLVEQQQILHNLLKLNPPAIILTKSFTDPTVLLQVNQTYQVPILKTDFFSTEL 120 F FL+QK + +Q++I+ NLLKL PPA+ILTKSF D VLL VNQTYQVPILKT+ FSTEL Sbjct 61 FIFLNQKPVEQQKKIIANLLKLKPPAVILTKSFLDCGVLLAVNQTYQVPILKTNLFSTEL 120 Query 121 SFTVETYINEQFATVAQIHGVLLEVFGVGVLLTGRSGIGKSECALDLINKNHLFVGDDAI 180 SFTVETYINEQFATV ++HGVLLE+FGVGV L G+SGIGKSE ALDLINKNHL +GDDAI Sbjct 121 SFTVETYINEQFATVQKLHGVLLEIFGVGVFLEGKSGIGKSESALDLINKNHLLIGDDAI 180 Query 181 EIYRLGNRLFGRAQEVAKKFMEIRGLGIINVERFYGLQITKQRTEIQLMVNLLSLEKQTT 240 EIYRLGNRLFGRAQ +AK FMEIRGLGIIN+ER YGLQITK++TEIQL ++LLSLE++ Sbjct 181 EIYRLGNRLFGRAQALAKGFMEIRGLGIINIERAYGLQITKEQTEIQLAISLLSLEEKNN 240 Query 241 VTFERLGTELKKQRLLGVDLSFYEIPISPGRKTSEIIESAVIDFKLKHSGYNSALDFIEN 300 +FERLG++LK + LLGV +S+Y+IPIS GRKTSEIIESAVIDFKLK SGYNSA +FI Sbjct 241 ASFERLGSDLKLKNLLGVKISYYQIPISSGRKTSEIIESAVIDFKLKKSGYNSANEFILK 300 Query 301 QKAILKRKKDE 311 Q+A+L+ + DE Sbjct 301 QRAMLEEQTDE 311 Lambda K H a alpha 0.321 0.139 0.382 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 34375858 Query= gi|13507963|ref|NP_109912.1| prolipoprotein diacylglyceryl transferase but unknown TM contating C-term; bidomainal [Mycoplasma pneumoniae M129] Length=389 Score E Sequences producing significant alignments: (Bits) Value gi|12044938|ref|NP_072748.1| prolipoprotein diacylglyceryl transf... 558 0.0 >gi|12044938|ref|NP_072748.1| prolipoprotein diacylglyceryl transferase (lgt) [Mycoplasma genitalium G-37] Length=382 Score = 558 bits (1439), Expect = 0.0, Method: Compositional matrix adjust. Identities = 285/383 (74%), Positives = 321/383 (84%), Gaps = 2/383 (1%) Query 7 SRPPWSTAFYLGPGFPIQWYGIIVAIGIAFGILMFVLKLIYFYKIQDNSFYFFIFIAVLT 66 +RP WSTAF +G GFPIQWYGIIV+IGI F ILMFV KLIY YK+QDNSFYFFIFIAVLT Sbjct 2 NRPSWSTAFNIGGGFPIQWYGIIVSIGIIFAILMFVFKLIYCYKLQDNSFYFFIFIAVLT 61 Query 67 MVLGARAWYFLIEAVDGRSSGSNFFDFRNGGLAIQGGVLLTTLAGIIYFNVFLNMKTTKT 126 MVLGAR W F+I D + +NFFDFRNGGLAIQGG+LLT++ G+IYFN FLN KT KT Sbjct 62 MVLGARLWSFVIG--DSNFANNNFFDFRNGGLAIQGGILLTSIVGVIYFNFFLNSKTNKT 119 Query 127 KTTAKLLNNKNQIKTVYVERNISVFVMLDLIAPCVLIGQAIGRWGNFFNAEVYGAALVGS 186 KT A+LLNNKN+IK VYVERNISV VMLDLIAPCVLIGQAIGRWGNFFN EVYG AL G+ Sbjct 120 KTIAELLNNKNEIKAVYVERNISVLVMLDLIAPCVLIGQAIGRWGNFFNQEVYGFALAGT 179 Query 187 KNDTLSAANTTWGFLRILMPKVWDGMFINGSFRIPLFLIESFFNTIFFVFIYFVMDHIKG 246 ND + ANT WGFL+ILMPKVWDGM+I+G FRIPLFLIESFFNTIFFV IYFVMD I+G Sbjct 180 MNDPQALANTQWGFLKILMPKVWDGMWIDGQFRIPLFLIESFFNTIFFVLIYFVMDFIRG 239 Query 247 IRSGTIGFSYFLATGIVRLILETQRDEAFKYNTSIVFSALLILVGIVGIIYCQTLAIKLR 306 ++SGTIGFSYFLATGI+RLILE RD+ F + TSI S L I+VGI+GI YCQ + +KLR Sbjct 240 VKSGTIGFSYFLATGIIRLILENFRDQTFYFQTSITTSILFIVVGILGIFYCQFIHVKLR 299 Query 307 GYFWTYFFLYGWYKVAAFFTTLFMKDRTQACSSKFAFYEKSLPEKERSFFQLKYYNDVLP 366 YFWTYFFLY +YKVAAFFTTLF+ +R Q KFAFYEKSLP K+RSFF++KYYNDV Sbjct 300 NYFWTYFFLYAFYKVAAFFTTLFLNNRKQMAQQKFAFYEKSLPNKKRSFFEMKYYNDVTT 359 Query 367 PKIYRLYDHEMLMFDKLEAVPEA 389 PKIYRL D EM +FDKLEAV + Sbjct 360 PKIYRLTDQEMKLFDKLEAVTTS 382 Lambda K H a alpha 0.331 0.145 0.453 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44722677 Query= gi|13507964|ref|NP_109913.1| ribosomal protein S12 [Mycoplasma pneumoniae M129] Length=139 Score E Sequences producing significant alignments: (Bits) Value gi|12044939|ref|NP_072749.1| ribosomal protein S12 (rpS12) [Mycop... 270 6e-97 >gi|12044939|ref|NP_072749.1| ribosomal protein S12 (rpS12) [Mycoplasma genitalium G-37] Length=139 Score = 270 bits (690), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 133/139 (96%), Positives = 136/139 (98%), Gaps = 0/139 (0%) Query 1 MATIAQLIRKPRKKKKVKSKSPALHYNLNLLNKKVTNVYSPLKRGVCTRVGTMTPKKPNS 60 MATIAQLIRKPR+KKKVKSKSPALHYNLNLLNKK TNVYSPLKRGVCTRVGTMTP+KPNS Sbjct 1 MATIAQLIRKPRQKKKVKSKSPALHYNLNLLNKKTTNVYSPLKRGVCTRVGTMTPRKPNS 60 Query 61 ALRKYAKVRLTNGFEVLTYIPGEGHNLQEHSVTLLRGGRVKDLPGVRYHIVRGTLDTVGV 120 ALRKYAKVRLTNGFEVL YIPGEGHNLQEHSVTLLRGGRVKDLPGVRYHIVRGTLDTVGV Sbjct 61 ALRKYAKVRLTNGFEVLAYIPGEGHNLQEHSVTLLRGGRVKDLPGVRYHIVRGTLDTVGV 120 Query 121 EKRRQQRSAYGAKKPKAKS 139 +KRRQQRSAYGAKKPK KS Sbjct 121 DKRRQQRSAYGAKKPKPKS 139 Lambda K H a alpha 0.316 0.133 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11235917 Query= gi|13507965|ref|NP_109914.1| ribosomal protein S7 [Mycoplasma pneumoniae M129] Length=155 Score E Sequences producing significant alignments: (Bits) Value gi|12044940|ref|NP_072750.1| ribosomal protein S7 (rpS7) [Mycopla... 278 7e-100 >gi|12044940|ref|NP_072750.1| ribosomal protein S7 (rpS7) [Mycoplasma genitalium G-37] Length=155 Score = 278 bits (712), Expect = 7e-100, Method: Compositional matrix adjust. Identities = 133/155 (86%), Positives = 148/155 (95%), Gaps = 0/155 (0%) Query 1 MRKNRAPKRTVLPDPVFNNTLVTRIINVIMEDGKKGLAQRILYGAFDLIEQRTKEKPLTV 60 MRKNRA KRTVLPDPVFNNTLVTRIINVIM+DGKKGLAQRILYGAF++IE+RT ++PLTV Sbjct 1 MRKNRALKRTVLPDPVFNNTLVTRIINVIMKDGKKGLAQRILYGAFEIIEKRTNQQPLTV 60 Query 61 FERAVGNVMPRLELRVRRIAGSNYQVPTEVPQDRKIALALRWIAMFARKRHEKTMLEKIA 120 FE+AV NVMPRLEL+VRRIAGSNYQVPTEVP DR+IALALRWI +FA KR+EKTMLE++A Sbjct 61 FEKAVDNVMPRLELKVRRIAGSNYQVPTEVPPDRRIALALRWIVIFANKRNEKTMLERVA 120 Query 121 NEIIDASNNTGAAIKKKDDTHKMAEANKAFAHMRW 155 NEIIDA NNTGA++KKKDDTHKMAEANKAFAHMRW Sbjct 121 NEIIDAFNNTGASVKKKDDTHKMAEANKAFAHMRW 155 Lambda K H a alpha 0.321 0.134 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13380204 Query= gi|13507966|ref|NP_109915.1| elongation factor G [Mycoplasma pneumoniae M129] Length=688 Score E Sequences producing significant alignments: (Bits) Value gi|12044941|ref|NP_072751.1| elongation factor G (fus) [Mycoplasm... 1290 0.0 gi|12044990|ref|NP_072800.1| GTP-binding membrane protein (lepA) ... 108 3e-26 gi|12045310|ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplas... 65.9 4e-13 gi|12044994|ref|NP_072804.1| translation initiation factor 2 (inf... 63.5 4e-12 >gi|12044941|ref|NP_072751.1| elongation factor G (fus) [Mycoplasma genitalium G-37] Length=688 Score = 1290 bits (3339), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/688 (91%), Positives = 651/688 (95%), Gaps = 0/688 (0%) Query 1 MARTVDLINFRNFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERG 60 M+RTVDL NFRNFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERG Sbjct 1 MSRTVDLKNFRNFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERG 60 Query 61 ITITSAATSVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVW 120 ITITSAATSVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVW Sbjct 61 ITITSAATSVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVW 120 Query 121 RQASRYEVPRIIFVNKMDKTGANFERSVQSIQQRLGVKAVPIQLPIGAENDFNGIIDLIE 180 RQASRYEVPR+IFVNKMDKTGANFERSV SIQQRLGVKAVPIQ PIGAENDFNGIID+I Sbjct 121 RQASRYEVPRVIFVNKMDKTGANFERSVLSIQQRLGVKAVPIQFPIGAENDFNGIIDIIT 180 Query 181 EKVYFFDGGKEEKAEEKPIPDQFKDQVKQMRAHLVEEVANFDDQLMADYLEGKEISIADI 240 +K YFFDG KEE A EKPIP+Q+ DQV+++ +LVEEVA+ DDQLMADYL+GK I I I Sbjct 181 KKAYFFDGNKEENAIEKPIPEQYVDQVEKLYNNLVEEVASLDDQLMADYLDGKPIEIDAI 240 Query 241 KRCIRKGVIGCQFFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVPQAKAYGEDGNEVLIS 300 K IR GVI C+FFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVP AKA + E+ I Sbjct 241 KNAIRNGVIHCKFFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVPPAKAIDANNKEISIK 300 Query 301 ASDDAPFVGLAFKVATDPFVGRLTFVRVYSGVLKSGSYVKNVRKNKKERVSRLVKMHAQN 360 ASDDA F+GLAFKVATDPFVGRLTF+RVY+GVLKSGSYVKNVRKNKKERVSRLVKMHAQN Sbjct 301 ASDDANFIGLAFKVATDPFVGRLTFIRVYAGVLKSGSYVKNVRKNKKERVSRLVKMHAQN 360 Query 361 RNEIEEIRAGDICAIIGLKDTTTGETLVDDKIDVQLEAMQFAQPVISLAVEPKTKADQEK 420 RNEI+EIRAGDICA+IGLKDTTTGETL DDK+DVQLEAMQFA+PVISLAVEPKTKADQEK Sbjct 361 RNEIDEIRAGDICAVIGLKDTTTGETLTDDKLDVQLEAMQFAEPVISLAVEPKTKADQEK 420 Query 421 MSIALSKLAEEDPTFKTFTDPETGQTIIAGMGELHLDILVDRMRREFKVEVNVGAPQVSF 480 MSIALSKLAEEDPTFKTF+DPETGQTIIAGMGELHLDILVDRM+REFKVEVN+GAPQVSF Sbjct 421 MSIALSKLAEEDPTFKTFSDPETGQTIIAGMGELHLDILVDRMKREFKVEVNIGAPQVSF 480 Query 481 RETFNKESEVEGKYIKQSGGRGQYGHVKIRFEPNKDKGFEFVDKIVGGRIPREYIKPVQA 540 RETF SEVEGKYIKQSGGRGQYGHVKIRFEPNKDKGFEFVDKIVGGRIPREYIKPVQ Sbjct 481 RETFKSTSEVEGKYIKQSGGRGQYGHVKIRFEPNKDKGFEFVDKIVGGRIPREYIKPVQT 540 Query 541 GLENAMASGPLAGYPMIDIKATLFDGSFHEVDSSEMAFKIAASLALKEAGKVCSPVLLEP 600 GLENAM SGPLAGYPMIDIKATLFDGSFHEVDSSEMAFKIAASLALKEAGK C+PVLLEP Sbjct 541 GLENAMNSGPLAGYPMIDIKATLFDGSFHEVDSSEMAFKIAASLALKEAGKQCNPVLLEP 600 Query 601 IMAIEVTVPEQYFGDTMGDISSRRGLIEGTEQRDNVQVIKAKVPLKEMFGYATDLRSFSQ 660 IMAIEVTVPEQYFGDTMGDISSRRG+IEGTEQRDNVQ+IKAKVPLKEMFGYATDLRSFSQ Sbjct 601 IMAIEVTVPEQYFGDTMGDISSRRGIIEGTEQRDNVQLIKAKVPLKEMFGYATDLRSFSQ 660 Query 661 GRGNYVMQFSHYAETPKSVVNEIIATKK 688 GRGNYVMQFSHYAETPKSVVNEIIA KK Sbjct 661 GRGNYVMQFSHYAETPKSVVNEIIANKK 688 >gi|12044990|ref|NP_072800.1| GTP-binding membrane protein (lepA) [Mycoplasma genitalium G-37] Length=598 Score = 108 bits (269), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/161 (41%), Positives = 92/161 (57%), Gaps = 9/161 (6%) Query 9 NFRNFGIMAHIDAGKTTTSERILFHS-GRIHKIGETHDGESVMDWMEQEKERGITITSAA 67 N RNF I+AHID GK+T S+R+L HS G ++ + ++D ME E+ERGITI A Sbjct 5 NIRNFSIIAHIDHGKSTLSDRLLEHSLGFEKRLLQAQ----MLDTMEIERERGITIKLNA 60 Query 68 T----SVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQA 123 +V N +LIDTPGHVDFT EV RSL +G + ++DA G++ QT + A Sbjct 61 VELKINVDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNAYLA 120 Query 124 SRYEVPRIIFVNKMDKTGANFERSVQSIQQRLGVKAVPIQL 164 + I +NK+D A+ E + S+ LGV+ I L Sbjct 121 LENNLEIIPVINKIDMDNADIETTKDSLHNLLGVEKNSICL 161 Score = 71.2 bits (173), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 112/256 (44%), Gaps = 34/256 (13%) Query 247 GVIGCQFFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVPQAKAYGEDGNEVLISASDDAP 306 ++G + + SA N GI L+ ++ +P P + P Sbjct 150 NLLGVEKNSICLVSAKANLGIDQLIQTIIAKIPPP------------------KGEINRP 191 Query 307 FVGLAFKVATDPFVGRLTFVRVYSGVLKSGSYVKNVRKNKKERVSRL-VKMHAQNRNEIE 365 L F DP+ G + F+RV+ G LK V+ ++ N ++ L VK + + Sbjct 192 LKALLFDSYYDPYKGVVCFIRVFDGCLKVNDKVRFIKSNSVYQIVELGVKTPFFEKR--D 249 Query 366 EIRAGDI----CAIIGLKDTTTGETLV--DDKIDVQLEAMQFAQPVISLAVEPKTKADQE 419 +++AGD+ I L+D G+T+V DD+ L + P+I + P +D + Sbjct 250 QLQAGDVGWFSAGIKKLRDVGVGDTIVSFDDQFTKPLAGYKKILPMIYCGLYPVDNSDYQ 309 Query 420 KMSIALSKLAEEDPTFKTFTDPETGQTIIAG-----MGELHLDILVDRMRREFKVEVNVG 474 + +A+ K+ D + + ET Q + G +G LH+D++ +R+ RE+ +++ Sbjct 310 NLKLAMEKIIISDAALE--YEYETSQALGFGVRCGFLGLLHMDVIKERLEREYNLKLISA 367 Query 475 APQVSFRETFNKESEV 490 P V ++ E+ Sbjct 368 PPSVVYKVLLTNGKEI 383 >gi|12045310|ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplasma genitalium G-37] Length=394 Score = 65.9 bits (159), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/128 (36%), Positives = 61/128 (48%), Gaps = 3/128 (2%) Query 12 NFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERGITITSAATSVS 71 N G + HID GKTT + I + K T E +D +EK RGITI SA S Sbjct 14 NVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDE--IDKAPEEKARGITINSAHVEYS 71 Query 72 WKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQASRYEVPR- 130 +D PGH D+ + +DGAI V+ A V PQT A + VP+ Sbjct 72 SDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHILLARQVGVPKM 131 Query 131 IIFVNKMD 138 ++F+NK D Sbjct 132 VVFLNKCD 139 >gi|12044994|ref|NP_072804.1| translation initiation factor 2 (infB) [Mycoplasma genitalium G-37] Length=619 Score = 63.5 bits (153), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 19/140 (14%) Query 15 IMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERGITITSAATSV-SWK 73 IM H+D GKT+ + I + + G GIT A V + + Sbjct 127 IMGHVDHGKTSLLDTIRKTNVTAKEFG------------------GITQKIGAYQVKNHQ 168 Query 74 NCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQASRYEVPRIIF 133 N ++ IDTPGH FT+ R +V D + V+ A G++ QTE A P I+F Sbjct 169 NKTITFIDTPGHEAFTLMRARGAKVTDIVVLVVAADDGIKKQTEEAISHAKSANTPIIVF 228 Query 134 VNKMDKTGANFERSVQSIQQ 153 +NKMDK AN + +Q + + Sbjct 229 INKMDKPTANPDLVIQQLNK 248 Lambda K H a alpha 0.318 0.136 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 84721871 Query= gi|13507967|ref|NP_109916.1| ribosomal protein S6 but seg N-term [Mycoplasma pneumoniae M129] Length=215 Score E Sequences producing significant alignments: (Bits) Value gi|12044942|ref|NP_072752.1| ribosomal protein S6 (rpS6) [Mycopla... 276 3e-97 >gi|12044942|ref|NP_072752.1| ribosomal protein S6 (rpS6) [Mycoplasma genitalium G-37] Length=208 Score = 276 bits (707), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 135/200 (68%), Positives = 159/200 (80%), Gaps = 2/200 (1%) Query 1 MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIKKQLSAHYYRW 60 M YNIILLVDG+LSLEQANQV +K Q+ L ++EYLGLKELAYPIKKQLSAHYYRW Sbjct 1 MHYNIILLVDGTLSLEQANQVEQKHQKLLEKATEFKSEYLGLKELAYPIKKQLSAHYYRW 60 Query 61 KFSGDNQSTKDFKRTANINKQVLRELIINLEREYGYLASINPKKQQLALQKRAKYDEIIA 120 F G++ TK+FKR ANINKQ++RELIIN E++YGYL S+NPKKQQL+LQK KY+EIIA Sbjct 61 SFHGESNCTKEFKRAANINKQIIRELIINREKDYGYLGSVNPKKQQLSLQKLTKYNEIIA 120 Query 121 RENNPENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVVQKMGNFDSVQANPYRPRFKR 180 ENNP+NPD PVTSGLAS +PRLSR EK ++ + E W VV + GNFD+VQ NPYRPR KR Sbjct 121 SENNPDNPDAPVTSGLASVKPRLSRVEKQKERELEKWTVVHQSGNFDTVQINPYRPRIKR 180 Query 181 FNAEHVNQRQNQQNNNNNRF 200 F NQ+ +Q NNN RF Sbjct 181 FLQN--NQQTSQANNNQPRF 198 Lambda K H a alpha 0.313 0.129 0.362 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21238148 Query= gi|13507968|ref|NP_109917.1| single-stranded DNA binding protein [Mycoplasma pneumoniae M129] Length=166 Score E Sequences producing significant alignments: (Bits) Value gi|12044943|ref|NP_072753.1| single-stranded DNA-binding protein ... 202 2e-69 >gi|12044943|ref|NP_072753.1| single-stranded DNA-binding protein (ssb) [Mycoplasma genitalium G-37] Length=160 Score = 202 bits (514), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 96/165 (58%), Positives = 126/165 (76%), Gaps = 5/165 (3%) Query 1 MNRVFLFGKLSFDPNKLQTRTNNIGASFSLACIDSSGFNDSKSYIRITAWGKVASFVLTL 60 MNRVFLFGKLSF PN+LQT+ +GA+FS+ C+DSSGFN++KS+IR+TAWGKVASF++ Sbjct 1 MNRVFLFGKLSFTPNRLQTKNGTLGATFSMECLDSSGFNNAKSFIRVTAWGKVASFIVAQ 60 Query 61 KPGDSVFVEGRLSTYKMNNRSDDPNSKATYALQVIADKVYRPDEENSLEQPVDKATVIDS 120 PG +FVEGRL+TYK+ N + K TYALQV ADK++ PDE+ + E+P+ K+TV+DS Sbjct 61 NPGVMLFVEGRLTTYKITNSEN----KNTYALQVTADKIFHPDEKTTNEEPI-KSTVVDS 115 Query 121 PFLAAKTNATENELAQAFPISLDDEDDDINPILNNDSQLEEESDD 165 PF+ K + TE E QAFP + + ++I PI ND QLEEESDD Sbjct 116 PFMNPKASVTEAEFEQAFPHQDETDFNNITPIFENDVQLEEESDD 160 Lambda K H a alpha 0.311 0.130 0.361 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14785206 Query= gi|13507969|ref|NP_109918.1| ribosomal protein S18 [Mycoplasma pneumoniae M129] Length=104 Score E Sequences producing significant alignments: (Bits) Value gi|12044944|ref|NP_072754.1| ribosomal protein S18 (rpS18) [Mycop... 156 6e-53 >gi|12044944|ref|NP_072754.1| ribosomal protein S18 (rpS18) [Mycoplasma genitalium G-37] Length=105 Score = 156 bits (394), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 75/104 (72%), Positives = 82/104 (79%), Gaps = 0/104 (0%) Query 1 MMNNEHDNFQKEVETTTETTFNREEGKRMVRPLFKRSKKYCRFCAIGQLRIDLIDDLEAL 60 M+N E D Q E N+ + KR +P FKR+KKYCRFCAIGQLRID IDDLEA+ Sbjct 2 MINKEQDLNQLETNQEQSVEQNQTDEKRKPKPNFKRAKKYCRFCAIGQLRIDFIDDLEAI 61 Query 61 KRFLSPYAKINPRRITGNCQMHQRHVAKALKRARYLALVPFVKD 104 KRFLSPYAKINPRRITGNC MHQRHVA ALKRARYLALVPF+KD Sbjct 62 KRFLSPYAKINPRRITGNCNMHQRHVANALKRARYLALVPFIKD 105 Lambda K H a alpha 0.325 0.137 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6631785 Query= gi|13507970|ref|NP_109919.1| ribosomal protein L9 [Mycoplasma pneumoniae M129] Length=149 Score E Sequences producing significant alignments: (Bits) Value gi|12044945|ref|NP_072755.1| ribosomal protein L9 (rpL9) [Mycopla... 216 2e-75 >gi|12044945|ref|NP_072755.1| ribosomal protein L9 (rpL9) [Mycoplasma genitalium G-37] Length=150 Score = 216 bits (551), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 103/147 (70%), Positives = 126/147 (86%), Gaps = 0/147 (0%) Query 1 MKVILKQDVSNLGKRFDVVDVKDGYAIHFLFPKKLAAPLTKKSLQDRDLFLKKQQEHYEI 60 MK+ILKQDV+ LGKRFDVV+VKDG+AIHFLFPKKLAAPLTKK++ +RDLFLK+QQE Y+ Sbjct 1 MKIILKQDVAKLGKRFDVVEVKDGFAIHFLFPKKLAAPLTKKAIANRDLFLKQQQEQYQK 60 Query 61 NKALSHKLKEVIEQTELHFSLKEHNGRPYGSIITKQIINQAHTKGMALQKFMFKDNVRLG 120 N+AL+ KLK VIEQT L F LK+H+G+PYGSIITKQIIN A + + LQ+FMFKDNVRL Sbjct 61 NRALAEKLKLVIEQTPLTFQLKQHDGKPYGSIITKQIINLAKQQRLDLQRFMFKDNVRLQ 120 Query 121 FGDHEITLHIFEDTTAVLKVKVTPDNG 147 FG+H++ LH+FE+ TA L V V P+NG Sbjct 121 FGEHKLILHLFEEITATLTVIVNPENG 147 Lambda K H a alpha 0.320 0.137 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12507582 Query= gi|13507971|ref|NP_109920.1| replicative DNA helicase DnaB [Mycoplasma pneumoniae M129] Length=473 Score E Sequences producing significant alignments: (Bits) Value gi|12044946|ref|NP_072756.1| replicative DNA helicase (dnaB) [Myc... 607 0.0 >gi|12044946|ref|NP_072756.1| replicative DNA helicase (dnaB) [Mycoplasma genitalium G-37] Length=446 Score = 607 bits (1565), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/452 (68%), Positives = 368/452 (81%), Gaps = 10/452 (2%) Query 26 MQALVQDAVGVDLILTKLEPKDFFGFPFNFIFQTAQENYSEGNKLFGSALLEAVKFKLDT 85 MQA+ Q++ G+DLI KLEP DFF PF IFQTA+ENY N + GS LLEAVKFKLD Sbjct 1 MQAVAQNSEGIDLIFNKLEPIDFFATPFKLIFQTAKENYQLNNPIIGSGLLEAVKFKLDA 60 Query 86 -DSKTQREIEGLFEDVLLKGLPFLERDIKVFVDVVKKASIFRQLKQFAKKVEKEEFKVKD 144 D T+ E+E LF +LL LP + +IK VDVVKKASIFR+L+QFAK+V EEFK+K+ Sbjct 61 NDQSTKSELEILFTKILLIRLPPNQTEIKTLVDVVKKASIFRRLQQFAKRVYNEEFKLKE 120 Query 145 DRFEGYLQAIQNDFTKIIHSAFVSIPGLSYDEIVREEEELIPKVYRGELTVKGLKSGFYP 204 DRFEGYLQAIQ+DF KIIHSAF +I SYDEI +EE LI KV+RGEL + GL SGF Sbjct 121 DRFEGYLQAIQDDFVKIIHSAFSNIFAFSYDEIANQEEALIKKVHRGELIISGLSSGFLK 180 Query 205 LDQLTSGWKEGELIVVAARPGRGKTALLINFLQGAVNDSEKFDKNKDVLLFFSLEMRNRE 264 LDQLTSGWK GELIV+AARPGRGKTALLINF+ A +++ D DV+LFFSLEMRNRE Sbjct 181 LDQLTSGWKPGELIVIAARPGRGKTALLINFMASA---AKQIDPKTDVVLFFSLEMRNRE 237 Query 265 IYQRHLMLESQVNYTLTSRQRLANVYDDLIKASEVLRDLPIKIFDYSTITLDEIRAQITE 324 IYQRHLM ESQ +YTLT+RQR+ NV+++L++AS +++LPIK+FDYS++TL EIR QITE Sbjct 238 IYQRHLMHESQTSYTLTNRQRINNVFEELMEASSRIKNLPIKLFDYSSLTLQEIRNQITE 297 Query 325 VSKTNNVKLVVIDYLQLVNAFKNSYNISRQQEVTMISKSLKSFAKEFNVPIIAAAQLSRR 384 VSKT+NV+LV+IDYLQLVNA KN+Y ++RQQEVTMIS+SLK+FAKEFN PIIAAAQLSRR Sbjct 298 VSKTSNVRLVIIDYLQLVNALKNNYGLTRQQEVTMISQSLKAFAKEFNTPIIAAAQLSRR 357 Query 385 IEERKDSRPILSDLRESGSIEQDADMVLFIHRVKDEDSENQEAIGHNNIFQVELILEKNR 444 IEERKDSRPILSDLRESGSIEQDADMVLFIHR D+ E +E + N+F+VELILEKNR Sbjct 358 IEERKDSRPILSDLRESGSIEQDADMVLFIHRTNDDKKEQEEE--NTNLFEVELILEKNR 415 Query 445 SGPTGKVQFDFQSDVSTFRVREYNP---DGYS 473 +GP GKV+ +F+SD S+F + +Y+P D YS Sbjct 416 NGPNGKVKLNFRSDTSSF-ISQYSPSFDDQYS 446 Lambda K H a alpha 0.319 0.136 0.371 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 55905087 Query= gi|13507972|ref|NP_109921.1| excreted conserved protein [Mycoplasma pneumoniae M129] Length=454 Score E Sequences producing significant alignments: (Bits) Value gi|12044947|ref|NP_072757.1| lipoprotein, putative [Mycoplasma ge... 396 1e-137 >gi|12044947|ref|NP_072757.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=398 Score = 396 bits (1017), Expect = 1e-137, Method: Compositional matrix adjust. Identities = 223/447 (50%), Positives = 285/447 (64%), Gaps = 56/447 (13%) Query 1 MKYKTVKSIPLFLLG-SIVF-TACSTPQSTFHLPVQTTVSAIKKDISGKTATAVKAASSS 58 MK K K +PL S VF TACSTPQS+F LP QTT+S +K I+G Sbjct 1 MKLKFYK-LPLITTAFSFVFLTACSTPQSSFFLPAQTTISTLK--INGM----------- 46 Query 59 SSTTTSNDDNNQKGYFLETNRSTGTYDPNNSTRLIKLGESGDFHAADQNKPEEALFERLY 118 N+ GYFLET RS G+Y+P S +IKLG+ +F D K +E LF +Y Sbjct 47 ---------ENKTGYFLETQRSRGSYNPTASLTMIKLGDEKEFKNVDTTKQDEVLFANIY 97 Query 119 GGIASLLNFRIIKPALTYWNTVTPSLKAIGKSSNLITFSQDIDETELQRALANNLIVADD 178 GGI+SLLNFRII+P LTYWN V SL IG +++LITF + +L +ALANNLIVAD+ Sbjct 98 GGISSLLNFRIIQPMLTYWNLVNNSLSQIGSTNDLITFKDSGYKDQLAKALANNLIVADE 157 Query 179 GNNNFWFGLKSLSFNSAKLTDNAQTQMAQKTTQAVTLKSQAQMSSTNTKNTNKKIDLRDK 238 GNNNFWFGLK+L F++ KL N A +T+A T T+NTN KID R+K Sbjct 158 GNNNFWFGLKALKFDTVKLQAN---NTATSSTRAST-----------TQNTNNKIDAREK 203 Query 239 ITLSSTMNTQGSGDNKNPSSGLIQKLVSVENIEAEFSFVKTGFNGNEIKFGDFVTENSPT 298 IT++ G+G N + +QKL+ +ENIE EFSFVKTGFNGNEIKF D+VT++SPT Sbjct 204 ITIN------GNGGTNNDQNATVQKLIGIENIEVEFSFVKTGFNGNEIKFEDYVTDSSPT 257 Query 299 TTQLKQVWKKKWGTELKKTNYKLQLNNFSLLLTYTPEVNKVEKGNNGDSNKGTIATPNGF 358 T+ LKQVWK KW TEL T++K +LN+F++LLTY E N+ + PNGF Sbjct 258 TSLLKQVWKSKWNTELTHTSFKFKLNSFNVLLTYQLEANQKSQ-----------YLPNGF 306 Query 359 SFLYPANLNETPSSSSSYWTNVTDLTKAATDTENTNLLNDLQKSQEQVNQFVAAITQNHL 418 SFL+P+NL SS SYW N+ D +K T+ ENT LL DLQK Q+QVN+FV I QNH Sbjct 307 SFLFPSNLEGKIDSSKSYWNNLVDFSKRTTNEENTMLLTDLQKKQDQVNRFVGFIGQNHF 366 Query 419 DVSEAALTKKQFGSLSISDFFKAIFKE 445 +S ++ +KQF S +DFFKAIF++ Sbjct 367 TLSANSINEKQFNDASTADFFKAIFQK 393 Lambda K H a alpha 0.309 0.124 0.340 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 53567457 Query= gi|13507973|ref|NP_109922.1| membrane export protein family [Mycoplasma pneumoniae M129] Length=417 Score E Sequences producing significant alignments: (Bits) Value gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 356 3e-121 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 325 2e-107 gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 81.6 2e-18 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 356 bits (913), Expect = 3e-121, Method: Compositional matrix adjust. Identities = 196/422 (46%), Positives = 282/422 (67%), Gaps = 14/422 (3%) Query 1 MQFHAVYQNNDTKANLDFALNISTINFATLQELQNSFDLQGSDLTAGLFYKYSVNKLTS- 59 M F Y+ + NL F L T NF LQELQNSF+ G+DL LF+K +NKL Sbjct 72 MDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSFN--GNDLNTQLFWKPLINKLVDK 129 Query 60 GTNDLTTIAKTALGENIIQKQVSLTQSIIK--PRLEAAKTQYKQDIIAPFAKERQAALAQ 117 NDLT+IAKTA+ +++ ++ S++K +L+ AKT+++++II PF KER+ A A Sbjct 130 NQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPFKKEREKAKAD 189 Query 118 HLKEIEEAKQR--AEQLLKEQQEAEKRRQEEVKNVAETQQFNDSLTSAQKFKEYWLKQGK 175 + E +QR AE+ K+++E +++ +E + + +QFN S +A++FK+YW Q K Sbjct 190 Y-----EEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKDYWKNQKK 244 Query 176 DVTKKVELIQALKSSFFRNQNRTFNFLIAGFRTAI-DWYYNQEKNNTTAKNNAFGKNGIQ 234 DVT K +LI ALK+SF ++N+TF+ LI F A D+Y N +K+ + AF + GIQ Sbjct 245 DVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKAFSEKGIQ 304 Query 235 FPVAGFQGIYMSQWLRDELSGKTDIKLNLKSLSVQNENKNSSINWNKQKRIEIKQVKPFN 294 FP G +G+YMS WLR +L+ TDIKLNL S+ ++N+ N +I+W K IE +Q P+ Sbjct 305 FPRQGLEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENNPTIDW-KNNGIEFRQHYPYK 363 Query 295 YSFEINLKYTGSYNVSLWYLIGAAIGGIPTSWSGTMDMKFIVDGDLDSGIVTKQDYPGSK 354 + FEI++KY G Y ++ + A GIP+SW+G MD+KFIVDGDLD +V DYPGS Sbjct 364 FKFEIDIKYQGGYKLTGLFSWFAPFSGIPSSWNGEMDVKFIVDGDLDYNLVQNTDYPGSL 423 Query 355 FEFTEDKLWFTLHVKQQIKVKEQGFMNLLKGQSLDNLDLRTGTTKPPVVDLASYLHFVIL 414 F+F +++L FTLHVK+QIKV++ FM+LLK Q+L NLDLR G TKPPVVDLASYLH+++L Sbjct 424 FQFKDNQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNGATKPPVVDLASYLHYLVL 483 Query 415 TA 416 + Sbjct 484 NS 485 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 325 bits (834), Expect = 2e-107, Method: Compositional matrix adjust. Identities = 194/444 (44%), Positives = 268/444 (60%), Gaps = 39/444 (9%) Query 1 MQFHAVY-QNNDTKANLDFALNISTINFATLQELQNSFDLQGSDLTAGLFYKYSVNKLT- 58 MQF VY +T NLDF L T+NFA LQ+LQN+F G+DL+ LF+ +VNKLT Sbjct 218 MQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTD 277 Query 59 SGTNDLTTIAKTALGENIIQKQVSLTQSII-----KPRLEAAKTQYKQDIIAPFAKERQA 113 + NDLT IAKT +GE+ Q V+L +S+I +P ++ A +++ ++ PF KER+A Sbjct 278 NAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQA---FEERVLTPFKKEREA 334 Query 114 A---------------LAQHLKEIEEAKQRAEQLLKEQQEAEKRRQEEVKNVAETQQFND 158 A Q + + + + ++ EK R+E + + Sbjct 335 AKKAYEEEQRRLEEERKRQLEELRRREAEEKRKAEEAKRNQEKARRER-------EAYEK 387 Query 159 SLTSAQKFKEYWLKQGKDVTKKVELIQALKSSFFRN--QNRTFNFLIAGFRTAIDWYYNQ 216 S S + FK YWL +GKDVTKK +LI ALK++ +NRTF+ LI GF + ++ Y+N Sbjct 388 SFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGVERYFNA 447 Query 217 EKNNTTAKNNAFGKNGIQFPVA--GFQGIYMSQWLRDELSGKTDIKLNLKSLSVQNENKN 274 KN+ K AFG+ GIQFP A G G+YMS +LR EL+ K LNLK + V+N ++ Sbjct 448 NKNDKELKKLAFGEKGIQFPRADAGVNGLYMSNFLRHELTSKAKFSLNLKDIKVENTVED 507 Query 275 SSINWNKQKRIEIKQVKPFNYSFEINLKYTGSYNVSLWYLIGAAIGGIPTSWSGTMDMKF 334 + + W K I +KQ P+ ++ I +KY G YNV W + A I GIPT WSG M++ F Sbjct 508 TQLYW-KDNGIHLKQANPYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDWSGEMNLTF 566 Query 335 IVDGDLDSGIVTKQDYPGSKFEFTE-DKLWFTLHVKQQIKVKEQGFMNLLKGQSLDNLDL 393 +V+GDL S IV K DYPG+ F+FT+ ++L FTL V++QIKV FM LLK Q+L NL L Sbjct 567 VVNGDL-SEIVDKHDYPGTFFQFTDKNELLFTLAVREQIKVDNNHFMGLLKSQNLHNLQL 625 Query 394 RTGTTKPPVVDLASYLHFVILTAK 417 +G TKPPVVDLASY HFV+LT K Sbjct 626 ASGATKPPVVDLASYFHFVLLTEK 649 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 81.6 bits (200), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 109/452 (24%), Positives = 189/452 (42%), Gaps = 61/452 (13%) Query 10 NDTKANLDFALNISTINFATLQELQNSFDLQGSDLTAGLFYKYSVNKLTSGTNDLTTIAK 69 N + + DF + T NF+ ++ F+ + + L + K +V+KL+ +D T IA Sbjct 220 NKSNVDFDFDFILKTDNFSDIENFNEIFNRKPA-LQFRFYTKINVHKLSFNGSDSTYIAN 278 Query 70 TALGENIIQKQVSLTQSIIKPRLEAAKTQYKQDIIAP-FAKERQAALAQHLKEIEEAKQR 128 L + ++ L +SI LE AK ++ ++ + P + K R+A LA EE ++R Sbjct 279 ILLQDQFNLLEIDLNKSIYALDLENAKERFDKEFVQPLYQKRREAKLAW-----EEEQRR 333 Query 129 AEQL--------------LKEQQEAEKRRQEEVKNVAET----QQFNDSLTSAQKFKEYW 170 + LKE+ E +KR +E N+ + F + +S Q Sbjct 334 IAEEQRRQEEERARILKELKEKAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLG 393 Query 171 LKQGK-DVTKKVELIQALKSSFFRNQNRTFNFLIAGFRTAIDWYYNQEKNNTTAKNNAF- 228 K +V + L +AL+ S+ + TF + G++ + N + AF Sbjct 394 FDPNKYNVQTREGLFKALQISYSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDKAFQ 453 Query 229 -----GKNG-------IQFPVAGFQGIYMSQWLRDELSGKTDIKL----NLKSLSVQNEN 272 G N + P G++GI MS WLR L T L N+++ + + N Sbjct 454 YAFGLGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDAN 513 Query 273 KNSSINWNKQKRIEIKQV---------KPFNYSFEINLKYTGSYNVSLWYLIGAAIGGIP 323 I W ++ + K + + I+ + G W + A G IP Sbjct 514 DKKHI-WISPHTFKLNREYGDGERFKGKAYRFKLSISFELEGHLTAHWWTI--AFRGSIP 570 Query 324 TSWSGTMDMKFIVDGDLDSGIVTKQDYPGSKFEFTED-KLWFTLHVKQQI-KVKEQGFMN 381 SWSG + + DGD+ + ++ T+D KL F H Q++ V + Sbjct 571 GSWSGKLRVTHEFDGDVP---YYRLHTTPPQYRLTDDMKLLFVPHSIQRVTAVGNESING 627 Query 382 LLKGQSLDNLDLRTGTTKPPVVDLASYLHFVI 413 LL+ Q+L NL+ ++ P +DL SY+ + I Sbjct 628 LLRSQNLHNLERQSYEATAP-IDLISYMLYAI 658 Lambda K H a alpha 0.315 0.130 0.368 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 48365368 Query= gi|13507974|ref|NP_109923.1| uracil DNA glycosylase [Mycoplasma pneumoniae M129] Length=240 Score E Sequences producing significant alignments: (Bits) Value gi|12044949|ref|NP_072759.1| uracil DNA glycosylase (ung) [Mycopl... 279 4e-97 >gi|12044949|ref|NP_072759.1| uracil DNA glycosylase (ung) [Mycoplasma genitalium G-37] Length=245 Score = 279 bits (713), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 130/232 (56%), Positives = 165/232 (71%), Gaps = 0/232 (0%) Query 1 MEQLLDQFLSGVLSEWKAFILQEAKQTYFQELLAKLKNVEQELTPKASQVFRPFSFFAPN 60 M+ L + +S VL W+AFI +E K+ YFQ LL KLK ++ + PK +FR FSFF P Sbjct 3 MDDLFQRMVSCVLPSWRAFIDEEVKKPYFQALLEKLKALKATIIPKPELIFRVFSFFKPI 62 Query 61 NTKLIIYGQDPYPNPQHACGLSFASNAPKLPQSLKRMILRLQQEYPELAGQNHWTKQLLE 120 +TK+II+GQDPYP+P ACGL+FASN K P SLKR+ILRL++EYP L ++ W + L Sbjct 63 DTKVIIFGQDPYPSPNDACGLAFASNNSKTPASLKRIILRLEKEYPSLKQESSWQQNFLL 122 Query 121 GWAQQGILLLNGVFTTNAFQTNAHRNWGWEQFNCHLLDFLLSQKLYVLLVFLGKQTENFV 180 WA+QG+LLLNG+ TT F NAH+NWGWE+FNC+LL FL +Q + LLVFLG QT+NFV Sbjct 123 NWAEQGVLLLNGILTTTVFIRNAHKNWGWEEFNCNLLTFLKNQNIKPLLVFLGVQTKNFV 182 Query 181 LKKIGGASQFASLSYPHPSPLTGRKFFDHPDALFKQINQWLKHHNHTPIDWT 232 +K IG F LSYPHPSPL+G F +P+ LFK IN WLK HN I+W Sbjct 183 VKSIGNVDGFEHLSYPHPSPLSGNLFLTNPNDLFKTINNWLKQHNQKIINWA 234 Lambda K H a alpha 0.322 0.136 0.432 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24598924 Query= gi|13507975|ref|NP_109924.1| Glu-tRNA amidotransferase subunit C AND unknown TM contating N terminal domain; bidomainal [Mycoplasma pneumoniae M129] Length=479 Score E Sequences producing significant alignments: (Bits) Value gi|12044950|ref|NP_072760.1| Glu-tRNA amidotransferase subunit ga... 687 0.0 >gi|12044950|ref|NP_072760.1| Glu-tRNA amidotransferase subunit gatC-related protein [Mycoplasma genitalium G-37] Length=477 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/468 (72%), Positives = 407/468 (87%), Gaps = 0/468 (0%) Query 12 TSDISTSGFIYFAVVFVAIMGYLLFKNLLFLFFFKRYPKNTPKIGVGNITTIAMIIAVAV 71 TSDISTSGFIYFAVVF+ I+ YL FKN+LFLFFFKRYPKNTPKIGV NITTIAMIIAVAV Sbjct 10 TSDISTSGFIYFAVVFLIIIVYLFFKNILFLFFFKRYPKNTPKIGVSNITTIAMIIAVAV 69 Query 72 SIVLVLMALAGGLAAALFRGYPGFRVTLELILVKISGLLFGPIVGIFSAATIDFLTVIFS 131 S+VLVLMALAGGL AALFRGYPGFRVTLELILVKISGLLFGPI+GIFSAATIDFLTVIFS Sbjct 70 SVVLVLMALAGGLTAALFRGYPGFRVTLELILVKISGLLFGPIIGIFSAATIDFLTVIFS 129 Query 132 GGVFNVGYVLGAILTGMIAGILREVLISTALLHNRNLSDFAYLVLSIGMVIAAFLITQFF 191 GGVFN+GYVLGAILTGMIAGILREVLIST+ L+N+ LSDFAYLVLS+GMV A+FL+TQFF Sbjct 130 GGVFNIGYVLGAILTGMIAGILREVLISTSFLNNKTLSDFAYLVLSVGMVFASFLVTQFF 189 Query 192 VLGISNNLKEIKGDEEFRLKFNAPSIVFELSLTQYANILLYFTIAIVIAMLVLYIVWLVK 251 V+ ++ NL + +++ L+FNA + F +SL +Y I+ YF + ++I M+VLY VW++K Sbjct 190 VISVTQNLSAFQSNDQIVLRFNASPLNFSISLQRYVQIIFYFAMVVIITMVVLYFVWIIK 249 Query 252 QRHLSFEHSRFFYRSYKHANHQFTLFVLTKENWFYLILNVITLASTSLLMINIAFIPIFD 311 Q+H ++ +S+FF+R YKHANHQFTLFVLTKENWFYLILNVITLA+TSLLMINIAFIPIFD Sbjct 250 QKHFNYAYSKFFFRRYKHANHQFTLFVLTKENWFYLILNVITLATTSLLMINIAFIPIFD 309 Query 312 TQTTGQTYEFWLLARLLFAPVIFLLDIIVIYPILLLLTPLMLKGFKTAVSKNQRKTLKQS 371 TQTTGQTY+FWLL RLLFAP+IFLLDIIVIYPILLLLTP+MLKGFKT S+ Q K +K+S Sbjct 310 TQTTGQTYDFWLLVRLLFAPLIFLLDIIVIYPILLLLTPIMLKGFKTVASETQTKGIKKS 369 Query 372 FTDLQSVVLPIINKRKHQQLRQEELKRLARATHFDLTEGEMEKLLVEFKTITQSFDRVMN 431 F+D+QS+++P + K QQL ++E+++LA+ DL++ E++ L+ EFK IT+SF++V Sbjct 370 FSDMQSLIMPNVISHKKQQLIRKEMQQLAKTIRIDLSDKEVDALVEEFKEITKSFNKVTK 429 Query 432 IDTTSVEPMYAPFNTSPTPLRKDKVIVEKHPEKLLANCKEMSVGFVKV 479 IDTT+V+PMYAPF SPTPLRKDK +V+KH ++LL NC E+ GFVKV Sbjct 430 IDTTNVQPMYAPFEFSPTPLRKDKPVVDKHAKQLLNNCCEVKTGFVKV 477 Lambda K H a alpha 0.329 0.143 0.412 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56745765 Query= gi|13507976|ref|NP_109925.1| Glu-tRNA amidotransferase, subunit A (gatA) [Mycoplasma pneumoniae M129] Length=478 Score E Sequences producing significant alignments: (Bits) Value gi|12044951|ref|NP_072761.1| Glu-tRNA amidotransferase, subunit A... 680 0.0 >gi|12044951|ref|NP_072761.1| Glu-tRNA amidotransferase, subunit A [Mycoplasma genitalium G-37] Length=477 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/477 (68%), Positives = 390/477 (82%), Gaps = 0/477 (0%) Query 1 MKSQILKLQQTLTKKPASINPLLQQIDGAINEHWSSNFLLKNTVEWAQAQAPKNRSKSPL 60 M+S IL L+ L KKP++IN +L I+ I + SSNFLLKNTVE + K+ K L Sbjct 1 MRSNILSLRAILDKKPSAINDVLTSINAKIELNKSSNFLLKNTVEIYSKKINKSDEKILL 60 Query 61 NNIPFVLKDNIATKGIVTTGGSRFLEDYIPPFSATVFELLNNSGALLVGKANLDEFGLGG 120 NNIP+VLKDNIATK IVTTGGS FL++Y+PPFSATVFELL +GALLVGKAN+DEFGLGG Sbjct 61 NNIPYVLKDNIATKDIVTTGGSLFLKNYLPPFSATVFELLEMNGALLVGKANMDEFGLGG 120 Query 121 TGLHSGFGFVHHPWNETLIPGGSSSGSAYAVARGIVPFSIGTDTGDSVRRPASICNIVGF 180 TG +S FG VHHP N +LI GGSSSGSAYAVA+ IVPFSI TDTGDS+RRPASICN+VGF Sbjct 121 TGSYSAFGVVHHPENSSLIAGGSSSGSAYAVAKDIVPFSIATDTGDSIRRPASICNVVGF 180 Query 181 KPTYGLISRNGVYPYAPSLDHVGIFARYVYDVALVSDEIIKHDKADFSAQKSPDAGKFTR 240 KPTYGLISRNGV+PYAPS+DHVGIFA++V D+A+VSD +IKHDK DFS+QKSPD +F Sbjct 181 KPTYGLISRNGVFPYAPSMDHVGIFAKFVSDIAIVSDVVIKHDKTDFSSQKSPDENQFFN 240 Query 241 SLKESFNKQIKIGYLKPLEEWFDIELSKKWNSLKERITLEGCELIPFHFPLELLEVIDPV 300 L F + I+ GYLKPLE+ F+ L KKWN+LK+ + + +LIP F +ELL+VID + Sbjct 241 ELAIPFTRSIRFGYLKPLEKLFNKHLQKKWNNLKKTLEQKNYQLIPLDFDVELLKVIDSI 300 Query 301 YKLISYSEAVSCYSNLTGIVFGQKLFEPNQASDFSKTITANRDRFFGEQLKRRFIIGAFG 360 YK+ISYSEAVSCYSNLTGIVFGQK+FEPN S+F +TIT NRD+F G+QLKRRF+IGAF Sbjct 301 YKIISYSEAVSCYSNLTGIVFGQKVFEPNSPSNFDQTITRNRDQFLGKQLKRRFVIGAFA 360 Query 361 TDKNNFTKYFEKAQKIRRVMVDAYLNLFKEADFIVSPSASGFTKTIAAVQKGESFTNLVD 420 TD+ NF KYFEKAQKIRRV+VD +LNLF + DF++SPSAS F TI +Q + +TN++D Sbjct 361 TDEKNFEKYFEKAQKIRRVLVDNFLNLFSDVDFVLSPSASCFASTIEDIQANKPYTNIID 420 Query 421 DFLQLANFAGNPSITIPWLVKQKDQTIGLSVNANCFHDKQLLQVAAWLEELFQIEHD 477 DFLQLANFAG+PSITIPWLV+ KDQTIGLS++ANCF DK+LLQ+A W E+LF + HD Sbjct 421 DFLQLANFAGSPSITIPWLVQTKDQTIGLSISANCFEDKKLLQIAYWFEQLFDLNHD 477 Lambda K H a alpha 0.319 0.136 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56605652 Query= gi|13507977|ref|NP_109926.1| Glu-tRNA(Gln) amidotransferase, subunit B (gatB) [Mycoplasma pneumoniae M129] Length=478 Score E Sequences producing significant alignments: (Bits) Value gi|12044952|ref|NP_072762.1| Glu-tRNA amidotransferase, subunit B... 691 0.0 >gi|12044952|ref|NP_072762.1| Glu-tRNA amidotransferase, subunit B (gatB) [Mycoplasma genitalium G-37] Length=477 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/477 (73%), Positives = 397/477 (83%), Gaps = 0/477 (0%) Query 2 MINFEAIIGIEVHVVLNTATKMFSPAPNQAQNATPNQFINAIDLGLPGTMPQVNEQAVQK 61 MINFEAIIGIEVHVVLNTA+KMFS APN+ N N FI+ IDLGLPGT+PQVNE AV K Sbjct 1 MINFEAIIGIEVHVVLNTASKMFSKAPNRVDNQKINHFIDPIDLGLPGTLPQVNELAVYK 60 Query 62 ALILADALNMQRVQPVLVFDRKHYFYQDLPKGFQITQQNFPIAQNGYVEIVENNKAQRII 121 AL+LADAL M+ V LVFDRKHYFYQDLPKGFQITQQN+P A+NG V I + + I Sbjct 61 ALLLADALKMKTVTNKLVFDRKHYFYQDLPKGFQITQQNYPFAKNGVVTINVDAIEKPIY 120 Query 122 IERFHLEEDTAKQHFVDGQILLDFNRCGAPLIEVVTAPVIKSAKQSKAYLQKLRQILIVN 181 I+RFHLEEDTAKQHF QILLDFNRCGAPLIEVVT PVI +AK++KAYLQKLRQILIVN Sbjct 121 IDRFHLEEDTAKQHFNHDQILLDFNRCGAPLIEVVTLPVINTAKEAKAYLQKLRQILIVN 180 Query 182 NISNAKLEDGSMRSDCNVSVRLKGQTAFGTKVEIKNINSLNNVEKAIDLEIARQVKALIK 241 NISNAKLEDGSMRSDCNVSVRLKGQ GTK+EIKNINSLNNVEKAIDLEI RQVKALI Sbjct 181 NISNAKLEDGSMRSDCNVSVRLKGQRQLGTKIEIKNINSLNNVEKAIDLEINRQVKALIN 240 Query 242 GEPVQQVTLTYDDKTNTNVFMRKKDNSVDYRYFIEPNIMSSNIDELLQKPNKAFNLTEFF 301 GE + Q TL++DDKTN NVFMRKKDN++DYRYFIEPNIM+SNID+LL + AF L +F Sbjct 241 GETLSQATLSFDDKTNNNVFMRKKDNTIDYRYFIEPNIMTSNIDDLLLEKPVAFQLEQFQ 300 Query 302 TKLKEAGVNEQLNQLVVDDLTLFNAYTKINSVINSPQDTIRWLCIELMGQLNKLQKPLKD 361 +L ++ VN QL QLVVDD T+F+A+ INSVI +PQ+TIRWLCIEL+GQLNK L Sbjct 301 KELIDSNVNPQLVQLVVDDATIFSAFQTINSVIKNPQETIRWLCIELIGQLNKTNSSLTA 360 Query 362 KTIDHLIILIQMVQKGTVNQKQAKQLIELMLDNGQDPQSLAKLHNLEQITDEKQLTQIIQ 421 I LI LI+M++ VNQKQAKQLI LM++ +DP+SLAKLHNLEQITD K+L +II+ Sbjct 361 NLIQDLITLIEMLKAAKVNQKQAKQLITLMIETKKDPKSLAKLHNLEQITDPKELQKIIK 420 Query 422 QIFKENEGEILKNLDRVERIQKLIIGQVMQRTHNRANPQQVFIIVEKLLHDFSERAS 478 +IF+ENE EILKN+DR+ERIQKLIIGQVM +T+NRANPQQVFIIVE +LH+ ER S Sbjct 421 KIFQENEKEILKNIDRIERIQKLIIGQVMHKTNNRANPQQVFIIVENMLHEVRERDS 477 Lambda K H a alpha 0.318 0.134 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56605652 Query= gi|13507978|ref|NP_109927.1| hypothetical protein MPN239 [Mycoplasma pneumoniae M129] Length=222 Score E Sequences producing significant alignments: (Bits) Value gi|12044953|ref|NP_072763.1| hypothetical protein MG101 [Mycoplas... 289 6e-102 >gi|12044953|ref|NP_072763.1| hypothetical protein MG101 [Mycoplasma genitalium G-37] Length=222 Score = 289 bits (740), Expect = 6e-102, Method: Compositional matrix adjust. Identities = 138/219 (63%), Positives = 173/219 (79%), Gaps = 0/219 (0%) Query 4 AKEQAKKGQIIYRYILLKIQSFKWPAGTRIFSERQLEIRFASSRSLIRTILNTLLGKDLI 63 KE AKK QIIYRYI+LKIQSF+WPA TRIFSERQLEIRF SSRS IR++L TLL K++I Sbjct 4 GKEIAKKNQIIYRYIILKIQSFEWPANTRIFSERQLEIRFNSSRSQIRSVLATLLNKNII 63 Query 64 RHTKGNAGYFVAKNAGFSFFHKTQDNKLPKWAKLSTLMKNHLREVDRDVFSSIDSGVDFG 123 R+TK GYFV K+ GFSFFHKTQDN K+AKLSTL+K L + D VF++IDS V Sbjct 64 RYTKNTPGYFVCKDVGFSFFHKTQDNLKVKYAKLSTLIKKLLSQDDASVFANIDSTVHLD 123 Query 124 NFKGLEAKLFDENKKNFLNLSFFGKDDVLQIFSEQNLQEQFFKDFAYNGIVVERKSSLIC 183 FKG+EAK FDENKK+FLN+ FF KDD+L I E NLQ+QFF++FAYNGI +E++ + Sbjct 124 KFKGIEAKFFDENKKHFLNVCFFAKDDILNILDENNLQQQFFREFAYNGIAIEKRHCVTS 183 Query 184 VDDETKNLLIYDLFYDDNNKFIVAMRSEYLNPRIKIINA 222 VD E+ L++YD++YDDN+ F+VA +S +LNP +K+INA Sbjct 184 VDKESGCLVMYDMYYDDNDNFVVASKSNFLNPELKVINA 222 Lambda K H a alpha 0.323 0.139 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22242655 Query= gi|13507979|ref|NP_109928.1| thioredoxin reductase [Mycoplasma pneumoniae M129] Length=315 Score E Sequences producing significant alignments: (Bits) Value gi|12044954|ref|NP_072764.1| thioredoxin reductase (trxB) [Mycopl... 447 2e-161 >gi|12044954|ref|NP_072764.1| thioredoxin reductase (trxB) [Mycoplasma genitalium G-37] Length=315 Score = 447 bits (1150), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 219/313 (70%), Positives = 261/313 (83%), Gaps = 0/313 (0%) Query 1 MLKVKSDFLTKDQVIYDVAIVGAGPAGIAAGIYGKRANLNLAIIEGSTPGGKVVKTNIVE 60 MLKV +DFLTKDQVIYD+ IVGAGPAGIA+ IYGKRANLNLAIIEG+TPGGK+VKTNIVE Sbjct 1 MLKVNADFLTKDQVIYDLVIVGAGPAGIASAIYGKRANLNLAIIEGNTPGGKIVKTNIVE 60 Query 61 NYPGYKSITGPDLGLEMYNHLIDLEPTFFYANLIKLDKAADTFILYLDDKTVVFAKTVIY 120 NYPG+K+ITGP+LGLEMYNHL+ EP FY NLIK+D DTFILYLD+KT VF+KTVIY Sbjct 61 NYPGFKTITGPELGLEMYNHLLAFEPVVFYNNLIKIDHLNDTFILYLDNKTTVFSKTVIY 120 Query 121 ATGMLERKLGVAKEDHFYGKGISYCAICDGSLYKDQVVGVVGGGNSAIQEALYLASMAKT 180 ATGM ERKLG+ KED+FYGKGISYCAICD +LYK + VGVVGGGNSAIQEA+YL+S+AKT Sbjct 121 ATGMEERKLGIEKEDYFYGKGISYCAICDAALYKGKTVGVVGGGNSAIQEAIYLSSIAKT 180 Query 181 VHLIHRREGFRADETALNKLRNLPNVVFHLNYTVKELLGNNTLNGIVLQNTLDHSTKQID 240 VHLIHRRE FR+D + KL+ + NVVFHLN TVK+L+G L + L +T+D S +I Sbjct 181 VHLIHRREVFRSDALLVEKLKKISNVVFHLNATVKQLIGQEKLQTVKLASTVDKSESEIA 240 Query 241 LNCVFPYIGFESITKPVEHLNLKLDPQGFLITNEQMETSLKGLFAAGDCRSKHFRQIGTA 300 ++C+FPYIGFES KPV L L LD GF++ +E M+T++KG + AGDCRSK FRQI TA Sbjct 241 IDCLFPYIGFESNNKPVLDLKLNLDQNGFILGDENMQTNIKGFYVAGDCRSKSFRQIATA 300 Query 301 INDGIIAVLTIRD 313 I+DG+ AVL +RD Sbjct 301 ISDGVTAVLKVRD 313 Lambda K H a alpha 0.321 0.140 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 34802005 Query= gi|13507980|ref|NP_109929.1| hypothetical protein MPN241 [Mycoplasma pneumoniae M129] Length=280 Score E Sequences producing significant alignments: (Bits) Value gi|12044955|ref|NP_072765.1| hypothetical protein MG103 [Mycoplas... 321 8e-113 >gi|12044955|ref|NP_072765.1| hypothetical protein MG103 [Mycoplasma genitalium G-37] Length=280 Score = 321 bits (823), Expect = 8e-113, Method: Compositional matrix adjust. Identities = 158/280 (56%), Positives = 206/280 (74%), Gaps = 1/280 (0%) Query 1 MSFSVQIKHELATNPLIKTEWSSFLAGYFQNGLKLLATGQWSFKTSTATLKALFSNALQF 60 M+FS QIK EL N LI W+ FLAG+FQN LKLL WSFK + LK F L+F Sbjct 1 MTFSTQIKAELVQNKLIDKHWNVFLAGFFQNNLKLLYNRNWSFKVQSEALKEQFVQNLKF 60 Query 61 SFQIHETSTHCEFSFRASQTEVDQLLAFDATQSDLPLQKAYVIGAFLSGGSVSDLLHSSN 120 F+ + + F F A ++ LL D T S+L +++ Y+I AFLSGGSVSDL++S+N Sbjct 61 DFKTKASKKYFLFEFNADINVINTLLKLDVTTSELVVKQVYLIAAFLSGGSVSDLINSNN 120 Query 121 FHLQISTNNELQIKQLMKLFHPFKQTTKRHQLLVYVKSYQAICDFFKLVEAFDGYLAFEE 180 FHLQIS+NNE QI+QL+KLF FK+T K++QL+VY+KSY+ IC+F KL++AFDGYLAFE Sbjct 121 FHLQISSNNEFQIQQLLKLFSFFKKTVKQNQLVVYLKSYEKICNFLKLIQAFDGYLAFEN 180 Query 181 NQLQKNFALEQVRKSNLEIANLMRTLKTSTSTAE-QLKILINSADFKKQSLNFQRFCLVK 239 QL+K+F L Q+RKSNLE+ANLM+T++++ T + QLK I S+ F K+ LNFQR+CL+K Sbjct 181 KQLEKSFTLNQLRKSNLEVANLMKTIRSNNQTNQLQLKSFIKSSSFAKRPLNFQRYCLIK 240 Query 240 LDHPDWSLEQIAQFFERKYKVQITRSGIQHLNAKLKKLNQ 279 DHPDWSLEQIA FF KY ++I+RSGIQH + LKKL Q Sbjct 241 SDHPDWSLEQIANFFFTKYNIKISRSGIQHFSVNLKKLCQ 280 Lambda K H a alpha 0.321 0.131 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30074463 Query= gi|13507981|ref|NP_109930.1| hypothetical protein MPN242 [Mycoplasma pneumoniae M129] Length=76 ***** No hits found ***** Lambda K H a alpha 0.338 0.153 0.430 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4442249 Query= gi|13507982|ref|NP_109931.1| 3'-5' exoribonuclease, RNase R [Mycoplasma pneumoniae M129] Length=726 Score E Sequences producing significant alignments: (Bits) Value gi|12044956|ref|NP_072766.1| virulence-associated protein homolog... 1164 0.0 >gi|12044956|ref|NP_072766.1| virulence-associated protein homolog (vacB) [Mycoplasma genitalium G-37] Length=725 Score = 1164 bits (3010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/726 (75%), Positives = 640/726 (88%), Gaps = 1/726 (0%) Query 1 MKVLTDLQKRIFAIVKKENGKPIPPGIVVRMMENQAGFPGKQQVYRAIDDLLEWHIFRKS 60 MKVLT+LQK+IF IVKKENGKPIPPGIVVRMMEN FPGK +YRAIDDLL+W I RK+ Sbjct 1 MKVLTELQKQIFTIVKKENGKPIPPGIVVRMMENSPNFPGKHLIYRAIDDLLDWAILRKA 60 Query 61 GGATNQLLINYELADPVLDQKFQGILNLGNKNTGFVRPLDDDKTVYYIHFSNLAGALDGD 120 GG TNQLL+NYE A+P+LD+K QGIL LGNKN+GF+R LDDDKTVYY+H+SNL GALDGD Sbjct 61 GGVTNQLLVNYEPAEPLLDKKLQGILTLGNKNSGFIRSLDDDKTVYYVHYSNLTGALDGD 120 Query 121 LVEFCPLDKPQVGDKFDAAVLKIVKRSRVLYAGNFLIEYSDFGQEFRIVADNPRFYLTPI 180 LVEFC LDKPQ GDKFDAAV+ I+KR+R+LYAGNFL++ ++F E++IVADNPRFYLT I Sbjct 121 LVEFCKLDKPQFGDKFDAAVITILKRARILYAGNFLVDQNEFALEYKIVADNPRFYLTMI 180 Query 181 VNKASVPAELESNTKVAFQIDEYDPANNLCKVSIQQILGNNDEPLINLKAIMLDHSIVFE 240 VN S+P L SNTK+AFQIDEYDP NNLCKVS+QQ+LGNND+PLIN+KAIMLD+SIVFE Sbjct 181 VNPDSIPNNLASNTKIAFQIDEYDPDNNLCKVSVQQVLGNNDDPLINIKAIMLDNSIVFE 240 Query 241 DNDVVEQQAAKLQFDEKEQSKPYRKDLTELAFVTIDPATSKDLDDAIYVKRTDKGFVLYV 300 NDVVEQ A KL FD +EQ K YR+DLT+LAFVT+DP TSKDLDDAIYVK GFVLYV Sbjct 241 TNDVVEQHANKLSFDTEEQHKAYRQDLTDLAFVTVDPTTSKDLDDAIYVKTIPTGFVLYV 300 Query 301 AIADVAYYVQRNSELDIEARHKTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCE 360 AIADVA+YV RNSE+DIEA+HKTSSIYLPG+YVVPMLPE+LSN+LCSLNP +KRYVVVCE Sbjct 301 AIADVAHYVNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQKRYVVVCE 360 Query 361 LNFDHEARLNFSEVYPATIVSQRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSEL 420 ++FD++ R+ +++YPATI+S+ RF+Y +VN WL + L + TV+ SLKA FTLS+L Sbjct 361 ISFDNQGRIKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDE-TVINSLKAAFTLSDL 419 Query 421 IAEQRKKKGTIDLSHSETEVVVDQNYYPIEIRFLTHGKAETMIENLMVVANEAVAWTLTN 480 I QR+K+GTIDLSH ETE+VVD++Y+PI+I FL H KAETMIENLMVVANE VAW LTN Sbjct 420 IQAQRQKRGTIDLSHKETEIVVDEHYFPIKINFLVHDKAETMIENLMVVANETVAWVLTN 479 Query 481 HKVHLPYRVHPRPSKKKLQMLLENIVELKITQPNFVLDTVTSTQIAAWLKENKDNPSYDI 540 +K+ LPYRVHPRPSKKKLQ L+E + EL IT+P F LDTVTS+QIA+WL ENKDNPSY+I Sbjct 480 NKIALPYRVHPRPSKKKLQSLIETVGELNITKPQFNLDTVTSSQIASWLNENKDNPSYEI 539 Query 541 FVILLLRTLGKAFYIVNPLIHFSIGSHHYTHFTSPIRRYADLTVHRLLWMNLFTPERFTD 600 FVILLLRTLGKAFY VNPL+HFSIGS+HYTHFTSPIRRY DLT+HRLLWM+LFTP++FTD Sbjct 540 FVILLLRTLGKAFYSVNPLMHFSIGSNHYTHFTSPIRRYIDLTIHRLLWMHLFTPDQFTD 599 Query 601 TEREQLNAELEQICETINDTEIKINGCERTANDYLTTLYLSKQVGQTFHGFISAITSFGI 660 ER+QL ELE+I +T+NDTEIKI CER ANDYLTTL LSKQ+G+TF GFISAITSFGI Sbjct 600 NERDQLKQELEKIADTVNDTEIKIINCERNANDYLTTLLLSKQIGKTFSGFISAITSFGI 659 Query 661 FMRMDENNFDGLIKITSIPEDFFVFEKDRMVLRGKRTNKVFRIGDRLTAKLTEIDTVQKR 720 FMRMDENNFDGLIKIT+IP+DFF+FEK++MVL+G++TNKV++IGDRL AKL+EID +QKR Sbjct 660 FMRMDENNFDGLIKITTIPDDFFIFEKEKMVLKGRKTNKVYKIGDRLEAKLSEIDFIQKR 719 Query 721 AILTLV 726 AILTL+ Sbjct 720 AILTLI 725 Lambda K H a alpha 0.320 0.137 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 89990989 Query= gi|13507983|ref|NP_109932.1| hypothetical protein MPN244 [Mycoplasma pneumoniae M129] Length=202 Score E Sequences producing significant alignments: (Bits) Value gi|12044957|ref|NP_072767.1| hypothetical protein MG105 [Mycoplas... 298 3e-106 >gi|12044957|ref|NP_072767.1| hypothetical protein MG105 [Mycoplasma genitalium G-37] Length=200 Score = 298 bits (764), Expect = 3e-106, Method: Compositional matrix adjust. Identities = 143/177 (81%), Positives = 162/177 (92%), Gaps = 1/177 (1%) Query 25 FVLLNKRTRSFVIRTFTGLF-RSKHTTSQKNFYDNLTSTLLRLSTDKIGAIIAIENQDSL 83 F LNKR R++V+RT+T +F +SK +KNF+DNLTSTLLRLS DKIGAIIAIE +DSL Sbjct 24 FAFLNKRVRNYVVRTWTSVFSKSKQNLDKKNFFDNLTSTLLRLSVDKIGAIIAIEKRDSL 83 Query 84 ESYVNIGYRVTSDFSPELLVTIFYNKQSPLHDGAVIVRDYQIVSVSSYFPMTRQLIDVSY 143 E Y+NIGYRV+SDFSPELLVTIFYNK SPLHDGAVIVRDY+I+SVSSYFPMTRQLIDVSY Sbjct 84 EPYINIGYRVSSDFSPELLVTIFYNKSSPLHDGAVIVRDYKIISVSSYFPMTRQLIDVSY 143 Query 144 GSRHRSALGLTEKCDAIVFIVSETTGKISVAVRGVIKTLSSNSDRLQDQIIHYLTVK 200 GSRHRSALGL+EK DA+VFIVSETTGKISVA++GVIKTLSSNSDRLQD+IIHYL+ K Sbjct 144 GSRHRSALGLSEKSDAVVFIVSETTGKISVALKGVIKTLSSNSDRLQDEIIHYLSSK 200 Lambda K H a alpha 0.324 0.138 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 19581960 Query= gi|13507984|ref|NP_109933.1| polypeptide deformylase, probably excreted form [Mycoplasma pneumoniae M129] Length=216 Score E Sequences producing significant alignments: (Bits) Value gi|12044958|ref|NP_072768.1| polypeptide deformylase (def) [Mycop... 308 3e-109 >gi|12044958|ref|NP_072768.1| polypeptide deformylase (def) [Mycoplasma genitalium G-37] Length=226 Score = 308 bits (788), Expect = 3e-109, Method: Compositional matrix adjust. Identities = 148/215 (69%), Positives = 169/215 (79%), Gaps = 0/215 (0%) Query 1 MTKILPVSTISIFRIILILPQINMELLPTKAWLVLDDVKEINEPTKPVQFPLDQASLDCI 60 MTKILP SI RIIL L ++M PTK WLV DD IN+PT+ V FP+D+ CI Sbjct 11 MTKILPWLFTSIVRIILTLLFLSMTFQPTKTWLVFDDNALINKPTEAVNFPIDEQIETCI 70 Query 61 AKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHLMDGGVEHKCLLINPKIIN 120 KM+AYVDASY+G A++Y IIPGIGIAANQIGYWKQ+FYIHL D E KCLLINPKII+ Sbjct 71 KKMIAYVDASYDGKAQEYDIIPGIGIAANQIGYWKQLFYIHLNDLNKEKKCLLINPKIID 130 Query 121 LSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQKEITITATGLFGMCLQHEF 180 S NK+FL+SGEGCLSV K H+GYVIR EWITI G+DW ++KEITI ATGLFGMCLQHEF Sbjct 131 QSENKAFLESGEGCLSVKKQHKGYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEF 190 Query 181 DHLQGRFYYHRINPLNPLFTNKEWKVINPALPSDS 215 DHLQGRF+Y RINPLNP F EWKVINP L + + Sbjct 191 DHLQGRFFYQRINPLNPWFKKPEWKVINPTLKTSN 225 Lambda K H a alpha 0.323 0.140 0.442 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21381649 Query= gi|13507985|ref|NP_109934.1| membrane-associated guanylate kinase homologue [Mycoplasma pneumoniae M129] Length=239 Score E Sequences producing significant alignments: (Bits) Value gi|12044959|ref|NP_072769.1| guanylate kinase (gmk) [Mycoplasma g... 290 2e-102 >gi|12044959|ref|NP_072769.1| guanylate kinase (gmk) [Mycoplasma genitalium G-37] Length=189 Score = 290 bits (742), Expect = 2e-102, Method: Compositional matrix adjust. Identities = 141/188 (75%), Positives = 163/188 (87%), Gaps = 0/188 (0%) Query 51 MVDTGRIFVITGPSGVGKSSLVRCLIDHFKDKLRYSISATTRKMRNSETEGVDYFFKDKA 110 M + GRIFVITGPSGVGKS+LV+ L+DHFK++L YSISATTRK R SE EG+DYFFKDK Sbjct 1 MNNQGRIFVITGPSGVGKSTLVKALLDHFKEQLFYSISATTRKKRISEKEGIDYFFKDKD 60 Query 111 EFEKLIAADAFVEWAMYNDNYYGTLKSQAEQIIHNGGNLVLEIEYQGALQVKQKYPNDVV 170 EFE LI DAF+EWA YN++YYGTLKSQAEQ I +G NL+LEIEYQGALQVK KYP++VV Sbjct 61 EFENLIKQDAFIEWACYNNHYYGTLKSQAEQAIKSGINLMLEIEYQGALQVKSKYPHNVV 120 Query 171 LIFIKPPSMEELLVRLKKRNDEDAITIQNRLKQAEKECQQIGHFKYVVTNNEFDKTLAEL 230 LIFIKPPSM+ELL RLKKRNDED TI+ RL+QA+ E QQI +FKYVVTN EFDKTL EL Sbjct 121 LIFIKPPSMQELLKRLKKRNDEDETTIKKRLEQAKIEFQQIDNFKYVVTNKEFDKTLNEL 180 Query 231 QAILLAEF 238 ++ILL+EF Sbjct 181 KSILLSEF 188 Lambda K H a alpha 0.318 0.134 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24455907 Query= gi|13507986|ref|NP_109935.1| protein phoshatase 2C homolog; similar to Swiss-Prot Accession Number P35182, from S. cerevisiae [Mycoplasma pneumoniae M129] Length=259 Score E Sequences producing significant alignments: (Bits) Value gi|12044960|ref|NP_072770.1| protein phosphatase, putative [Mycop... 285 4e-99 >gi|12044960|ref|NP_072770.1| protein phosphatase, putative [Mycoplasma genitalium G-37] Length=260 Score = 285 bits (729), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 140/258 (54%), Positives = 189/258 (73%), Gaps = 1/258 (0%) Query 1 MDSTNQNLFASLSKKGPVRKENQDFSVVTFNRFGQLMSLVCDGLGGYKGGKMASALVSEV 60 M + N + F LSKKGPVRKENQDF +FN+ L+ +VCDGLGGYKGGK+AS LV ++ Sbjct 1 MQAANDHFFTGLSKKGPVRKENQDFYGFSFNQ-NNLLIVVCDGLGGYKGGKIASNLVGKL 59 Query 61 FTKSFTVFDFHSQTERAVKQWFEITLIEARRTLEQYFQTIKRNQVQFARMATTLVLSIIS 120 F F F+F+ E VK+WFE TLI+AR LE FQT+ Q+QFARMA+TLVL I++ Sbjct 60 FLSLFEGFEFNQWDETTVKKWFENTLIQARFQLENCFQTVYEAQIQFARMASTLVLGILT 119 Query 121 KQNIWTFWVGDSRAYLINSYQSLQITEDHNLYNQLLQMHATPDVIASYKDKLLALTATVS 180 K +I+ FW+GDSRAYL+ Q+ +T+DHNLYNQL+ M+A ++ SY ++LLALT T+S Sbjct 120 KSDIYIFWIGDSRAYLLFENQAKLVTKDHNLYNQLVAMNADEKLLLSYSNQLLALTNTIS 179 Query 181 KDQERQLKYSFRCDVVNAWDFLLLCSDGLYNFLDPNCFYEVITSAPNLKKAVTQLAKLSL 240 K+ +R L Y F + +FLLLCSDGLYNF++ F+E+IT++ NLK+AV L + S+ Sbjct 180 KETKRPLVYGFYNTKIEQQEFLLLCSDGLYNFVEKELFFEIITNSKNLKQAVFNLYRKSI 239 Query 241 DNASNDNITLNLINLKQW 258 +NASNDNIT L+NL++W Sbjct 240 ENASNDNITAALVNLQKW 257 Lambda K H a alpha 0.321 0.133 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27081270 Query= gi|13507987|ref|NP_109936.1| Ser/Thr/Tyr protein kinase [Mycoplasma pneumoniae M129] Length=389 Score E Sequences producing significant alignments: (Bits) Value gi|12044961|ref|NP_072771.1| serine/threonine protein kinase, put... 536 0.0 >gi|12044961|ref|NP_072771.1| serine/threonine protein kinase, putative [Mycoplasma genitalium G-37] Length=362 Score = 536 bits (1380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 249/357 (70%), Positives = 300/357 (84%), Gaps = 0/357 (0%) Query 26 MNSYLFLASNLHVQEFGPLQKRQFTRLVLKVVQRTDKINDNNWKKFLDGTITTTRVSHKN 85 M+SYLFLA NL+++ +GP+QK+Q+ LVLKVVQ+ KIN+NNWKKFLD +TTTRV H N Sbjct 1 MDSYLFLAKNLNLKNYGPVQKKQYGHLVLKVVQKNPKINENNWKKFLDEMVTTTRVHHSN 60 Query 86 LVQTFDVVSPRLSVLSENQVIVLEDTVMIVMEYVDGPSLREMLNQKGYFSVQEVVYYFTK 145 LV++FDVV+P L ++ N+ I L VMI MEYVDGPSLR++LN+KGYFSV EVVYYFTK Sbjct 61 LVKSFDVVNPFLKIVRGNKTIALNQIVMIAMEYVDGPSLRQLLNRKGYFSVSEVVYYFTK 120 Query 146 LVKVINYLHSFEHQIIHRDLKPENILFTSNLTDIKLLDFGIASAVIRNAEKTEVLTDENS 205 +VK I+YLHSF+HQIIHRDLKPENILFTS+LTDIKLLDFGIAS V++ AEKTEVLTDENS Sbjct 121 IVKAIDYLHSFKHQIIHRDLKPENILFTSDLTDIKLLDFGIASTVVKVAEKTEVLTDENS 180 Query 206 LFGTVSYMTPEVLESTVNKEGKRIRKPPTVQYDIYSLGVILFEMLVGRVPFNKSIDPKKE 265 LFGTVSYM P+VLESTVNK GK++RKPP QYDIYSLG+ILFEMLVGRVPFNKSI+P KE Sbjct 181 LFGTVSYMIPDVLESTVNKAGKKVRKPPNAQYDIYSLGIILFEMLVGRVPFNKSINPNKE 240 Query 266 RETIQKARNFDVPLMGNLRSDVPVSLENIVFKCTAVKRENSKWMYSDTKQLLADLAQWQT 325 RETIQKARNFD+PLM RSD+P SLENI F+CTAVKREN+KW+YS TK+LL DLA W+ Sbjct 241 RETIQKARNFDLPLMQATRSDIPNSLENIAFRCTAVKRENNKWLYSSTKELLEDLANWEN 300 Query 326 EQTLIKPVHERILEGQNEMRELMVSNYLPWYLRKGVLIFFSVVLLALLIAVVSFFII 382 EQ +IKP +ER+LEGQ E+RE+M+ L WY + L F++V + L+IA + +I Sbjct 301 EQAMIKPANERVLEGQVEIREMMLEKPLAWYFKTWALSIFTIVFIGLIIAAIVLLLI 357 Lambda K H a alpha 0.321 0.137 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44722677 Query= gi|13507988|ref|NP_109937.1| conserved hypothetical protein, 154-190 similar to GTP/ATP binding proteins [Mycoplasma pneumoniae M129] Length=278 Score E Sequences producing significant alignments: (Bits) Value gi|12044962|ref|NP_072772.1| hypothetical protein MG110 [Mycoplas... 345 2e-122 >gi|12044962|ref|NP_072772.1| hypothetical protein MG110 [Mycoplasma genitalium G-37] Length=278 Score = 345 bits (886), Expect = 2e-122, Method: Compositional matrix adjust. Identities = 162/272 (60%), Positives = 198/272 (73%), Gaps = 0/272 (0%) Query 7 GIVFQRFGKQFKVFVENQTLVAFAQKKLQWKRDFKLLVGDKVTLENGVIVAVEERKNTLV 66 GIV Q KQ KVF NQ + AF QKKLQWK DFKL+VGD+V LE+G I V RKN L Sbjct 7 GIVLQSLAKQCKVFWNNQIITAFPQKKLQWKNDFKLMVGDRVQLEDGAITKVLARKNELT 66 Query 67 RPKVVNVDQVVIVQSLIEPKINWQQLFKLLIHFHAQNVARLVLVITKNDLEFEPAEKARL 126 RP+V NVDQ+V++QSL++PKINW QL KLL++F+A+ + + ++ITK DL+F+P EK +L Sbjct 67 RPRVANVDQIVLIQSLVQPKINWIQLLKLLVYFNAKLIDEIPILITKTDLDFDPMEKQKL 126 Query 127 SELTSFGYQLFFTAPNADLPLTLFTELQNRFSVFMGQSGVGKSSLINRLDSQIHQAIQAL 186 +L F YQLFF + N LP L + SVF GQSGVGKSSLINRLD + Q IQAL Sbjct 127 IDLKQFNYQLFFVSKNEPLPSELIDIFSKKLSVFTGQSGVGKSSLINRLDPSLKQKIQAL 186 Query 187 SAHQFGKNTTTSTVMFPFQNGFICDTPGFNVIDFPNLKQLAAQHFVGFASLIGQCHFSNC 246 S ++FGKNTTT T +F F+ GFICDTPGFNVI NLK LAAQHFVGF +I +CHFSNC Sbjct 187 SVNKFGKNTTTKTTLFSFRGGFICDTPGFNVISIKNLKILAAQHFVGFQKMISKCHFSNC 246 Query 247 THQSEKGCFIVSAVTQKSYSLWLYESYLKLIN 278 HQ EK CF+ ++V + Y WLYE Y K+IN Sbjct 247 YHQYEKDCFVTTSVMKNRYPSWLYEKYRKMIN 278 Lambda K H a alpha 0.324 0.137 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29789397 Query= gi|13507989|ref|NP_109938.1| Glucose-6-phosphate isomerase [Mycoplasma pneumoniae M129] Length=430 Score E Sequences producing significant alignments: (Bits) Value gi|12044963|ref|NP_072773.1| glucose-6-phosphate isomerase (pgi) ... 635 0.0 >gi|12044963|ref|NP_072773.1| glucose-6-phosphate isomerase (pgi) [Mycoplasma genitalium G-37] Length=433 Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 298/427 (70%), Positives = 355/427 (83%), Gaps = 0/427 (0%) Query 1 MESKWLTVDTKHLYGFDEAIFIQKYQKKVNQIHQQFLNQQLPDGHMNGWYSQPDQDHKGL 60 M K LT+D H+YGFD+ I +KYQKKV+QIHQ FL +L DGHM GWY QPDQ+H+ L Sbjct 3 MSDKLLTIDLSHVYGFDKEIIFKKYQKKVDQIHQDFLAHKLADGHMTGWYDQPDQNHQFL 62 Query 61 LKQINTIAKQFNALKVTDIVYLGIGGSYTGIRAILDFLKPEQKANIKVHFVPDISAFNIA 120 LK IN I K+F +LKVTDIVY+GIGGS+TGI+ +LDFLKP+Q+ +K+HFVPD+SAF A Sbjct 63 LKTINQIDKKFKSLKVTDIVYVGIGGSFTGIKTVLDFLKPKQRTGLKIHFVPDLSAFQAA 122 Query 121 AVARAIKGKSWALVVTSKSGRTLEPAVTFRYFRNLLHKQYKQKHALRTVVITDAVKGLLV 180 +V + IK KSWAL+ TSKSGRTLEPA+ FR FRNLL+K+Y KH R VVITD KGLL Sbjct 123 SVIKEIKNKSWALITTSKSGRTLEPALNFRIFRNLLNKRYGNKHYQRVVVITDEKKGLLT 182 Query 181 GMSNQYGYAHLTIPSNIGGRFSTLSPAGLLLAKLCGHDPKQLLLGTLTAKQELANSDLNT 240 M++ +GY L I SNIGGRFSTLSPAGLLLAKL GHDPK +L GTL AK++L + L Sbjct 183 KMASNHGYQKLVIDSNIGGRFSTLSPAGLLLAKLFGHDPKAILKGTLQAKKDLQTTSLEN 242 Query 241 NSAYYYAALRHWLYTTKKLKIEVTVAYHSAYEYLLLQHRQLFGESEGKGGKSLFPTFSLF 300 NSAY YA +RHWLYTTKK KIEV +AYHS YEYLLLQHRQLFGESEGK KSLFPTFS+F Sbjct 243 NSAYLYAVVRHWLYTTKKFKIEVCIAYHSLYEYLLLQHRQLFGESEGKNDKSLFPTFSIF 302 Query 301 TTDLHSMGQLYQEGEKNFFETVIQVQTQFHDLELPPSDFNNDDQLDYLLAKSMNEISNTA 360 T DLHSMGQLYQEGEK FFETVI V+ ++ LPPSDF+NDD+LD+LL KS+NEIS+ A Sbjct 303 TVDLHSMGQLYQEGEKVFFETVIDVKNPLVNINLPPSDFDNDDELDFLLDKSLNEISDVA 362 Query 361 LEAVVEAHFQSNVNIIKLTLKERTTFMFGYFYFWLSMATMMSGSLLGHNVFDQPGVEVYK 420 +++V++AH+Q+NV+IIKLTLKE++ FMFGYFYFWLS+AT+MSGSLLGHNVF+QPGVEVYK Sbjct 363 IDSVIKAHYQANVSIIKLTLKEQSAFMFGYFYFWLSVATVMSGSLLGHNVFNQPGVEVYK 422 Query 421 QLMFAKL 427 +LMF KL Sbjct 423 KLMFEKL 429 Lambda K H a alpha 0.320 0.135 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 50193129 Query= gi|13507990|ref|NP_109939.1| D-ribulose-5-phosphate 3 epimerase [Mycoplasma pneumoniae M129] Length=215 Score E Sequences producing significant alignments: (Bits) Value gi|12044964|ref|NP_072774.1| D-ribulose-5-phosphate 3-epimerase, ... 270 1e-94 >gi|12044964|ref|NP_072774.1| D-ribulose-5-phosphate 3-epimerase, putative [Mycoplasma genitalium G-37] Length=209 Score = 270 bits (690), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 137/208 (66%), Positives = 162/208 (78%), Gaps = 6/208 (3%) Query 9 EIAFSLLPLLHQFDRKLLEQFFADGLRLIHYDVMDHFVDNTVFQGEHLDELQQIGFQVNV 68 ++ FSLLPLL++FD+ LLE +F DGLRLIHYDVMD FV NT F+GE+LDEL+ IGF VNV Sbjct 4 KVVFSLLPLLNRFDKSLLESYFQDGLRLIHYDVMDQFVHNTAFKGEYLDELKTIGFDVNV 63 Query 69 HLMVQALEQILP---VYLHHQAVKRISFHVEPFDIPTIKHFIAQIKQAGKQVGLAFKFTT 125 HLMV EQI+P YL VKRISFHVEPF IK I +K+ GK+VGLAFKFTT Sbjct 64 HLMV---EQIIPQINFYLSQPNVKRISFHVEPFSFAKIKELIQLVKENGKEVGLAFKFTT 120 Query 126 PLVNYERLVQQLDFVTLMSVPPGKGGQAFNSAVFNNLKQAHKYHCSIEIDGGIKLDNIHQ 185 L Y+ +DF+TLMSVPPGKGGQAFN AVF NLK A+ Y+ IEIDGGIK++NI Q Sbjct 121 NLQLYQPFFTTIDFITLMSVPPGKGGQAFNEAVFTNLKIANHYNLKIEIDGGIKVNNIDQ 180 Query 186 IQDDVNFIVMGSGFIKLERWQRQQLLKT 213 I+ V+FIVMGSGFIKLE+WQRQ+LL+T Sbjct 181 IKAFVDFIVMGSGFIKLEQWQRQKLLQT 208 Lambda K H a alpha 0.327 0.142 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21238148 Query= gi|13507991|ref|NP_109940.1| asparaginyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=455 Score E Sequences producing significant alignments: (Bits) Value gi|12044965|ref|NP_072775.1| asparaginyl-tRNA synthetase (asnS) [... 692 0.0 gi|12044988|ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycopl... 73.2 1e-15 >gi|12044965|ref|NP_072775.1| asparaginyl-tRNA synthetase (asnS) [Mycoplasma genitalium G-37] Length=456 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/456 (69%), Positives = 389/456 (85%), Gaps = 1/456 (0%) Query 1 MSATAISDLFEKPAQFKNKKIKLTGWLKNKRTSANIIFLEVNDGSTLLNLQAVVKQ-DQP 59 M + + L + P +F NK+IKL+GW+KNKR SANIIFL ++DGS++ LQAVVKQ D P Sbjct 1 MKSVTVKQLLQTPRKFNNKQIKLSGWVKNKRASANIIFLAISDGSSINTLQAVVKQEDNP 60 Query 60 ELFALAESISLASAVSVSGTVALTPKSKQPLELVVKQINVLSTARADYPLQKKEHSLEFF 119 ++F+L ++++LASAV V G + LTPK+KQPLEL +KQ+++L+ A +DYPLQKKEHS EFF Sbjct 61 QVFSLLQTVNLASAVMVWGEIILTPKAKQPLELKLKQVSLLAQAESDYPLQKKEHSQEFF 120 Query 120 RNNAYLRVRARTYFAIMKVRSLLSQAIFDYFFKNDFVLVHSPILTSNDCEGAGETFELKQ 179 R+NA+LRVRA+TYFA+MK+RS+LS AIF+YFFKNDF+LV SPILTSNDCEGAGETF +K Sbjct 121 RSNAHLRVRAKTYFAVMKIRSVLSHAIFEYFFKNDFILVQSPILTSNDCEGAGETFVIKD 180 Query 180 GKEFFNKTTYLTVSGQFGAECYAQAFKKVFTFGPTFRAEKSHTSRHLSEFWMIEPEVAFA 239 + FFNKTT+LTVSGQFGAE +AQAFKKVFTFGPTFRAEKSHT+RHLSEFWMIEPE+AFA Sbjct 181 SETFFNKTTFLTVSGQFGAEAFAQAFKKVFTFGPTFRAEKSHTNRHLSEFWMIEPEIAFA 240 Query 240 NLKDLIKLIESTVKTVIKQVMQKAKQELDFLEKQFDVKLMERLKQITSTKNFHVLEYTKA 299 NLKDL++LI++ +K +IK+VM+ A EL+ L KQF ++ LK I STK F ++EY+KA Sbjct 241 NLKDLMQLIQNLIKFLIKKVMENASDELNVLAKQFSNDIISNLKTIISTKKFPIIEYSKA 300 Query 300 LEILKTAQASGQANFEVQDFNFGLDLKTEHERFLCEQHFHNQPVFVINYPKDFKAFYMKQ 359 L ILK + + + NFE+ DF+FG+DLKTEHERFLCEQ+F NQP+FVINYPK+ KAFYMK Sbjct 301 LAILKESSDTKKTNFELNDFSFGIDLKTEHERFLCEQYFQNQPLFVINYPKELKAFYMKT 360 Query 360 NADGRTVGAVDLLFPQIGEICGGSEREGNLEKLVERCQAMQIDTQTLNWYLDMRKWGYFA 419 N D +TV AVDLL P+IGEICGGSERE +L +L RCQ++ IDT++LNWYLDMRKWGYFA Sbjct 361 NTDNKTVAAVDLLLPKIGEICGGSERESDLNQLKNRCQSLNIDTKSLNWYLDMRKWGYFA 420 Query 420 SAGFGLGFDRLLAYICGLENIRDAIPFPRAHGSINY 455 SAGFGLGFDRLLAYICGLENIRDAIPFPR HG+IN+ Sbjct 421 SAGFGLGFDRLLAYICGLENIRDAIPFPRVHGTINF 456 >gi|12044988|ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycoplasma genitalium G-37] Length=490 Score = 73.2 bits (178), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 108/457 (24%), Positives = 196/457 (43%), Gaps = 34/457 (7%) Query 10 FEKPAQFKNKKIKLTGWLKNKRTSANIIFLEVNDGSTLLNLQAVVKQDQPELFA-LAESI 68 FEK ++ + KK K T L + + FL + D + L + K+ P+LF E + Sbjct 45 FEKCSEEELKK-KATVSLAGRIIAIRQTFLIIQDFDGQVQL-YINKKIHPKLFDYFNEFV 102 Query 69 SLASAVSVSGTVALTPKSKQPLELVVKQINVLSTARADYPLQKKEHSLEFFRNNAYLRVR 128 + + VSG LT + L L V+++ +++ P +K H L A R Sbjct 103 DIGDQIVVSGKPMLT--KTKVLTLAVEEMKIIAKCLLVPP--EKWHGLTDIETRARKRFL 158 Query 129 ARTYFAIMK----VRSLLSQAIFDYFFKNDFVLVHSPILTSNDCEGAGETFELKQGKEFF 184 TY M+ R+ + ++I + +N F+ V +P L + G K Sbjct 159 DLTYNLAMRDVFLKRTKIIKSIRSFLDQNGFIEVETPTLQA--VLGGANAKPFKTHYNAL 216 Query 185 NKTTYLTVSGQFG-AECYAQAFKKVFTFGPTFRAEKSHTSRHLSEFWMIEPEVAFANLKD 243 YL ++ + + F KV+ G FR E T+ H EF IE A+A+ + Sbjct 217 KADFYLRIANEIALKKLIIGGFNKVYEMGKMFRNEGVDTT-HNPEFTSIEIYQAYADFEV 275 Query 244 LIKLIESTVKTVIKQVMQKA----KQELDFLEKQFDVKLMERLKQITSTKNFHVLEYTKA 299 ++ L+E ++++ + + Q + + ++ + ++E +K++T +F+ ++ ++ Sbjct 276 MLVLVEKLIQSLCESLNQFSFNWNNKTINLKTPFHKITMVELIKKVTGI-DFNSVKDDQS 334 Query 300 LEILKTAQASGQANFEVQDFNFGLDLKTEHERFLCEQHFHNQPVFVINYPKDFKAFYMKQ 359 +L A + Q+ ++L E CEQ +P FV +YPK KQ Sbjct 335 AILLAEKHHVKLAKHQ-QNKQHIINLFFEQ---FCEQTLI-EPTFVTHYPKAVSPL-AKQ 388 Query 360 NADGRTVGAVDLLFPQIGEICGGS-------EREGNLEKLVERCQAMQIDTQTLN-WYLD 411 + LF EI E+ E+ +E Q +T L+ +L+ Sbjct 389 DPSNPEFTQRFELFINGKEIANAYSELNDPLEQRKRFEQQLEEKQLGNDETSELDESFLE 448 Query 412 MRKWGYFASAGFGLGFDRLLAYICGLENIRDAIPFPR 448 +G +AG G+G DRL+ +C +IRD + FP+ Sbjct 449 ALSFGMVNTAGLGIGIDRLVMLLCECNSIRDVVFFPQ 485 Lambda K H a alpha 0.321 0.135 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 53708054 Query= gi|13507992|ref|NP_109941.1| phosphatidylglycerophosphate synthase [Mycoplasma pneumoniae M129] Length=227 Score E Sequences producing significant alignments: (Bits) Value gi|12044966|ref|NP_072776.1| phosphatidylglycerophosphate synthas... 276 2e-96 >gi|12044966|ref|NP_072776.1| phosphatidylglycerophosphate synthase (pgsA) [Mycoplasma genitalium G-37] Length=236 Score = 276 bits (706), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 140/224 (63%), Positives = 173/224 (77%), Gaps = 3/224 (1%) Query 1 MRSPFPVPMVPLTIK--TWQKKLPNWLTIYRIFIAVPTIIFLGLNHLLGSVASFTVLGNV 58 M PFPV M PLT K ++KK+ NWLT+YRIFIA+PTIIF+ L++ LG +A+F+V G + Sbjct 8 MLFPFPVYMAPLTSKFAAYKKKIANWLTVYRIFIALPTIIFIALDNQLGVLANFSV-GAI 66 Query 59 TIHLQVSLFIGGVLFITAVISDYLDGYWARKWRVVSNFGKLWDPLADKVIINGVLIALVA 118 +I LQ+SL IGG LF+TAVISDYLDGY ARKW VSNFGKLWDP+ADKVIINGVLIAL Sbjct 67 SISLQISLLIGGFLFLTAVISDYLDGYLARKWLAVSNFGKLWDPIADKVIINGVLIALAI 126 Query 119 YGYFHFSFLIVIVLRDLVLDGLRFYAQEKQLIIPANQWGKWKTTWQMIAILMSCFVFSFS 178 GYFHFS LIV ++RDLVLDG+R YA EK+++I AN GKWKT QM+ I+ SCFV+SF Sbjct 127 NGYFHFSLLIVFIVRDLVLDGMRIYAYEKKVVIAANWLGKWKTIMQMVGIVFSCFVWSFK 186 Query 179 LKETNSANTKIFYWAIVHLPYYLATAFSLVSFGIYAQQIYKTIK 222 E S N+ +F+W + LPYYLA FS+ SF +Y QIY+ +K Sbjct 187 QSEIASLNSGLFFWLLTQLPYYLAAVFSIWSFIVYNIQIYQQLK 230 Lambda K H a alpha 0.330 0.143 0.461 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22960160 Query= gi|13507993|ref|NP_109942.1| hypothetical protein MPN254 [Mycoplasma pneumoniae M129] Length=157 Score E Sequences producing significant alignments: (Bits) Value gi|12044967|ref|NP_072777.1| hypothetical protein MG115 [Mycoplas... 185 9e-63 >gi|12044967|ref|NP_072777.1| hypothetical protein MG115 [Mycoplasma genitalium G-37] Length=157 Score = 185 bits (469), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 83/157 (53%), Positives = 121/157 (77%), Gaps = 0/157 (0%) Query 1 MYARLIAEKLLNHKLTIATAESVTGGLLSSSLTDIAGASRFFKGAIVAYSNELKKSLLNV 60 M+A LIAEKL +L++ATAESVTGGLL+ LT I GAS +F G ++AY+N++K +LLNV Sbjct 1 MFANLIAEKLQKLQLSVATAESVTGGLLAHCLTSIDGASNYFNGGVIAYNNQVKINLLNV 60 Query 61 KQSTLINHGAVSRYCVREMALGLMQKLNVDIAVACSGVAGPDALENQAVGSLFFCVIVAN 120 + ST+ NHGAVS +C REMA+G+ QK D+ +ACSG+AG A+EN+A+G LFFC+I+ N Sbjct 61 QSSTIANHGAVSSFCAREMAVGVKQKFQADVGIACSGIAGSKAVENKAIGLLFFCIIIGN 120 Query 121 KAYDFETKLPAGSRNELRQLFVQKILQTVEHILSEIS 157 KAYDFE ++ +R + +LF KIL++ ++L++++ Sbjct 121 KAYDFEFEMNQNNRKDNIELFTNKILESFHYLLTKLA 157 Lambda K H a alpha 0.320 0.133 0.360 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13480629 Query= gi|13507994|ref|NP_109943.1| hypothetical protein MPN255 [Mycoplasma pneumoniae M129] Length=251 Score E Sequences producing significant alignments: (Bits) Value gi|12044968|ref|NP_072778.1| hypothetical protein MG116 [Mycoplas... 306 8e-108 >gi|12044968|ref|NP_072778.1| hypothetical protein MG116 [Mycoplasma genitalium G-37] Length=251 Score = 306 bits (784), Expect = 8e-108, Method: Compositional matrix adjust. Identities = 143/251 (57%), Positives = 193/251 (77%), Gaps = 0/251 (0%) Query 1 MQRTLNVGVILCESFISNAQNPVNSYIKIYENVRMFEFAIKLLQESRINFQKILLYVLEE 60 M+RTLN+G++LCE+F+S+ QN V+SY ++YE+VRMFEF +KL Q N Q+ L++ E Sbjct 1 MKRTLNIGIVLCENFLSDQQNAVDSYTQVYEDVRMFEFGLKLFQSLPFNIQETLIFCNAE 60 Query 61 QIPLVEKVVAKYENCWVFRSKHNEVEDIYEAKGFIEDKYKIGLKSSKNQASSYYDNCCFV 120 Q +V+K KY+N VF S+ +V ++YEAK FI++KYK+ K SSYYD+CCF+ Sbjct 61 QHKIVDKAAKKYKNTTVFFSRDTDVANVYEAKVFIQEKYKLTQDYKKRGVSSYYDSCCFI 120 Query 121 VLEACRPLTSKKVVKNVYEKAMIDGAAVAVLPFERQLVCGDNTKAVRQLKDKGNMNYWRQ 180 ++EA RPLT+ K VK+VYEKA+I+ AA+AVLP+ L+ G+N L+DK NYW+Q Sbjct 121 LIEANRPLTAIKTVKSVYEKALIEKAAIAVLPYNGTLMNGNNDVVFSHLQDKNRFNYWKQ 180 Query 181 SSTWELQFPQAYTLNKLNQYHKNLFMKARNMLDLMNISAKNPLSIVDGSAYSFRVVTSLD 240 S +E+Q+PQAYTLNKLNQ+ K F++AR+MLDLM IS K+PLSIVDGSAY+FRVVT+LD Sbjct 181 SKAYEVQYPQAYTLNKLNQFSKQQFLRARSMLDLMKISNKSPLSIVDGSAYAFRVVTNLD 240 Query 241 FEILLGILRNG 251 FEILLGIL+NG Sbjct 241 FEILLGILKNG 251 Lambda K H a alpha 0.321 0.135 0.393 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26172111 Query= gi|13507995|ref|NP_109944.1| hypothetical protein MPN256 [Mycoplasma pneumoniae M129] Length=223 Score E Sequences producing significant alignments: (Bits) Value gi|12044969|ref|NP_072779.1| hypothetical protein MG117 [Mycoplas... 164 6e-53 >gi|12044969|ref|NP_072779.1| hypothetical protein MG117 [Mycoplasma genitalium G-37] Length=214 Score = 164 bits (416), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 146/224 (65%), Gaps = 11/224 (5%) Query 1 MDRKIVQLIHNFSGTEKLKAAVFSHDEQCFFDFVSFDELNSKLTGFLLFDSLEKLFKLVE 60 MD+ I QL+ +F+ T+ ++A S D+ DFVSF+ ++ LTGFL+F++ KL +L+E Sbjct 1 MDKNIFQLVQSFAKTQNVRANYTSQDKNISLDFVSFETVSQSLTGFLIFNNFNKLLQLIE 60 Query 61 TIQQKRSWLYVDELWLINTATENQQLNEVSVWLVKKELAQVGVLTQLDTSLVKLLMASKN 120 I+QK++WLYVD+LW+++ + N+ L + +VW++K+E V V + L ++ S Sbjct 61 LIKQKQTWLYVDQLWIVDLSN-NKALTDATVWIIKQEKLPVSVAAFSNQQLNQVYRNS-- 117 Query 121 TDSALYNTYIKPVELQQ-FTQTPAPDNVNAEQSHLTLESTTDLNNSQLANTPALWEVEQT 179 + S LY +Y+KP+E+QQ FT +P+ +N + ES D NN L++ ++ Sbjct 118 STSPLYLSYVKPIEVQQFFTLSPSINNNPFLNQNPLTESPFDNNNQ-------LFQATKS 170 Query 180 TQELLPTMDFSKFIDELDQITKNFSDLELEPLSFNEGFDEWNQE 223 + + TM+FS+F+DE DQITKNFSD+ELEP+ F + FD+W+++ Sbjct 171 VEPSMETMEFSRFMDEFDQITKNFSDIELEPMQFTQSFDDWSKD 214 Lambda K H a alpha 0.315 0.130 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22386156 Query= gi|13507996|ref|NP_109945.1| UDP-glucose 4-epimerase [Mycoplasma pneumoniae M129] Length=338 Score E Sequences producing significant alignments: (Bits) Value gi|12044970|ref|NP_072780.1| UDP-glucose 4-epimerase (galE) [Myco... 392 1e-138 >gi|12044970|ref|NP_072780.1| UDP-glucose 4-epimerase (galE) [Mycoplasma genitalium G-37] Length=340 Score = 392 bits (1006), Expect = 1e-138, Method: Compositional matrix adjust. Identities = 184/337 (55%), Positives = 248/337 (74%), Gaps = 1/337 (0%) Query 1 MSETKSKVLVLGGLGYIGSCFIDQLLKQYPDVTVSVIDINHTSLALQLLPR-QVNVHFVN 59 M K++V ++GG+GYIGSCF + +Q + V+VID N + ++LL + + +F + Sbjct 1 MIGAKTRVAIVGGIGYIGSCFASFIKEQNDKLIVTVIDNNKNNHVIKLLKKIGIEFYFAD 60 Query 60 LLDRAQLTDTIAQINPDVVFHFAAKTSVKESTEQPLTYFDHNLVGTLNLLHALKELQKPI 119 LLDR +LT+ IA I PDVVFHFAAKTSV ES PL YFD N++GTLNL+ A+ LQKPI Sbjct 61 LLDRHKLTEVIAAIQPDVVFHFAAKTSVSESVHNPLKYFDCNVIGTLNLISAISNLQKPI 120 Query 120 QLFFSSTAAVFGSASTLPIPENLVLEETLASNPYGISKFLSEIVLQTLTRSPHFQVIALR 179 +LFF+S+AAV+G + I E +V+ ET A+NPYG+SKFL E++L + ++ QV+ LR Sbjct 121 KLFFASSAAVYGQTTNSYISEEIVITETQATNPYGLSKFLDELILNAVAKNSQLQVVCLR 180 Query 180 YFNVAGASNPFGNFNKNTTLLIPNLIKAFMEKRTFFLYGDDYDTKDGSCIRDYIHVVDLC 239 +FNVAGA PFGNFN NTTLLIPNL+KAF+++ FFLYG+DY TKDGSCIRDYIHV D+C Sbjct 181 FFNVAGAILPFGNFNGNTTLLIPNLVKAFLKQTPFFLYGNDYATKDGSCIRDYIHVYDIC 240 Query 240 DAHLLAWKWLQANPKVRFESFNLGSGQGFSNWEVINTAQAIFAPEQLQLKIESRRAGDPP 299 +AH L WKWL + +++FE+FNLGSG G SN EVI+ A+ +F P +L L+I +R+ DP Sbjct 241 NAHFLLWKWLNDHRQIKFETFNLGSGIGTSNLEVIDIAKKVFYPSRLNLEIRPKRSWDPA 300 Query 300 VLVVDCTKAKRLLNFQPTRSLHKMLSDETIFYRDFYN 336 +LV + KAK+ F+ TR+L M+SDE FY +FYN Sbjct 301 ILVANVAKAKQTFQFKITRNLKDMISDERNFYENFYN 337 Lambda K H a alpha 0.322 0.137 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37797855 Query= gi|13507997|ref|NP_109946.1| sugar (ribose/galactose) ABC transporter ATP-binding subunit [Mycoplasma pneumoniae M129] Length=572 Score E Sequences producing significant alignments: (Bits) Value gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 821 0.0 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 84.3 7e-20 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 84.0 2e-19 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 75.9 6e-17 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 68.9 2e-14 gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein... 66.6 3e-13 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 62.8 2e-12 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 58.9 6e-11 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/572 (70%), Positives = 480/572 (84%), Gaps = 8/572 (1%) Query 1 MSKIAFRMENICKSFDNGRVKANVDVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPD 60 M K+AF+ME+I KSFDNG++KANVDV+L VYENTVHT+LGENGAGKSTLTSILFGLY+PD Sbjct 1 MEKVAFKMEHISKSFDNGKIKANVDVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPD 60 Query 61 SGKIFIGEEEVHFKSSKDAVQHKIGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKL 120 SGKIFIGE++V+FKSSKDAV+HKIGMVHQHFKL++NYTVLDNIILGNES F Sbjct 61 SGKIFIGEKQVNFKSSKDAVKHKIGMVHQHFKLIENYTVLDNIILGNESRFGF------- 113 Query 121 KLPLLHRKASEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEP 180 LPL++RK SEAKI+ +ME+Y + V+L QKVS LTVGQQQRVEILKVLFRDS+ILIFDEP Sbjct 114 -LPLINRKVSEAKIKTIMEKYGIFVDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEP 172 Query 181 TAVLSDQEIKSFLNIIKNFKKMGKTIVLISHKLNEIKEVAETATILRQGHSVGTFQIKDT 240 TAVLSD EI++FL II NFKK+GKTIVLISHKLNEIK+VA+TAT+LR G VG+F +K T Sbjct 173 TAVLSDLEIQNFLKIIANFKKLGKTIVLISHKLNEIKQVADTATVLRLGKVVGSFDVKTT 232 Query 241 SIDEMARLMMGKELKETKNNTQFTAKGEPVLKVENLHLYLNQNWFYKLIARWNQKRINQL 300 +D++A LMMGKELK+TKN T F AK EPVLKV+NL+L+LN++ YK + R N Q Sbjct 233 PVDKIALLMMGKELKQTKNTTDFVAKDEPVLKVQNLNLFLNKSLAYKFLVRCNNIHKAQQ 292 Query 301 QKQGKPAKTLWLKSWLEGLAAIEKTPRFIRGIVNNLGFGSQQVFDKGISFEIHKGEIFAI 360 K+ KP K LW+ S+L L KTP+ ++G++N LG Q+ D+ ISF IHKGEIFAI Sbjct 293 IKKNKPLKDLWIISFLNKLTTSNKTPKLVKGLINKLGLSYQENTDETISFAIHKGEIFAI 352 Query 361 AGVEGNGQNQLIDLICGLEKAAPKKVFFNGFDISRYSIRKRINAGIGFVLEDRHKYGLIL 420 AGVEGNGQ+QL++LICG+EKAA K+ FN DISR+SIRKRINAGI FVLEDRHKYGLIL Sbjct 353 AGVEGNGQSQLVNLICGIEKAASNKLIFNNIDISRWSIRKRINAGISFVLEDRHKYGLIL 412 Query 421 DQTVRFNAVNNQIDRKQFSSWNFLNQMQIAVYTNQIVDKFDVRGAVQGTAIVRLLSGGNQ 480 DQTVRFN VNNQI+ + FSSWNFL M+IA+Y+N I+ KFDVRG+ +G+A+VR LSGGNQ Sbjct 413 DQTVRFNTVNNQINNRPFSSWNFLKPMEIALYSNTIIKKFDVRGSAEGSAVVRRLSGGNQ 472 Query 481 QKLIIGRELTKQNELLVFAQVTRGLDVGAISFIHQKILDAKKQNNAILLVSYELDEILAI 540 QKLIIGRE+TKQN+LLV AQVTRGLD+GAI+FIH+ IL AK N AILLVSYELDEILA+ Sbjct 473 QKLIIGREMTKQNDLLVLAQVTRGLDIGAIAFIHENILLAKANNKAILLVSYELDEILAL 532 Query 541 ADTIGVINKGNLLEVNKRDVMTRERIGKLIMQ 572 ADT+ VINKG ++ + KRD+M R+ IG+LIMQ Sbjct 533 ADTVAVINKGRIVGMGKRDLMDRQSIGRLIMQ 564 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 84.3 bits (207), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 68/239 (28%), Positives = 119/239 (50%), Gaps = 38/239 (16%) Query 25 DVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKIFIGEEEVHFKSSKDAVQHKI 84 +++ +VYE ++G NG+GKST++ +L GL +P +G+I I + V F + +++ I Sbjct 26 ELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDNV-SYLRNNI 84 Query 85 GMVHQHFKLVDN----YTVLDNIILGNESSFSIPFTNGKLKLPLLHRKASEAKIQAMMER 140 G++ Q+ DN TV D+I G E ++ S KI+A+++ Sbjct 85 GIIFQN---PDNQFIGITVEDDIAFGLE-----------------NKCFSRQKIKAIIDE 124 Query 141 YDLHVN----LHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTAVLSDQEIKSFLNII 196 L + Q+ L+ GQ+QRV I VL + I+IFDE TA+L + K+ + Sbjct 125 VTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFM 184 Query 197 KNFKKMGKTIVLISHKLNEIKE-----VAETATILRQGHSVGTFQIKDTSIDEMARLMM 250 K GK ++ I+H + E+ + V +++QG V F TS E+ ++ + Sbjct 185 VKLAKQGKCVISITHDMEEVTKADKVLVMNEGKLIKQGKPVEVF----TSEQELQKIRL 239 Score = 61.6 bits (148), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/221 (25%), Positives = 105/221 (48%), Gaps = 18/221 (8%) Query 348 ISFEIHKGEIFAIAGVEGNGQNQLIDLICGLEK--AAPKKVFFNGFDISRYSIRKRINAG 405 +SF +++GE I G G+G++ + L+ GL K A K+F D S R N G Sbjct 27 LSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDNVSYL-RNNIG 85 Query 406 IGFVLEDRHKYGLILDQTVRFNAVNNQIDRKQFSSWNFLNQMQIAVYTNQIVDKFDVRGA 465 I F D G+ ++ + F N R++ + ++++ + T+ + + Sbjct 86 IIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKA--IIDEVTLQTQTDGFIKQEP---- 139 Query 466 VQGTAIVRLLSGGNQQKLIIGRELTKQNELLVFAQVTRGLDVGAISFIHQKILDAKKQNN 525 LSGG +Q++ I L +++F + T LD A I Q ++ KQ Sbjct 140 -------HNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGK 192 Query 526 AILLVSYELDEILAIADTIGVINKGNLLEVNKR-DVMTRER 565 ++ ++++++E+ AD + V+N+G L++ K +V T E+ Sbjct 193 CVISITHDMEEVTK-ADKVLVMNEGKLIKQGKPVEVFTSEQ 232 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 84.0 bits (206), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 122/235 (52%), Gaps = 21/235 (9%) Query 17 NGRVKANVDVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKI-----FIGEEEV 71 N +K D + T +N ++ ++G++G+GKSTL + GL +P+ G I +IG ++ Sbjct 31 NNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIYIGAKQR 90 Query 72 HFKSSKDAVQHKIGMVHQ--HFKLVDNYTVLDNIILGNESSFSIPFTNGKLKLPLLHRKA 129 K+ K ++ I +V Q ++L + TV +I+ G P G+ K R+ Sbjct 91 KIKNFKK-LRKTISIVFQFPEYQLFKD-TVEKDIMFG-------PVALGQSKYD--ARQK 139 Query 130 SEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTAVLSDQEI 189 + ++ M +Y L + L+ GQ++RV I +L + +ILIFDEPTA L + Sbjct 140 AAYYLEMMGLKYPF---LERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGE 196 Query 190 KSFLNIIKNFKKMGKTIVLISHKLNEIKEVAETATILRQGHSVGTFQIKDTSIDE 244 + + +IK K+ +T+ +I+H++ + EVA+ +L +G V + +D+ Sbjct 197 REMMQLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMDQ 251 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 75.9 bits (185), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/229 (29%), Positives = 112/229 (49%), Gaps = 26/229 (11%) Query 8 MENICKSFDNG---RVKANVDVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKI 64 + +CK+ NG ++ N +NL + +LG++G+GK++L S++ L +P SG Sbjct 55 FKEVCKAVTNGINNQLICN-HINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDS 113 Query 65 FI-GEEEVHFKSSK-DAVQHK-IGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLK 121 F+ G + +K A+++K +G + Q + L+ + V DNI KL Sbjct 114 FVCGTNTICCSDAKLTALRNKNVGYIFQQYGLLRDLDVDDNI---------------KLA 158 Query 122 LPLLHRKASEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPT 181 LPL R + + H H+KV +L+ GQQQRV I + L ++ IL DEPT Sbjct 159 LPLKKRFNNNLEELLERLELKEH--RHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPT 216 Query 182 AVLSDQEIKSFLNIIKNFKK-MGKTIVLISHKLNEIKEVAETATILRQG 229 ++ K L + + G TIV+++H +I E+A+ + G Sbjct 217 GAVNIDISKKILQFFVEYNRDKGTTIVIVTHN-EKIVELAKRVIKIHDG 264 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 68.9 bits (167), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 96/194 (49%), Gaps = 19/194 (10%) Query 25 DVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKIFIGEEEVHFKSSKDAVQHK- 83 DV+L + + +LG +G+GK+TL +++ G G + + +S+ + ++ Sbjct 107 DVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLLTYRK 166 Query 84 --IGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLKLPLLHRKASEAKIQAMMERY 141 +G V+Q + L++ + DNI + L+ + I+ + E+ Sbjct 167 NNLGYVYQRYNLIELLSAYDNIAISQN---------------LIPKYQRRLDIEELAEKL 211 Query 142 DLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTAVLSDQEIKSFLNIIKNFKK 201 D+ L++ ++ GQ+QRV I + + ++ +L+ DEPT L ++ +N+++ K Sbjct 212 DIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINK 271 Query 202 MGK-TIVLISHKLN 214 K TI++++H ++ Sbjct 272 TYKQTILMVTHDVS 285 >gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=589 Score = 66.6 bits (161), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 113/216 (52%), Gaps = 20/216 (9%) Query 7 RMENICKSFDNGRVKANVDVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKIFI 66 R EN+ ++ + +N +V V ++G GAGKST+ ++L Y+P GKI++ Sbjct 353 RFENVAFGYNKDK-PTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYM 411 Query 67 GEEEVHFKSSKDAVQHKIGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLKLPLLH 126 E+ +K A + KI +V Q L T+ +NI LG + + T+ ++ Sbjct 412 DNFEIS-DVTKKAWREKISIVLQDSFLFSG-TIKENIRLGRQDA-----TDDEIIAACKT 464 Query 127 RKASEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTA---V 183 A + I + + YD +++ K L+VG++Q + I + + R++ +L+ DE T+ V Sbjct 465 ANAHDF-IMRLPKGYDTYIS--NKADYLSVGERQLLTIARAVIRNAPVLLLDEATSSVDV 521 Query 184 LSDQEIK-SFLNIIKNFKKMGKTIVLISHKLNEIKE 218 S++ I+ S ++KN KT +ISH+L+ I++ Sbjct 522 HSEKLIQESIGRLMKN-----KTSFIISHRLSIIRD 552 Score = 63.2 bits (152), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/256 (27%), Positives = 122/256 (48%), Gaps = 30/256 (12%) Query 320 AAIEKTPRFIRGIV--NNLGFGSQQVFDK----GISFEIHKGEIFAIAGVEGNGQNQLID 373 A I+K P I+G + N+ FG + DK GI+F + G++ AI G G G++ +I+ Sbjct 340 ATIDKLPD-IKGNIRFENVAFGYNK--DKPTLTGINFSVKHGDVVAIVGPTGAGKSTIIN 396 Query 374 LICGLEKAAPKKVFFNGFDISRYSIRKRINAGIGFVLEDRHKYGLILDQTVRF---NAVN 430 L+ K K++ + F+IS + +K I VL+D + + + +R +A + Sbjct 397 LLMKFYKPFEGKIYMDNFEISDVT-KKAWREKISIVLQDSFLFSGTIKENIRLGRQDATD 455 Query 431 NQI--DRKQFSSWNFLNQMQIAVYTNQIVDKFDVRGAVQGTAIVRLLSGGNQQKLIIGRE 488 ++I K ++ +F+ ++ Y I +K D LS G +Q L I R Sbjct 456 DEIIAACKTANAHDFIMRLPKG-YDTYISNKAD------------YLSVGERQLLTIARA 502 Query 489 LTKQNELLVFAQVTRGLDVGAISFIHQKILDAKKQNNAILLVSYELDEILAIADTIGVIN 548 + + +L+ + T +DV + I + I K N ++S+ L I+ A I VIN Sbjct 503 VIRNAPVLLLDEATSSVDVHSEKLIQESIGRLMK-NKTSFIISHRL-SIIRDATLIMVIN 560 Query 549 KGNLLEVNKRDVMTRE 564 G +LE+ D + ++ Sbjct 561 DGKVLEMGNHDQLMKQ 576 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 62.8 bits (151), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/219 (25%), Positives = 102/219 (47%), Gaps = 26/219 (12%) Query 25 DVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPD-----SGKIFIGEEEVHFKSSKD- 78 D+NL + N + L+G++G GKST L L + +G I+ + ++ D Sbjct 101 DINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGIINDL 160 Query 79 AVQHKIGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLKLPLLHRKASEAKI--QA 136 ++ +GMV Q N+++ +NI G ++ +H K + +I QA Sbjct 161 TLRTSVGMVFQKLTPF-NFSIFENIAYG-------------IRAHGIHNKNAINEIVRQA 206 Query 137 MMERY---DLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIFDEPTAVLSDQEIKSFL 193 ++ ++ NLH+ + L+ GQQQR+ I + + D+L+ DEPT+ L S Sbjct 207 LISAALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIE 266 Query 194 NIIKNFKKMGKTIVLISHKLNEIKEVAETATILRQGHSV 232 +I+ K+ TIV+++H + + + + G + Sbjct 267 LLIQQLKEKF-TIVIVTHSMAQTIRITDETIFFADGRVI 304 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 58.9 bits (141), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 32/233 (14%) Query 8 MENICKSFDNGRVKANV--DVNLTVYENTVHTLLGENGAGKSTLTSILFGLYQPDSGKIF 65 ++N+ K NG V V+L + + +LG +G+GK+TL +I+ G+ + SG + Sbjct 235 LKNVYKYITNGITTNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVI 294 Query 66 I-GEEEVHFKSSK--DAVQHKIGMVHQHFKLVDNYTVLDNIILGNESSFSIPFTNGKLKL 122 + G + K Q +G + Q + L+ N TV +NI +G Sbjct 295 VNGYNMICLNDRKLTKFRQKYVGYIFQQYGLLPNLTVRENIEIGAN-------------- 340 Query 123 PLLHRKASEAKIQAMMERYDLHVNLHQKVSRLTVGQQQRVEILKVLFRDSDILIF-DEPT 181 L + I A++E + + + L+ GQQQRV I + F + +LIF DEPT Sbjct 341 -LQPDPSKRISIDALLEAVGMDSLQKKLPNELSGGQQQRVSIARA-FAKNPLLIFGDEPT 398 Query 182 AVLSDQE-----IKSFLNIIKNFKKMGKTIVLISHKLNEIKEVAETATILRQG 229 L D E +K FL I K ++ T+++++H N I +A+ + G Sbjct 399 GAL-DLEMTQIVLKQFLAIKKRYQ---TTMIIVTHN-NLIANLADLVIYVADG 446 Lambda K H a alpha 0.320 0.137 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 69395613 Query= gi|13507998|ref|NP_109947.1| sugar (ribose/galactose) ABC transporter permease subunit, but probably C-terminal [Mycoplasma pneumoniae M129] Length=517 Score E Sequences producing significant alignments: (Bits) Value gi|12044972|ref|NP_072782.1| hypothetical protein MG120 [Mycoplas... 637 0.0 >gi|12044972|ref|NP_072782.1| hypothetical protein MG120 [Mycoplasma genitalium G-37] Length=520 Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/510 (63%), Positives = 407/510 (80%), Gaps = 1/510 (0%) Query 5 NYLKHRFLFSKDKFWYAPFKQKQRRSIYSTFSLIVLSFIVSFFLIVAIPGIKGGTFLEIF 64 +Y KH +F KD+F ++ KQ QRRSI S+ LI+LSF++SF LI++IPG +G +F +F Sbjct 8 SYFKHHLVFWKDRFLHSSEKQMQRRSILSSVVLIILSFLISFLLIISIPGGRGASFFALF 67 Query 65 TRLFKDRINIENFARQIAIYTLAALAFSFCMSVGVFNIGISGQMMAGANFGFMMILKVFP 124 T+LF D N ENF RQIAIY LA LAFSFCMSVG+FNIGISGQMMAGA FGF+MILKVFP Sbjct 68 TKLFLDNTNTENFLRQIAIYILAGLAFSFCMSVGIFNIGISGQMMAGAIFGFLMILKVFP 127 Query 125 ESFRPAFGGQIITILLMILGSVTVAMVVAALKVFFKVNEVVSAIMLNWVIVLVSAYLVGT 184 SFRP FGGQIIT+LLM++GSV+VA+VVA LK+FFKVNEVVSAIMLNW++VL+SAYLV T Sbjct 128 SSFRPGFGGQIITVLLMVIGSVSVAVVVATLKIFFKVNEVVSAIMLNWIVVLISAYLVET 187 Query 185 YIKPEKTDTSQFYSIELPDAFALYNFSDVQQKYGWLTSLVIAIAAAIFIAVLMKFTVFGH 244 YIK T+QF+S+ LPD FALYNFS + +K+GWL SL+IA + I +AV++K+TVFGH Sbjct 188 YIKDNSGGTAQFFSLPLPDEFALYNFSPLTKKFGWLASLIIAFISVIIVAVVLKYTVFGH 247 Query 245 KLKSTGLSVTGSQAAGYSVKKYQFLSFVISGILSGLLAAVVYTASFEKQLTFSDVGDFGI 304 KLKS G SV GSQA G++V+KYQFLSF+ISGILSGLLA VVYTAS EK LTF++VGD I Sbjct 248 KLKSIGSSVFGSQAMGFNVRKYQFLSFIISGILSGLLATVVYTASTEKVLTFNNVGDSAI 307 Query 305 TSVPITGFDGIAIGLIALNSPARIVIVSTIISFVTIGAKPAGLNAATASLVLGIMMYFAA 364 ++VP TGFDGIAIGLIALN+P RIVIVS +I+FV IGA+PA LN TASLVLGIMMYFAA Sbjct 308 SAVPATGFDGIAIGLIALNNPFRIVIVSVLIAFVNIGARPANLNPNTASLVLGIMMYFAA 367 Query 365 IYNLMIYIKPWRMIVKLNISKMNEAAYDEFQNEMAANLETLSFQRFLDKQKRKHDKERMV 424 +YNLM+Y KPWR +VKLNI K+N Y+ ++N++AANLE LSFQRFL KQK+K+DK + Sbjct 368 LYNLMVYFKPWRYLVKLNIGKINLTTYETYENKLAANLEWLSFQRFLSKQKKKNDKTKFN 427 Query 425 WFDTKRFEEYQKKKQATLQTFHENSSQNLLQYWKQQLLVADVK-RLTFKWDFLTFKHQQK 483 WFDT FE+Y K KQ +Q +H N + NL+ +W + ++K TFK +F+ FKHQQK Sbjct 428 WFDTSLFEQYAKNKQEIVQEYHHNCATNLIAWWLNAIQSGNIKPSTTFKLEFVNFKHQQK 487 Query 484 YILRWYKGKNKKQTALENEFASLNEAISQK 513 ++L W+K +++ +++F +N+ + ++ Sbjct 488 FVLNWFKNESESLRDFQSQFERINKLVERE 517 Lambda K H a alpha 0.326 0.138 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 62070059 Query= gi|13507999|ref|NP_109948.1| sugar (ribose/galactose) ABC transporter permease subunit [Mycoplasma pneumoniae M129] Length=311 Score E Sequences producing significant alignments: (Bits) Value gi|12044973|ref|NP_072783.1| hypothetical protein MG121 [Mycoplas... 405 9e-145 >gi|12044973|ref|NP_072783.1| hypothetical protein MG121 [Mycoplasma genitalium G-37] Length=306 Score = 405 bits (1040), Expect = 9e-145, Method: Compositional matrix adjust. Identities = 210/308 (68%), Positives = 256/308 (83%), Gaps = 3/308 (1%) Query 5 LISFSNLDNWLFVAPALLLAVLSGYLSERVGIVNIAINGGMVFGGMFLSLMSYAFVPNAN 64 ++S + L++W F+APALLLAVLSGYL+ERVGI+NIAINGGMVFGG+F++L+SY F N N Sbjct 1 MLSLAQLESWFFIAPALLLAVLSGYLAERVGIINIAINGGMVFGGLFMALLSYGFTNNLN 60 Query 65 DSAPSWSLAISIPLSVIFASAVGFLFGIAAIKLKADHVIVGTGVNLLGTGINFFVAQNAR 124 SAPSWSL I+IPLSV+F+S +G LF +AA+KL+ADHVIVGTG+NLL +GI F++QNA Sbjct 61 QSAPSWSLFITIPLSVLFSSVIGCLFALAAVKLRADHVIVGTGINLLASGITLFISQNAA 120 Query 125 SLLNDTDLRVRYSF-VRTGNSVSIEGIAIFAFAIIFVLLVWYLMNFTKTGLRYRAVGENP 183 SL +DT LRVRY F ++T +VSIE I +F F+++ + VWYLM+FTKTGLRYRAVGENP Sbjct 121 SLFSDTTLRVRYLFPIQT--TVSIEAIGVFVFSLLLIGFVWYLMSFTKTGLRYRAVGENP 178 Query 184 NVIDTQGISVYKYQWFGVMASTMVAALAGCCFALSPQVPSFSSGDVSGFGFIAIAIMIIS 243 NVIDTQGISVYKYQW G + S MVA L+G F LS F+SGDV+G GFIAIAIMIIS Sbjct 179 NVIDTQGISVYKYQWIGAICSMMVAGLSGSLFVLSVSNFPFNSGDVNGLGFIAIAIMIIS 238 Query 244 MWRIIPSIVISPLFALAYVLTTGVVGNANNTYLLRTIPFIISLLVMMVFGYLNVGPKNVG 303 MWRIIPSI I +FA AYV T +G+ +N+YLLRTIPFIISLLVM++FG+LNV PKN+G Sbjct 239 MWRIIPSIFIGLIFAYAYVFTNSQIGSNSNSYLLRTIPFIISLLVMLLFGFLNVAPKNIG 298 Query 304 KHFDKGLR 311 KHFDKGLR Sbjct 299 KHFDKGLR 306 Lambda K H a alpha 0.328 0.141 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 34233809 Query= gi|13508000|ref|NP_109949.1| DNA topoisomerase I [Mycoplasma pneumoniae M129] Length=711 Score E Sequences producing significant alignments: (Bits) Value gi|12044974|ref|NP_072784.1| DNA topoisomerase I (topA) [Mycoplas... 1041 0.0 >gi|12044974|ref|NP_072784.1| DNA topoisomerase I (topA) [Mycoplasma genitalium G-37] Length=709 Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/714 (71%), Positives = 591/714 (83%), Gaps = 12/714 (2%) Query 1 MSKNLVVIESPNKVKTLQKYLPND-FEIVSTIGHIREMVHKNFGFNEADYSPVWEDWTKS 59 M KNLVVIESPNKVKTL++YLP+D FEIVST+GHIREMV+KNFGF+E Y+P+WEDWTK+ Sbjct 1 MIKNLVVIESPNKVKTLKQYLPSDEFEIVSTVGHIREMVYKNFGFDENTYTPIWEDWTKN 60 Query 60 KKKFSSLSFKGNLKGKKLLSKYDIIKSIKEKASKATNIYLATDPDREGEAISWHVYDVLD 119 K+K LLSK++IIKSIK KAS A NI+LA+DPDREGEAISWHVYD+LD Sbjct 61 KQKNPKQK--------HLLSKFEIIKSIKAKASDAQNIFLASDPDREGEAISWHVYDLLD 112 Query 120 EKDKSKCQRITFNEITKNAVLDALKNPREIDQSWVQSQFARQILDRMIGFRLSRLLNNYL 179 +KDK+KC+RITFNEITK AV+DALK PR ID +WV+SQFARQILDRMIGFRLSRLLN+YL Sbjct 113 QKDKAKCKRITFNEITKKAVVDALKQPRNIDLNWVESQFARQILDRMIGFRLSRLLNSYL 172 Query 180 SAKSAGRVQSVALRFLEEREQEIRSFVPRFWWTLDVLLNPKAEGVREACANRSIPIVLRE 239 AKSAGRVQSVALRFLEERE+EI FVPRFWWT+DVLLN K + CAN+SIP+VLRE Sbjct 173 QAKSAGRVQSVALRFLEEREKEIAKFVPRFWWTVDVLLN-KENNQKVVCANKSIPLVLRE 231 Query 240 INPALRAGLK--FEEEKSVSGIDFLDEASAKKFGEQLKGVFEVYNIDETKHYSSSPNSAY 297 INP L A LK FE ++VSGIDFL+EASA +F QL G +EVY IDE K Y SSPN Y Sbjct 232 INPELSASLKLDFEAAENVSGIDFLNEASATRFANQLTGEYEVYFIDEPKIYYSSPNPVY 291 Query 298 TTASLQKDAINKLGWSSKKVTLIAQHLYEGVSINGEQTALISYPRTDSTRLSAQFQQSCK 357 TTASLQKDAINKLGWSSKKVT++AQ LYEG+S+NG+QTALISYPRTDS R+S QFQ C+ Sbjct 292 TTASLQKDAINKLGWSSKKVTMVAQRLYEGISVNGKQTALISYPRTDSIRISNQFQSECE 351 Query 358 EYILNHYGEKYLSNRIVSAKGKKGEKIIQDAHEAIHPTDINITPEMVKNAIKKDEFLLYR 417 +YI +G YL+++ + KK EKIIQDAHE IHPT I ITP +KN +K+DEFLLYR Sbjct 352 KYIEKEFGSHYLADKNKLKRHKKDEKIIQDAHEGIHPTYITITPNDLKNGVKRDEFLLYR 411 Query 418 LIWIRTVASLMADCKKSHTHIRFINDGNKFYASSKSLVFDGYRKIYEHFENKESNDLYID 477 LIWIRTVASLMAD K S T +RFIN NKFY SSKSL+FDGY+++YE + ++LYID Sbjct 412 LIWIRTVASLMADAKTSRTIVRFINQKNKFYTSSKSLLFDGYQRLYEEIKPNTKDELYID 471 Query 478 LDKIRVGDRFMAKDIKITARQTHPAARYTQASLIEALEKSNIGRPSTYNTMASVNLDRGY 537 L K+++GD+F + I + +T+P RYTQASLIE LEKSNIGRPSTYNTMASVNL+RGY Sbjct 472 LSKLKIGDKFSFEKISVNEHKTNPPPRYTQASLIEELEKSNIGRPSTYNTMASVNLERGY 531 Query 538 ASLNKHAFHVTQLGEQVNEELSKHFGKIINKEFTKNMEKSLDEIAENKKNYQEFLRDFWS 597 A+L F++T+LGE+VN ELSKHFG +INKEFTK MEKSLDEIAENK NYQEFL+ FW+ Sbjct 532 ANLVNRFFYITELGEKVNNELSKHFGNVINKEFTKKMEKSLDEIAENKVNYQEFLKQFWT 591 Query 598 NFKEEVKLAEGSIQRVKKEKEFVGRDCPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEF 657 NFK +VKLAE SIQ+VKKEKE V RDCP C PL+YRYTKRGNEKFVGCS+FP CKY+EF Sbjct 592 NFKSDVKLAENSIQKVKKEKELVERDCPKCNQPLVYRYTKRGNEKFVGCSDFPKCKYSEF 651 Query 658 SQNKPNLTLEKLEELCPECNSQLVKRRTKFNPNKTFVGCSNFPRCRYIKKDNAS 711 S KP LTLE L+ELCPECN++LVKRRTKFN KTF+GCSNFP CR+IKKDNA+ Sbjct 652 SNPKPKLTLETLDELCPECNNKLVKRRTKFNAKKTFIGCSNFPNCRFIKKDNAA 705 Lambda K H a alpha 0.316 0.132 0.382 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 87911074 Query= gi|13508001|ref|NP_109950.1| conserved hypothetical protein, similar to reticulocyte binding protein [Mycoplasma pneumoniae M129] Length=475 Score E Sequences producing significant alignments: (Bits) Value gi|12044975|ref|NP_072785.1| hypothetical protein MG123 [Mycoplas... 356 1e-120 >gi|12044975|ref|NP_072785.1| hypothetical protein MG123 [Mycoplasma genitalium G-37] Length=471 Score = 356 bits (913), Expect = 1e-120, Method: Compositional matrix adjust. Identities = 196/461 (43%), Positives = 301/461 (65%), Gaps = 0/461 (0%) Query 15 IIWALVSAILILSILIWLIITIFFAWNLHLKNNKKRTKYHLEPEQIKHKIIQNKTKLGKM 74 +I A V L I++ + + A++LHLK NK KY L +QI+ ++ + + +L + Sbjct 11 LIVAFVIVSLFFLIIVGFALNLAIAFSLHLKQNKNNKKYILNDQQIQLRLTEKQAQLTTL 70 Query 75 LDFYQQQINTTATELKWLDGQFQQIDETDKKKAHQIAIRLARNQLLQQLSVKLDQKQFSQ 134 L+FYQQ+I + E WL+ Q Q ID+ D K+A ++ + L ++Q+L QL+ KL QK+ Q Sbjct 71 LNFYQQKIESVNREKSWLESQLQVIDKKDLKQAQKLTLHLKKDQILAQLNEKLIQKKVDQ 130 Query 135 RANNELQKLKLSNLESFTNQKIKWDQEGMKSAVSRVTINEWTFNHFAGKNRVYWDYFKQV 194 NELQK KLS LE +QKIK + KSA + + E FN FA KN+V W+YFKQV Sbjct 131 PLVNELQKTKLSYLERLVDQKIKLSENNFKSAFLKTKVKETAFNIFAAKNKVNWEYFKQV 190 Query 195 CDVDCSIKPLKDQLEITFSSWSLLKRLQAKNLFNKLIAQSSSVKMSEKLINNALQLVQDN 254 CD DC++K L+D++EITFS+WS L+R+QA F KLI++ +VK++E +IN L V++ Sbjct 191 CDADCTLKNLEDEVEITFSNWSYLRRMQALLAFEKLISKIKTVKINELVINETLDEVKNE 250 Query 255 LALQASESGNKLLKEFELSCTNTQLVQLLGFQQFYFGTNLLSLLDLSRSIAVLVRFLNEH 314 ++ A ++G K++KEF+++ N Q+ +L+G Q++YFGT+ L+LL+L+ LV LN+ Sbjct 251 ISQTAFQAGEKIVKEFQITNLNEQITRLIGLQKYYFGTDQLNLLELAVLTTKLVILLNKK 310 Query 315 CKWELNERLLVETALFNNLQWVNNNDFFLKSHNDLKQLHLSAEQLAIIEQQNRPFYIDAY 374 K +L+ LL +LFN L+WV+NN FF + L QL +S + +AII+QQ FY D Y Sbjct 311 FKLDLDLELLKAASLFNYLKWVDNNQFFQILNTKLNQLLISDQVIAIIQQQELSFYPDQY 370 Query 375 ALLIAGVKQMLMEHDAVEPKQIHFHNAKKVMESFQLFGIDQLALIEYNNCLYGFVTTKLY 434 +LI GVK M+ EH+ ++ +++ F N+ K++++F L+ ++ + +EYNNC Y FV+ K + Sbjct 371 GMLINGVKTMIREHNTIDFEKLVFLNSTKLIDNFYLYDLNMIHAVEYNNCFYYFVSVKPF 430 Query 435 EIKQLDDLALFKVLFKSFLNKHLKQKFATISLFVNTQTLMI 475 EIK L +L LF VL K+FL K KQ + LF+ T+ L I Sbjct 431 EIKSLAELDLFVVLLKTFLAKKQKQNPKAVKLFITTKILAI 471 Lambda K H a alpha 0.322 0.134 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56185313 Query= gi|13508002|ref|NP_109951.1| thioredoxin [Mycoplasma pneumoniae M129] Length=102 Score E Sequences producing significant alignments: (Bits) Value gi|12044976|ref|NP_072786.1| thioredoxin (trxA) [Mycoplasma genit... 152 2e-51 >gi|12044976|ref|NP_072786.1| thioredoxin (trxA) [Mycoplasma genitalium G-37] Length=102 Score = 152 bits (383), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 70/102 (69%), Positives = 80/102 (78%), Gaps = 0/102 (0%) Query 1 MVTEIKSLKQLGELFASNNKVIIDFWAEWCGPCKITGPEFAKAASEVSTVAFAKVNVDEQ 60 MVTEI+SLKQL E+F++ VI+DFWA WCGPCK+T PEF KAA E S F KVNVD+ Sbjct 1 MVTEIRSLKQLEEIFSAKKNVIVDFWAAWCGPCKLTSPEFQKAADEFSDAQFVKVNVDDH 60 Query 61 TDIAAAYKITSLPTIVLFEKGQEKHRAIGFMPKAKIVQLVSQ 102 TDIAAAY ITSLPTIV+FE G EK RAIGFMPK KI+ L + Sbjct 61 TDIAAAYNITSLPTIVVFENGVEKKRAIGFMPKTKIIDLFNN 102 Lambda K H a alpha 0.318 0.131 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6505708 Query= gi|13508003|ref|NP_109952.1| 150-end, similar to phosphate hydrolising [Mycoplasma pneumoniae M129] Length=281 Score E Sequences producing significant alignments: (Bits) Value gi|12044977|ref|NP_072787.1| hypothetical protein MG125 [Mycoplas... 353 3e-125 >gi|12044977|ref|NP_072787.1| hypothetical protein MG125 [Mycoplasma genitalium G-37] Length=285 Score = 353 bits (905), Expect = 3e-125, Method: Compositional matrix adjust. Identities = 163/267 (61%), Positives = 214/267 (80%), Gaps = 0/267 (0%) Query 15 SRTRQINDPTKQALANLIQKKPSLKVMILTGRSLFSTLKYVQELNELCKKPLVEYFCCYG 74 S+T++IN+P+K AL NLI KKPSLKVMILTGRS+FSTLK+V++LN L KKP+V+YFCCYG Sbjct 15 SKTKKINNPSKLALTNLIAKKPSLKVMILTGRSVFSTLKHVEKLNSLFKKPIVDYFCCYG 74 Query 75 GAKLYQLNNNQPQEQYKFLIDSRQVKTVFEIVEQHKGLFLAYLDKPKAPYIILGANQFYA 134 GAKLYQ+ N+PQE+YKF +++ V+T F I+++H+GL LAYLD +PY+ L N+ Sbjct 75 GAKLYQIEANKPQERYKFCLENSVVETTFSIIKKHRGLCLAYLDSYVSPYLCLAGNKLLG 134 Query 135 WLIKQFWYKQRCEYFKNDHLTDGILKINVYFACPLRLKKVYQIIKRQFQDTLNVVNFSKH 194 W K FWY++RC +F +HL GILKI+VYF R KKVY+I+K FQ+ +NV++FS + Sbjct 135 WFTKYFWYRKRCVFFNQNHLKQGILKISVYFLSAKRCKKVYEILKNTFQEKVNVLSFSNN 194 Query 195 LIEITHKDGNKGYAIEAIAKKQGLSLKRMAVIGDSLNDRSMFEKVQYSFAMSKSPDELKL 254 LIEITH D NKGYAIE +AK++ LSL R+AVIGDS ND +MF+K +YSFAMSKSP +LKL Sbjct 195 LIEITHHDANKGYAIEYMAKREQLSLNRIAVIGDSWNDYAMFKKAKYSFAMSKSPSQLKL 254 Query 255 LATEIGTKTNRFRFSSLVDLITEKIIN 281 +AT KTNR+RFS+L++LI+E IIN Sbjct 255 IATNTSNKTNRYRFSTLLNLISETIIN 281 Lambda K H a alpha 0.323 0.139 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30216996 Query= gi|13508004|ref|NP_109953.1| tryptophanyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=346 Score E Sequences producing significant alignments: (Bits) Value gi|12044978|ref|NP_072788.1| tryptophanyl-tRNA synthetase (trpS) ... 470 2e-169 >gi|12044978|ref|NP_072788.1| tryptophanyl-tRNA synthetase (trpS) [Mycoplasma genitalium G-37] Length=347 Score = 470 bits (1210), Expect = 2e-169, Method: Compositional matrix adjust. Identities = 235/342 (69%), Positives = 280/342 (82%), Gaps = 0/342 (0%) Query 1 MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 60 M+KRA+TGIQASG+QHLGN+LGVMQ L +LQ Q QLF+FVADLH+ITVDF+P LK NN Sbjct 1 MIKRAITGIQASGRQHLGNFLGVMQGLKQLQSQYQLFLFVADLHAITVDFEPTMLKDNNL 60 Query 61 DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 120 LV+TLLA+GLD K LFLQSDL+EH+M+GYLM+ QSNLGELQRMTQFK KK Q RN Sbjct 61 QLVKTLLALGLDYGKVNLFLQSDLMEHTMLGYLMLTQSNLGELQRMTQFKTKKLAQKRNS 120 Query 121 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP 180 N T+ IPTGLLTYP LMA DILLYQPDIVPVGNDQKQHLELT DLA+R+ KKFKLKL+LP Sbjct 121 NNTITIPTGLLTYPVLMAADILLYQPDIVPVGNDQKQHLELTNDLAKRVAKKFKLKLKLP 180 Query 181 QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATTDSFNKIRFAP 240 F++NKDTNRIMDL +P KKMSKS+ +QNGVIYLDD KE ++KK+R+ATTDSFNKIRFA Sbjct 181 VFIENKDTNRIMDLSNPLKKMSKSNPDQNGVIYLDDSKETIIKKVRKATTDSFNKIRFAK 240 Query 241 KTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNI 300 KTQPGVTN+L IL ALLKE VN +L+ ++G+DL Y+ KSYLDLKN L+ A +N++ ++ Sbjct 241 KTQPGVTNLLVILTALLKEEVNHNLSKKIGSDLVKYYQNKSYLDLKNDLSSAVINVIESL 300 Query 301 QRKREQISREQVFNCLQAGKNQAQATARTTLALFYDGFGLGS 342 + K+ QI+ E V L GKNQA+ A TL +FY FGL S Sbjct 301 KFKKAQITDEMVLKVLNDGKNQAKKVADETLKMFYKAFGLTS 342 Lambda K H a alpha 0.319 0.134 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 38930375 Query= gi|13508005|ref|NP_109954.1| similar to (oxido/arsenate) reductase [Mycoplasma pneumoniae M129] Length=145 Score E Sequences producing significant alignments: (Bits) Value gi|12044979|ref|NP_072789.1| hypothetical protein MG127 [Mycoplas... 214 1e-74 >gi|12044979|ref|NP_072789.1| hypothetical protein MG127 [Mycoplasma genitalium G-37] Length=145 Score = 214 bits (545), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 110/135 (81%), Positives = 126/135 (93%), Gaps = 0/135 (0%) Query 5 KVNNDAGKTFILISSSCSSCQKAIEYFKENNLSYTIENFYKKPISDKRFRDILSLSEDGT 64 K N+DAGKTFILISSSCSSCQKAIE+F +N +SY +ENFYKKPISDKRF+DILSLSEDGT Sbjct 6 KKNSDAGKTFILISSSCSSCQKAIEFFDQNKISYVVENFYKKPISDKRFKDILSLSEDGT 65 Query 65 ESLFSKRADQIRSNTNQSVEDLTIPELIKLIRERPSILRRPIIIQYNSSGIPKRMRIGYN 124 ESLFSKRADQI++ + SVE+L+I ELIKL+RERPS+LRRPIIIQYNSSGIPKRMRIGYN Sbjct 66 ESLFSKRADQIKATNSVSVEELSISELIKLVRERPSLLRRPIIIQYNSSGIPKRMRIGYN 125 Query 125 AAEIKVFERSLMEPK 139 ++EIKVFER L+EPK Sbjct 126 SSEIKVFERKLIEPK 140 Lambda K H a alpha 0.317 0.133 0.360 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11925834 Query= gi|13508006|ref|NP_109955.1| hypothetical protein MPN267 [Mycoplasma pneumoniae M129] Length=259 Score E Sequences producing significant alignments: (Bits) Value gi|12044980|ref|NP_072790.1| hypothetical protein MG128 [Mycoplas... 399 3e-144 >gi|12044980|ref|NP_072790.1| hypothetical protein MG128 [Mycoplasma genitalium G-37] Length=259 Score = 399 bits (1026), Expect = 3e-144, Method: Compositional matrix adjust. Identities = 190/259 (73%), Positives = 220/259 (85%), Gaps = 0/259 (0%) Query 1 MKYKIFASTTPQTEPVLQKLKQVLKGCEAVEKGFDYLFVLGGDGFFVSTVANYNCHNCRV 60 MKYKIFASTTPQTEPVL KL+ VLK +AVE G++Y+FVLGGDGFFVST+ANYNC +C+V Sbjct 1 MKYKIFASTTPQTEPVLNKLRAVLKTWQAVENGYEYVFVLGGDGFFVSTLANYNCDSCKV 60 Query 61 VGINTGHLGFYTSFNEKDLDDNFLQKLQQCHFQRISLLEVSVNGQQHLVLNELAVYTNTA 120 VGINTGH+GFYTSFN DLD+NF+ KL F++I+LLEV LVLNELAVYTNTA Sbjct 61 VGINTGHIGFYTSFNGDDLDENFISKLTSFEFKKINLLEVKTKNHSFLVLNELAVYTNTA 120 Query 121 YPINIFIDGEAWEFYRGSGLLIGPRTGSTALAKSAKGAVIFPGIDVLQIIEMNPLLHPNQ 180 YPINIFID WE YRGSGLLIGPRTGSTALAKSAKGAVIFP +DV+QIIE+NPLLHPNQ Sbjct 121 YPINIFIDDNHWESYRGSGLLIGPRTGSTALAKSAKGAVIFPNVDVVQIIELNPLLHPNQ 180 Query 181 VTIQSPIILPKETQVEFVVKKAFNPQQFPTFYCDGRKLELPNADTTLALKLVQSTPMFNI 240 +TIQSPIILP +T+VEF +KKAF +QFP FY DG KL+L N DT+++ +LV S MF+ Sbjct 181 ITIQSPIILPMQTKVEFRIKKAFKAEQFPNFYADGIKLDLKNEDTSISFQLVLSRSMFHA 240 Query 241 SLKTQDFINKLKSTFIKQS 259 SLKT+DFI+KLKSTFIKQS Sbjct 241 SLKTKDFIDKLKSTFIKQS 259 Lambda K H a alpha 0.321 0.138 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27081270 Query= gi|13508007|ref|NP_109956.1| similar to PTS system: EIIB and N-term part of EIIC; bidomainal [Mycoplasma pneumoniae M129] Length=117 Score E Sequences producing significant alignments: (Bits) Value gi|12044981|ref|NP_072791.1| hypothetical protein MG129 [Mycoplas... 160 4e-54 >gi|12044981|ref|NP_072791.1| hypothetical protein MG129 [Mycoplasma genitalium G-37] Length=117 Score = 160 bits (404), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 72/117 (62%), Positives = 97/117 (83%), Gaps = 0/117 (0%) Query 1 MKVLLWIGYVLSFGLLYLYLVKRAKRAALQLNNKLVESHTIPFAVRDFIAACGGRTNFVS 60 MK LLW+GY+ SFGLLYL++VK++K+ A Q N KLVES +IPF V+DF++ACGG+ NFV+ Sbjct 1 MKWLLWLGYIFSFGLLYLWIVKKSKQIAQQPNTKLVESTSIPFKVKDFVSACGGKENFVN 60 Query 61 LRTSPTQLIVSFAKPELVQIAALQKLGIKGINKSQNQYRFVLGNFVNQLKQQIENER 117 ++T+PTQLIV+F V + L L IKGINK+QNQ+RFVLGNFVN+LK++IE+E+ Sbjct 61 IKTTPTQLIVTFKDVNSVSLTKLNALNIKGINKNQNQFRFVLGNFVNELKKKIEDEQ 117 Lambda K H a alpha 0.325 0.139 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8372673 Query= gi|13508008|ref|NP_109957.1| nucleotide binding protein [Mycoplasma pneumoniae M129] Length=493 Score E Sequences producing significant alignments: (Bits) Value gi|12044982|ref|NP_072792.1| hypothetical protein MG130 [Mycoplas... 572 0.0 >gi|12044982|ref|NP_072792.1| hypothetical protein MG130 [Mycoplasma genitalium G-37] Length=484 Score = 572 bits (1475), Expect = 0.0, Method: Compositional matrix adjust. Identities = 284/483 (59%), Positives = 368/483 (76%), Gaps = 8/483 (2%) Query 9 SIAKTFAETSIFAILFLIIVILNLGLLVFLAYQYRVYKK-KQRANLTKQTYNNDYGQIVN 67 SIA+ F TS FA LFLII+ NL L +L +QYR+YKK ++AN K N+Y +I Sbjct 8 SIAQLFFNTSFFAFLFLIIIAFNLCLFAYLYFQYRIYKKNPKKANNFKA---NEYEKIKL 64 Query 68 LKQQNGAKIKELANLKDQLSELGQKFNTTLSEIINKPLVNVIDEYLDEQFKQAANFREAE 127 LK QN + +L ++L+EL + + L IINKPL +++++LDEQ KQ + Sbjct 65 LKNQNFTESNKLIATTNELNELTSQLDNILVRIINKPLAKLVNDFLDEQIKQIVKLDKN- 123 Query 128 LNAVLDSNDQKTVFHKRLFNKFHFGVDKLANINVKNPLNLCWVDSASFTVIESDFRKLNG 187 ++ S F+ +LFN FHFGVDKL NIN+KNPL WV S SF + ESDFRKLNG Sbjct 124 -SSDFHSESDNLPFYTKLFNDFHFGVDKLININIKNPL-YNWVYSPSFLISESDFRKLNG 181 Query 188 VGGINKKLLIEKLRIEDIIFTNIDKKYYEVQILSDSPVKVQKTVLTIRNILINDYVDNEK 247 + GINKKLL+EKLRIEDI+FT+++KKY EV +L++SP+K QKTVLT+RNIL+NDYVDNE+ Sbjct 182 ISGINKKLLVEKLRIEDIVFTDLNKKY-EVNVLTESPIKAQKTVLTVRNILMNDYVDNER 240 Query 248 IESYAREANGYFNDHCKLIGKQVLERLNIFEISPKLHKFFGLLAFRYSFGQNVLSHCLET 307 IESY ++AN +F +HCK IGK++LE LNIF S LH+ FG LAFRYSFGQNVLSH LET Sbjct 241 IESYVQQANFFFTEHCKKIGKEILESLNIFISSSSLHRHFGFLAFRYSFGQNVLSHSLET 300 Query 308 GFLTAYLALLVNFKPDVALKCGLYHDIGKADDENGKKNHTVTGAKIGDEFYFENDVKYTI 367 FLTA+LA L+ +++LKCGL HDIGK++D+NGK++HT+TGAK+ ++F +D+KYTI Sbjct 301 AFLTAHLAALIELDSELSLKCGLLHDIGKSNDDNGKESHTITGAKLAEQFQLPDDIKYTI 360 Query 368 ANHHNKNVDNVYCRLTQIGDKLSAGRLGARSDSSVLFSQLKQELKQIVEETLAQFKTTIL 427 ANHHNK++DN YCRLTQI DKLSA R+GARSDSS+LF QLK ELK+IV++T+ F TTIL Sbjct 361 ANHHNKHIDNTYCRLTQIADKLSAARIGARSDSSLLFKQLKDELKKIVDKTINNFHTTIL 420 Query 428 LGQSGRRLVIWLETNQHNNIIDNQQLTDLATTIKSKIVQNNITNRFPIKVVLRYNFEHSF 487 LGQSGRRL+IWLET N ++ N+Q+ ++ IK++I +N ITN FPIKVV+RYNFEHSF Sbjct 421 LGQSGRRLMIWLETKNQNQLLSNEQIIEMVEKIKAEIAKNPITNHFPIKVVIRYNFEHSF 480 Query 488 DTK 490 +TK Sbjct 481 NTK 483 Lambda K H a alpha 0.320 0.137 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 58707347 Query= gi|13508009|ref|NP_109958.1| hypothetical protein MPN270 [Mycoplasma pneumoniae M129] Length=95 Score E Sequences producing significant alignments: (Bits) Value gi|12044983|ref|NP_072793.1| M. genitalium predicted coding regio... 92.4 3e-28 >gi|12044983|ref|NP_072793.1| M. genitalium predicted coding region MG131 [Mycoplasma genitalium G-37] Length=74 Score = 92.4 bits (228), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 46/72 (64%), Positives = 60/72 (83%), Gaps = 0/72 (0%) Query 1 MQYTVLIPLFIFIGAMVLFGFSFQKKQPQRRIVQILFLAYCVDFLALIIAVMMLTFLSYD 60 MQY+ LIPLFI + ++VLF FSF+K Q + +IV+ILF AYC+DFLALI+AVM+LTFLS+ Sbjct 1 MQYSALIPLFILLISLVLFCFSFRKNQSENQIVKILFFAYCIDFLALILAVMLLTFLSHG 60 Query 61 DLMLGVLIPVLI 72 L L +LIPVL+ Sbjct 61 LLSLAILIPVLV 72 Lambda K H a alpha 0.346 0.157 0.470 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5636958 Query= gi|13508010|ref|NP_109959.1| hypothetical protein MPN271 [Mycoplasma pneumoniae M129] Length=251 ***** No hits found ***** Lambda K H a alpha 0.318 0.133 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26172111 Query= gi|13508011|ref|NP_109960.1| hypothetical protein MPN272 [Mycoplasma pneumoniae M129] Length=93 ***** No hits found ***** Lambda K H a alpha 0.316 0.131 0.361 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5340276 Query= gi|13508012|ref|NP_109961.1| nucleotidyl hydrolases/transferase [Mycoplasma pneumoniae M129] Length=144 Score E Sequences producing significant alignments: (Bits) Value gi|12044984|ref|NP_072794.1| hit protein, putative [Mycoplasma ge... 207 5e-72 >gi|12044984|ref|NP_072794.1| hit protein, putative [Mycoplasma genitalium G-37] Length=141 Score = 207 bits (527), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 92/134 (69%), Positives = 117/134 (87%), Gaps = 0/134 (0%) Query 8 ANNNCIFCGIVEGNVKSFKVGENEHAFAFLDAFPVADGHTLVIPKKHAVNYSSTDDESLK 67 ++CIFC IV+G++ S+K+GENEHA AFLDAFPVADGHTLVIPKKHAV++SSTD + L+ Sbjct 5 TTSSCIFCDIVQGSITSYKIGENEHAIAFLDAFPVADGHTLVIPKKHAVDFSSTDQKELQ 64 Query 68 AVSLLAKEMALKLQQRLQPAGLNYVVNEGAKAGQEVFHYHMHVVPKYETGLGFCYNVRKT 127 AVSLLAK++ALKL+ L+P+GLNYV NEGA AGQ VFH+H+H+VPKYETG GF YNV KT Sbjct 65 AVSLLAKQIALKLKMTLKPSGLNYVSNEGAIAGQVVFHFHLHIVPKYETGKGFGYNVNKT 124 Query 128 NNRSIEANWELLTK 141 N RS+E N++L+++ Sbjct 125 NKRSLEENYQLISE 138 Lambda K H a alpha 0.317 0.132 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11780397 Query= gi|13508013|ref|NP_109962.1| ABC transporter (sulfate/molybdenum) permease subunit [Mycoplasma pneumoniae M129] Length=266 Score E Sequences producing significant alignments: (Bits) Value gi|12044985|ref|NP_072795.1| hypothetical protein MG133 [Mycoplas... 297 4e-104 gi|12045311|ref|NP_073122.1| hypothetical protein MG452 [Mycoplas... 62.4 3e-13 >gi|12044985|ref|NP_072795.1| hypothetical protein MG133 [Mycoplasma genitalium G-37] Length=228 Score = 297 bits (760), Expect = 4e-104, Method: Compositional matrix adjust. Identities = 144/225 (64%), Positives = 177/225 (79%), Gaps = 0/225 (0%) Query 36 MVASAVISVVYNNQPQLIWFTNFDTFTYQSNTIAAVCVLMYLCKRRCKLFDNNALFLSAA 95 MV +A+ISV + Q LIWFTNFDTFTYQSN++A V Y + + F+N++L LS Sbjct 1 MVITALISVANSGQMSLIWFTNFDTFTYQSNSLAIFLVWYYFLNHKSRWFENSSLVLSVT 60 Query 96 GYLVFTVIFFNLYVLSRVTGFVNVEEHVKGWFSTITSEMPYSFSGNPLTDWISFAQLFLH 155 GYLVFTVIFFN Y LSR TG VN+E V+GWFSTIT+++PYSF+G+ + DW +F++L LH Sbjct 61 GYLVFTVIFFNFYALSRFTGIVNIEPDVQGWFSTITTQLPYSFNGSFINDWNAFSELLLH 120 Query 156 VIYPASFFGFIWIFFKTYKMREPLHELGKFLLKAGVYPSLYAFYLQTVPFLKIWDNGHDS 215 VI+P +F ++ + FKTYK +P L FLLKAG+YPS+YAFYLQT+PFL +WDNG +S Sbjct 121 VIHPLFYFIYVGLLFKTYKFIKPPRNLQSFLLKAGIYPSIYAFYLQTIPFLNVWDNGENS 180 Query 216 YSVYGFFSQTKYNSYVWFWSIPIFASMFLILWGLFVINNRYYGAK 260 YSVYGFF+QTKYNSYVW WSIPIFASMFLILW LFVINN YYG K Sbjct 181 YSVYGFFTQTKYNSYVWIWSIPIFASMFLILWMLFVINNHYYGKK 225 >gi|12045311|ref|NP_073122.1| hypothetical protein MG452 [Mycoplasma genitalium G-37] Length=261 Score = 62.4 bits (150), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 30/188 (16%) Query 59 DTFTYQSNTIAAVCVLMYLCKRRCKLFDNNALFLSAAGYLVFTVIFFNLYVLSRVTGFVN 118 D FT Q+N + + ++Y + L N FLSA Y++FT I +NL +LS + G Sbjct 65 DKFTDQTNVMLLIYAVIYTFNPKSWLLKNQQFFLSALAYILFTFIGYNL-ILS-IAGI-- 120 Query 119 VEEHVKGWFSTITSEMPYSFSGNPLTDWISFAQLFLHVIYPASFFGFIWIFFKTYKMREP 178 S PY + + +FLHVI P +FF +I K K Sbjct 121 ----------AYKSTNPYKLT----------SSIFLHVIAPIAFFIASFIKIKHEKDVN- 159 Query 179 LHELGKFLLKAGVYPSLYAFYLQTVPFLK--IWDNGHDSYSVYGFFSQTKYNSYVWFWSI 236 ++ K LL +YP +Y YL T+P+++ +++ +Y++YG + TK N + W + Sbjct 160 INMFFKSLLLFMIYPLIYGLYLVTIPYVRHYLFNGRPSTYTIYGSITNTKNNPFAW---L 216 Query 237 PIFASMFL 244 +FA +F+ Sbjct 217 VVFAVLFI 224 Lambda K H a alpha 0.331 0.143 0.474 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28079001 Query= gi|13508014|ref|NP_109963.1| hypothetical protein MPN275 [Mycoplasma pneumoniae M129] Length=100 Score E Sequences producing significant alignments: (Bits) Value gi|12044986|ref|NP_072796.1| hypothetical protein MG134 [Mycoplas... 148 4e-50 >gi|12044986|ref|NP_072796.1| hypothetical protein MG134 [Mycoplasma genitalium G-37] Length=100 Score = 148 bits (374), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 71/100 (71%), Positives = 82/100 (82%), Gaps = 0/100 (0%) Query 1 MSFKKITEMMRQAERQSKQKALDFEQKLFEYSYKNAAIKIIIFGNLTIKSITIDPALIDP 60 MSFKKI EMMRQAER++K+K L FEQ+ FEY+YKN AIKI I G+LT+KSI IDP LID Sbjct 1 MSFKKIAEMMRQAERETKKKTLAFEQQAFEYNYKNGAIKITILGDLTLKSINIDPVLIDA 60 Query 61 EDKVTLEEMITEAVNEAVGDVKAKYDQLMEEAMPQMPGLF 100 DKV LEEMI EA NEAV DVK KYD L+E+ MP++PGLF Sbjct 61 SDKVILEEMIIEATNEAVSDVKTKYDNLVEKTMPKVPGLF 100 Lambda K H a alpha 0.316 0.132 0.349 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6209994 Query= gi|13508015|ref|NP_109964.1| hypothetical protein MPN276 [Mycoplasma pneumoniae M129] Length=285 Score E Sequences producing significant alignments: (Bits) Value gi|12044987|ref|NP_072797.1| hypothetical protein MG135 [Mycoplas... 382 9e-137 >gi|12044987|ref|NP_072797.1| hypothetical protein MG135 [Mycoplasma genitalium G-37] Length=280 Score = 382 bits (982), Expect = 9e-137, Method: Compositional matrix adjust. Identities = 183/279 (66%), Positives = 231/279 (83%), Gaps = 5/279 (2%) Query 1 MQSLNYLVVILTVAGVLVILGFTPLIRKLKIQFYCLQVFAAILFLYVFFGRQIIYIFPDI 60 MQ+LNYLV+IL +AGV+ +L FTPL+RKLKI+FY +QV A +LF+YVFFGRQIIY+FPD+ Sbjct 1 MQTLNYLVIILIIAGVISVLAFTPLVRKLKIRFYLIQVLAIVLFVYVFFGRQIIYLFPDV 60 Query 61 YGTAAKAKNAVANVPLDSLRLSRIFLLDLCPFFALIGPIFIFLRQKKVAGVLAIFGFYGA 120 YG +N+ ++ LDSLRLSRIFLLDLCPFFA+I P+F+FL+QKK++GVLA+FG +GA Sbjct 61 YG-----QNSQSSQNLDSLRLSRIFLLDLCPFFAVIAPVFVFLKQKKISGVLAVFGLFGA 115 Query 121 AITLFGELIFTPLKQEEIVKFLFVGLENNQVYFMMHFLSFLLSLAVFLWDDGFSLISFFY 180 +TLFGELIFTP+ +++IV F+FVG NNQ+YFMMHFLS L+SLA+ LWD+ FSLISFFY Sbjct 116 LVTLFGELIFTPVNEQDIVNFIFVGTGNNQIYFMMHFLSLLVSLAIILWDNCFSLISFFY 175 Query 181 IHVFALAYLSYVALMVNIFKGQITGNTTGILAEDWLSGEYKNVAVFLKLDPKNADLIFGV 240 IHVFAL Y SYVALMV++FKGQITGNTTGILA DW +GEYKNVA FL L + L+F V Sbjct 176 IHVFALIYFSYVALMVSVFKGQITGNTTGILASDWTNGEYKNVATFLNLSNSDPQLVFIV 235 Query 241 SFGLSYFAIVLLTVLVNIPTFIQLTKDKQMVKLALQLKK 279 F LSY AI+L+T+ NIPTF+++ KDK +K ++K Sbjct 236 GFSLSYVAILLMTLFANIPTFMEMKKDKIFIKKENLIRK 274 Lambda K H a alpha 0.334 0.148 0.436 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30787128 Query= gi|13508016|ref|NP_109965.1| lysyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=489 Score E Sequences producing significant alignments: (Bits) Value gi|12044988|ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycopl... 771 0.0 gi|12044886|ref|NP_072696.1| aspartyl-tRNA synthetase (aspS) [Myc... 69.3 3e-14 gi|12044965|ref|NP_072775.1| asparaginyl-tRNA synthetase (asnS) [... 68.2 5e-14 >gi|12044988|ref|NP_072798.1| lysyl-tRNA synthetase (lysS) [Mycoplasma genitalium G-37] Length=490 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/490 (74%), Positives = 425/490 (87%), Gaps = 1/490 (0%) Query 1 MSDRLNDQAQNRLQKLLNLKQTGNDPYLITKIENTHSAASFQKAFANQSDAELKQYQVI- 59 MSDRLNDQAQ+RLQKLL LKQT NDPYL+TK THS+ SFQ F S+ ELK+ + Sbjct 1 MSDRLNDQAQHRLQKLLRLKQTNNDPYLVTKTSLTHSSKSFQVEFEKCSEEELKKKATVS 60 Query 60 LTGRIIALRQTFIIIQDFSGKMQLYINKKTAPELFEYFNNYIDLGDQIVATGHPMMTKTG 119 L GRIIA+RQTF+IIQDF G++QLYINKK P+LF+YFN ++D+GDQIV +G PM+TKT Sbjct 61 LAGRIIAIRQTFLIIQDFDGQVQLYINKKIHPKLFDYFNEFVDIGDQIVVSGKPMLTKTK 120 Query 120 VLTLNVERLQIVAKCLQTPPEKWHGLTDPEARARKRYLDLTYNRAQVEVFLKRTQIITAI 179 VLTL VE ++I+AKCL PPEKWHGLTD E RARKR+LDLTYN A +VFLKRT+II +I Sbjct 121 VLTLAVEEMKIIAKCLLVPPEKWHGLTDIETRARKRFLDLTYNLAMRDVFLKRTKIIKSI 180 Query 180 RTFLNEAGFLEVETPILQAVLGGANAKPFKTHYNALKGDFYLRIANEIALKKLIVGGLPK 239 R+FL++ GF+EVETP LQAVLGGANAKPFKTHYNALK DFYLRIANEIALKKLI+GG K Sbjct 181 RSFLDQNGFIEVETPTLQAVLGGANAKPFKTHYNALKADFYLRIANEIALKKLIIGGFNK 240 Query 240 VYEMGRMFRNEGVDTTHNPEFTSIEMYQANADYAVMMDLTENLIKFVCKTLNQWSFNWNG 299 VYEMG+MFRNEGVDTTHNPEFTSIE+YQA AD+ VM+ L E LI+ +C++LNQ+SFNWN Sbjct 241 VYEMGKMFRNEGVDTTHNPEFTSIEIYQAYADFEVMLVLVEKLIQSLCESLNQFSFNWNN 300 Query 300 QTLDLAKPFKKVKMVDLICQVTGVNFDDVKDDQTAIALAKQHKVELKKHEQNKQHIINRF 359 +T++L PF K+ MV+LI +VTG++F+ VKDDQ+AI LA++H V+L KH+QNKQHIIN F Sbjct 301 KTINLKTPFHKITMVELIKKVTGIDFNSVKDDQSAILLAEKHHVKLAKHQQNKQHIINLF 360 Query 360 FEQFCEHTLIQPTFVTHYPKAVSPLAKQDPHNPEFTERFELFINTKELANAYSELNDPLE 419 FEQFCE TLI+PTFVTHYPKAVSPLAKQDP NPEFT+RFELFIN KE+ANAYSELNDPLE Sbjct 361 FEQFCEQTLIEPTFVTHYPKAVSPLAKQDPSNPEFTQRFELFINGKEIANAYSELNDPLE 420 Query 420 QRARFEQQLQEKRMGNDEASELDESFLDALSFGLPPTGGLGIGVDRLVMLLCECSSIRDV 479 QR RFEQQL+EK++GNDE SELDESFL+ALSFG+ T GLGIG+DRLVMLLCEC+SIRDV Sbjct 421 QRKRFEQQLEEKQLGNDETSELDESFLEALSFGMVNTAGLGIGIDRLVMLLCECNSIRDV 480 Query 480 VFFPQLRELK 489 VFFPQLRE K Sbjct 481 VFFPQLREHK 490 >gi|12044886|ref|NP_072696.1| aspartyl-tRNA synthetase (aspS) [Mycoplasma genitalium G-37] Length=550 Score = 69.3 bits (168), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 107/238 (45%), Gaps = 29/238 (12%) Query 58 VILTGRIIALRQ----TFIIIQDFSGKMQLYINKKTAPELFEYFNNYIDLGDQIVATGHP 113 +++ G I +++ FII+ D SG +Q+ K Q + Sbjct 21 IVIIGWIKRIKKLGEINFIIVGDKSGTIQVTCKDKEQI--------------QQLTREDI 66 Query 114 MMTKTGVLTLNVERLQIVAKCLQ------TPPEKWHGLTDP--EARARKRYLDLTYNRAQ 165 ++ K + L+ R +++ ++ TPP TD E R + RYLDL Q Sbjct 67 VIVKAKLQRLDSVRFELINPTIKLFSKSKTPPLIIEDETDALEEVRLKYRYLDLRRRLMQ 126 Query 166 VEVFLKRTQIITAIRTFLNEAGFLEVETPILQAVLGGANAKPFKTHYNALKGDFYLRIAN 225 + L R Q I AIR + N+ GF+E+ETP L A+ F K FY + + Sbjct 127 KRLLL-RHQFILAIRNWFNQQGFIEIETPTLSKS-TPEGAQDFLVPARIRKDCFYALVQS 184 Query 226 -EIALKKLIVGGLPKVYEMGRMFRNEGVDTTHNPEFTSIEMYQANADYAVMMDLTENL 282 +I + L++ G+ K +++ R++R+E PE T I+ + + ++M+L E L Sbjct 185 PQIYKQLLMIAGVEKYFQIARVYRDEDSRKDRQPEHTQIDFEISFCNQKMIMNLVEKL 242 Score = 58.9 bits (141), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 32/98 (33%), Positives = 56/98 (57%), Gaps = 16/98 (16%) Query 391 NPEFTERFELFINTKELANAYSELNDPLEQRARFEQQLQEKRMGNDEASELDES----FL 446 N +E+F+L +N E+ + +NDP+ Q KR+ N + +D + L Sbjct 436 NEALSEQFDLVLNGFEIGSGSIRINDPIVQ----------KRLMN--SLNIDPNKFAFLL 483 Query 447 DALSFGLPPTGGLGIGVDRLVMLLCECSSIRDVVFFPQ 484 +A +G P GG+G+G+DRL+M+L + +IR+V+ FP+ Sbjct 484 EAYQYGAPVHGGMGLGIDRLMMILNQTDNIREVIAFPK 521 >gi|12044965|ref|NP_072775.1| asparaginyl-tRNA synthetase (asnS) [Mycoplasma genitalium G-37] Length=456 Score = 68.2 bits (165), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 105/461 (23%), Positives = 187/461 (41%), Gaps = 44/461 (10%) Query 48 QSDAELKQYQVILTGRIIALRQT----FIIIQDFSG--KMQLYINKKTAPELFEYFNNYI 101 Q+ + Q+ L+G + R + F+ I D S +Q + ++ P++F + Sbjct 11 QTPRKFNNKQIKLSGWVKNKRASANIIFLAISDGSSINTLQAVVKQEDNPQVFSLLQT-V 69 Query 102 DLGDQIVATGHPMMTKTGV--LTLNVERLQIVAKCLQTPP--EKWHGLTDPEARARKRYL 157 +L ++ G ++T L L ++++ ++A+ P +K H + A R Sbjct 70 NLASAVMVWGEIILTPKAKQPLELKLKQVSLLAQAESDYPLQKKEHSQEFFRSNAHLRVR 129 Query 158 DLTYNRAQVEVFLKRTQIITAIRTFLNEAGFLEVETPILQA--VLGGANAKPFKTHYNAL 215 TY V R+ + AI + + F+ V++PIL + G K Sbjct 130 AKTY----FAVMKIRSVLSHAIFEYFFKNDFILVQSPILTSNDCEGAGETFVIKDSETFF 185 Query 216 KGDFYLRIANEIALKKLIVGGLPKVYEMGRMFRNEGVDTT-HNPEFTSIEMYQANADYAV 274 +L ++ + + KV+ G FR E T H EF IE A A+ Sbjct 186 NKTTFLTVSGQFGAEAF-AQAFKKVFTFGPTFRAEKSHTNRHLSEFWMIEPEIAFANLKD 244 Query 275 MMDLTENLIKFVCKTLNQWSFNWNGQTLDLAKPFKKVKMVDLICQVTGVNFDDVKDDQTA 334 +M L +NLIKF+ K + + N + + LAK F + +L ++ F ++ + Sbjct 245 LMQLIQNLIKFLIKKVME---NASDELNVLAKQFSNDIISNLKTIISTKKFPIIEYSKAL 301 Query 335 IALAKQHKVELKKHEQN---------KQHIINRFF-EQFCEHTLIQPTFVTHYPKAVSPL 384 L + + E N +H RF EQ+ ++ QP FV +YPK + Sbjct 302 AILKESSDTKKTNFELNDFSFGIDLKTEH--ERFLCEQYFQN---QPLFVINYPKELKAF 356 Query 385 AKQDPHNPEFTERFELFINTKELANAYSELNDPLEQRARFEQQLQEKRMGNDEASELDES 444 + + + +L + SE L Q Q L N + L+ Sbjct 357 YMKTNTDNKTVAAVDLLLPKIGEICGGSERESDLNQLKNRCQSL------NIDTKSLNW- 409 Query 445 FLDALSFGLPPTGGLGIGVDRLVMLLCECSSIRDVVFFPQL 485 +LD +G + G G+G DRL+ +C +IRD + FP++ Sbjct 410 YLDMRKWGYFASAGFGLGFDRLLAYICGLENIRDAIPFPRV 450 Lambda K H a alpha 0.320 0.136 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 58146895 Query= gi|13508017|ref|NP_109966.1| udp-galactopyranose mutase [Mycoplasma pneumoniae M129] Length=399 Score E Sequences producing significant alignments: (Bits) Value gi|12044989|ref|NP_072799.1| UDP-galactopyranose mutase (glf) [My... 505 0.0 >gi|12044989|ref|NP_072799.1| UDP-galactopyranose mutase (glf) [Mycoplasma genitalium G-37] Length=404 Score = 505 bits (1301), Expect = 0.0, Method: Compositional matrix adjust. Identities = 242/398 (61%), Positives = 302/398 (76%), Gaps = 1/398 (0%) Query 1 MTLFSFPNYVNWNKFDFIVLGAGISGIVLSHVLAQHGKSVLLLEKRNQLGGNCYDKLDET 60 + LFS P+ VN N FD +++GAGISGIVL+++LA H K VL++EKR+ +GGNCYDK+D Sbjct 7 VMLFSSPSCVNINSFDILIVGAGISGIVLANILANHNKRVLIVEKRDHIGGNCYDKVDSK 66 Query 61 TGLLFHQYGPHIFHTDNQKVMDFIQPFFELNNYQHRVGLQLDNNLDLTLPFDFSQMRKLL 120 T LLFHQYGPHIFHT+NQ V++FI PFFELNNY HRVGL+L NNLDLTLPFDF Q+ KL+ Sbjct 67 TQLLFHQYGPHIFHTNNQTVINFISPFFELNNYHHRVGLKLKNNLDLTLPFDFQQIYKLM 126 Query 121 DTKTASSLINFFQQHFPAEKHLTLMQLQTINFAPVQQLYQFLKIKVYGPYSVKMWGMPLE 180 K L++FF+++F HL+L +LQ I+ Q+LYQFL VY PYSVKMWG+P Sbjct 127 G-KDGRKLVSFFKENFSLNTHLSLAELQLIDNPLAQKLYQFLISNVYKPYSVKMWGLPFA 185 Query 181 QIDPSVLGRVKISLSENSSYFPTATIQGLPKGGYTKAFTKMVDHPLIDLRLNCPANLISV 240 I+ +V+ RVKI LSE SSYFP A IQGLPK GYT +F KM+ +PLID++LNC NL+ Sbjct 186 MINENVINRVKIVLSEQSSYFPDAIIQGLPKSGYTNSFLKMLANPLIDVQLNCKDNLLVY 245 Query 241 NNNQLLFANQPITKPVVYCGLIDQLFGYCFGRLQYRSLHFEWKRYAVKQHQAYPVMNWPL 300 + +L F N I KPVVYCGLID+LF +CFG LQYRSL F WKR+ K++Q YPV+N PL Sbjct 246 QDEKLFFNNNLIEKPVVYCGLIDKLFNFCFGHLQYRSLAFSWKRFNQKKYQTYPVVNMPL 305 Query 301 HPTITRQVEYKQLTQEGLESNQTIVSCETPGAFREGDPRFMEPYYPLNDVSNNALFARYL 360 +ITR VEYKQLT +G QTIVS ETPG++ DPRF EPYYP+N+ N+ LF +Y Sbjct 306 AKSITRSVEYKQLTNQGSFKPQTIVSFETPGSYAINDPRFNEPYYPINNTLNDTLFKKYW 365 Query 361 KLANAIPNIHLLGRLALYQYIDMDRAIAQSLAKAEQLL 398 K A+ + N+HLLGRLA YQYIDMD+AI S+ KA+QLL Sbjct 366 KKASKLKNLHLLGRLATYQYIDMDKAILLSIKKAQQLL 403 Lambda K H a alpha 0.323 0.139 0.426 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 46133487 Query= gi|13508018|ref|NP_109967.1| GTP-binding membrane protein LepA [Mycoplasma pneumoniae M129] Length=581 Score E Sequences producing significant alignments: (Bits) Value gi|12044990|ref|NP_072800.1| GTP-binding membrane protein (lepA) ... 985 0.0 gi|12044941|ref|NP_072751.1| elongation factor G (fus) [Mycoplasm... 95.5 2e-22 gi|12045310|ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplas... 72.4 3e-15 gi|12044994|ref|NP_072804.1| translation initiation factor 2 (inf... 60.8 2e-11 >gi|12044990|ref|NP_072800.1| GTP-binding membrane protein (lepA) [Mycoplasma genitalium G-37] Length=598 Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/562 (83%), Positives = 517/562 (92%), Gaps = 0/562 (0%) Query 1 MEQQKIRNFSIIAHIDHGKSTLSDRLIERSIGFEKRLLQAQMLDTMAIERERGITIKLNA 60 MEQ+ IRNFSIIAHIDHGKSTLSDRL+E S+GFEKRLLQAQMLDTM IERERGITIKLNA Sbjct 1 MEQKNIRNFSIIAHIDHGKSTLSDRLLEHSLGFEKRLLQAQMLDTMEIERERGITIKLNA 60 Query 61 VQLKMAQGNQQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYLA 120 V+LK+ N YLFHL+DTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISN YLA Sbjct 61 VELKINVDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNAYLA 120 Query 121 LENNLEIIPVINKVDMESADVEKTKQAFHQLLGVDPNTIPLVSAKTGLGIDQLITTIIEK 180 LENNLEIIPVINK+DM++AD+E TK + H LLGV+ N+I LVSAK LGIDQLI TII K Sbjct 121 LENNLEIIPVINKIDMDNADIETTKDSLHNLLGVEKNSICLVSAKANLGIDQLIQTIIAK 180 Query 181 VPPPKGDESKPLKALLFDSYYDPYKGVVCFIRIFEGSLKLNDKIRFARSNSVYQIVELGI 240 +PPPKG+ ++PLKALLFDSYYDPYKGVVCFIR+F+G LK+NDK+RF +SNSVYQIVELG+ Sbjct 181 IPPPKGEINRPLKALLFDSYYDPYKGVVCFIRVFDGCLKVNDKVRFIKSNSVYQIVELGV 240 Query 241 KNPFFEKQDVLKAGEIGWFSAGIKKLRDVTVGDTIVHAEDTTTPPLPGYKKVLPMIYCGL 300 K PFFEK+D L+AG++GWFSAGIKKLRDV VGDTIV +D T PL GYKK+LPMIYCGL Sbjct 241 KTPFFEKRDQLQAGDVGWFSAGIKKLRDVGVGDTIVSFDDQFTKPLAGYKKILPMIYCGL 300 Query 301 YPIDNNDYQNLKMAMEKIILSDVALEYEYETSQALGFGVRCGFLGLLHMDVIKERLEREY 360 YP+DN+DYQNLK+AMEKII+SD ALEYEYETSQALGFGVRCGFLGLLHMDVIKERLEREY Sbjct 301 YPVDNSDYQNLKLAMEKIIISDAALEYEYETSQALGFGVRCGFLGLLHMDVIKERLEREY 360 Query 361 NLKLISAPPSVRYKVLLTNGEELELDNPSLLPERSRIKSISEPFVRVYIDLPDHYLGTVI 420 NLKLISAPPSV YKVLLTNG+E+ +DNPSLLPERS+IK+ISEPFV+V+IDLPD YLG+VI Sbjct 361 NLKLISAPPSVVYKVLLTNGKEISIDNPSLLPERSKIKAISEPFVKVFIDLPDQYLGSVI 420 Query 421 DLCQNFRGQYEKLEEIDIDRKRLVYLMPLGEIIYSFFDKLKSITKGYASLNYEFDQYQVS 480 DLCQNFRGQYE L EIDI+RKR+ YLMPLGEIIYSFFDKLKSI+KGYASLNYEF YQ S Sbjct 421 DLCQNFRGQYESLNEIDINRKRICYLMPLGEIIYSFFDKLKSISKGYASLNYEFYNYQHS 480 Query 481 QLAKVEIMLNKQKVDALSFIAHHDFAFQRAKKFCVKLKELIPKHLFEIPIQATIGSKVIA 540 QL KVEIMLNKQK+DALSFI+H DFAF+RAKKFC KLKELIPKHLFEIPIQATIGSKVIA Sbjct 481 QLEKVEIMLNKQKIDALSFISHKDFAFKRAKKFCTKLKELIPKHLFEIPIQATIGSKVIA 540 Query 541 RETIKAVRKDVTAKLYGGDVTR 562 RETIKAVRKDV AKLYGGDV+R Sbjct 541 RETIKAVRKDVIAKLYGGDVSR 562 >gi|12044941|ref|NP_072751.1| elongation factor G (fus) [Mycoplasma genitalium G-37] Length=688 Score = 95.5 bits (236), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/178 (35%), Positives = 96/178 (54%), Gaps = 11/178 (6%) Query 4 QKIRNFSIIAHIDHGKSTLSDRLIERSIGFEKRLLQAQ----MLDTMAIERERGITIKLN 59 + RNF I+AHID GK+T S+R++ S G ++ + ++D M E+ERGITI Sbjct 8 KNFRNFGIMAHIDAGKTTTSERILFHS-GRIHKIGETHDGESVMDWMEQEKERGITITSA 66 Query 60 AVQLKMAQGNQQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYL 119 A + + +L+DTPGHVDFT EV RSL +G + ++DA G++ QT + Sbjct 67 ATSVSW----KNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQ 122 Query 120 ALENNLEIIPVINKVDMESADVEKTKQAFHQLLGVD--PNTIPLVSAKTGLGIDQLIT 175 A + + +NK+D A+ E++ + Q LGV P P+ + GI +IT Sbjct 123 ASRYEVPRVIFVNKMDKTGANFERSVLSIQQRLGVKAVPIQFPIGAENDFNGIIDIIT 180 Score = 65.5 bits (158), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 36/245 (15%) Query 163 SAKTGLGIDQLITTIIEKVPPP------------------KGDESKPLKALLFDSYYDPY 204 SA GI L+ +++ +P P K + L F DP+ Sbjct 260 SAFKNKGIKLLLDAVVDFLPSPVDVPPAKAIDANNKEISIKASDDANFIGLAFKVATDPF 319 Query 205 KGVVCFIRIFEGSLKLNDKIRFARSNS---VYQIVELGIKNPFFEKQDVLKAGEIGWFSA 261 G + FIR++ G LK ++ R N V ++V++ +N + D ++AG+I Sbjct 320 VGRLTFIRVYAGVLKSGSYVKNVRKNKKERVSRLVKMHAQNR--NEIDEIRAGDI----C 373 Query 262 GIKKLRDVTVGDTIVHAEDTTTPPLPGYKKVLPMIYCGLYPIDNNDYQNLKMAMEKIILS 321 + L+D T G+T+ +D L + P+I + P D + + +A+ K+ Sbjct 374 AVIGLKDTTTGETLT--DDKLDVQLEAMQFAEPVISLAVEPKTKADQEKMSIALSKLAEE 431 Query 322 DVALEY--EYETSQALGFGVRCGFLGLLHMDVIKERLEREYNLKLISAPPSVRYKVLLTN 379 D + + ET Q + G +G LH+D++ +R++RE+ +++ P V ++ + Sbjct 432 DPTFKTFSDPETGQTIIAG-----MGELHLDILVDRMKREFKVEVNIGAPQVSFRETFKS 486 Query 380 GEELE 384 E+E Sbjct 487 TSEVE 491 >gi|12045310|ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplasma genitalium G-37] Length=394 Score = 72.4 bits (176), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/267 (27%), Positives = 119/267 (45%), Gaps = 26/267 (10%) Query 8 NFSIIAHIDHGKSTLSDRLIERSIGFEKRLLQAQM--LDTMAIERERGITIKLNAVQLKM 65 N I HIDHGK+TL+ I + E + + +D E+ RGITI N+ ++ Sbjct 14 NVGTIGHIDHGKTTLT-AAICTVLAKEGKSAATRYDEIDKAPEEKARGITI--NSAHVEY 70 Query 66 AQGNQQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYLALENNL 125 + + Y VD PGH D+ + A +G +L+V AT + QT + LA + + Sbjct 71 SSDKRHYAH--VDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHILLARQVGV 128 Query 126 -EIIPVINKVDMESAD--VEKTKQAFHQLL---GVDPNTIPLV--SAKTGL--------G 169 +++ +NK D+ S + E + LL G D P++ SA L Sbjct 129 PKMVVFLNKCDIASDEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALEGDPKWEAK 188 Query 170 IDQLITTIIEKVPPPKGDESKPLKALLFDSYYDPYKGVVCFIRIFEGSLKLNDKIRFARS 229 I LI + E +P P + KP + D+ +G V R+ G LK+ ++ Sbjct 189 IHDLIKAVDEWIPTPTREVDKPFLLAIEDTMTITGRGTVVTGRVERGELKVGQEVEIVGL 248 Query 230 NSVYQIVELGIKNPFFEKQ-DVLKAGE 255 + + V GI+ F+K+ D AG+ Sbjct 249 KPIRKAVVTGIE--MFKKELDSAMAGD 273 >gi|12044994|ref|NP_072804.1| translation initiation factor 2 (infB) [Mycoplasma genitalium G-37] Length=619 Score = 60.8 bits (146), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 83/174 (48%), Gaps = 23/174 (13%) Query 10 SIIAHIDHGKSTLSDRLIERSIGFEKRLLQAQMLDTMAIERERGITIKLNAVQLKMAQGN 69 +I+ H+DHGK++L D + + ++ + GIT K+ A Q+K Q N Sbjct 126 TIMGHVDHGKTSLLDTIRKTNV---------------TAKEFGGITQKIGAYQVKNHQ-N 169 Query 70 QQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYLALENNLEIIP 129 + F +DTPGH FT +R + V+L+V A GI+ QT A N II Sbjct 170 KTITF--IDTPGHEAFTLMRARGAKVTDIVVLVVAADDGIKKQTEEAISHAKSANTPIIV 227 Query 130 VINKVDMESADVEKTKQAFHQLLGV-----DPNTIPLVSAKTGLGIDQLITTII 178 INK+D +A+ + Q ++ V + SA TG GI++L+ I+ Sbjct 228 FINKMDKPTANPDLVIQQLNKFDLVPEAWGGKTIFVMGSALTGQGINELLDNIL 281 Lambda K H a alpha 0.320 0.138 0.393 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 70652274 Query= gi|13508019|ref|NP_109968.1| similar to single stranded RNA(DNA) processing enzymes [Mycoplasma pneumoniae M129] Length=569 Score E Sequences producing significant alignments: (Bits) Value gi|12044991|ref|NP_072801.1| hypothetical protein MG139 [Mycoplas... 1040 0.0 gi|12045283|ref|NP_073094.1| hypothetical protein MG423 [Mycoplas... 154 4e-42 >gi|12044991|ref|NP_072801.1| hypothetical protein MG139 [Mycoplasma genitalium G-37] Length=569 Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/569 (88%), Positives = 547/569 (96%), Gaps = 0/569 (0%) Query 1 MIKDFDPSEFVGKTPTKIFAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGIDGI 60 MIKDF+P +F+GK PTKI+AFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGI+GI Sbjct 1 MIKDFNPGDFIGKKPTKIYAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGINGI 60 Query 61 IPSFEYLIENQAKVKALFITHGHEDHIGGVPYLLKQVDVPVIYAPRIAASLILKKVNEHK 120 IPSFE+LIENQ+KVKALFITHGHEDHIGGVPYLLKQVD+PVIYAPRIAASLILKKVNEHK Sbjct 61 IPSFEHLIENQSKVKALFITHGHEDHIGGVPYLLKQVDIPVIYAPRIAASLILKKVNEHK 120 Query 121 DAKLNKVVVYDDFSNFETKHFKIDFYRVNHSIPDAFGVCVQTPNGNIVESGDFRFDFAAG 180 DAKLNK+V +DDFS F+TKHFKIDFYRVNHSIPDAFG+CVQTPNGNIV+SGD+RFDFAAG Sbjct 121 DAKLNKIVTFDDFSEFQTKHFKIDFYRVNHSIPDAFGICVQTPNGNIVQSGDYRFDFAAG 180 Query 181 GEMLDVHKVVKIAERNVHVFMCETTNAEIPGFSQSEKLIYRNINKIIKEARGRVILTTFA 240 EMLDVHKVVKIAERNVHVFM E+TNAE+PGFSQSEKLIYRNI KI+KEARGRVILTTFA Sbjct 181 SEMLDVHKVVKIAERNVHVFMSESTNAEVPGFSQSEKLIYRNIQKILKEARGRVILTTFA 240 Query 241 SNITRINEIIEIAVNNKRKVCLLGKSMDVNVNISRKIGLMDIDSNDIVEVRDIKNYPDRS 300 SNITRINEIIEIA+NNKRK+CLLGKSMDVNVNISRKIGLM IDSNDIVEVRDIKNYPDR+ Sbjct 241 SNITRINEIIEIALNNKRKICLLGKSMDVNVNISRKIGLMAIDSNDIVEVRDIKNYPDRN 300 Query 301 ILILCTGSQGEDSAALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKYG 360 ILILCTGSQGE++AALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSK+G Sbjct 301 ILILCTGSQGEEAAALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKFG 360 Query 361 VTIFENSPNMKLHASGHATQQELQLMLNLVFPRYLIPIHGEYKMMRTIKNIAQECGINGD 420 V I+ENS +KLHASGHATQQELQLMLNL+FP+YLIPIHGE+KMMRTIKNIA ECGI + Sbjct 361 VAIYENSSQLKLHASGHATQQELQLMLNLMFPKYLIPIHGEFKMMRTIKNIANECGIKSE 420 Query 421 DVGLLANGQVMYLIDGKLYYSGEVINADPIYIESRNSSPDLARVIKQRQILSREGMFAVI 480 DV LL+NGQVMYLID +LYYS E+INADPIYIES NSSPDLAR+IKQRQILSR+GMFAVI Sbjct 421 DVALLSNGQVMYLIDEELYYSNEIINADPIYIESHNSSPDLARIIKQRQILSRDGMFAVI 480 Query 481 VVFDKNNNILGMPTLITRGCFFALDSSPLMTKITHSIKRGLENVIQNKRFNTREQMIKEL 540 VVFDKNNNI+G+PTLITRGCFFALDS+PLMTKI HS+KR LE+VIQ+K+FN+ EQ+ KEL Sbjct 481 VVFDKNNNIIGIPTLITRGCFFALDSNPLMTKIAHSVKRTLESVIQSKKFNSHEQLTKEL 540 Query 541 KRVCKETVSYFIWKNKSRNPLISTVLSWV 569 KRVCKETVSYFIWKNK+RNPLISTVLSW+ Sbjct 541 KRVCKETVSYFIWKNKNRNPLISTVLSWI 569 >gi|12045283|ref|NP_073094.1| hypothetical protein MG423 [Mycoplasma genitalium G-37] Length=561 Score = 154 bits (388), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 139/566 (25%), Positives = 268/566 (47%), Gaps = 25/566 (4%) Query 17 KIFAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGIDGIIPSFEYLIENQAKVKA 76 K FA GG E GKN Y +E D+++ I + G + +LG+ IIP F ++ ENQA+VK Sbjct 5 KFFALGGQDERGKNCYVLEIDNDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQARVKG 64 Query 77 LFITHGHEDHIGGVPYLLKQVDVPVIYAPRIAASLILKKVNEHK-DAKLNKVVVYD--DF 133 +FI + +++G + +L V IY I AS+I K+NE+K + +K+ +++ Sbjct 65 IFIGNAITENLGSLEFLFHTVGFFPIYTSSIGASIIKSKINENKLNIARDKLEIHELKPL 124 Query 134 SNFETKHFKIDFYRVNHSIPDAFGVCVQTPNGNIVESGDFRF----DFAAGGEMLDVHKV 189 E + I ++V+ S+P +FG + T NG IV DF + A ++ + + Sbjct 125 ETIEISNHSITPFKVSSSLPSSFGFALNTDNGYIVFIDDFIVLNDKNIAFENQLNQI--I 182 Query 190 VKIAERNVHVFMCETTNAEIPGFSQSEKLIYRNINKIIKEARGRVILTTFASNITRINEI 249 K+++ + + GF+ + +N+II A+GR+ + + SN + + Sbjct 183 PKLSDNTLLLITGVGLVGRNSGFTTPKHKSLEQLNRIITPAKGRIFVACYDSNAYSVMTL 242 Query 250 IEIAVNNKRKVCLLGKSMDVNVNISRKIGLMDIDSNDIVEVRDIKNYPDRSILILCTGSQ 309 +IA R + +S N + L + + + + +I N + SI++L T Sbjct 243 AQIARMQNRPFIIYSQSFVHLFNTIVRQKLFNNTHLNTISIEEINNSTN-SIVVL-TSPP 300 Query 310 GEDSAALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKYGVTIFENSPN 369 + A L + + + + +DT I + + G +L+++++ V+ + Sbjct 301 DKLYAKLFKIGMNEDERIRYRKSDTFIFMTPKVAGYEEIEAQILDDIARNEVSYYNLGRE 360 Query 370 MKLHASGHATQQELQLMLNLVFPRYLIPIHGEYKMMRTIKNIAQECGINGDDVGLLANGQ 429 + S A+ ++++ +++ + P+Y+IP G Y+ + ++ G + + +L NG+ Sbjct 361 I---LSIQASDEDMKFLVSSLKPKYIIPTGGLYRDFINFTMVLKQAGAEQNQILILFNGE 417 Query 430 VMYLIDGKLYYSGEVINADPIYIESRNSSPDLARVIKQRQILSREGMFAVIVVFD-KNNN 488 V+ + + KL + +P ++S A ++ +R +S G+ +I+ FD K + Sbjct 418 VLTIENKKLDSKKNELKLNPKCVDSAGLQEIGASIMFERDQMSESGVVIIIIYFDQKKSE 477 Query 489 ILGMPTLITRGCFFAL-DSSPLMTKITHSIKRGLENVIQNKRFNTREQMI-----KELKR 542 L T G + + L TK+ IK+ + ++ K F T ++ I KELK Sbjct 478 FLNEITYSFLGVSLDVPEKDKLKTKMEELIKKQINDI---KDFTTIKKRIGKEISKELKV 534 Query 543 VCKETVSYFIWKNKSRNPLI-STVLS 567 K V K S+ PLI ST++S Sbjct 535 SIKRAVMNLFTKMTSKAPLILSTIIS 560 Lambda K H a alpha 0.321 0.138 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 68976726 Query= gi|13508020|ref|NP_109969.1| hypothetical protein MPN281 [Mycoplasma pneumoniae M129] Length=377 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 421 1e-143 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 307 3e-100 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 421 bits (1081), Expect = 1e-143, Method: Compositional matrix adjust. Identities = 213/381 (56%), Positives = 270/381 (71%), Gaps = 10/381 (3%) Query 1 MKFKYGTVVLGSFLGLSVVLAACGARGKFDQFDDGKIKLASSLTSKAAANALQTIIEKYN 60 MK K V S G S +L AC +FDQ DDGKIKLASSLTSK AA AL+T+++KYN Sbjct 1 MKLKGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYN 60 Query 61 IVKSGKDYPIEITQIAGGYDGGRTDLQTRVSVKDKTNFYNLILNYPDLVSVLARSGMELL 120 K DYPIEI QIAGGYDGG+ D+QT+VS KDK NFYNLILNYP++VS L+RS M L Sbjct 61 DTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALN 120 Query 121 FDKVNVDKLEPNFLKFNEQISGVAKSGNYGIPVSLSTDILVLNGPVLHYILNSAKKE--E 178 FD VNVDKL PNFL FN +I G+ G Y IP+S+STD++V+NGPVLHYILNSA+KE Sbjct 121 FDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTP 180 Query 179 ANSQVKSQIKTSQIQAKGSLTIDTDENTKSLWEKIQNSAKANGETNQKGRKAAKSNKTAL 238 ++ V++ + + + KG+L I D T LW+ IQ +A+ N K +K K + ++ Sbjct 181 TSTTVQATVSSRSAEKKGTLEIANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSS 240 Query 239 VQLKNGADTTTNEENKDTKTSDDKVKQTWGDYVEKDDGLKNYTFRASVFENWHDFLDFST 298 +T KDT SD+K+K+ WG+Y E D GLKN+TF+AS+FENW++ LDF+T Sbjct 241 STTSTTGET------KDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDFAT 294 Query 299 RVAKSFTEKVSNITNKKGTDIQGVLGVDSSPNVLFASVFAAGGGNYENFFYKL--KDGRA 356 R+A SF EKV NITNK G D+QGVLGVDSS N L+A+VFAAG NY+NFF+ + + G A Sbjct 295 RIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYA 354 Query 357 DFSNFKNKGSSYQNLQSVFKD 377 D+SNF NK SSYQNL+SV+ D Sbjct 355 DYSNFLNKDSSYQNLESVYND 375 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 307 bits (786), Expect = 3e-100, Method: Compositional matrix adjust. Identities = 172/381 (45%), Positives = 244/381 (64%), Gaps = 31/381 (8%) Query 1 MKFKY---GTVVLGSFLGLSVVLAACGARGKFDQFDDGKIKLASSLTSKAAANALQTIIE 57 MKFK + VLG +++ AC A +FDQ DDGKIKLA+ +TS +A+ +L TII Sbjct 1 MKFKLFFLSSSVLGP---IALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIIS 56 Query 58 KYNIVKSGKDYPIEITQI--AGGYDGGRTDLQTRVSVKDKTNFYNLILNYPDLVSVLARS 115 KYN K DYP+E+ + G Y G+ DLQ ++ KDK NFYNL NY D+VS+L+RS Sbjct 57 KYNSQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRS 116 Query 116 GMELLFDKVNVDKLEPNFLKFNEQISGVAKSGNYGIPVSLSTDILVLNGPVLHYILNSAK 175 MEL FD V+ +P+FL FN IS V + Y +P ++S ++LVLNGPVLHYIL+SAK Sbjct 117 QMELSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAK 176 Query 176 KEEANSQVKSQIKTSQIQAKGSLTIDTDENTKSLWEKIQNSAKANGETNQKGRKAAKSNK 235 K ++N+ + + S KG++ + +D T SLW K++ +AK N +TN+ + KSN Sbjct 177 K-DSNTTLSTH-SASNNSNKGTMVVASDSETSSLWTKLEAAAKMNAQTNE--TQVLKSNS 232 Query 236 TALVQLKNGADTTTNEENKDTKTSDDKVKQTWGDYVEKDDGLKNYTFRASVFENWHDFLD 295 + E+ T+ SD ++K+ WGDY E D GLKNYTF+ASVF NW D D Sbjct 233 S---------------ESNQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLND 277 Query 296 FSTRVAKSFTEKVSNITNKKGTDIQGVLGVDSSPNVLFASVFAAGGGNYENFFYKLKDGR 355 F+TR+AKSFT+ + T KKG ++Q V G+ S N L+ ++FA+G +Y NF + +K+ R Sbjct 278 FATRIAKSFTKLQT--TTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQR 335 Query 356 ADFSNFKNKGSS-YQNLQSVF 375 +FSNF NK S+ +QNL+++F Sbjct 336 INFSNFFNKSSTAFQNLKTIF 356 Lambda K H a alpha 0.312 0.130 0.360 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 43029705 Query= gi|13508021|ref|NP_109970.1| hypothetical protein MPN282 [Mycoplasma pneumoniae M129] Length=166 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 161 1e-48 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 96.7 1e-25 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 161 bits (408), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 86/166 (52%), Positives = 108/166 (65%), Gaps = 20/166 (12%) Query 2 KTIYIYKGSIPEDKKKGDNAIWVTEKKIIDALEKAANSNGESTQSNPKTIALQAAKKETK 61 K I +YKGSIP K++G +AI ++ +I+ LE QA +K T Sbjct 462 KDINLYKGSIPSGKQQGVDAILISNPNLINILE-------------------QAKQKNTA 502 Query 62 K-SNKKESKTIGYTTTGYVNADGKHIFDTDRINNERFDRKIIIGATLETLDQSSTLQSGE 120 + S +K IGYTTT VN D ++IF ++NNE+F RKII+ AT ETLDQS TLQS E Sbjct 503 QGSESTTNKIIGYTTTANVNVDNQNIFSVSKLNNEQFQRKIIVNATEETLDQSQTLQSNE 562 Query 121 AIVLPAPGKYKSSDQKTVMTAQGPKIIGIHANAKENEETQKFVNWF 166 +IVLP PGKYKS+D+ VM QGP +IGIHAN KEN ET+KFVNWF Sbjct 563 SIVLPMPGKYKSTDKNKVMITQGPNLIGIHANEKENIETKKFVNWF 608 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 96.7 bits (239), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/167 (38%), Positives = 99/167 (59%), Gaps = 22/167 (13%) Query 2 KTIYIYKGSIPEDKKKGDNAIWVTEKKIIDALEKAANSNGESTQSNPKTIALQ-AAKKET 60 K + +Y+ + +K+ G +A+ + ++ +I+ L K++ Q +AK + Sbjct 449 KQVSLYEKQVDSNKQIGVDALLIKDETLINHL---------------KSLKSQVSAKSAS 493 Query 61 KKSNKKESKT-IGYTTTGYVNADGKHIFDTDRINNERFDRKIIIGATLETLDQSSTLQSG 119 + S K++KT + +TT VNAD K IFD ++N + KIII AT T + STLQ Sbjct 494 ETSQTKQNKTFLAFTT---VNADQKAIFDVGKLNGKT--AKIIINATETTNAKISTLQEK 548 Query 120 EAIVLPAPGKYKSSDQKTVMTAQGPKIIGIHANAKENEETQKFVNWF 166 EAIVL AP +++S+D + QGP +IGIHAN +E+ ET+KFVNW+ Sbjct 549 EAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFVNWY 595 Lambda K H a alpha 0.307 0.125 0.344 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14785206 Query= gi|13508022|ref|NP_109971.1| hypothetical protein MPN283 [Mycoplasma pneumoniae M129] Length=115 ***** No hits found ***** Lambda K H a alpha 0.310 0.131 0.352 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8078895 Query= gi|13508023|ref|NP_109972.1| hypothetical protein MPN284 [Mycoplasma pneumoniae M129] Length=794 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 744 0.0 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 518 2e-176 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/826 (51%), Positives = 538/826 (65%), Gaps = 99/826 (12%) Query 1 MKLKYGTIIFSGLLGVSAILAACGARGKFDQVDDGKIVLASSLTSKGAANALQTIVKKYN 60 MKLK + + G S +L AC +FDQVDDGKI LASSLTSK AA AL+T+VKKYN Sbjct 1 MKLKGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYN 60 Query 61 EVKNIDDYPIEIIQIAGGYDGGRGNLQTKLSVKDKNSFYNLILNYPDVVSVLGRVGMELP 120 + K+ DYPIEI+QIAGGYDGG+ ++QTK+S KDKN+FYNLILNYP++VS L R M L Sbjct 61 DTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALN 120 Query 121 FDKVRTDKLSPRFLDFNKRISAISKQGIYGIPVSLSTEVLVLNGPVLHYILSSAK--GSS 178 FD V DKL P FL FN RI I GIY IP+S+ST+++V+NGPVLHYIL+SA+ G+ Sbjct 121 FDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTP 180 Query 179 GKTQVSQTSSGSNQQKTLQKPLKIDTSDSSTSSLWTQIENAAKNNGKKANNSKSNRRSTD 238 T V T S + +K + L+I +DS T+ LW I+ A+NN + + + + Sbjct 181 TSTTVQATVSSRSAEK--KGTLEI-ANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSS 237 Query 239 QSTQTHNDQG---DASESDKKIKESWGDYEEVDGGLKGFTFKASIFDNWHDLLDFSTRAA 295 S+ T + G D ++SD KIKE WG+Y+EVDGGLK FTFKASIF+NW++ LDF+TR A Sbjct 238 SSSSTTSTTGETKDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLDFATRIA 297 Query 296 KSF-KKIKDNNTKKGTDIQGILGVDSSANSLFTSVFAAGNGDYDNFFYKV--ANGRADFS 352 SF +K+K+ K G D+QG+LGVDSS+N+L+ +VFAAG +YDNFF+ + G AD+S Sbjct 298 NSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYADYS 357 Query 353 NFKNRGSSFQNLQSVFNDYKGLIDQNGLFVNKGGSYSSNFQKFHQLAYSISSTSGFYYSF 412 NF N+ SS+QNL+SV+ND+ LI NGLFVN+GGSYSSNF+KFHQLA+S+SS+ G+ Y F Sbjct 358 NFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSGGYSYYF 417 Query 413 AGNSAKRLKFGDNSFIEYPQYTVPIKAPSKNGDGNSTNSNSDLLGTFTLSSVKKSTDKSK 472 A ++AKRLKF N IEYP +T I+AP NS+ + S+LLGTF LS Sbjct 418 AKDNAKRLKFS-NYAIEYPSFTQTIQAP------NSSETESNLLGTFKLS---------- 460 Query 473 SDSQQNQGKKVEGTPNQGKKAEGAQNQGKKENNSTTIEIYKNKIPDGKNAGKDAILIKDN 532 I +YK IP GK G DAILI + Sbjct 461 ---------------------------------EKDINLYKGSIPSGKQQGVDAILISNP 487 Query 533 NLIKQLEDAAKKNGAESNQKQGGESNVQKEQIIGYTTTGNVREDGNHIFRVDKINDEQYD 592 NLI LE A +KN A QG ES K IIGYTTT NV D +IF V K+N+EQ+ Sbjct 488 NLINILEQAKQKNTA-----QGSESTTNK--IIGYTTTANVNVDNQNIFSVSKLNNEQFQ 540 Query 593 RKIIVGVTVETLEQSSTLQSEEAIVLAAPGKYKSTDKKKVTITQGPNIIGIHANEKENAE 652 RKIIV T ETL+QS TLQS E+IVL PGKYKSTDK KV ITQGPN+IGIHANEKEN E Sbjct 541 RKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIGIHANEKENIE 600 Query 653 TQKFVDWFLNTEV-DWPAKENSSNKQDQQNSTKKQTAAEFFVESASYILPLKEIFENKEK 711 T+KFV+WFLN + DW NS+N+Q + T K TAAE+F + ASYILPLKE F Sbjct 601 TKKFVNWFLNQSITDW----NSNNQQKNSDQTTK-TAAEYFTDQASYILPLKEKFNKSSD 655 Query 712 KE-------------------------NTSNSDKNKSSSQRKNTYAEKALELFQQISKDE 746 E +T++S K ++ NT+ KALELFQQ + +E Sbjct 656 LELKGSSSSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNTFTAKALELFQQAANNE 715 Query 747 IVSYSDPSDFRSGKFRDGIGSNFNAAVSSKADFNKFVKGFIATLGS 792 I+ +SDPSDFR+G FR+ I S+FNAAV+SK FN+FV+ FI +LGS Sbjct 716 IIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLGS 761 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 518 bits (1335), Expect = 2e-176, Method: Compositional matrix adjust. Identities = 322/807 (40%), Positives = 459/807 (57%), Gaps = 122/807 (15%) Query 1 MKLKYGTIIFSGLLGVSAILAACGARGKFDQVDDGKIVLASSLTSKGAANALQTIVKKYN 60 MK K + S L ++ AC A +FDQVDDGKI LA+ +TS A+ +L TI+ KYN Sbjct 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKYN 59 Query 61 EVKNIDDYPIEIIQI--AGGYDGGRGNLQTKLSVKDKNSFYNLILNYPDVVSVLGRVGME 118 K+ +DYP+E++ + G Y G+ +LQ KL KDKN+FYNL NY DVVS+L R ME Sbjct 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query 119 LPFDKVRTDKLSPRFLDFNKRISAISKQGIYGIPVSLSTEVLVLNGPVLHYILSSAKGSS 178 L FD V T P FL FN IS ++ IY +P ++S EVLVLNGPVLHYILSSAK S Sbjct 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDS 179 Query 179 GKTQVSQTSSGSNQQKTLQKPLKIDTSDSSTSSLWTQIENAAKNNGKKANNSKSNRRSTD 238 T + ++S ++ + T+ + SDS TSSLWT++E AAK N + N ++ + ++ Sbjct 180 NTTLSTHSASNNSNKGTM-----VVASDSETSSLWTKLEAAAKMNA-QTNETQVLKSNSS 233 Query 239 QSTQTHNDQGDASESDKKIKESWGDYEEVDGGLKGFTFKASIFDNWHDLLDFSTRAAKSF 298 +S QT SD +IK+ WGDY+EVDGGLK +TFKAS+F+NW DL DF+TR AKSF Sbjct 234 ESNQTQ-------ASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDLNDFATRIAKSF 286 Query 299 KKIKDNNTKKGTDIQGILGVDSSANSLFTSVFAAGNGDYDNFFYKVANGRADFSNFKNRG 358 K++ TKKG ++Q + G+ S N+L+T++FA+G DY+NF + + N R +FSNF N+ Sbjct 287 TKLQ-TTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRINFSNFFNKS 345 Query 359 SS-FQNLQSVFNDYKGLIDQNGLFVNKGGSYSSN-FQKFHQLAYSISSTSGFYYSFAGNS 416 S+ FQNL+++FN +K LIDQNGL N + N + KF+QLA+ SST+ F YSFA +S Sbjct 346 STAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTARFPYSFASDS 405 Query 417 AKRLKFGDNSFIEYPQ----YTVPIKAPSKNGDGNSTNSNSDLLGTFTLSSVKKSTDKSK 472 KRL D + IE + V + + S N NS+L+GT +L Sbjct 406 VKRLIVNDKT-IENKNNKSVFEVNLSSDSDN--------NSNLIGTVSLE---------- 446 Query 473 SDSQQNQGKKVEGTPNQGKKAEGAQNQGKKENNSTTIEIYKNKIPDGKNAGKDAILIKDN 532 NS + +Y+ ++ K G DA+LIKD Sbjct 447 --------------------------------NSKQVSLYEKQVDSNKQIGVDALLIKDE 474 Query 533 NLIKQLED----AAKKNGAESNQKQGGESNVQKEQIIGYTTTGNVREDGNHIFRVDKIND 588 LI L+ + K+ +E++Q + Q + + +TT V D IF V K+N Sbjct 475 TLINHLKSLKSQVSAKSASETSQTK------QNKTFLAFTT---VNADQKAIFDVGKLNG 525 Query 589 EQYDRKIIVGVTVETLEQSSTLQSEEAIVLAAPGKYKSTDKKKVTITQGPNIIGIHANEK 648 + KII+ T T + STLQ +EAIVL AP +++STD + + QGP++IGIHANE+ Sbjct 526 KT--AKIIINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANER 583 Query 649 ENAETQKFVDWFLNTEVDWPAKENSSNKQDQQNSTKKQTAAEFFVESASYILPLKEIFEN 708 E+ ET+KFV+W+LNT+V W ++NS K T AE+ + ASY+LP K N Sbjct 584 EDIETKKFVNWYLNTKVQW-----------EENSIK--TPAEYVADKASYLLPFKNRLNN 630 Query 709 KEKKENTSNSDKNKSSSQRKNTYAEKALELFQQISKDEIVSYSDPSDFRSGKFRDGIGSN 768 N+Y E Q + + +++P+DF S K RDG+ SN Sbjct 631 -------------------TNSYNEFVKTAVSQFADKNVTKFAEPADFLSNKVRDGVKSN 671 Query 769 FNAAVSSKA-DFNKFVKGFIATLGSEI 794 NAA+++ + DF+ F+ LGS++ Sbjct 672 LNAAINNHSIDFDSFINDLTDYLGSDV 698 Lambda K H a alpha 0.309 0.127 0.349 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 98934732 Query= gi|13508024|ref|NP_109973.1| type I restriction enzyme ecokI specificity protein [Mycoplasma pneumoniae M129] Length=306 ***** No hits found ***** Lambda K H a alpha 0.316 0.133 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33523564 Query= gi|13508025|ref|NP_109974.1| hypothetical protein MPN286 [Mycoplasma pneumoniae M129] Length=465 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 191 2e-54 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 191 bits (485), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 190/368 (52%), Gaps = 75/368 (20%) Query 1 MLDYIPWIGNGHRYGNDHRGSNSSTSGVTTQGQQSQNASGTEPASTFSNVGVGLKANVQG 60 LD++PWIGNG + S +AS + P TFSN+ VG+K+ + Sbjct 764 FLDFLPWIGNGKP--------------FSNSPSPSTSASSSTPLPTFSNINVGVKSMITQ 809 Query 61 TLGGSQTTTTGKDIPKWPTLDQANLQLWTGAGWRNDKASSGQSDENHTKFTSATGSGQQG 120 L T +W + + +WTGAG+R A+ +N F Q Sbjct 810 HLNKENT--------RWVFIPNFSPDIWTGAGYRVQSANQ----KNGIPFE------QVK 851 Query 121 SSSGTTNSAGNPDSLKQDKVDKSGDSVTVAETTSGDNLTNYTNLPPNLTPTADWPNALSF 180 S+ +T N D +KV SG S T Y LP +++PT+DW NAL+F Sbjct 852 PSNNSTPFDPNSDD---NKVTPSGGS---------SKPTTYPALPNSISPTSDWINALTF 899 Query 181 TNKNNAQRAQLFLRALLGSIPVLVNKSGQDDSNKFQATDQKWSYTELKSDQTKLNLPAYG 240 TNKNN QR QL LR+LLG+IPVL+NKSG + + ++QKW TE NLP +G Sbjct 900 TNKNNPQRNQLLLRSLLGTIPVLINKSGDSNDQFNKDSEQKWDKTETNEG----NLPGFG 955 Query 241 EVNGLLNPALVEVYGLSSTQGSSTGAGGAGGNTGGDTNTQTYARPGIGFKLPSTDSESSK 300 EVNGL N AL+ YG T +ST P IGFK + S SS Sbjct 956 EVNGLYNAALLHTYGFFGTNTNSTD-------------------PKIGFK--ADSSSSSS 994 Query 301 ATLITPGLAWTAQDVGNLVV-SGTSLSFQLGGWLVTFTDFIKPRSGYLGLQLTGLDANDS 359 +TL+ GL WT+QDVGNLVV + TS FQLGGW +TFTDFI+PR+GYLG+ L+ L Sbjct 995 STLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYLGITLSSL----- 1049 Query 360 DQRELIWA 367 + +IWA Sbjct 1050 QDQTIIWA 1057 Lambda K H a alpha 0.310 0.130 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 54784183 Query= gi|13508026|ref|NP_109975.1| hypothetical protein MPN287 [Mycoplasma pneumoniae M129] Length=118 ***** No hits found ***** Lambda K H a alpha 0.310 0.129 0.333 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8519562 Query= gi|13508027|ref|NP_109976.1| hypothetical protein MPN288 [Mycoplasma pneumoniae M129] Length=787 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 727 0.0 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 511 1e-173 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/819 (51%), Positives = 534/819 (65%), Gaps = 92/819 (11%) Query 1 MKFK-YCAIFFSGFLGLSAILAACGARGKFDQVDDGKIKLAFSLTSKSASNALQAIVKKY 59 MK K + A+ S F G S +L AC +FDQVDDGKIKLA SLTSK A+ AL+ +VKKY Sbjct 1 MKLKGFLAVGVSVF-GFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKY 59 Query 60 NEVKKPGDYHIEITQIAGGYDGGRSDLQTRVNVKDTTNFYNLILNYPDLVSTLGRVGMEL 119 N+ K PGDY IEI QIAGGYDGG+ D+QT+V+ KD NFYNLILNYP++VSTL R M L Sbjct 60 NDTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMAL 119 Query 120 LFDKVNTDKLSDRFLDFNKRISAISKPGIYGIPVSLSTEVLSINGPVLHYILKSAKGDSD 179 FD VN DKL FL FN RI I GIY IP+S+ST+++ INGPVLHYIL SA+ + Sbjct 120 NFDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGT 179 Query 180 NVKVSQRTGETTQKSKVTNPLKINTQNDPATKDLWEKIEASAKANGKSNKDGQTKGKKKV 239 + + +++ ++ L+I ND T LW+ I+ +A ++N + TK +K+V Sbjct 180 PTSTTVQATVSSRSAEKKGTLEI--ANDSETTKLWQNIQTTA----QNNSNETTKEQKQV 233 Query 240 EKSSSSSLVNLKQSTDQTTTDDGSQKSDNKIKESWGEYQEVDGGLKNFEFKASIFENWHD 299 ++SSSSS + TT KSDNKIKE WGEYQEVDGGLKNF FKASIFENW++ Sbjct 234 KRSSSSSSTTSTTGETKDTT-----KSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNE 288 Query 300 LLDFSTRVAKSFTN-VKGKDIKKGTDIQGVLGVDSTPNSLFTSVFAAGGGDYNNFFYKIE 358 LDF+TR+A SF VK K G D+QGVLGVDS+ N+L+ +VFAAG +Y+NFF+ I+ Sbjct 289 TLDFATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNID 348 Query 359 --NGRADFSNFKNKGTSYQNLQKVFGDFKGLIDKNGIFVNKGGSYSSNFQKFHQLAYSIS 416 G AD+SNF NK +SYQNL+ V+ DF LI NG+FVN+GGSYSSNF+KFHQLA+S+S Sbjct 349 KRTGYADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVS 408 Query 417 STSGFFYSFAGNSAKRLKFGDNFIEFPRFTQEIKAPSTENGGQSNLLGTFEVKDSSKSKE 476 S+ G+ Y FA ++AKRLKF + IE+P FTQ I+AP++ +SNLLGTF++ + Sbjct 409 SSGGYSYYFAKDNAKRLKFSNYAIEYPSFTQTIQAPNSSE-TESNLLGTFKLSE------ 461 Query 477 VKKTNRKEDGAQNQGKKESDKKTIYLYKSQIPSDKTEGENAILIKEQNVINQLEQAAKKD 536 K I LYK IPS K +G +AILI N+IN LEQA +K+ Sbjct 462 ---------------------KDINLYKGSIPSGKQQGVDAILISNPNLINILEQAKQKN 500 Query 537 --EKGETVTNKVASLETKAANAKKDSSKTIIGYTTTDNVHEDGKNIFKINKLKTEDYDRK 594 + E+ TNK IIGYTTT NV+ D +NIF ++KL E + RK Sbjct 501 TAQGSESTTNK------------------IIGYTTTANVNVDNQNIFSVSKLNNEQFQRK 542 Query 595 IIVGATEEVLEQSSTLQSDEAIVLPAPGKYQSGDAKKVTITQGPNIIGIHANEKENAETQ 654 IIV ATEE L+QS TLQS+E+IVLP PGKY+S D KV ITQGPN+IGIHANEKEN ET+ Sbjct 543 IIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIGIHANEKENIETK 602 Query 655 KFVNWFLNNTES-WEVKN-GKDSSTKQQTAAEFFAESASYILPLKEIFDKD--------- 703 KFVNWFLN + + W N K+S +TAAE+F + ASYILPLKE F+K Sbjct 603 KFVNWFLNQSITDWNSNNQQKNSDQTTKTAAEYFTDQASYILPLKEKFNKSSDLELKGSS 662 Query 704 -----------------NKKATENKDNNTSNKKQANTYAEKALDLFQQISKGDIVSYSDP 746 N +T + +NT+ KAL+LFQQ + +I+ +SDP Sbjct 663 SSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNTFTAKALELFQQAANNEIIPFSDP 722 Query 747 SDFRSGKFRDGIGSNFNAAVSSKADFDRFVKGFIATLGS 785 SDFR+G FR+ I S+FNAAV+SK F++FV+ FI +LGS Sbjct 723 SDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLGS 761 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 511 bits (1315), Expect = 1e-173, Method: Compositional matrix adjust. Identities = 330/796 (41%), Positives = 458/796 (58%), Gaps = 107/796 (13%) Query 1 MKFKYCAIFF--SGFLGLSAILA-ACGARGKFDQVDDGKIKLAFSLTSKSASNALQAIVK 57 MKFK +FF S LG A+ AC A +FDQVDDGKIKLA ++TS SAS +L I+ Sbjct 1 MKFK---LFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLA-TVTSASASGSLTTIIS 56 Query 58 KYNEVKKPGDYHIEITQI--AGGYDGGRSDLQTRVNVKDTTNFYNLILNYPDLVSTLGRV 115 KYN K P DY +E+ + G Y G+ DLQ ++ KD NFYNL NY D+VS L R Sbjct 57 KYNSQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRS 116 Query 116 GMELLFDKVNTDKLSDRFLDFNKRISAISKPGIYGIPVSLSTEVLSINGPVLHYILKSAK 175 MEL FD V+T FL FN IS ++ IY +P ++S EVL +NGPVLHYIL SAK Sbjct 117 QMELSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAK 176 Query 176 GDSDNVKVSQRTGETTQKSKVTNPLKINTQNDPATKDLWEKIEASAKANGKSNKDGQTKG 235 DS+ T T S +N + +D T LW K+EA+AK N ++N Sbjct 177 KDSN------TTLSTHSASNNSNKGTMVVASDSETSSLWTKLEAAAKMNAQTN------- 223 Query 236 KKKVEKSSSSSLVNLKQSTDQTTTDDGSQKSDNKIKESWGEYQEVDGGLKNFEFKASIFE 295 + +V KS+SS ++QT Q SD +IK+ WG+YQEVDGGLKN+ FKAS+F Sbjct 224 ETQVLKSNSS-------ESNQT------QASDTEIKKIWGDYQEVDGGLKNYTFKASVFN 270 Query 296 NWHDLLDFSTRVAKSFTNVKGKDIKKGTDIQGVLGVDSTPNSLFTSVFAAGGGDYNNFFY 355 NW DL DF+TR+AKSFT ++ KKG ++Q V G+ S N+L+T++FA+G DYNNF + Sbjct 271 NWKDLNDFATRIAKSFTKLQTT-TKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLF 329 Query 356 KIENGRADFSNFKNK-GTSYQNLQKVFGDFKGLIDKNGIFVNKGGSYSSN-FQKFHQLAY 413 I+N R +FSNF NK T++QNL+ +F FK LID+NG+ N + N + KF+QLA+ Sbjct 330 NIKNQRINFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAF 389 Query 414 SISSTSGFFYSFAGNSAKRLKFGDNFIEFPRFTQEIKA-PSTENGGQSNLLGTFEVKDSS 472 SST+ F YSFA +S KRL D IE + S+++ SNL+GT +++S Sbjct 390 YTSSTARFPYSFASDSVKRLIVNDKTIENKNNKSVFEVNLSSDSDNNSNLIGTVSLENS- 448 Query 473 KSKEVKKTNRKEDGAQNQGKKESDKKTIYLYKSQIPSDKTEGENAILIKEQNVINQLEQA 532 K + LY+ Q+ S+K G +A+LIK++ +IN L+ Sbjct 449 -------------------------KQVSLYEKQVDSNKQIGVDALLIKDETLINHLKSL 483 Query 533 AKKDEKGETVTNKVASLETKAANAKKDSSKTIIGYTTTDNVHEDGKNIFKINKLKTEDYD 592 + V+ K AS ET ++ +KT + +TT V+ D K IF + KL + Sbjct 484 KSQ------VSAKSAS-ET----SQTKQNKTFLAFTT---VNADQKAIFDVGKLNGK--T 527 Query 593 RKIIVGATEEVLEQSSTLQSDEAIVLPAPGKYQSGDAKKVTITQGPNIIGIHANEKENAE 652 KII+ ATE + STLQ EAIVL AP +++S D + + QGP++IGIHANE+E+ E Sbjct 528 AKIIINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIE 587 Query 653 TQKFVNWFLNNTESWEVKNGKDSSTKQQTAAEFFAESASYILPLKEIFDKDNKKATENKD 712 T+KFVNW+LN WE + K T AE+ A+ ASY+LP K N+ Sbjct 588 TKKFVNWYLNTKVQWEENSIK-------TPAEYVADKASYLLPFK------------NRL 628 Query 713 NNTSNKKQANTYAEKALDLFQQISKGDIVSYSDPSDFRSGKFRDGIGSNFNAAVSSKA-D 771 NNT N+Y E Q + ++ +++P+DF S K RDG+ SN NAA+++ + D Sbjct 629 NNT------NSYNEFVKTAVSQFADKNVTKFAEPADFLSNKVRDGVKSNLNAAINNHSID 682 Query 772 FDRFVKGFIATLGSEI 787 FD F+ LGS++ Sbjct 683 FDSFINDLTDYLGSDV 698 Lambda K H a alpha 0.310 0.129 0.355 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 97967493 Query= gi|13508028|ref|NP_109977.1| this protein specifications means only that it is a type I restriction with enzyme ecokI specificity protein [Mycoplasma pneumoniae M129] Length=187 ***** No hits found ***** Lambda K H a alpha 0.318 0.135 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17625218 Query= gi|13508029|ref|NP_109978.1| hypothetical protein MPN290 [Mycoplasma pneumoniae M129] Length=145 ***** No hits found ***** Lambda K H a alpha 0.323 0.138 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11925834 Query= gi|13508030|ref|NP_109979.1| hypothetical protein MPN291 [Mycoplasma pneumoniae M129] Length=196 Score E Sequences producing significant alignments: (Bits) Value gi|12045060|ref|NP_072870.1| hypothetical protein MG208 [Mycoplas... 285 5e-101 >gi|12045060|ref|NP_072870.1| hypothetical protein MG208 [Mycoplasma genitalium G-37] Length=196 Score = 285 bits (729), Expect = 5e-101, Method: Compositional matrix adjust. Identities = 130/196 (66%), Positives = 167/196 (85%), Gaps = 0/196 (0%) Query 1 MRFFNKYKLFLDCAYKHLNIVLLDFKTNTVVDQLTIPVQQNLTELAVYHLEKLLKKNKVR 60 M F +KYKLFLDCAYK LNI++L+ KTN VVD+L+I V+QNLTELAVY+LE +L KNK++ Sbjct 1 MFFLSKYKLFLDCAYKTLNIIILEMKTNAVVDELSIGVEQNLTELAVYYLETMLTKNKLK 60 Query 61 NNTVRQFYVTTGPGSFTGQRVGAIIAKTWCTVNPNCQLFALNSLRLQIPYGCGISKISAG 120 ++++QFYVT GPGSFTGQR+ IIAK+WC + P+C+L+ALNSLR QIPY GISKIS G Sbjct 61 KSSIKQFYVTIGPGSFTGQRIATIIAKSWCLLYPSCELYALNSLRFQIPYEHGISKISCG 120 Query 121 NEKNYCGLFTETTSEIALLAKPDFVKLCKANTELPVYENFENIDSIEELFLNNIERFELV 180 N++NYCGL+++TTSEI L++K DFVKLCKAN ELP+YENFENI+S +L L+NI+ FE + Sbjct 121 NDQNYCGLYSQTTSEIKLISKADFVKLCKANNELPMYENFENIESYSKLLLSNIDHFERI 180 Query 181 ENPQNLELLYLKDPVN 196 E+P L+ +YLKDPVN Sbjct 181 EDPLTLQPIYLKDPVN 196 Lambda K H a alpha 0.321 0.138 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 18718050 Query= gi|13508031|ref|NP_109980.1| similar to RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D [Mycoplasma pneumoniae M129] Length=309 Score E Sequences producing significant alignments: (Bits) Value gi|12045061|ref|NP_072871.1| sfhB protein, putative [Mycoplasma g... 353 2e-124 gi|12045231|ref|NP_073042.1| hypothetical protein MG370 [Mycoplas... 85.5 7e-21 >gi|12045061|ref|NP_072871.1| sfhB protein, putative [Mycoplasma genitalium G-37] Length=308 Score = 353 bits (906), Expect = 2e-124, Method: Compositional matrix adjust. Identities = 185/309 (60%), Positives = 238/309 (77%), Gaps = 1/309 (0%) Query 1 MEQTFSVTTAQRLDTFLATLLNLSRVKVAKLIVDGLVSVNGKKITKNGWLVQPEDRVHVN 60 M+Q F VTT +RLD+ LA+LLNLSRVKV KLI++G + VN K KN +V +D + V Sbjct 1 MKQCFVVTTTKRLDSLLASLLNLSRVKVVKLIMNGQIKVNEKLTFKNSLIVAKDDVIKVE 60 Query 61 WSEELFEKVPVEVQPYDFPLDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHCN 120 +E V+PY+ L++L+ED+ +MV+NKP+GL++HPT+FNE SLL A +FH N Sbjct 61 IHDETTSDFITSVEPYNLKLEVLFEDKDLMVINKPSGLLTHPTTFNEKASLLAACIFHNN 120 Query 121 HQPVFLVHRLDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLALVHFPLDSLSGTISA 180 PV+LVHRLDRDTSG I++ KNQ+SLL+LQ QLQ R +KRYY+ALVHFP ++L+G+I+A Sbjct 121 KNPVYLVHRLDRDTSGAIVVCKNQASLLNLQNQLQNRTLKRYYVALVHFPFNALTGSINA 180 Query 181 PLERVGNNKVMWKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQIRVHLQFIK 240 PL RV NNKVM+K+ ++ KAK A TKF V+NQNEKAALI ELLTGRTHQIRVHL+FI+ Sbjct 181 PLARVNNNKVMFKIAQTA-KAKQAITKFKVINQNEKAALISLELLTGRTHQIRVHLKFIQ 239 Query 241 HPVYNDPLYGLKSEQATEYGQYLHAQQISFIHPTLNKEMGFEAQLDKTFSDKLDNLNLKI 300 HPVYNDPLYG+KSE+ YGQ+LHA +I FIHPTLNK M F A L+ FS KL +LNL + Sbjct 240 HPVYNDPLYGIKSEKKDSYGQFLHANRICFIHPTLNKPMDFHAPLEPKFSTKLKSLNLSL 299 Query 301 ANSLYALFQ 309 + L+ LF+ Sbjct 300 TDPLHVLFK 308 >gi|12045231|ref|NP_073042.1| hypothetical protein MG370 [Mycoplasma genitalium G-37] Length=323 Score = 85.5 bits (210), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 64/207 (31%), Positives = 99/207 (48%), Gaps = 19/207 (9%) Query 80 LDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHC----------NHQPVFLVHR 129 L I++EDE I+VV+KP G++ P + +L L HC N P F HR Sbjct 88 LKIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLKHCGYRQFDSNKLNFYPQF-AHR 146 Query 130 LDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLALVHFPLDSLSGTISAPLERVGNNK 189 +DR+TSG+++ AK +L L K + + + Y LV + L G +A ++ NN Sbjct 147 IDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVFGQFNHL-GLQTAYWKKDNNNG 205 Query 190 VM---WKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQIRVHLQFIKHPVYND 246 ++ WK + K F + + Q + +LI L++GRTHQIR L + + D Sbjct 206 IVTVKWKPFPEAKKISTFFENSSYIAQKD-MSLITIRLISGRTHQIRACLNLFSNQLVGD 264 Query 247 PLYGL---KSEQATEYGQYLHAQQISF 270 Y L K+ Q LHA ++ F Sbjct 265 KKYSLIQFKNRNNKYKHQALHAYELVF 291 Lambda K H a alpha 0.319 0.134 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33949711 Query= gi|13508032|ref|NP_109981.1| prolipoprotein signal peptidase [Mycoplasma pneumoniae M129] Length=184 Score E Sequences producing significant alignments: (Bits) Value gi|12045062|ref|NP_072872.1| prolipoprotein signal peptidase (lsp... 237 1e-82 >gi|12045062|ref|NP_072872.1| prolipoprotein signal peptidase (lsp) [Mycoplasma genitalium G-37] Length=181 Score = 237 bits (604), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 124/182 (68%), Positives = 141/182 (77%), Gaps = 5/182 (3%) Query 3 KAPTFFSKLLKQILFANRKPFLYYKLALILFVGFVILFQVFMLRAALNGEKGINGANGTD 62 + FFS+L Q+L AN+KPFL+YKL +I FVGF+IL QVF+LR ALNGE + T Sbjct 4 RKTKFFSQLKHQVLTANQKPFLFYKLTMIGFVGFIILLQVFILRNALNGE-----MDNTM 58 Query 63 VARSSFISIYVIGNKGVGFSLLADQPGLVYFLQGFLSFIALFFLVFSTSYNYIFWITTLA 122 VA S FI+IYVI NKGVGFSLL +Q GLVYFLQG LS IAL FLVF Y+YIFWITTLA Sbjct 59 VANSGFINIYVIRNKGVGFSLLQNQTGLVYFLQGLLSVIALVFLVFMVKYSYIFWITTLA 118 Query 123 FGSLGNFFDRLTSGSGEVLDYFVFSGGNSVFNLADCCITFSFIGLFLSFLIQFFKEMKQT 182 FGSLGNFFDRLTS + VLDYF+F G+SVFN ADCCITF FIGLF FLIQ FKE K + Sbjct 119 FGSLGNFFDRLTSANDSVLDYFIFQNGSSVFNFADCCITFGFIGLFFCFLIQMFKEFKHS 178 Query 183 KS 184 K+ Sbjct 179 KN 180 Lambda K H a alpha 0.333 0.148 0.442 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17191811 Query= gi|13508033|ref|NP_109982.1| similar to intracellular protease [Mycoplasma pneumoniae M129] Length=206 ***** No hits found ***** Lambda K H a alpha 0.322 0.136 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20157900 Query= gi|13508034|ref|NP_109983.1| hypothetical protein MPN295 [Mycoplasma pneumoniae M129] Length=220 Score E Sequences producing significant alignments: (Bits) Value gi|12045063|ref|NP_072873.1| hypothetical protein MG210.1 [Mycopl... 308 3e-109 >gi|12045063|ref|NP_072873.1| hypothetical protein MG210.1 [Mycoplasma genitalium G-37] Length=219 Score = 308 bits (788), Expect = 3e-109, Method: Compositional matrix adjust. Identities = 151/217 (70%), Positives = 177/217 (82%), Gaps = 4/217 (2%) Query 1 MNNTKNKSDWQLFLEDYRFYHEKEFDWITYLNHCLNSYPDFDILKFIRKYGPECEKSFLS 60 M TKNKSDWQ+FLEDYRFY E +FDW+TYLN+CLNSYPDFDI+KFI+KYGPECEKSFLS Sbjct 1 MGKTKNKSDWQIFLEDYRFYFETDFDWVTYLNNCLNSYPDFDIIKFIKKYGPECEKSFLS 60 Query 61 LQSKTKADVYGVFTKQIKAGSVNEVLAQKLVQLDALRTNYLIGALYSTNKTQKKLFKQSW 120 QSK K+DVY T +IK +E L +LVQLDALRTNYLIG+L+S NKTQ+KL K+SW Sbjct 61 WQSKAKSDVYSELTNKIKKQQFSEQLIYQLVQLDALRTNYLIGSLFSDNKTQRKLLKRSW 120 Query 121 KNAKKQGYTKQEWLMTLVGLPFEKGEYHKQLYAHSRQEILDLVEAVKKLYLRPE-KDDKL 179 KNAKK+GYTKQEWLM LVGLPFEKG YHKQLY HSRQEILDL E +KKLYL+ E +DKL Sbjct 121 KNAKKEGYTKQEWLMILVGLPFEKGAYHKQLYDHSRQEILDLTEVIKKLYLKTETNNDKL 180 Query 180 EFADSSKVSESKSIKVTNAVTLPSDDLDKELFEFSGE 216 EFA ++ + + ++T + L S DLDK+L EFSGE Sbjct 181 EFAATTSKT---TAQLTKTMPLNSSDLDKDLMEFSGE 214 Lambda K H a alpha 0.315 0.133 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21955653 Query= gi|13508035|ref|NP_109984.1| ribosomal protein S21 [Mycoplasma pneumoniae M129] Length=60 Score E Sequences producing significant alignments: (Bits) Value gi|12045331|ref|NP_072874.1| Ribosomal protein S21 [Mycoplasma ge... 109 1e-35 >gi|12045331|ref|NP_072874.1| Ribosomal protein S21 [Mycoplasma genitalium G-37] Length=62 Score = 109 bits (272), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 54/60 (90%), Positives = 59/60 (98%), Gaps = 0/60 (0%) Query 1 MPKIEVKNDDLELALKKFKRVSLEIRRLAQRHEYHLRKGMRLREKRKIAQKKRRKFRNMV 60 MPKIEVKNDDLELALKKFKR+SLE+RRLAQRHEYHLRKGMRLREK+KIAQKKRRKFR++ Sbjct 1 MPKIEVKNDDLELALKKFKRISLEVRRLAQRHEYHLRKGMRLREKQKIAQKKRRKFRSLA 60 Lambda K H a alpha 0.326 0.138 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4318839 Query= gi|13508036|ref|NP_109985.1| hypothetical protein MPN297 [Mycoplasma pneumoniae M129] Length=149 Score E Sequences producing significant alignments: (Bits) Value gi|12045064|ref|NP_072875.1| hypothetical protein MG211 [Mycoplas... 196 2e-67 >gi|12045064|ref|NP_072875.1| hypothetical protein MG211 [Mycoplasma genitalium G-37] Length=147 Score = 196 bits (498), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 96/149 (64%), Positives = 117/149 (79%), Gaps = 2/149 (1%) Query 1 MDNDKKDKIILSGELTNHRFNFTKDGENGYSAYEVDRFLDQLVHTLTHYEAQRNREEEMK 60 MDN K+I S L NHRFNF KD + GY A EVD FLDQL TL HYE +N E+E+K Sbjct 1 MDNKNPQKLITSELLANHRFNFAKDDKGGYDANEVDAFLDQLTKTLIHYEEMKNNEQELK 60 Query 61 TAYEKLFQDRDEILKRCSKLEAELNNFYENGYSNRVLISRVQALENKIESLPSGQNDRLE 120 AY+KLF DRD+IL RC+KLEA+LN FYENGY+N+VLI+RVQ LE+K+E LP ++LE Sbjct 61 NAYDKLFSDRDQILSRCAKLEADLNTFYENGYANKVLINRVQELEDKLEKLPDRYTEKLE 120 Query 121 RIEKLLKRVIKHWTDGEDLSYGDFDDDFF 149 RIEKLLK+VIKHWTDGED+S +F+D+FF Sbjct 121 RIEKLLKKVIKHWTDGEDIS--NFEDEFF 147 Lambda K H a alpha 0.316 0.136 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12507582 Query= gi|13508037|ref|NP_109986.1| similar to holo-acyl-carrier protein synthase [Mycoplasma pneumoniae M129] Length=119 Score E Sequences producing significant alignments: (Bits) Value gi|12045065|ref|NP_072876.1| hypothetical protein MG211.1 [Mycopl... 135 1e-44 >gi|12045065|ref|NP_072876.1| hypothetical protein MG211.1 [Mycoplasma genitalium G-37] Length=114 Score = 135 bits (341), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 67/114 (59%), Positives = 91/114 (80%), Gaps = 2/114 (2%) Query 1 MILGIGIDLVEIKRFEQLARQTDNCFAKRLLTSTEYAHYAKLRKDSEKSSFLAVHWSLKE 60 M++GIGID+V++KRF L +T +CFAKRLLTS E Y KL ++++++FLAVHW+LKE Sbjct 1 MVVGIGIDVVQLKRFLTLV-ETSDCFAKRLLTSNELNSYWKL-NNNQRANFLAVHWTLKE 58 Query 61 AIYKAVNHIKPLFSQLEITKKNQRYNCQIDPKIELLLSVSYSSNNITAICLAQQ 114 AIYKA +HIKPLF++LEI K N +Y C+ I LLLSVSY++ +++AICLAQQ Sbjct 59 AIYKATSHIKPLFTKLEIYKLNNQYRCEFIQNINLLLSVSYTNCHVSAICLAQQ 112 Lambda K H a alpha 0.320 0.132 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8666451 Query= gi|13508038|ref|NP_109987.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Mycoplasma pneumoniae M129] Length=266 Score E Sequences producing significant alignments: (Bits) Value gi|12045066|ref|NP_072877.1| 1-acyl-sn-glycerol-3-phosphate acety... 365 2e-130 >gi|12045066|ref|NP_072877.1| 1-acyl-sn-glycerol-3-phosphate acetyltransferase (plsC) [Mycoplasma genitalium G-37] Length=268 Score = 365 bits (937), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 176/262 (67%), Positives = 217/262 (83%), Gaps = 0/262 (0%) Query 1 MKKLTQAFLRFCLRFLQLLSLVLVLPVFVLMLISSLISAKNYESIPENYPPEIRFKKVYR 60 M KL + RF +RFLQ+LSL +V P F+L ++ LI++KNYES+P NYPPEIRFKKVYR Sbjct 1 MDKLFKTSFRFIIRFLQILSLPVVFPYFLLSFLACLITSKNYESLPYNYPPEIRFKKVYR 60 Query 61 LVSLFLYIKGVKVVIVNPENVPKKAVLVVANHKSNLDPLILIKAFGKTEGVPPLTFIAKI 120 LVS++LYIKG+KVV VN + +PKK VLVVANHKSNLDPL+LIKAFG+ + PPLTF+AKI Sbjct 61 LVSMWLYIKGIKVVTVNDKIIPKKPVLVVANHKSNLDPLVLIKAFGRLKNSPPLTFVAKI 120 Query 121 ELQDTWLFKIMKLIDCVFIDRKNLRQMAASLEQQQQIIRQGTALCVFPEGTRVLSRQIGE 180 EL+DT LFK+MKLIDCVFIDRKN+RQ+A +LE QQQ+IRQGTA+ VF EGTR+LS IGE Sbjct 121 ELKDTVLFKLMKLIDCVFIDRKNIRQIANALETQQQLIRQGTAIAVFAEGTRILSNDIGE 180 Query 181 FKSGALKVAYNAFVPIVPLTIVGSMGHMESKKRLQKAQVERDRGYKIQVIFNTPINPINF 240 FK GALKVAYNAFVPI+P++IVGS+G MES KRL++ V++ Y+++VIFN INPI+F Sbjct 181 FKPGALKVAYNAFVPILPVSIVGSLGKMESNKRLKEHGVKKSSNYEVKVIFNKLINPISF 240 Query 241 NQIDSQNVANNVWREISQTYAQ 262 NQIDS N+ANN+ IS Y Sbjct 241 NQIDSNNLANNIRSIISDAYTS 262 Lambda K H a alpha 0.325 0.139 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28079001 Query= gi|13508039|ref|NP_109988.1| bidomainal:Dihydrofolate Reductase and C-terminal domain is conserved hypo-thetical [Mycoplasma pneumoniae M129] Length=506 Score E Sequences producing significant alignments: (Bits) Value gi|12045067|ref|NP_072878.1| hypothetical protein MG213 [Mycoplas... 357 2e-120 gi|12045083|ref|NP_072894.1| dihydrofolate reductase (dhfR) [Myco... 82.8 2e-20 >gi|12045067|ref|NP_072878.1| hypothetical protein MG213 [Mycoplasma genitalium G-37] Length=471 Score = 357 bits (915), Expect = 2e-120, Method: Compositional matrix adjust. Identities = 213/483 (44%), Positives = 300/483 (62%), Gaps = 30/483 (6%) Query 1 MITLIWCQDKHFGIGRDNTIPWKLTEANQHFYNTTKNQTVVMGYNTFQELGDKLTDHNVV 60 MI+LI+ + F P E HF +T+V+ Y +FQ +L + Sbjct 1 MISLIFDKSNSFN-------PQLCVELLNHFKVVMLTKTIVVDYPSFQAWKAQLKPFKLA 53 Query 61 VLSKKHFEELQNNTNIKVFNSIEKLLQHHFNRDLYVIGGKQIFHHFIELADRLIISVLPV 120 V S EL N+ + VFN+ ++LL N DL + + F D+LI+ + P Sbjct 54 VFSDNLQTELTPNSKLTVFNNYQQLLVD--NNDLIIFATPTLVQLFDNEIDQLIV-INPT 110 Query 121 D-----FKCNLRLKLGLDSFELMQEQQHSQFKVQYWHKKHPERLSFNVFLEDYNGTLPNL 175 F CN + F L+++ +V Y+ KK F V + + G L +L Sbjct 111 SKSKDQFNCNW------NDFVLIKQTNFKNHQVGYFDKKSSYEPPFTVVTDHFFGNLTDL 164 Query 176 LELLIDKKFNLHQVDIAKITTQYLHLINTNLNKQAIEPITDYLVITSRIVEQKANNLLQI 235 LL+DKK +++ VDI I+ QYL++I NK+AIE ITDYLVITS+I+ +KA+NLL Sbjct 165 FSLLVDKKVSVNDVDIGLISLQYLNIIANYTNKKAIEKITDYLVITSKILAKKADNLL-- 222 Query 236 ND----IALDSDFLDNKLRDKLVAQLVEYKRYRESLDDFEKLRINRLAYFSKDNDFNRFI 291 ND L+ D N RDK++A LVE+KRY +SL +FEKLR+NRLAYFSK N+ +FI Sbjct 223 NDHQEESVLEYDLATNNFRDKMIANLVEHKRYCDSLGEFEKLRVNRLAYFSKANEMEQFI 282 Query 292 QTVDKSNTEPVKIEDELPNYVSVLKLHHAMNKLMQRWRAQFLANKNISIQELSIEQVQAE 351 +T +N + V +ED+LPNY+SVLKL HAMNKL++ + L NKNI+I+ELS+EQVQ E Sbjct 283 KT---ANDQLVTVEDQLPNYISVLKLFHAMNKLLEMRLSSLLTNKNITIKELSVEQVQKE 339 Query 352 ILATIKQFGYHSVSLKRVLLKVNHHISLMYFITAFVALLVLINNQIIDIEQTSFDDELYI 411 ++ IKQF Y +VSLKRVLLK+NH ISLMYF+TAFVALLVL+NNQ+I +EQ + ELYI Sbjct 340 LVLAIKQFNYQTVSLKRVLLKLNHPISLMYFVTAFVALLVLLNNQVIGLEQKDYHSELYI 399 Query 412 CLLDSSRIEQLQETPEAMVERAVKQRQEAQELARQVAREKAIANAQKREAYLKAKYGKDY 471 LLD ++++ QE+P+ MV+R Q+Q+ + + + + +AI N QKR YLK KYG++Y Sbjct 400 FLLDENQLKTFQESPDEMVKRIQAQQQQNELIIAKNKQLRAIKNKQKRADYLKKKYGENY 459 Query 472 LTR 474 L + Sbjct 460 LDK 462 >gi|12045083|ref|NP_072894.1| dihydrofolate reductase (dhfR) [Mycoplasma genitalium G-37] Length=160 Score = 82.8 bits (203), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (51%), Gaps = 8/161 (5%) Query 1 MITLIWCQDKHFGIGRDNTIPWKLTEANQHFYNTTKNQTVVMGYNTFQELGDKLTDHNVV 60 M+ IW + IG +NT+PW + + HF TT Q ++MG T++ L + Sbjct 1 MLIAIWAMTQEGLIGNNNTLPWMIKQELAHFKKTTLFQALLMGRKTYESLPKVFEKRTIF 60 Query 61 VLSKKH---FEELQNNTNIKVFNSIEKLL---QHHFNRDLYVIGGKQIFHHFIELADRLI 114 +LSK FEE + +KV N L+ Q + +DL++ GGK ++ I D+LI Sbjct 61 LLSKDQNYRFEE--KGSEVKVINDFWPLIKSYQANKEKDLFICGGKSVYEQTINECDQLI 118 Query 115 ISVLPVDFKCNLRLKLGLDSFELMQEQQHSQFKVQYWHKKH 155 +S++ +K + LK+ L F L + + +F V Y+ KK Sbjct 119 VSIIKKKYKGDQFLKVDLSKFVLNEVVEFEEFNVNYYRKKQ 159 Lambda K H a alpha 0.321 0.136 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 60528816 Query= gi|13508040|ref|NP_109989.1| hypothetical protein MPN301 [Mycoplasma pneumoniae M129] Length=208 Score E Sequences producing significant alignments: (Bits) Value gi|12045068|ref|NP_072879.1| hypothetical protein MG214 [Mycoplas... 313 1e-111 >gi|12045068|ref|NP_072879.1| hypothetical protein MG214 [Mycoplasma genitalium G-37] Length=207 Score = 313 bits (801), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 152/208 (73%), Positives = 177/208 (85%), Gaps = 1/208 (0%) Query 1 MDATIKVTKPVLKQKDSSAANLVAAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALV 60 M TI + P LK K S ANLVA+IYGLLFV G KG+TL EL R+ +K G+EK+K AL+ Sbjct 1 MKTTINIATPTLK-KPSKEANLVASIYGLLFVCGAKGITLRELIRIFKKAGIEKVKLALL 59 Query 61 QLERKLSLDDESGIEIKKFGHSFRLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAY 120 LERKL+ D++SG+E+KKFG+SF LVTK IKD++H L +K+KNPLNSK MEVLAIIAY Sbjct 60 ALERKLADDEQSGVELKKFGNSFSLVTKPIIKDYLHLLLAHKVKNPLNSKAMEVLAIIAY 119 Query 121 NQPCTRPRINEIRGADSFQIVDDLLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSL 180 NQPCTRPRINEIRG DSFQIVDDL+ KELIVELGR D PGRPFIYEVS KFYDLFGI+SL Sbjct 120 NQPCTRPRINEIRGVDSFQIVDDLIAKELIVELGRTDKPGRPFIYEVSAKFYDLFGIDSL 179 Query 181 DELPKVENFDLDKFRQGSFFDSNRYGDD 208 D+LPK+E+FDLDKF+QGSFFDSNRYGD+ Sbjct 180 DQLPKIEHFDLDKFKQGSFFDSNRYGDE 207 Lambda K H a alpha 0.319 0.140 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20445870 Query= gi|13508041|ref|NP_109990.1| 6-phosphofructokinase [Mycoplasma pneumoniae M129] Length=328 Score E Sequences producing significant alignments: (Bits) Value gi|12045069|ref|NP_072880.1| 6-phosphofructokinase (pfk) [Mycopla... 457 8e-165 >gi|12045069|ref|NP_072880.1| 6-phosphofructokinase (pfk) [Mycoplasma genitalium G-37] Length=323 Score = 457 bits (1175), Expect = 8e-165, Method: Compositional matrix adjust. Identities = 213/321 (66%), Positives = 261/321 (81%), Gaps = 0/321 (0%) Query 8 KIAILTSGGDAPGMNATLVYLTRYATSSEIEVFFVKNGYYGLYHDELVPAHQLDLSNSLF 67 KIAILTSGGDA GMNAT+ YLT+YA + ++EVF+VKNGYYGLYH+ + + +LDL++ F Sbjct 3 KIAILTSGGDASGMNATIAYLTKYAIAKQLEVFYVKNGYYGLYHNHFITSKELDLTDFFF 62 Query 68 SAGTVIGSKRFVEFKELKVREQAAQNLKKRQIDYLVVIGGDGSYMGAKLLSELGVNCYCL 127 GTVIGS RF +F++ +R+QA NLKKR I+ LVVIGGDGSYMGAK LSELG+NC+CL Sbjct 63 MGGTVIGSSRFKQFQDPSLRKQAVLNLKKRGINNLVVIGGDGSYMGAKALSELGLNCFCL 122 Query 128 PGTIDNDINSSEFTIGFLTALESIKVNVQAVYHTTKSHERVAIVEVMGRHCGDLAIFGAL 187 PGTIDND+NSSEFTIGF TALE+I+VNV+A+YHTTKSH R+AI+EVMGR C DL IFG L Sbjct 123 PGTIDNDVNSSEFTIGFWTALEAIRVNVEAIYHTTKSHNRLAIIEVMGRDCSDLTIFGGL 182 Query 188 ATNADFVVTPSNKMDLKQLESAVKKILQHQNHCVVIVSENIYGFDGYPSLTAIKQHFDAN 247 ATNA FVVT N +DL E AV+K+LQ QN+CVV+VSENIYG +G PSL +K+HF+ N Sbjct 183 ATNASFVVTSKNSLDLNGFEKAVRKVLQFQNYCVVLVSENIYGKNGLPSLEMVKEHFENN 242 Query 248 NMKCNLVSLGHTQRGFAPTSLELVQISLMAQHTINLIGQNKVNQVIGNKANVPVNYDFDQ 307 +KCNLVSLGHTQRGF+P S+EL QISLMA+HTI+L+ N +QVIG K N VNYDF+ Sbjct 243 AIKCNLVSLGHTQRGFSPNSIELFQISLMAKHTIDLVVNNANSQVIGMKNNQAVNYDFNT 302 Query 308 AFNMPPVDRSALIAVINKNII 328 AFN+P DR+ L+ +N II Sbjct 303 AFNLPKADRTKLLNQVNTAII 323 Lambda K H a alpha 0.319 0.135 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36382205 Query= gi|13508042|ref|NP_109991.1| pyruvate kinase [Mycoplasma pneumoniae M129] Length=508 Score E Sequences producing significant alignments: (Bits) Value gi|12045070|ref|NP_072881.1| pyruvate kinase (pyk) [Mycoplasma ge... 825 0.0 >gi|12045070|ref|NP_072881.1| pyruvate kinase (pyk) [Mycoplasma genitalium G-37] Length=508 Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/508 (78%), Positives = 442/508 (87%), Gaps = 0/508 (0%) Query 1 MIHHLKRTKIIATCGPALTKKLWTLAMLDDPAYAAMKAEAYANIENIIKNGVTVIRLNFS 60 MI HLKRTKIIATCGPALTK L +L MLDD YAA+K AYANIE IIK+GV+VIRLNFS Sbjct 1 MIDHLKRTKIIATCGPALTKSLVSLKMLDDNEYAAIKKVAYANIEAIIKSGVSVIRLNFS 60 Query 61 HGNHEEQAVRIKIVRDVAKKLNLPVSIMLDTNGPEIRVFETAPEGLKILKDSEVVINTTT 120 HG HEEQ VRIKIVRDVAK +N+PVSIMLDTNGPEIR+ ET EGLKI KDSEV+INT + Sbjct 61 HGTHEEQQVRIKIVRDVAKAMNIPVSIMLDTNGPEIRIVETKKEGLKITKDSEVIINTMS 120 Query 121 KEVAKNNQFSVSDASGTYNMVNDVKVGQKILVDDGKLSLVVKRIDTKNNQVICVAQNDHT 180 K +A +NQF+VSDASG YNMVNDV +GQKILVDDGKL+LVV R+D ++NQVICVA+NDHT Sbjct 121 KMIASDNQFAVSDASGKYNMVNDVNIGQKILVDDGKLTLVVTRVDKQHNQVICVAKNDHT 180 Query 181 IFTKKRLNLPNADYSIPFLSAKDLRDIDFGLTHQIDYIAASFVNTTENIKQLRDYLASKN 240 +FTKKRLNLPNA YSIPFLS KDL+DIDFGL+ IDYIAASFVNT +IKQLRDYL KN Sbjct 181 VFTKKRLNLPNAQYSIPFLSEKDLKDIDFGLSQGIDYIAASFVNTVADIKQLRDYLKLKN 240 Query 241 AKHVKLIAKIESNHALNNIDGIIKASDGIMVARGDLGLEIPYYKVPYWQRYMIKACRFFN 300 A VK+IAKIESNHALNNID IIKASDGIMVARGDLGLEIPYY+VPYWQRYMIKACRFFN Sbjct 241 ASGVKIIAKIESNHALNNIDKIIKASDGIMVARGDLGLEIPYYQVPYWQRYMIKACRFFN 300 Query 301 KRVITATQMLDSLEKNIQPTRAEVTDVYFAVDRGNDATMLSGETANGAFPLNAVYVMKMI 360 KR ITATQMLDSLEKNIQPTRAEVTDVYFAVDRGNDATMLSGETA+G +PLNAV VM+ I Sbjct 301 KRSITATQMLDSLEKNIQPTRAEVTDVYFAVDRGNDATMLSGETASGLYPLNAVAVMQKI 360 Query 361 DKQSETFFDYQYNLNYYMANSKARHSEFWKQVVLPLAQKTAPKRKLINSDFKYDFVVHAT 420 DKQSETFFDYQYN+NYY+ NS A S FW VVLPL +KT PKRKL+NS FKYDF+V+ T Sbjct 361 DKQSETFFDYQYNVNYYLKNSTANKSRFWHNVVLPLTKKTVPKRKLVNSAFKYDFIVYPT 420 Query 421 NNLNEIYALSNARLAAAVIILTNDPQVYTGHGVDYGIFPYLIDQKPQSLSKAEFKSLANV 480 NN+N IYALSNARLAAAVIILTN+ +VYTGHGVDYGIF YLID+ P L+KAE LA Sbjct 421 NNINRIYALSNARLAAAVIILTNNKRVYTGHGVDYGIFCYLIDKNPNQLTKAELIELAWK 480 Query 481 AIKHYQQHGEISQLKQCLGVFHNKIISL 508 AI HYQ +G++ +LKQCL V++ II+L Sbjct 481 AINHYQAYGDLEKLKQCLAVYNETIINL 508 Lambda K H a alpha 0.319 0.134 0.382 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 60809042 Query= gi|13508043|ref|NP_109992.1| (N-terminal, fragment) [Mycoplasma pneumoniae M129] Length=238 ***** No hits found ***** Lambda K H a alpha 0.322 0.134 0.407 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24312890 Query= gi|13508044|ref|NP_109993.1| (C-terminal, fragment) [Mycoplasma pneumoniae M129] Length=198 ***** No hits found ***** Lambda K H a alpha 0.321 0.135 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 19006020 Query= gi|13508045|ref|NP_109994.1| less (fragment) [Mycoplasma pneumoniae M129] Length=273 ***** No hits found ***** Lambda K H a alpha 0.320 0.136 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29076732 Query= gi|13508046|ref|NP_109995.1| carbamate kinase (EC 2.7.2.2) [Mycoplasma pneumoniae M129] Length=309 ***** No hits found ***** Lambda K H a alpha 0.315 0.133 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33949711 Query= gi|13508047|ref|NP_109996.1| aa_permeases [Mycoplasma pneumoniae M129] Length=565 ***** No hits found ***** Lambda K H a alpha 0.329 0.143 0.434 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 68418210 Query= gi|13508048|ref|NP_109997.1| hypothetical protein MPN309 [Mycoplasma pneumoniae M129] Length=405 Score E Sequences producing significant alignments: (Bits) Value gi|12045071|ref|NP_072882.1| proline-rich P65 protein [Mycoplasma... 236 2e-76 >gi|12045071|ref|NP_072882.1| proline-rich P65 protein [Mycoplasma genitalium G-37] Length=372 Score = 236 bits (602), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 175/425 (41%), Positives = 229/425 (54%), Gaps = 73/425 (17%) Query 1 MDINKPGWNQSDQQATA-YDPNQQQYYGD------GSTYYDPDQ------AVDPNQAYYP 47 M+ N+ + Q+ Q + ++ +Q QYY D + +DP+Q DPNQ YY Sbjct 1 MEKNRSAFQQNQQASNQPFNQDQNQYYQDPNQQQFNQSGFDPNQQQFNQPGFDPNQQYYQ 60 Query 48 DPNTYPDAAAYYGYGQDGQAY----PQDYAQ---DPNQAYYADPNAYQDPNAYTDPNAYV 100 DPN A G+ Q+ Q Y Q + Q DPNQ YY DPN Q A D N Y Sbjct 61 DPNQQQFNQA--GFDQNQQYYQDPNQQQFNQPGFDPNQQYYQDPNQQQFNQAGFDQNQY- 117 Query 101 DPNAYQDPNAYVDPNNYTDPNAYYGYGQDGQAYPQDYAQDPNQAYYADPNAYQDPNAYTD 160 YQDPN + D N YY QDPNQ + P Sbjct 118 ----YQDPNQQQFNQSGFDQNQYY--------------QDPNQQQFNQP----------- 148 Query 161 PYYVTSTDPNAYYGQVDNVPALEASDLAYEVTPQEQAAEQELFSEPETKVIREIHEFPFE 220 S D N Q N P S A+E+TPQEQ AEQE+F E +V+REIHE PFE Sbjct 149 -----SFDLN---NQQFNQPGFNQSP-AFEITPQEQKAEQEMFGEEPPQVVREIHELPFE 199 Query 221 KIRSYFQTDFDSYNSRLTQLKDKLDNAIFSMRKAIDTVKENSANLQIMKQNFERQLKEQQ 280 KIRS+ Q+DFDSYN RL LK KLDNA++S+ K I EN+ANL+ ++ N E++++ Q Sbjct 200 KIRSFLQSDFDSYNFRLNSLKSKLDNALYSLDKTIQNTNENTANLEAIRHNLEQKIQN-Q 258 Query 281 TQRLTSNTDAEKIGAKINQLEERMQRLSRTMESVEWTKKEPRQEQFDPRFVDPRNFNNYV 340 +++L +N D +K+ KIN+LE RMQ+L+R ES+ K + + + Sbjct 259 SKQLRTNFDTQKLDDKINELEIRMQKLTRNFESLSELSKHNSYPNYYEKLL--------P 310 Query 341 NNTDTMMSMFEKVLMMNLLRSTTPVQPPVQYFTPQPLTASPRPVYEEPISASFRRRGYRG 400 N D+M ++FEK LMMNLLR+T P QP VQY+ PQP RP Y+EPI A FRRRGYR Sbjct 311 NGGDSMTNVFEKALMMNLLRTTLPPQPQVQYY-PQPYPYI-RPYYDEPIYAGFRRRGYR- 367 Query 401 DEFYE 405 D+FYE Sbjct 368 DDFYE 372 Lambda K H a alpha 0.311 0.130 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 46979973 Query= gi|13508049|ref|NP_109998.1| Cytadherence High Molecular Weight Protein 2 (SwissProt HMW2_MYCPN) [Mycoplasma pneumoniae M129] Length=1818 Score E Sequences producing significant alignments: (Bits) Value gi|12045072|ref|NP_072883.1| cytadherence accessory protein (hmw2... 1877 0.0 >gi|12045072|ref|NP_072883.1| cytadherence accessory protein (hmw2) [Mycoplasma genitalium G-37] Length=1805 Score = 1877 bits (4862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1043/1828 (57%), Positives = 1397/1828 (76%), Gaps = 36/1828 (2%) Query 1 MNDTDKKFPLQPVYDTGFDDGYLQRDYEKCLESAAANDAQTVELQTQLLAEIKNLENEIK 60 M DKK LQP+YD GFDDGYLQ +YEK + + D +E QLL EIK+LE+E+K Sbjct 1 MKPFDKKPSLQPIYDIGFDDGYLQSEYEK---NRSKTDVDKIE--NQLLKEIKSLEDELK 55 Query 61 ALKAQESRQPD-PHNNARIQSLEASLNRLVNEYNNFEFQKNYMVDRVAELNNKARFFKDE 119 LK +++ D P + +I LE LNRLVNEY NF+FQKN+MVD+V+EL+N RF+K+E Sbjct 56 NLKGLKNQAEDNPELDKKINHLEVDLNRLVNEYKNFQFQKNHMVDKVSELDNLTRFYKNE 115 Query 120 LKRLQQENAAFVNSRYANWADFQSNYQLKLDQFQALIDQQNQTIKQLNEQIAANQGLIDQ 179 L RLQQENA F+NS+YAN A+FQ+NY KL+ F LI+ QNQTI +LN++I NQ LID Sbjct 116 LTRLQQENADFLNSKYANLANFQANYHNKLNDFHRLIENQNQTINRLNQKINGNQNLIDN 175 Query 180 NVQRLQQNHSLDQQERDALLYEVDHLYNELYELENQKRLVGIEYEATYQDLVSADAELQN 239 NV LQ N ++ ++++ LL +D LYNEL +LENQKRL+ IEYE TY++LVSAD ELQN Sbjct 176 NVALLQ-NPNITVEKKNYLLNVIDQLYNELDQLENQKRLLSIEYENTYRELVSADNELQN 234 Query 240 VYETIAQNQANFQKQCDAYWAQLKQVEQQIQTTKQELVDEESTLKVRLNDADFYINSRLA 299 VYE I QNQ F+ Q Y +L Q+E++IQ TKQELVD+ES L+V+++DADFYIN+RLA Sbjct 235 VYENIDQNQIQFKHQYQTYRDELSQLERKIQLTKQELVDKESALRVKIDDADFYINARLA 294 Query 300 ELDDLTSKINERDFVSKEQAQDVKASLANLTKEKERLSAEKDSFERLRNTALNDINRMEQ 359 ELDD+ +++ +D ++K+ AQ V+ L L KEK+RL+ +K++F LR +AL DIN+++Q Sbjct 295 ELDDVAKQLSFQDGITKQNAQHVEDKLVALNKEKDRLNTQKEAFFNLRQSALIDINKLQQ 354 Query 360 ENALFAKHLEQQQYEFERKQQESLLKLETEHKQLQKRIGEFKIESEAKSEALLIQERELL 419 EN LFAKHLE QQ EFE+KQ +SLLKLETE+K LQ +I EFK ES KSE LL QEREL Sbjct 355 ENELFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQERELF 414 Query 420 EKRREIDDLLTQASLEYEQQRRTNQVLKEKHRQVQQHFQNLVHAKKKLDQKRHYLAEQKR 479 EKRREID LLTQASLEYE QR ++Q+LK+K +V+QHFQNL +AKK+LD++R+ L +QK+ Sbjct 415 EKRREIDTLLTQASLEYEHQRESSQLLKDKQNEVKQHFQNLEYAKKELDKERNLLDQQKK 474 Query 480 IDEEQIFKLKEKIATERRELEKLYLVKKQKQDQKENDLLIFEKQLRQYQADFENEIEEKQ 539 +D E IF+LKEK+A ER+ELE+LYLVKKQKQDQKEN+LL FEKQL+Q+QADFENE+E KQ Sbjct 475 VDSEAIFQLKEKVAQERKELEELYLVKKQKQDQKENELLFFEKQLKQHQADFENELEAKQ 534 Query 540 NELFASQKSLQKSFTQLKNKEAELNQKAQKIAEDWAHLKQNKHHHADLEIFLEGEFNHLQ 599 ELF ++ +L++SF +L++KE +LN KAQ+IA +++ LK +K AD E+ L+ E+ +LQ Sbjct 535 QELFEAKHALERSFIKLEDKEKDLNTKAQQIANEFSQLKTDKSKSADFELMLQNEYENLQ 594 Query 600 QEKHKLLEARTQFDNRVSLLSARFKQKQAELVKQKQSLEQLTAAFNKEQEAVERDWKDRL 659 QEK KL + RT F+ ++LS R +QK+ EL++QK++L+QLT +F +E+ +R+ K+ + Sbjct 595 QEKQKLFQERTYFERNAAVLSNRLQQKREELLQQKETLDQLTKSFEQERLINQREHKELV 654 Query 660 ANLEKQKEMLGDKVHQFDENSLNISKKLAERELAIKFKEKELEAAQKQLSLDNNNNAGLK 719 A++EKQKE+LG K+ F + SLN SK LAERE+AIKFKEKE+EA +KQL D NN ++ Sbjct 655 ASVEKQKEILGKKLQDFSQTSLNASKNLAEREMAIKFKEKEIEATEKQLLNDVNNAEVIQ 714 Query 720 LQLDKLSESLKTERLELEASKERILDFYDESSRRIADYESDLQARLAEVKTLEKNQQETA 779 L +L++SL ER EL+ +K+RI DF+++S +++ +YE LQ RL E++TLE NQ++ + Sbjct 715 ADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEANQKQHS 774 Query 780 AKSERELKVALEKLNQAKKAFLQIRKQQLLEIASVKQQLAQKANLLKNQQAELDKQTEEL 839 +++ + L+KLN+ K+AFL +RK+Q +E+ ++KQ+L+ K L QQAELD++T EL Sbjct 775 YQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELDRKTHEL 834 Query 840 EAAFLEQDTDKKELEKALHSVKSKQELLERERSFLLQKQREFAEHVAGFKRQVHFKTTQM 899 AFL D D+K L+ L +VK Q+L++ ERS LL+KQREFAE+VAGFKR KT+Q+ Sbjct 835 NNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAENVAGFKRHWSNKTSQL 894 Query 900 QRLSEFNKQQQSEQIKRETELKIAFADLKKDYQLFELQKNQEFQQIEQKHKELELLAQKQ 959 Q++ E K+Q+SEQ ++ETELKIAF+DL+KDYQ+FELQK+QEF+QIE K +EL+ LA+K Sbjct 895 QKIYELTKKQESEQTQKETELKIAFSDLQKDYQVFELQKDQEFRQIEAKQRELDKLAEKN 954 Query 960 AELKQELEQKATALASQDQDTVQAKLDLARQQHELELRQNAFNQASLSLNKQREQLTNQV 1019 ++K EL+ + AL +Q QDTVQA+L+L R+QH+L L Q AFNQA+ SL KQREQLT ++ Sbjct 955 NQVKLELDNRFQALQNQKQDTVQAQLELEREQHQLNLEQTAFNQANESLLKQREQLTKKI 1014 Query 1020 KVLHGELKKRHEKLTLKDRLLAEKEKDQHKKDAEINQRFKQFENEYADFDQAKKRELQEL 1079 + H ELKKR++ L LK + L KE+DQ +KD EIN RFKQFE EY DFD+AKKREL+EL Sbjct 1015 QAFHYELKKRNQFLALKGKRLFAKEQDQQRKDQEINWRFKQFEKEYTDFDEAKKRELEEL 1074 Query 1080 NQIRRNLEQSNASLLKKRNQLTLDFALLRKVQHNTQTNRVQLNTQIKEFLLEKKNFQKAS 1139 +IRR+L QSN L +KR +L DF L KVQHNTQ NR QLN+QI++FLLE+KNFQ+ S Sbjct 1075 EKIRRSLSQSNVELERKREKLATDFTNLNKVQHNTQINRDQLNSQIRQFLLERKNFQRFS 1134 Query 1140 DEAALQKALLIKRLRSFASKLQLQREALAIQKLEFDKRDEQQKSEINNAKLQLEQFKLEK 1199 +EA +KA LIKRLRSFAS L+LQ+EALAIQKLEFDKRDEQQK E+ A LQLEQFK EK Sbjct 1135 NEANAKKAFLIKRLRSFASNLKLQKEALAIQKLEFDKRDEQQKKELQQATLQLEQFKFEK 1194 Query 1200 QNFDEAKQKQLIEFKDQCQRLDVEKRLLKQKLVQLKNLSKSYLTYKNRADLSQQQLQHKY 1259 QNFD KQ+QL+ K QC++L EK+ L QKLV+LKNLS++YL KN+A+ SQQQLQ KY Sbjct 1195 QNFDIEKQRQLVAIKTQCEKLSDEKKALNQKLVELKNLSQTYLANKNKAEYSQQQLQQKY 1254 Query 1260 ANLLELKEKLQTAKRALDKKHRAIYGKMAQFVSELRQEKKQLLSAQKQVDDKSRLLEQNQ 1319 NLL+LKE L+ K LDKKHR+I+ ++ +F ++LR EKKQLL AQ+ VDDK+RLL++N+ Sbjct 1255 TNLLDLKENLERTKDQLDKKHRSIFARLTKFANDLRFEKKQLLKAQRIVDDKNRLLKENE 1314 Query 1320 RHLQNLSSETKKKRQSLEHDINKFDQRRKEAVSSILNSHKKLKQKEGELQGILQKLSLKK 1379 R+L LS+ET++KR LE I+ F+++RK+A +IL SHK++K+KEGELQ +L +L +K Sbjct 1315 RNLHFLSNETERKRAVLEDQISYFEKQRKQATDAILASHKEVKKKEGELQKLLVELETRK 1374 Query 1380 TQIEQEFSKLYQQREKLDRQRTTLSKLHRELKAQNEATAHKNREVLEIENYYKKELQRLT 1439 T++ +F+K +QRE+ + QR L +L + L+ Q + K + + EIEN YK+ ++ L Sbjct 1375 TKLNNDFAKFSRQREEFENQRLKLLELQKTLQTQTNSNNFKTKAIQEIENSYKRGMEELN 1434 Query 1440 TEKSEFDNNKNRLFEYFRKIRNEIEKKEAHIKTVLEETQKKRHLVETEAVKLHLQKQSII 1499 +K EFD NK+RL+EYFRK+R+EIE+KE+ +K VL+ETQ+K +L+E +A KL+++K +I Sbjct 1435 FQKKEFDKNKSRLYEYFRKMRDEIERKESQVKLVLKETQRKANLLEAQANKLNIEKNTID 1494 Query 1500 SKGQELKEIKERVSRDISHTNKQREELNSLLHQNKLLQKNLAEREREINNKDSLLTQKIQ 1559 K +ELK K++V +DI TNKQR+ELN LL++NKLLQ++L ERER IN+KDSLL +KI+ Sbjct 1495 FKEKELKAFKDKVDQDIDSTNKQRKELNELLNENKLLQQSLIERERAINSKDSLLNKKIE 1554 Query 1560 TAKQKLSEKEARILKLLEKMRAVEQQYQAEITRLKTRNADLEKNDNKHLFPPLFKINGND 1619 T K++L +KE R+L+L+++M+ EQ+YQ EI RL+T+ D EK D K+ FPPLFKINGND Sbjct 1555 TIKRQLHDKEMRVLRLVDRMKLAEQKYQTEINRLRTQTFDSEKQDIKNFFPPLFKINGND 1614 Query 1620 MNYPYPYPWFYPQQKQEDSSNQIRHLFEQQLQFMQQRYENELTELRRQRALLEKKLDQIQ 1679 M +PY YPW YPQQKQ+D++ QIR LFEQQLQFMQQRYENEL ELRRQR LLEKKLDQIQ Sbjct 1615 MAFPYLYPWLYPQQKQDDNTLQIRQLFEQQLQFMQQRYENELNELRRQRNLLEKKLDQIQ 1674 Query 1680 LESQLSAKKNDFEKVEQMMQKLLEKTEQKLSAFDQKINALAEQINTQKA----------E 1729 LESQL+ K+++F KVE MM+KLLEKTE +L+ FDQKIN L +++N Sbjct 1675 LESQLNNKQSEFSKVESMMEKLLEKTESRLNDFDQKINYLTKKVNQHNTYQPSSYQPTPS 1734 Query 1730 HADSEKQQLLLRIEQLEKQNLAQAVQTPQPVQPVVQAPAVVPQVIQPQVVQSQPAFLATQ 1789 + DS+KQQLL RI++LEKQNL Q Q QP APAVV QP A Sbjct 1735 YQDSDKQQLLFRIQELEKQNLFQ-----QQFQP---APAVV----------QQPTSFAA- 1775 Query 1790 QSISKQQQIAQLNAEINSIKKLIAQKAA 1817 +I+KQQQIAQLNAEIN+IK+LIAQKAA Sbjct 1776 PNITKQQQIAQLNAEINNIKRLIAQKAA 1803 Lambda K H a alpha 0.311 0.126 0.325 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 234563382 Query= gi|13508050|ref|NP_109999.1| hypothetical protein MPN311 [Mycoplasma pneumoniae M129] Length=357 Score E Sequences producing significant alignments: (Bits) Value gi|12045073|ref|NP_072884.1| hypothetical protein MG218.1 [Mycopl... 344 1e-119 >gi|12045073|ref|NP_072884.1| hypothetical protein MG218.1 [Mycoplasma genitalium G-37] Length=346 Score = 344 bits (882), Expect = 1e-119, Method: Compositional matrix adjust. Identities = 198/367 (54%), Positives = 253/367 (69%), Gaps = 33/367 (9%) Query 1 MTNDYQQLNYLVETDDEADIIIANLVKQLNELKEILLSLDNQDLEINQVNHRTTVHNTSS 60 + N+YQQLN LVE+DDEAD++IANLVKQLNELK+IL+SLDNQ+ V Sbjct 2 VNNEYQQLNTLVESDDEADLVIANLVKQLNELKQILVSLDNQEASATAV----------- 50 Query 61 NTSNNSTSNNIADGNYNSNFFHNFSKETLQTQAKRGFLLLERCSLVGLQQLELEYLNVLG 120 T + N N + FHNFSKETLQ QAKRGFLLLERCSLVGLQQLELEY+N+LG Sbjct 51 ------TDKKEEEYNQNQSSFHNFSKETLQKQAKRGFLLLERCSLVGLQQLELEYVNLLG 104 Query 121 RSFESHQDKINFLVNLRDLTNDHLLDTEKIVSTLEQIFNVIGGTEYTPILNSFFNQSLND 180 RSF+S+Q K L NL++L ++H DTEKI++TLE+IF+VIGG+EYTP+LNSFFN+ L+D Sbjct 105 RSFDSYQQKTELLNNLKELVDEHFSDTEKIINTLEKIFDVIGGSEYTPVLNSFFNKLLSD 164 Query 181 PDPIQREIGLKQFVANLRQRFKTLLQKTNNSIQQLEAEIQIPTTHIKSDEVMFGPPDM-- 238 PDPIQREIGL+QF+ LRQRFK L QK ++S++Q+E E +I T +++ EVMFGPPD+ Sbjct 165 PDPIQREIGLRQFIITLRQRFKKLSQKIDSSLKQIETEAKIATEQVQNSEVMFGPPDIAN 224 Query 239 NERLVLN--DSETDAILRSIEAELESALQNKKQ----VVVTAVPPIAANLATDSISQETL 292 + L LN DSETDAIL S+E ELE+AL K Q ++VT PP +L ++SQ + Sbjct 225 DHELNLNWPDSETDAILSSMENELEAALLAKHQEEPPLIVT--PP---SLIKPTVSQPEV 279 Query 293 E--HNLNNTETVNTTTVTVTSASETQVRKP-QISLRPIFQGNFPKRLSREDIQRYAHQLQ 349 E NNT + T + Q +KP RP+F+ N P +LS++DI YAHQL Sbjct 280 EVVTPTNNTNFQPQVDLKPTDLKKQQKKKPLNFITRPVFKSNLPPKLSKDDIVHYAHQLL 339 Query 350 ELEQSNE 356 E NE Sbjct 340 EKNTHNE 346 Lambda K H a alpha 0.312 0.129 0.346 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 40487590 Query= gi|13508051|ref|NP_110000.1| hypothetical protein MPN312 [Mycoplasma pneumoniae M129] Length=218 ***** No hits found ***** Lambda K H a alpha 0.307 0.123 0.317 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21668651 Query= gi|13508052|ref|NP_110001.1| hypothetical protein MPN313 [Mycoplasma pneumoniae M129] Length=90 Score E Sequences producing significant alignments: (Bits) Value gi|12045075|ref|NP_072886.1| hypothetical protein MG220 [Mycoplas... 98.2 3e-30 >gi|12045075|ref|NP_072886.1| hypothetical protein MG220 [Mycoplasma genitalium G-37] Length=102 Score = 98.2 bits (243), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 51/94 (54%), Positives = 68/94 (72%), Gaps = 7/94 (7%) Query 1 MQRLKKSEAKQVVGGLSFWSFSAGVIMIVNAFSTLINTALDISEAANANNANGNGSSYSY 60 M +L+K++AKQVVGGLSFW+FSAG+IMIVNA + + + DI ++ AN NGS Sbjct 10 MYKLEKAQAKQVVGGLSFWTFSAGLIMIVNALTGVAHAVNDIFQST---TANANGSDDDN 66 Query 61 KRRN----SQKDYFSTGRFRLGLTPGKSSYSFPV 90 + +N S+ +YF+T RF+LGLTPG SSYSFPV Sbjct 67 ENKNNSYRSKSNYFNTARFKLGLTPGSSSYSFPV 100 Lambda K H a alpha 0.314 0.128 0.358 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5060050 Query= gi|13508053|ref|NP_110002.1| hypothetical protein MPN314 [Mycoplasma pneumoniae M129] Length=141 Score E Sequences producing significant alignments: (Bits) Value gi|12045076|ref|NP_072887.1| hypothetical protein MG221 [Mycoplas... 245 5e-87 >gi|12045076|ref|NP_072887.1| hypothetical protein MG221 [Mycoplasma genitalium G-37] Length=154 Score = 245 bits (626), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 115/141 (82%), Positives = 130/141 (92%), Gaps = 0/141 (0%) Query 1 MLLGTFNITLDAKNRISLPAKLRAFFEGSIVINRGFENCLEVRKPQDFQKYFEQFNSFPS 60 MLLGTFN+TLD KNRISLPAKLR+FF+ SIVINRGFENCLE+RKP DF+ YF+ FN+FP+ Sbjct 14 MLLGTFNLTLDNKNRISLPAKLRSFFDSSIVINRGFENCLEIRKPADFESYFQTFNNFPN 73 Query 61 TQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWDKKLY 120 TQKDTRTLKRLIFANAN V++D+A R+LIPNNLI+DAKLDKEIVLIGQFDHLE+WDK Y Sbjct 74 TQKDTRTLKRLIFANANLVELDSANRILIPNNLISDAKLDKEIVLIGQFDHLEVWDKVQY 133 Query 121 EDYLANSESLETVAERMKDVK 141 E YLA+SESLETVAERMKD K Sbjct 134 EQYLASSESLETVAERMKDAK 154 Lambda K H a alpha 0.321 0.138 0.393 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11527759 Query= gi|13508054|ref|NP_110003.1| SAM-Dependent Methytransferase (Koonin for MG ortholog) [Mycoplasma pneumoniae M129] Length=308 Score E Sequences producing significant alignments: (Bits) Value gi|12045077|ref|NP_072888.1| hypothetical protein MG222 [Mycoplas... 412 1e-147 >gi|12045077|ref|NP_072888.1| hypothetical protein MG222 [Mycoplasma genitalium G-37] Length=309 Score = 412 bits (1058), Expect = 1e-147, Method: Compositional matrix adjust. Identities = 201/308 (65%), Positives = 250/308 (81%), Gaps = 1/308 (0%) Query 1 MLSNQP-HKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDS 59 ML+NQ H+SVL++EVIHNLNI GNYLDLT GF GHSQ ILE+LTTGTLT ND+DK+S Sbjct 1 MLNNQQIHQSVLINEVIHNLNINPCGNYLDLTAGFAGHSQKILEKLTTGTLTINDVDKES 60 Query 60 ITFCTELFKDKKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFK 119 I FC +LF NVV++HDNFANF HLKQL +TKFDGIL+DLGVSS+QL++P RGFSFK Sbjct 61 INFCQKLFFKNNNVVIIHDNFANFPVHLKQLSITKFDGILMDLGVSSHQLNQPNRGFSFK 120 Query 120 HAGPFDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNTKNP 179 + GP DMRM QS++ TAL +L+ L+E++L+ +LKK+G+I HPKPIA LK + KN Sbjct 121 NDGPIDMRMDQSNQKNTALTVLKNLTEQKLSLILKKYGDIKHPKPIAIGLKKAVQTEKNL 180 Query 180 TTVEVAETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRF 239 TT ++A+ VK A+ FEKY+SRNYLAKVFQAIRIYLN E+ +L+ L IP LL N RF Sbjct 181 TTTQLAKVVKECATGFEKYQSRNYLAKVFQAIRIYLNDEITNLKTALTFIPNLLKNNSRF 240 Query 240 LVIVFHSLEEKLVRNYIFKLTHFVQPPELPVKLTPPFELITKKPILPTEQEIKTNPRVRS 299 LVIVFHS+EEK+VRN+I KLT F+QP LP+KLTP ++LITKKPILP+++E++ NPR RS Sbjct 241 LVIVFHSIEEKIVRNFIAKLTSFIQPEALPIKLTPAYQLITKKPILPSQKELELNPRSRS 300 Query 300 AKLFVIEK 307 AKLFVI+K Sbjct 301 AKLFVIQK 308 Lambda K H a alpha 0.319 0.137 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33807662 Query= gi|13508055|ref|NP_110004.1| hypothetical protein MPN316 [Mycoplasma pneumoniae M129] Length=419 Score E Sequences producing significant alignments: (Bits) Value gi|12045078|ref|NP_072889.1| hypothetical protein MG223 [Mycoplas... 402 1e-140 >gi|12045078|ref|NP_072889.1| hypothetical protein MG223 [Mycoplasma genitalium G-37] Length=411 Score = 402 bits (1034), Expect = 1e-140, Method: Compositional matrix adjust. Identities = 210/423 (50%), Positives = 309/423 (73%), Gaps = 16/423 (4%) Query 1 MYNLKNIYASITLYPHEINLVVSDNNNQFHVLYENSIANDELYTHAGITNKAKFKVVLNQ 60 MY KNI + +T Y +I LVVSD+ NQF++L+ +I ND Y+ + NK + K+ LNQ Sbjct 1 MYKPKNINSVLTFYKDQIQLVVSDDQNQFNILFYQTIDNDGFYSKQQLKNKLRLKLALNQ 60 Query 61 LINNANDYLGFKLEKVIVVLAELVDDLEINRFKTDVFFTGYDFNHQDMLSSEKNRFLLKN 120 L++ AN +LGFKLEKV+VVLAEL+DDL+I+ FK+++FFTGYDF+H+ M+ EK RF +N Sbjct 61 LVDQANYFLGFKLEKVVVVLAELIDDLKIHNFKSEIFFTGYDFDHKAMIKKEKQRFCEQN 120 Query 121 RHINPNEVLDLVALNYRDLTTDKISKNFKYNCSYRANVIYYTTKNSLVKELKPFLKRNII 180 + V+D + LNY D+ +KI+K+F +N SY AN++ Y++K++L+ ELK FLKRN+ Sbjct 121 NQLT---VMDTMVLNYHDVINNKITKSFAFNKSYVANLVAYSSKSNLIGELKFFLKRNVN 177 Query 181 VKIDKIVTHHMVLAHSIKQINKNNLFVYLGEHTTDLMLFMDNALVDLVSEPFGRVNFLES 240 +K+ KI++HH+ LA+S+ + +NN+FVYLG+ TT+LMLFMDNALVD+++ FG+ +F++ Sbjct 178 LKVKKIISHHLALANSLSK-KQNNMFVYLGQKTTELMLFMDNALVDVITNQFGKNHFIDI 236 Query 241 DNDSENKALLEFLVDSTARIGDSGSIGMAYTDGSTYKEIRAVTIDDLIQSVNEKTKYLID 300 + ENK LLEFLVD+T +IGD S+GM YTDG +YKEI+A+TI DL+Q+V++K K LID Sbjct 237 PANQENKPLLEFLVDNTTKIGDCYSLGMTYTDGDSYKEIKALTIGDLMQTVSDKIKTLID 296 Query 301 FINTNTEIFFQKYGFLPSTLLFYTKSKQLLNNFQLNQNLLSNHFKTVTIFKNEVQFVSRK 360 FIN+ + FF K+ LP L FYT+SKQ+ N FQ N L++ FKTV I+KN++QF+S Sbjct 297 FINSGSLTFFNKFKTLPKLLYFYTRSKQITNLFQANVALINPQFKTVDIYKNKIQFISEN 356 Query 361 YLLNCQTIALSWR---QDQINVNPTSFALPFYSDKIEK-QFKKSFLMLKVHTHINKLVQK 416 YLL+C+ I+L ++QI+ + T+ +D I+K + KK F++L H+ K VQ+ Sbjct 357 YLLSCEAISLQITNRIKNQISFDFTN------ADNIQKPKPKKHFMIL--SKHLTKFVQR 408 Query 417 LIK 419 L+K Sbjct 409 LVK 411 Lambda K H a alpha 0.321 0.136 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 48646562 Query= gi|13508056|ref|NP_110005.1| cell division protein FtsZ [Mycoplasma pneumoniae M129] Length=380 Score E Sequences producing significant alignments: (Bits) Value gi|12045079|ref|NP_072890.1| cell division protein (ftsZ) [Mycopl... 388 5e-136 >gi|12045079|ref|NP_072890.1| cell division protein (ftsZ) [Mycoplasma genitalium G-37] Length=369 Score = 388 bits (996), Expect = 5e-136, Method: Compositional matrix adjust. Identities = 201/361 (56%), Positives = 261/361 (72%), Gaps = 10/361 (3%) Query 15 ENNIKIAVFGIGGAGNNIIDDMLRMHPELQTANVQFFALNTDLQHLKTKRYVQNKAVIQF 74 +N +KI VFGIGGAGNNI+D L +P L + N+ F+A+N+DLQHL K V+NK +IQ Sbjct 15 KNKLKIGVFGIGGAGNNIVDASLYHYPNLASENIHFYAINSDLQHLAFKTNVKNKLLIQD 74 Query 75 EESKGLGVGGDPQKGAVLAHHFLEQFHKLSDSFDFCILVAGFGKGTGTGATPVFSKFLSN 134 +KG G GGDP KGA LA F EQF+ L+D +DFCILVAGFGKGTGTGATPVFSK L Sbjct 75 HTNKGFGAGGDPAKGASLAISFQEQFNTLTDGYDFCILVAGFGKGTGTGATPVFSKILKT 134 Query 135 KGVLNLSIVSYPAMCEGLKAREKAAKGLERLNQATDSFMLFRNDRCTDGIYQLANVAIVK 194 K +LN++IV+YP++ EGL R KA KGLE LN+ATDS+MLF N++CT+GIYQLAN IV Sbjct 135 KKILNVAIVTYPSLNEGLTVRNKATKGLEILNKATDSYMLFCNEKCTNGIYQLANTEIVS 194 Query 195 TIKNIIELINLPLQQNIDFEDIRSFFKKPAQRLENEANLFRVTNTFTFSFDAHNTIEHFS 254 IKN+IELI +PLQQNIDFED+R+FF+ ++ + LF VT+ F+FSFD+ ++IE F+ Sbjct 195 AIKNLIELITIPLQQNIDFEDVRAFFQ--TKKTNQDQQLFTVTHPFSFSFDSKDSIEQFA 252 Query 255 HKLKNFEYEGFFDHKVEGAQKVILKVLVNQGLYPLDLTQIQEIIWAKIDNHNLEVQLGVD 314 + KNFE +FDH + GA+KV+LK +NQ + L+ QIQ+IIW KIDN+ LE++LGVD Sbjct 253 KQFKNFEKVSYFDHSIVGAKKVLLKANINQKIVKLNFKQIQDIIWTKIDNYQLEIRLGVD 312 Query 315 FTDANPSVQLFFLMEKKQAVSSDFIQKPAFISVKEVNQKPAKPFQVLNDLKELGLKYVKQ 374 F P++Q+F L E K VS K E NQ ++L++LKELG+KYVK Sbjct 313 FVTTIPNIQIFILSEHKNPVSLPIDNKST-----ENNQNKL---KLLDELKELGMKYVKH 364 Query 375 Q 375 Q Sbjct 365 Q 365 Lambda K H a alpha 0.321 0.138 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 43452948 Query= gi|13508057|ref|NP_110006.1| amino acid permease [Mycoplasma pneumoniae M129] Length=491 Score E Sequences producing significant alignments: (Bits) Value gi|12045080|ref|NP_072891.1| hypothetical protein MG225 [Mycoplas... 653 0.0 gi|12045081|ref|NP_072892.1| hypothetical protein MG226 [Mycoplas... 206 8e-63 >gi|12045080|ref|NP_072891.1| hypothetical protein MG225 [Mycoplasma genitalium G-37] Length=489 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/489 (69%), Positives = 405/489 (83%), Gaps = 4/489 (1%) Query 1 MAVASKKFTERQFLFFVVNYIAGFGFISTALSLFELGPLSWVIFFLVSLISLIVTLAFAR 60 M ++KF+E+QFL FVVNYIAGFGFI+TA+SLF LGP SW+IF LVSL+SLIVTL+FAR Sbjct 1 MGQINRKFSEKQFLLFVVNYIAGFGFIATAISLFRLGPFSWLIFLLVSLVSLIVTLSFAR 60 Query 61 VSAIDKNNYGGAYLWAKKAFNSERYSHRLFIFFTGWNNFIASPLYAAIAPLFILSAFKGI 120 +S+ID NYGG YLWAKKA + E+ + R+F FFTGWNNFI PL AA APLFIL++F GI Sbjct 61 LSSIDSQNYGGPYLWAKKAVDKEKIAGRMFSFFTGWNNFIIGPLSAATAPLFILNSFSGI 120 Query 121 DGIQGNAANTWILIAAGFTFYLLLAFLSTKGTSLNKKLIAVFASIKWAVLLSTLIVALIV 180 DGI+GN NTWILIA GF+FY+LLAF+STKGTSLNKKLIA+FAS+KW V+LS LIVA+ V Sbjct 121 DGIRGNLVNTWILIAIGFSFYVLLAFISTKGTSLNKKLIALFASVKWIVILSALIVAIYV 180 Query 181 IGKNGNGYAINNDIKQGPFKEREITLGAVATVFITFFYSYSGAEDISTMTPDVKTTNFRK 240 I ++GNGY+ NN+++ G F REI+ +ATVFITFFYSY+G EDIS MTPDVKT NFRK Sbjct 181 IARDGNGYSQNNNLESGFFGRREISFAQIATVFITFFYSYAGVEDISVMTPDVKTNNFRK 240 Query 241 ILIISFIAVFLFYFVGILIFNGLLNVSQSDDDKGKDGRIASVADIFRLAGGLGALIFYGV 300 ILI+SFIAVFLFYF+GI+I NGL N++Q G+ I +VADIF+ A GLG LIFYGV Sbjct 241 ILIVSFIAVFLFYFIGIIILNGLQNIAQRG---GEANSIGNVADIFKKAAGLGTLIFYGV 297 Query 301 GALFNNVSTRLSTIIANSRKILPLAQDNYLPTTFSKANSKGEFQNAIWFTFGTTIITMTV 360 GALFNNVSTRLSTIIANSRKILPLA DNYLP+ F K N KGEFQNAIWFTFGTT+I MT+ Sbjct 298 GALFNNVSTRLSTIIANSRKILPLAYDNYLPSFFYKQNKKGEFQNAIWFTFGTTLIAMTL 357 Query 361 LFFVPLITSNFDFDKSTEYASSIGSAATLVQYILVFFIIFRLIYKKEQLYQKNWTRELEQ 420 L F+PL+ SNFDFD +TEYA+S+GSAATL+QYI VFFIIF+ IYKKE LYQK W + E+ Sbjct 358 LVFIPLVASNFDFDNATEYAASVGSAATLLQYIFVFFIIFKFIYKKEPLYQKKWVKTTEE 417 Query 421 ILFGIGVFIILLMLLFYLFPVIDGKTKWQLKNTLTLVVYGVLILIGFALFMTQEYK-RNK 479 +LF +G +I+LMLL YLFPVIDG +KW+ K+TLT+V+YGVL LIG LF+ QEYK +NK Sbjct 418 LLFCLGTIVIVLMLLVYLFPVIDGFSKWETKHTLTIVLYGVLSLIGLVLFLLQEYKHKNK 477 Query 480 QKESYVTPR 488 Q + T + Sbjct 478 QNANKQTTQ 486 >gi|12045081|ref|NP_072892.1| hypothetical protein MG226 [Mycoplasma genitalium G-37] Length=459 Score = 206 bits (524), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 143/463 (31%), Positives = 241/463 (52%), Gaps = 24/463 (5%) Query 31 LSLFELGPLSWVIFFLVSLISLIVTLAFARVSAIDKNN-YGGAYLWAKKAFNSERYSHRL 89 +++F++GP S+++ L S L V L+F+R+S + N+ YGG+YL AKKA + + R Sbjct 1 MTMFDVGPFSYLVLGLTSFAILGVVLSFSRLSVLCGNSAYGGSYLIAKKAVGTNSKTKRF 60 Query 90 FIFFTGWNNFIASPLYAAIAPLFILSAFKGIDGIQGNAANTWILIAAGFTFYLLLAFLST 149 F+F +GWN + + P ++ +F I ++ N L+ GF + LL F+S Sbjct 61 FVFLSGWNVSLTGSFNGVVIPAVLIFSFADIPVVKANNNIIIGLLVGGFLLFGLLTFISL 120 Query 150 KGTSLNKKLIAVFASIKWAVLLSTLIVALIVIGK-NGNGYAINNDIKQGPFKEREITLGA 208 G +NKK I FA IKW V++ I+ + +IG NG G+ NN I I Sbjct 121 FGLKINKKAIFYFAVIKWIVVIGGFILGIYLIGTTNGKGFVENNLIGT----RENIDFFK 176 Query 209 VATVFITFFYSYSGAEDISTMTPDVKTTNFRKILIISFIAVFLFYFVGILIFNGLLNVSQ 268 + + + +++G ED++++TPDVK+ N RK +I+F V L Y VG +I +GL + Sbjct 177 IIFISLALTIAFAGTEDLASITPDVKSNNLRKCFLIAFGCVVLLYLVGFVIISGLDGIRG 236 Query 269 SDDDKG-KDGR-IASVADIFRLAGGLGALIFYGVGALFNNVSTRLSTIIANSRKILPLAQ 326 G KD + I + I+RL GG+ L+ YG+G L N++++RLS I +RK + LAQ Sbjct 237 YGLALGNKDPKAINNYGSIYRLVGGVPLLVIYGLGLLVNSLASRLSMTITTARKYVALAQ 296 Query 327 DNYLPTTFSKANSKGEFQNAIWFTFGTTIITMTVLFFVPLITSNF--------DFDKSTE 378 D +LP+ +K N E+ +A+ + T++ M ++ +P + + ++ Sbjct 297 DGFLPSFLAKTNKHNEYHHAVLISNLMTLLVMLIMVIIPFLPDHNNNNNSLFNAIEQLVT 356 Query 379 YASSIGSAATLVQYILVFFIIFRLIYKKEQLYQKNWTRELEQILFGIGVFIILLMLLFYL 438 + +A +L+QY + F F + KKE + E++ + I ++ ++L L Sbjct 357 VTIEMAAAISLIQYFITFIFFFMIFAKKE---NQKLIPLWEKVSYVISFALVSVLLFVPL 413 Query 439 FPVIDGKTKWQLKNTLTLVVYGVLILIGFALFMTQEYKRNKQK 481 FP +W + NT +VV L+G F E+K NK K Sbjct 414 FPF----NQWTVFNTFKIVVLICFYLLGVGFFGYAEWK-NKNK 451 Lambda K H a alpha 0.328 0.142 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 58427121 Query= gi|13508058|ref|NP_110007.1| general amino acid permease GAP1 homolog; similar to Swiss-Prot Accession Number P19145, from S. cerevisiae [Mycoplasma pneumoniae M129] Length=503 Score E Sequences producing significant alignments: (Bits) Value gi|12045081|ref|NP_072892.1| hypothetical protein MG226 [Mycoplas... 550 0.0 gi|12045080|ref|NP_072891.1| hypothetical protein MG225 [Mycoplas... 258 5e-82 >gi|12045081|ref|NP_072892.1| hypothetical protein MG226 [Mycoplasma genitalium G-37] Length=459 Score = 550 bits (1418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/458 (64%), Positives = 358/458 (78%), Gaps = 7/458 (2%) Query 38 LTMFKLGPFSYLILGLAALGILGVMLSFSRLSIICGSKAYGGSYLIAKKALGVKTITARF 97 +TMF +GPFSYL+LGL + ILGV+LSFSRLS++CG+ AYGGSYLIAKKA+G + T RF Sbjct 1 MTMFDVGPFSYLVLGLTSFAILGVVLSFSRLSVLCGNSAYGGSYLIAKKAVGTNSKTKRF 60 Query 98 FTFLSGWNVSLTGPFNGLIVPAVLVLSFADIKAVKDNNGALIGLLVGGFVLFGALNFISL 157 F FLSGWNVSLTG FNG+++PAVL+ SFADI VK NN +IGLLVGGF+LFG L FISL Sbjct 61 FVFLSGWNVSLTGSFNGVVIPAVLIFSFADIPVVKANNNIIIGLLVGGFLLFGLLTFISL 120 Query 158 FGLKMNKNAILFFAIVKWVVVLGGLILGIYLIGTNHGHGFVENNTLGEHIEDLSFLKVIS 217 FGLK+NK AI +FA++KW+VV+GG ILGIYLIGT +G GFVENN +G E++ F K+I Sbjct 121 FGLKINKKAIFYFAVIKWIVVIGGFILGIYLIGTTNGKGFVENNLIGTR-ENIDFFKIIF 179 Query 218 TTVGMLVAFAGTEDLTAITPDVKSKNIRKCFLLMFGAVTLLYLIGFVIISGISGLNGYGL 277 ++ + +AFAGTEDL +ITPDVKS N+RKCFL+ FG V LLYL+GFVIISG+ G+ GYGL Sbjct 180 ISLALTIAFAGTEDLASITPDVKSNNLRKCFLIAFGCVVLLYLVGFVIISGLDGIRGYGL 239 Query 278 DGKEKNEKAINTFGSIYFQAGGKYLGIPLLVIFGLGFLLNSLASRLGMTITTARKYVALA 337 K+ KAIN +GSIY G G+PLLVI+GLG L+NSLASRL MTITTARKYVALA Sbjct 240 ALGNKDPKAINNYGSIYRLVG----GVPLLVIYGLGLLVNSLASRLSMTITTARKYVALA 295 Query 338 QDGFLPSFINEQNKHHEYHKAVWASNIMTLAVMVLMIIVPFLPNDENPGKQLVMFDAISV 397 QDGFLPSF+ + NKH+EYH AV SN+MTL VM++M+I+PFLP+ N L F+AI Sbjct 296 QDGFLPSFLAKTNKHNEYHHAVLISNLMTLLVMLIMVIIPFLPDHNNNNNSL--FNAIEQ 353 Query 398 LVEVAIELAVLISLIQYFITYIFFFMILAKKEGSASVSWWEIASYGVSFAIITVLLFVNL 457 LV V IE+A ISLIQYFIT+IFFFMI AKKE + WE SY +SFA+++VLLFV L Sbjct 354 LVTVTIEMAAAISLIQYFITFIFFFMIFAKKENQKLIPLWEKVSYVISFALVSVLLFVPL 413 Query 458 FPITAWKNTNTFKLSILAAFFALGIGFFIHSEIKHKGQ 495 FP W NTFK+ +L F+ LG+GFF ++E K+K + Sbjct 414 FPFNQWTVFNTFKIVVLICFYLLGVGFFGYAEWKNKNK 451 >gi|12045080|ref|NP_072891.1| hypothetical protein MG225 [Mycoplasma genitalium G-37] Length=489 Score = 258 bits (658), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 172/494 (35%), Positives = 272/494 (55%), Gaps = 31/494 (6%) Query 12 RQQFSEKQFIAFAFNYVAGFGFISVVLTMFKLGPFSYLILGLAALGILGVMLSFSRLSII 71 ++FSEKQF+ F NY+AGFGFI+ +++F+LGPFS+LI L +L L V LSF+RLS I Sbjct 5 NRKFSEKQFLLFVVNYIAGFGFIATAISLFRLGPFSWLIFLLVSLVSLIVTLSFARLSSI 64 Query 72 CGSKAYGGSYLIAKKALGVKTITARFFTFLSGWNVSLTGPFNGLIVPAVLVLSFADIKAV 131 S+ YGG YL AKKA+ + I R F+F +GWN + GP + P ++ SF+ I + Sbjct 65 -DSQNYGGPYLWAKKAVDKEKIAGRMFSFFTGWNNFIIGPLSAATAPLFILNSFSGIDGI 123 Query 132 KDNNGALIGLLVGGFVLFGALNFISLFGLKMNKNAILFFAIVKWVVVLGGLILGIYLIGT 191 + N L+ GF + L FIS G +NK I FA VKW+V+L LI+ IY+I Sbjct 124 RGNLVNTWILIAIGFSFYVLLAFISTKGTSLNKKLIALFASVKWIVILSALIVAIYVIAR 183 Query 192 NHGHGFVENNTLGEHI---EDLSFLKVISTTVGMLVAFAGTEDLTAITPDVKSKNIRKCF 248 + G+G+ +NN L ++SF ++ + + ++AG ED++ +TPDVK+ N RK Sbjct 184 D-GNGYSQNNNLESGFFGRREISFAQIATVFITFFYSYAGVEDISVMTPDVKTNNFRKIL 242 Query 249 LLMFGAVTLLYLIGFVIISGISGLNGYGLDGKEKNEKAINTFGSIYFQAGGKYLGIPLLV 308 ++ F AV L Y IG +I++G+ + G E N +I I+ +A G LG L+ Sbjct 243 IVSFIAVFLFYFIGIIILNGLQNI---AQRGGEAN--SIGNVADIFKKAAG--LGT--LI 293 Query 309 IFGLGFLLNSLASRLGMTITTARKYVALAQDGFLPSFINEQNKHHEYHKAVWASNIMTLA 368 +G+G L N++++RL I +RK + LA D +LPSF +QNK E+ A+W + TL Sbjct 294 FYGVGALFNNVSTRLSTIIANSRKILPLAYDNYLPSFFYKQNKKGEFQNAIWFTFGTTLI 353 Query 369 VMVLMIIVPFLPNDENPGKQLVMFDAISVLVEVAIELAVLISLIQYFITYIFFFMILAKK 428 M L++ +P + ++ + FD + E A + +L+QY + F + KK Sbjct 354 AMTLLVFIPLVASNFD-------FDNAT---EYAASVGSAATLLQYIFVFFIIFKFIYKK 403 Query 429 EGSASVSWWEIAS---YGVSFAIITVLLFVNLFPI----TAWKNTNTFKLSILAAFFALG 481 E W + + + +I ++L V LFP+ + W+ +T + + +G Sbjct 404 EPLYQKKWVKTTEELLFCLGTIVIVLMLLVYLFPVIDGFSKWETKHTLTIVLYGVLSLIG 463 Query 482 IGFFIHSEIKHKGQ 495 + F+ E KHK + Sbjct 464 LVLFLLQEYKHKNK 477 Lambda K H a alpha 0.328 0.144 0.425 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 60108477 Query= gi|13508059|ref|NP_110008.1| thymidylate synthase [Mycoplasma pneumoniae M129] Length=328 Score E Sequences producing significant alignments: (Bits) Value gi|12045082|ref|NP_072893.1| thymidylate synthase (thyA) [Mycopla... 451 6e-163 >gi|12045082|ref|NP_072893.1| thymidylate synthase (thyA) [Mycoplasma genitalium G-37] Length=287 Score = 451 bits (1159), Expect = 6e-163, Method: Compositional matrix adjust. Identities = 213/287 (74%), Positives = 247/287 (86%), Gaps = 0/287 (0%) Query 42 MQQYLDLARYVLEHGKYRPNRTDTAGIGVFGYQMHFDISKHFPLLTTKKVHWKSIVHELL 101 M+QYLDLA YVL +GK R NRTDT + VFGYQM FD++ FPLLTTKKV+WK+IVHELL Sbjct 1 MKQYLDLASYVLANGKKRKNRTDTDTLSVFGYQMKFDLTNSFPLLTTKKVNWKAIVHELL 60 Query 102 WFIKGDTNIKYLVDNKVNIWNEWPYESFKKSPHFNGESQKEFIERIRQDAKFAQQFGNLG 161 WFIKGDTNIKYLVDN VNIWNEWPYE+FKKSP F E+ +EFI +++ D +FA+QF +LG Sbjct 61 WFIKGDTNIKYLVDNGVNIWNEWPYENFKKSPSFQNETLQEFILKVKTDNEFAKQFADLG 120 Query 162 PVYGKQWRDFNGVDQLKKVIAQIKVNPFSRRLIVSSWNPNEVDQMLLPPCHSLYQFYVQD 221 PVYGKQWR+FNGVDQLKKVI +IK NP SRRLIVSSWNP+E+++M L PCHSL+QFYV++ Sbjct 121 PVYGKQWRNFNGVDQLKKVIQEIKENPNSRRLIVSSWNPSELEKMALAPCHSLFQFYVEE 180 Query 222 GQLSCQLYQRSGDIFLGIPFNIASYSLLVYLVAKETNLKPGSFVHTIGDAHIYENHLEQI 281 +LS QLYQRSGDIFLG+PFNIASY+LLVYLVA ET LKPG F+HT+GDAHIYENH+EQI Sbjct 181 DKLSLQLYQRSGDIFLGVPFNIASYALLVYLVAHETKLKPGYFIHTLGDAHIYENHIEQI 240 Query 282 KLQLTRQPKPLPKVVLKSDKSIFDYQFDDIELVDYDHHPTIKGEVAV 328 KLQLTR P+VVLKSDKSIF Y FDDIELV Y++HP I G VAV Sbjct 241 KLQLTRTTLDPPQVVLKSDKSIFAYSFDDIELVGYNYHPFIYGRVAV 287 Lambda K H a alpha 0.323 0.140 0.434 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36382205 Query= gi|13508060|ref|NP_110009.1| dihydrofolate reductase (EC 1.5.1.3) [Mycoplasma pneumoniae M129] Length=160 Score E Sequences producing significant alignments: (Bits) Value gi|12045083|ref|NP_072894.1| dihydrofolate reductase (dhfR) [Myco... 174 2e-58 >gi|12045083|ref|NP_072894.1| dihydrofolate reductase (dhfR) [Mycoplasma genitalium G-37] Length=160 Score = 174 bits (441), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 82/157 (52%), Positives = 107/157 (68%), Gaps = 0/157 (0%) Query 1 MVKAIWAMDQNGLIGNGNSLPWRIKAELQHFRQTTLHQDVLMGSATYLSLPPVFSERNVY 60 M+ AIWAM Q GLIGN N+LPW IK EL HF++TTL Q +LMG TY SLP VF +R ++ Sbjct 1 MLIAIWAMTQEGLIGNNNTLPWMIKQELAHFKKTTLFQALLMGRKTYESLPKVFEKRTIF 60 Query 61 ILTRNLNFNPPDKGCLTKVIHEYENFIQPYLHHPDKHLYICGGAQVYEQLIPRCDALIVS 120 +L+++ N+ +KG KVI+++ I+ Y + +K L+ICGG VYEQ I CD LIVS Sbjct 61 LLSKDQNYRFEEKGSEVKVINDFWPLIKSYQANKEKDLFICGGKSVYEQTINECDQLIVS 120 Query 121 TIFGKYTGDKYLKVDFSPFELTKEISFAEFKVAYYHK 157 I KY GD++LKVD S F L + + F EF V YY K Sbjct 121 IIKKKYKGDQFLKVDLSKFVLNEVVEFEEFNVNYYRK 157 Lambda K H a alpha 0.324 0.140 0.440 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13915488 Query= gi|13508061|ref|NP_110010.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma pneumoniae M129] Length=339 Score E Sequences producing significant alignments: (Bits) Value gi|12045084|ref|NP_072895.1| ribonucleoside-diphosphate reductase... 634 0.0 >gi|12045084|ref|NP_072895.1| ribonucleoside-diphosphate reductase, beta chain (nrdF) [Mycoplasma genitalium G-37] Length=340 Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/338 (90%), Positives = 315/338 (93%), Gaps = 0/338 (0%) Query 2 ANTKKYFLESVSPLEYAQKKFQGNLRSVNWNLVDDEKDLEVWNRITQNFWLPEKIPVSND 61 AN KKYFLES SPL Y + FQGNLRSVNWNLVDDEKDLEVWNRI QNFWLPEKIPVSND Sbjct 3 ANNKKYFLESFSPLGYVKNNFQGNLRSVNWNLVDDEKDLEVWNRIVQNFWLPEKIPVSND 62 Query 62 IPSWKQLSKEWQDLITKTFTGLTLLDTIQATIGDIKQIDYALTDHEQVIYANFAFMVGVH 121 IPSWK+LSK+WQDLITKTFTGLTLLDTIQATIGDI QID+ALTDHEQVIYANFAFMVGVH Sbjct 63 IPSWKKLSKDWQDLITKTFTGLTLLDTIQATIGDICQIDHALTDHEQVIYANFAFMVGVH 122 Query 122 ARSYGTIFSTLCTSEQITEAHEWVVKTESLQKRAKALIPYYTGKDPLKSKVAAALMPGFL 181 ARSYGTIFSTLCTSEQI AHEWVV TESLQKRAKALIPYYTG DPLKSKVAAALMPGFL Sbjct 123 ARSYGTIFSTLCTSEQINAAHEWVVNTESLQKRAKALIPYYTGNDPLKSKVAAALMPGFL 182 Query 182 LYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYKFQRKVEKMSKEKQAEMKRF 241 LYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYK+QRK+EK+ KQ EMK F Sbjct 183 LYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYKYQRKLEKLPLAKQKEMKAF 242 Query 242 VFDLMYELIELEKAYLKELYEGFGIVEDAIKFSIYNAGKFLQNLGYDSPFTEEETRIKPE 301 VF+LMY LIELEK YLKELYEGFGIV+DAIKFS+YNAGKFLQNLGYDSPFT ETRIKPE Sbjct 243 VFELMYRLIELEKDYLKELYEGFGIVDDAIKFSVYNAGKFLQNLGYDSPFTAAETRIKPE 302 Query 302 IFAQLSARADENHDFFSGNGSSYVMGISEETEDKDWDF 339 IFAQLSARADENHDFFSGNGSSYVMG+SEET D DW+F Sbjct 303 IFAQLSARADENHDFFSGNGSSYVMGVSEETNDDDWNF 340 Lambda K H a alpha 0.318 0.135 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37939420 Query= gi|13508062|ref|NP_110011.1| probably nrdI [Mycoplasma pneumoniae M129] Length=153 Score E Sequences producing significant alignments: (Bits) Value gi|12045085|ref|NP_072896.1| nrdI protein (nrdI) [Mycoplasma geni... 239 3e-84 >gi|12045085|ref|NP_072896.1| nrdI protein (nrdI) [Mycoplasma genitalium G-37] Length=153 Score = 239 bits (609), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 111/149 (74%), Positives = 127/149 (85%), Gaps = 0/149 (0%) Query 1 MHKDIKIVDASAIVKPTGTPYVVYFSSISNNTHRFIEKLEFEHTRIPVNLDEQIEVNQEY 60 MHKDIK+V + I KP G+P++VYFSSISNNTHRFIEKL F+H RIPV++ + I V+ EY Sbjct 1 MHKDIKLVKETEIRKPIGSPFIVYFSSISNNTHRFIEKLGFQHKRIPVDITQSITVSNEY 60 Query 61 VLFCPTYSGGGEYTSGAVPKQVIHFLNNKHNRDLCRGVISSGNTNFGNTFAIAGPILSKK 120 VL CPTYSGGG GAVPKQVI FLNNKHNR+LCRGVI+SGNTNFG+TF +AG ++SKK Sbjct 61 VLICPTYSGGGNQVEGAVPKQVIQFLNNKHNRELCRGVIASGNTNFGDTFCLAGTVISKK 120 Query 121 LNVPLLYQFELLGTKNDVEQVQTIITNFF 149 LNVPLLYQFELLGTKNDVEQ Q II NFF Sbjct 121 LNVPLLYQFELLGTKNDVEQTQKIIANFF 149 Lambda K H a alpha 0.319 0.137 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13089330 Query= gi|13508063|ref|NP_110012.1| ribonucleoside-diphosphate reductase alpha chain) [Mycoplasma pneumoniae M129] Length=721 Score E Sequences producing significant alignments: (Bits) Value gi|12045086|ref|NP_072897.1| ribonucleoside-diphosphate reductase... 1330 0.0 >gi|12045086|ref|NP_072897.1| ribonucleoside-diphosphate reductase, alpha chain (nrdE) [Mycoplasma genitalium G-37] Length=721 Score = 1330 bits (3442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 629/721 (87%), Positives = 680/721 (94%), Gaps = 0/721 (0%) Query 1 MSVKEKIPAFNTQEDLESYISLNAYTKVYGDFKMDLHAVEAYIQEHVKPKTKVFHSTKER 60 M+ KEKIP FNT+ED+ESYIS NA K+Y DF +DL AVE+YIQEHVKPKTKVFHSTKER Sbjct 1 MTSKEKIPTFNTEEDVESYISFNAQAKIYDDFAIDLQAVESYIQEHVKPKTKVFHSTKER 60 Query 61 LDFLVKNDYYDENIINMYSFEQFEEITRKAYAYRFRYANFMGAFKFYNAYALKTFDGKWY 120 LDFL+KNDYYDE IINMYSFEQFEEIT KAY+YRFRYANFMGAFKFYNAYALKTFDGK+Y Sbjct 61 LDFLIKNDYYDEKIINMYSFEQFEEITHKAYSYRFRYANFMGAFKFYNAYALKTFDGKYY 120 Query 121 LENYEDRVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVSCYLLR 180 LENYEDRVVMNVL LANGN+NKALKLLKQII NRFQPATPTFLNAGRKKRGEFVSCYLLR Sbjct 121 LENYEDRVVMNVLMLANGNFNKALKLLKQIILNRFQPATPTFLNAGRKKRGEFVSCYLLR 180 Query 181 IEDNMESIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSGIIPIMKLLEDSF 240 IEDNMESIGRAITTTLQLSKRDGGVALLL+N+RE+GAPIKKIENQSSGIIPIMKLLEDSF Sbjct 181 IEDNMESIGRAITTTLQLSKRDGGVALLLSNLREAGAPIKKIENQSSGIIPIMKLLEDSF 240 Query 241 SYANQLGQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFTLAKN 300 SY+NQLGQRQGAGAVYLH HHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITF LAKN Sbjct 241 SYSNQLGQRQGAGAVYLHCHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFQLAKN 300 Query 301 NEEMALFSPYDVYEEYGKPLSDISVTEMYYELLANQRIKKTFINARKFFQTVAELHFESG 360 NE MALFSPYD+Y+EYGK LSDISVTEMYYELL NQRIKKTFI+ARKFFQT+AELHFESG Sbjct 301 NEMMALFSPYDIYQEYGKALSDISVTEMYYELLENQRIKKTFISARKFFQTIAELHFESG 360 Query 361 YPYILFDDTVNRRNAHPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDISCNLGSLNI 420 YPYILFDDTVNRRNAH NRIVMSNLCSEIVQPS PSEF+ DL FKKVG+DISCNLGSLNI Sbjct 361 YPYILFDDTVNRRNAHKNRIVMSNLCSEIVQPSLPSEFYSDLTFKKVGSDISCNLGSLNI 420 Query 421 AKAMESGPEFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALGLGAMNLHGFLATN 480 A+AMESG E +EL++LAIESLDLVSR+S+LETAPSI+KGNSENHALGLGAMNLHGFLATN Sbjct 421 ARAMESGSELAELIQLAIESLDLVSRISSLETAPSIKKGNSENHALGLGAMNLHGFLATN 480 Query 481 QIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFADGSYFDKYIKVEP 540 IYY+S EA+DFTNIFFYTVAYHAF AS++LALE GKFK+FENTKFADGSYFDKY KV Sbjct 481 AIYYDSKEAVDFTNIFFYTVAYHAFSASNKLALELGKFKDFENTKFADGSYFDKYTKVAS 540 Query 541 DFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAIAPTGSISYLSSCT 600 DFWT KTE+V+ALF KYQV+IPT+ENWK+L +IQK+GLANSHL+AIAPTGSISYLSSCT Sbjct 541 DFWTCKTEKVQALFDKYQVKIPTQENWKQLVASIQKDGLANSHLMAIAPTGSISYLSSCT 600 Query 601 PSLQPVVSPVEVRKEGRLGRIYVPAYQLNKDSYPFYKDGAYELGPEPIINIAAAAQQHVD 660 PSLQPVVSPVEVRKEG+LGRIYVPAY+L+ D+Y ++KDGAYELG EPIINI AAAQQHVD Sbjct 601 PSLQPVVSPVEVRKEGKLGRIYVPAYKLDNDNYQYFKDGAYELGFEPIINIVAAAQQHVD 660 Query 661 QAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQEVLEDSEDHTIQMQQCEACV 720 QAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQ+VL+DSEDHTI+++ CE C Sbjct 661 QAISLTLFMTDKATTRDLNKAYIYAFKKGCSSIYYVRVRQDVLKDSEDHTIKIKDCEVCS 720 Query 721 I 721 I Sbjct 721 I 721 Lambda K H a alpha 0.319 0.134 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 89297684 Query= gi|13508064|ref|NP_110013.1| ribosomal protein L21 [Mycoplasma pneumoniae M129] Length=100 Score E Sequences producing significant alignments: (Bits) Value gi|12045087|ref|NP_072898.1| ribosomal protein L21 (rpL21) [Mycop... 174 5e-60 >gi|12045087|ref|NP_072898.1| ribosomal protein L21 (rpL21) [Mycoplasma genitalium G-37] Length=100 Score = 174 bits (440), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 82/100 (82%), Positives = 93/100 (93%), Gaps = 0/100 (0%) Query 1 MHAIVVCGSKQYLVHENDTFFVEKLEAPVGKEIQLDKVLMLDEKIGAPYLEKARVVCVVE 60 MHAIVVCG+KQYLVHEN++ FVEKL VG+EIQLDKVLMLDEKIG PYLEKA+VVCV+E Sbjct 1 MHAIVVCGAKQYLVHENESIFVEKLAGKVGQEIQLDKVLMLDEKIGKPYLEKAKVVCVIE 60 Query 61 KHGLQRKVNVIKHISQKHHLKKYGHRQPYTKLKVVRFVHD 100 KHGL+ K+ +IKHISQKHHLK+YGHRQPYTKLKVVRF+HD Sbjct 61 KHGLKSKIKLIKHISQKHHLKRYGHRQPYTKLKVVRFIHD 100 Lambda K H a alpha 0.323 0.139 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6209994 Query= gi|13508065|ref|NP_110014.1| hypothetical protein MPN326 [Mycoplasma pneumoniae M129] Length=100 Score E Sequences producing significant alignments: (Bits) Value gi|12045088|ref|NP_072899.1| hypothetical protein MG233 [Mycoplas... 108 2e-34 >gi|12045088|ref|NP_072899.1| hypothetical protein MG233 [Mycoplasma genitalium G-37] Length=99 Score = 108 bits (271), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 48/96 (50%), Positives = 68/96 (71%), Gaps = 0/96 (0%) Query 1 MIKLTVSHHKLTASGHALFAKKGQDIVCAAVSGIIFGALPWFETNSIAVQEDATVPSLSL 60 MIK+ +S + L A GHALFA+KG+DIVCAA+SGIIFG + WFE + I E+ VPS++L Sbjct 1 MIKINISQNFLVAKGHALFAEKGKDIVCAAISGIIFGGVAWFEPDKIEFTENKLVPSIAL 60 Query 61 ELVQPTAKLITGLSVVIMQLKTLAHSYPQFISFEDQ 96 +L+ PT + SV+ +QLK +A+SYP I ++ Sbjct 61 KLIDPTPNVAVAFSVITVQLKAIANSYPNHIVINEE 96 Lambda K H a alpha 0.320 0.132 0.375 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6209994 Query= gi|13508066|ref|NP_110015.1| ribosomal protein L27 [Mycoplasma pneumoniae M129] Length=104 Score E Sequences producing significant alignments: (Bits) Value gi|12045089|ref|NP_072900.1| ribosomal protein L27 (rpL27) [Mycop... 163 6e-56 >gi|12045089|ref|NP_072900.1| ribosomal protein L27 (rpL27) [Mycoplasma genitalium G-37] Length=104 Score = 163 bits (413), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 75/104 (72%), Positives = 93/104 (89%), Gaps = 0/104 (0%) Query 1 MNNKYFLTKIDLQFFASKKGVGSTKNGRDSHAKRLGAKKADGQMIRTGQIIYRQRGTRVY 60 M+ + +I+LQFFASKKGVGSTKNGRDSH+KRLGAKKADGQMIR GQIIYRQRGT+++ Sbjct 1 MSKNSYCYQINLQFFASKKGVGSTKNGRDSHSKRLGAKKADGQMIRVGQIIYRQRGTKIF 60 Query 61 PGVNVGLGSDDTLFALSDGLVKYQKFGPKQGKTRVSVVKHKLDA 104 G NV +GSD+TLFALSDG+V++QKFG KQ KTRV+++KH+L+A Sbjct 61 AGQNVAMGSDNTLFALSDGIVRFQKFGSKQSKTRVNIIKHQLNA 104 Lambda K H a alpha 0.318 0.136 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6631785 Query= gi|13508067|ref|NP_110016.1| endonuclease IV [Mycoplasma pneumoniae M129] Length=286 Score E Sequences producing significant alignments: (Bits) Value gi|12045090|ref|NP_072901.1| endonuclease IV, putative [Mycoplasm... 404 3e-145 >gi|12045090|ref|NP_072901.1| endonuclease IV, putative [Mycoplasma genitalium G-37] Length=291 Score = 404 bits (1039), Expect = 3e-145, Method: Compositional matrix adjust. Identities = 187/283 (66%), Positives = 227/283 (80%), Gaps = 0/283 (0%) Query 1 MPKLLGSFISFKSPHYLVGSVRDAVSIKAQAFMIFLGAPHTALRVDPNRMQIDEGHTLME 60 MPKLLGSFISFK+P+Y V S +DA++I A A M+FLG PH+A RV N+MQ G+ L++ Sbjct 1 MPKLLGSFISFKAPNYFVQSAQDAIAIDATALMVFLGPPHSAYRVPFNKMQFSLGYELLK 60 Query 61 QHNLSKSGMVVHAPYIINCASKDPVKQTFAIDVLTREVKLCHAVGAKLIVLHPGSAVEQT 120 N++ +G+VVHAPYIINCASKDP+KQ AI VLT E++LC+ GA +VLHPGSAV QT Sbjct 61 TKNINSNGLVVHAPYIINCASKDPLKQQNAISVLTNEIQLCNLAGAHYLVLHPGSAVAQT 120 Query 121 QTQALDHLIKVLNTVIANTKEVIICLETMAGKGNEIGRDLDQLKYVINHIEQQERIGVCL 180 +ALD+L+KVLN VI TK +ICLETMAGKGNEIGRDL +LKYVI+ I ++RIGVCL Sbjct 121 TNEALDNLVKVLNQVINKTKTTVICLETMAGKGNEIGRDLTELKYVIDRIVDKDRIGVCL 180 Query 181 DTCHFHDSGNDFNNTAEIMETIDTKLGFEFLKVIHLNESKNVCGSKKDRHANLGEGMIGF 240 DTCHFHDSG DF++ + TI TKLGFEFLKVIHLNESKN CGSKKDRHAN+ GMIGF Sbjct 181 DTCHFHDSGIDFSDLTGVFNTITTKLGFEFLKVIHLNESKNNCGSKKDRHANINAGMIGF 240 Query 241 DNLMRFIAQPQIKQIPIVLETPSDKHNYPAVYGAEIERIRAWF 283 +NLM+FI+ PQIK +PI+LETPS NYP +Y EI +IR+WF Sbjct 241 ENLMKFISHPQIKDLPIILETPSTSLNYPTIYREEISQIRSWF 283 Lambda K H a alpha 0.322 0.137 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30929661 Query= gi|13508068|ref|NP_110017.1| Ferric uptake regulator (Koonin for MG homologue) [Mycoplasma pneumoniae M129] Length=158 Score E Sequences producing significant alignments: (Bits) Value gi|12045091|ref|NP_072902.1| hypothetical protein MG236 [Mycoplas... 173 2e-58 >gi|12045091|ref|NP_072902.1| hypothetical protein MG236 [Mycoplasma genitalium G-37] Length=140 Score = 173 bits (439), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 79/139 (57%), Positives = 105/139 (76%), Gaps = 0/139 (0%) Query 19 LKDYISVFERNKMRLTQSRLMLLQCLVQHRDWHTLAELKHHLEQNQQRTTLASIYNNLKI 78 L Y+ V E+N +RLT+ R+ LL+CL++H+DWH L+++K HL+ Q +TLASIYNNL+I Sbjct 2 LTSYVKVLEQNNLRLTKPRIALLKCLIEHQDWHNLSQIKTHLDLANQPSTLASIYNNLRI 61 Query 79 FAKLKLINIFVDTNRFETYYCLRHENHKHIYFFDENQRKFLTLPLQDKEALSLIGHKSKH 138 AKLKLINIFVD RFETYYCLRH H HIY FDE +++F TLPL D + +L+ ++ Sbjct 62 LAKLKLINIFVDPERFETYYCLRHAEHNHIYLFDEVKQQFFTLPLTDGQIKTLLETQNHT 121 Query 139 GKIKLNDFYIVASGTLEDD 157 K+KLNDFYIVA G + +D Sbjct 122 SKVKLNDFYIVARGEINND 140 Lambda K H a alpha 0.323 0.136 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13625582 Query= gi|13508069|ref|NP_110018.1| hypothetical protein MPN330 [Mycoplasma pneumoniae M129] Length=294 Score E Sequences producing significant alignments: (Bits) Value gi|12045092|ref|NP_072903.1| hypothetical protein MG237 [Mycoplas... 390 1e-139 >gi|12045092|ref|NP_072903.1| hypothetical protein MG237 [Mycoplasma genitalium G-37] Length=294 Score = 390 bits (1002), Expect = 1e-139, Method: Compositional matrix adjust. Identities = 190/294 (65%), Positives = 232/294 (79%), Gaps = 0/294 (0%) Query 1 MINKPNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKDF 60 MINKPNQF+NHL LK+HF+ Y L+++F Y N EL FF +QF+K++ LVK+K+F Sbjct 1 MINKPNQFLNHLDGLKQHFSDYDSLQKSFKKYLSENQTELNNFFFNQFEKIIVLVKKKEF 60 Query 61 KTAQSRCEEELAAPYLPKPLVSFFQSLLQLVNHDLLEQQNAALASLPAAKIIELVLQDYP 120 KTAQ RCEEELA PY KPLV FFQSLLQL+NHDL+EQ+N LA++ KI+E+VL DYP Sbjct 61 KTAQERCEEELATPYFSKPLVGFFQSLLQLINHDLIEQKNQQLANMSCEKIVEMVLSDYP 120 Query 121 NKLNMIHYLLPKTKAFVKPHLLQRLQFVLTDSELLELKRFSFFQALNQIPGFQGEQVEYF 180 NKLN+IHYLL K +FV P+LLQR+ FVLTD ELLELKRFSFF+ALNQIP F+ +V YF Sbjct 121 NKLNLIHYLLAKEASFVNPNLLQRMTFVLTDLELLELKRFSFFKALNQIPAFKNHKVTYF 180 Query 181 NSKLKQKFTLTLGEFEIAQQPDAKAYFEQLITQIQQLFLKEPVNAEFANEIIDAFLVSYF 240 NSKLKQKF +TLGEF Q K +F+QLI ++ QLFLKEPV+ EFA EIIDA LVS+F Sbjct 181 NSKLKQKFVITLGEFAFPQTDKTKQFFQQLIKKVSQLFLKEPVSCEFAYEIIDALLVSFF 240 Query 241 PLHPPVPLAQLAAKIYEYVSQIVLNEAVNLKDELIKLIVHTLYEQLDRPVGDEN 294 PLHP + + LA KI++YVS+IV+NE V+LKD KLIV TLYEQLDR +G+EN Sbjct 241 PLHPNLEVNHLAKKIHQYVSKIVINEVVDLKDPTTKLIVDTLYEQLDRAIGEEN 294 Lambda K H a alpha 0.321 0.137 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31818976 Query= gi|13508070|ref|NP_110019.1| trigger factor [Mycoplasma pneumoniae M129] Length=444 Score E Sequences producing significant alignments: (Bits) Value gi|12045093|ref|NP_072904.1| trigger factor (tig) [Mycoplasma gen... 593 0.0 >gi|12045093|ref|NP_072904.1| trigger factor (tig) [Mycoplasma genitalium G-37] Length=444 Score = 593 bits (1529), Expect = 0.0, Method: Compositional matrix adjust. Identities = 278/444 (63%), Positives = 358/444 (81%), Gaps = 0/444 (0%) Query 1 MKQYKLVNTTQKEKTLCLEIAIDTKLWKETQQKQTQDLTKNMKIKGFRKGKVPPTLAKDY 60 MK YK++N+ +K+LCLE+ ID W+ TQ+K ++ K++KIKGFR GK+PP LA Sbjct 1 MKLYKVLNSKTTDKSLCLEVEIDPNYWQATQKKLVGEMAKSIKIKGFRPGKIPPNLASQS 60 Query 61 LDRAELLQRSAQAVIDAIFQPLQQEAVIADNENVIEDFPTIDFKTINENDCVILFDFDLV 120 +++AEL+Q+SAQ V+++I++ +QQE ++A N+NVI+D+PTIDFKTI E +CV+LF FDL+ Sbjct 61 INKAELMQKSAQNVMNSIYESVQQEEIVASNDNVIDDYPTIDFKTITEQNCVLLFYFDLI 120 Query 121 PQFEPPDYKHIKDLSPIVPLKDEEFNKELHNIEKNKGKLVDVSDKALANNDIAVIDFVGK 180 P F+ PDYK IKDL+P+ L + EFN E+ + K K +VDVSDK LAN DIA+IDF G Sbjct 121 PNFQLPDYKKIKDLTPLTKLTEAEFNNEIEKLAKTKSTMVDVSDKKLANGDIAIIDFTGI 180 Query 181 VDGKVLESATAKQYELTIGSNSFIDGFESGLIGMKVGDKRQLKLKFPKDYHAEELKGKPV 240 VD K L SA+A+ YELTIGSNSFI GFE+GLI MKV K+ L L FP DYH +EL+ KPV Sbjct 181 VDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKELQSKPV 240 Query 241 EFDIELKAIKQLEITPMDETNFKEYLPAQYQGFNSLKEFKTYFHKLVSAKKLEITLQENS 300 F++ LKAIK+LE TPMDETNFK +LP Q+Q F SLK FK+YFHKL+ KK E LQEN+ Sbjct 241 TFEVVLKAIKKLEFTPMDETNFKSFLPEQFQSFTSLKAFKSYFHKLMENKKQETILQENN 300 Query 301 VKIRQFFLANTTLPYIPDSLIKLESDRLLRAQKDQAEQYKIPFERLLAASKLSLEQLQQR 360 KIRQF L NT LP++P++LIKLE++RLL+ Q+ QAEQYKIPFE+LL+AS ++L +LQ R Sbjct 301 QKIRQFLLTNTKLPFLPEALIKLEANRLLKLQQSQAEQYKIPFEKLLSASNITLTELQDR 360 Query 361 NIKEARDNVTFALVMKRIADVEKIKVDNKKIHSEIESIIDVEYPFVNAELKKQMFHNMEQ 420 NIKEA++NVTFALVMK+IAD+EKIKVDN KI +EIE++I VEYPF + E+KKQ+F NMEQ Sbjct 361 NIKEAKENVTFALVMKKIADIEKIKVDNNKIKAEIENVIAVEYPFASDEMKKQLFFNMEQ 420 Query 421 QKDFVESIILNRLTTTKIIEYSTH 444 QK+FVESII+NRLTTTKI+ YSTH Sbjct 421 QKEFVESIIINRLTTTKIVSYSTH 444 Lambda K H a alpha 0.316 0.134 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 52161487 Query= gi|13508071|ref|NP_110020.1| ATP-dependent protease Lon [Mycoplasma pneumoniae M129] Length=795 Score E Sequences producing significant alignments: (Bits) Value gi|12045094|ref|NP_072905.1| ATP-dependent protease La (lon) [Myc... 1286 0.0 >gi|12045094|ref|NP_072905.1| ATP-dependent protease La (lon) [Mycoplasma genitalium G-37] Length=795 Score = 1286 bits (3328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/795 (78%), Positives = 715/795 (90%), Gaps = 0/795 (0%) Query 1 MPAVKKPQILVVRNQVIFPYNGFELDVGRERSKKLIKALKNLKTKRLVLVTQKNSDQLNP 60 MP KK QILVVR QVIFP+ F LDVGR RS+K+IKALK LKTKRLVLVTQK + + NP Sbjct 1 MPVTKKSQILVVRGQVIFPFVPFSLDVGRPRSRKIIKALKTLKTKRLVLVTQKFTGEQNP 60 Query 61 EFDDIYHCGTLCDIDEIIEVPSEDGKTADYKIKGKGLQRVAITSFSDADLTKYDHHFLNS 120 EF+DIYH GTLC+IDEI++VP D KT DY+IKG+GLQRV I FSDAD+ + + LNS Sbjct 61 EFNDIYHVGTLCEIDEIVDVPGVDSKTVDYRIKGRGLQRVLIEKFSDADINEVSYQLLNS 120 Query 121 TLTENKALDKLLERIFPDKEDFAEILDSLNSFLELQELKKLSKVPKDIKRYDIITFKLAS 180 T+ + +D+ L+RIFP+KE+ ++++ FLEL+ + K VPK +K+ DIITFKLA+ Sbjct 121 TVKDEANVDRFLQRIFPEKEEIEQLMEGAEKFLELENISKTVNVPKGLKQLDIITFKLAN 180 Query 181 LIFKDITLQQAILEENDIEKRLQKIIGSGIEDLGHISEEARAKQRESEFDKIDNRITRKV 240 L+ +++QAILEEN+I RL+KII +GIEDL I + R+K +E+EFDK+D++ITRK+ Sbjct 181 LVPNTESIKQAILEENEIANRLEKIIQAGIEDLQKIQDYGRSKNKETEFDKLDSKITRKI 240 Query 241 NEQLSRQQRDFYLREKLRVIREEIGMTSKKEDEVSNIRKKLEENPYPEHIKKRILSELDH 300 NEQLSRQQRDFYLREKLR+IREEIG++SKKEDEV++IRKKL+ENPYPE IKKRILSEL+H Sbjct 241 NEQLSRQQRDFYLREKLRIIREEIGISSKKEDEVASIRKKLDENPYPEAIKKRILSELEH 300 Query 301 FENSSSSSQESTLTKTYIDTLMNLPWWQESKDNADVKNLIKILNKNHSGLDKVKERVVEY 360 +ENSSSSSQESTLTKTYIDTL+NLPWWQ+SKDN+DVKNLIK L+KNH+GLDKVKER+VEY Sbjct 301 YENSSSSSQESTLTKTYIDTLLNLPWWQKSKDNSDVKNLIKTLDKNHTGLDKVKERIVEY 360 Query 361 LAVQLRTKKLKGPIMCLVGPPGVGKSSLAKSIAEALNKCFVKVSLGGVHDESEIRGHRKT 420 LAVQLRT+K KGPIMCLVGPPGVGKSSLAKSIAEAL+K FVK+SLGGVHDESEIRGHRKT Sbjct 361 LAVQLRTQKNKGPIMCLVGPPGVGKSSLAKSIAEALDKKFVKISLGGVHDESEIRGHRKT 420 Query 421 YLGSMPGRILKGMVRAKVINPLFLLDEIDKMTSSNQGYPSGALLEVLDPELNNKFSDNYV 480 YLGSMPGRILKGM RAKVINPLFLLDEIDKMTSSNQGYPSGALLEVLDPELNNKFSDNYV Sbjct 421 YLGSMPGRILKGMTRAKVINPLFLLDEIDKMTSSNQGYPSGALLEVLDPELNNKFSDNYV 480 Query 481 EEDYDLSKVMFVATANYIEDIPEALLDRMEVIELTSYTEQEKLQITKSHLVKRCLDDAEI 540 EEDYDLSKVMF+ATANYIEDIPEALLDRME+IELTSYTEQEK++I K+HL+KRCL+DA++ Sbjct 481 EEDYDLSKVMFIATANYIEDIPEALLDRMEIIELTSYTEQEKIEIAKNHLIKRCLEDADL 540 Query 541 KTDDLKFTDEGISYIIKFYTREAGVRQLERLIQQIVRKYIVNLQKTGEQQVVVDVDLVKK 600 +++LKFTDE ISYIIKFYTREAGVRQLERLIQQ+VRKYIV +QK G +Q +DV+ VKK Sbjct 541 NSEELKFTDEAISYIIKFYTREAGVRQLERLIQQVVRKYIVAMQKDGIKQETIDVNAVKK 600 Query 601 YLKKEIFDYTVRDEDALPGIVNGMAYTPTGGDLLPIEVTHVAGKGDLILTGNLKQTMRES 660 YLKKEIFD+T+RDE +LPGIVNGMAYTPTGGDLLPIEVTHVAGKG+LILTGNLKQTMRES Sbjct 601 YLKKEIFDHTMRDEVSLPGIVNGMAYTPTGGDLLPIEVTHVAGKGELILTGNLKQTMRES 660 Query 661 ASVALGYVKANAQSFNINPNLFKKVDINIHVPGGGIPKDGPSAGAALVTAIISSLTGKKV 720 A+VALGYVKANA+ FNINP+LFKK+DINIHVPGGGIPKDGPSAGAALVTAIISSLTGKKV Sbjct 661 ANVALGYVKANAERFNINPSLFKKIDINIHVPGGGIPKDGPSAGAALVTAIISSLTGKKV 720 Query 721 DPKIAMTGEITLRGKVMTIGGVKEKTISAYRGGVRTIFMPEKNERYLDEVPKDIVKDLEI 780 DP +AMTGEITLRGKV+ IGGVKEKTISAYRGGV TIFMPEKNERYLDEVPK+IV L I Sbjct 721 DPTVAMTGEITLRGKVLVIGGVKEKTISAYRGGVTTIFMPEKNERYLDEVPKEIVDKLNI 780 Query 781 ILVKEYKDIYNKIFN 795 I VKEY DIYNK+F+ Sbjct 781 IFVKEYSDIYNKLFS 795 Lambda K H a alpha 0.316 0.136 0.375 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 99072909 Query= gi|13508072|ref|NP_110021.1| hypothetical protein MPN333 [Mycoplasma pneumoniae M129] Length=750 ***** No hits found ***** Lambda K H a alpha 0.317 0.132 0.363 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 93318853 Query= gi|13508073|ref|NP_110022.1| ABC transporter ATP-binding protein [Mycoplasma pneumoniae M129] Length=326 Score E Sequences producing significant alignments: (Bits) Value gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 68.2 5e-15 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 67.8 8e-15 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 66.6 3e-14 gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 64.7 2e-13 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 61.2 2e-12 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 61.6 3e-12 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 57.0 6e-11 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 68.2 bits (165), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/231 (23%), Positives = 106/231 (46%), Gaps = 13/231 (6%) Query 13 EKEFGFWRKNRILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFKDEINIDGIS 72 EK ++K +L++++F +M E +G++G GK++ + + ++ + DG++ Sbjct 10 EKVSIIYKKAPLLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVYFDGVA 69 Query 73 NKNAKSKGVISYIPEYAVFPKHLNTHEYLYT------------LGKLSGCSLQTIKEKVD 120 + + K + P ++T +Y+Y L KL + IK+K+ Sbjct 70 SNKKEYKKLKKQCSYLDQIPNLIDT-DYVYEAILRSAKQKLTWLQKLICFEPKWIKDKIL 128 Query 121 YWLARFQIEHLRFKKPNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLDPKTRNEFMDV 180 L + D S+GQK++V + + F PKLL++DEPT LDP T ++ MD+ Sbjct 129 AILKEVNLNDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDL 188 Query 181 CYELNVRNKMAVFVSSHILAELENYCDSLTVIHEGEILFNGKTKNIAKDNF 231 + R K+ + +H + Y + + ++ + T+ + K+ Sbjct 189 ITDFVKREKITLVFVTHDIDLALKYSTRIIALKNHALVLDRLTEKLTKEQL 239 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 67.8 bits (164), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 12/206 (6%) Query 24 ILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFKDEINIDG--ISNKNAK---- 77 ++++++F++ GE+ +G NG+GK+T K L + EI I G + N Sbjct 23 LIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDNVSYLRN 82 Query 78 SKGVISYIPEYAVFPKHLNTHEYLYTLGKLSGC-SLQTIKEKVDYWLARFQIEHLRFKKP 136 + G+I P+ T E G + C S Q IK +D + Q + ++P Sbjct 83 NIGIIFQNPDNQFIGI---TVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQTDGFIKQEP 139 Query 137 NDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLDPKTRNEFMDVCYELNVRNKMAVFVSS 196 ++ S GQK++V + L +P ++I DE TA LDPK + +L + K + + + Sbjct 140 HNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGKCVISI-T 198 Query 197 HILAELENYCDSLTVIHEGEILFNGK 222 H + E+ D + V++EG+++ GK Sbjct 199 HDMEEVTK-ADKVLVMNEGKLIKQGK 223 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 66.6 bits (161), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 107/228 (47%), Gaps = 19/228 (8%) Query 6 IVEVKHLEKEFGFWRKN--RILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFK 63 I+ V HL F N +++ D ++ + + IG +G+GK+T + + + Sbjct 16 ILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQ 75 Query 64 DEINIDGIS-----------NKNAKSKGVISYIPEYAVFPKHLNTHEYLYTLGKLS-GCS 111 +I + I K K+ ++ PEY +F +T E G ++ G S Sbjct 76 GDIWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFK---DTVEKDIMFGPVALGQS 132 Query 112 LQTIKEKVDYWLARFQIEHLRFKK-PNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLD 170 ++K Y+L +++ ++ P + S GQK++V + L +P++LI DEPTA LD Sbjct 133 KYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLD 192 Query 171 PKTRNEFMDVCYELNVRNKMAVFVSSHILAELENYCDSLTVIHEGEIL 218 P+ E M + + + VF+ +H + + D + V+ +G+++ Sbjct 193 PEGEREMMQLIKTAK-QQQRTVFMITHQMENVLEVADVVLVLAKGKLV 239 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 64.7 bits (156), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/241 (26%), Positives = 106/241 (44%), Gaps = 31/241 (13%) Query 8 EVKHLEKEF--GFWRKNRILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFKDE 65 +++H+ K F G + N DV+ + H +G+NGAGK+T L Y+ + Sbjct 7 KMEHISKSFDNGKIKANV---DVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGK 63 Query 66 INI-----------DGISNKNAKSKGVISYIPEYAVFPKHLNTHEYLYTL-----GKLSG 109 I I D + +K I Y V + +E + K+S Sbjct 64 IFIGEKQVNFKSSKDAVKHKIGMVHQHFKLIENYTVLDNIILGNESRFGFLPLINRKVSE 123 Query 110 CSLQTIKEKVDYWLARFQIEHLRFKKPNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANL 169 ++TI EK ++ Q K ++ + GQ+++V +++ LF D +LI DEPTA L Sbjct 124 AKIKTIMEKYGIFVDLKQ-------KVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVL 176 Query 170 DPKTRNEFMDVCYELNVRNKMAVFVSSHILAELENYCDSLTVIHEGEIL--FNGKTKNIA 227 F+ + K V + SH L E++ D+ TV+ G+++ F+ KT + Sbjct 177 SDLEIQNFLKIIANFKKLGKTIVLI-SHKLNEIKQVADTATVLRLGKVVGSFDVKTTPVD 235 Query 228 K 228 K Sbjct 236 K 236 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 61.2 bits (147), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/214 (25%), Positives = 98/214 (46%), Gaps = 30/214 (14%) Query 24 ILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFKDEINIDGISNKNAK------ 77 IL DV+ I GE +G +G+GKTT + LI Y D I++ N Sbjct 104 ILSDVSLQIAYGEIVIILGSSGSGKTTLLN-LIGGY----DSISLGSCIVANCPLEKCTS 158 Query 78 ------SKGVISYIPEYAVFPKHLNTHEYLYTLGKL-----SGCSLQTIKEKVDYWLARF 126 K + Y+ + + L+ ++ + L ++ + EK+D Sbjct 159 EQLLTYRKNNLGYVYQRYNLIELLSAYDNIAISQNLIPKYQRRLDIEELAEKLD------ 212 Query 127 QIEHLRFKKPNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLDPKTRNEFMDVCYELNV 186 I+ + +K P + S GQK++V + +A+ +PKLL+ DEPT LD + +++ +N Sbjct 213 -IKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINK 271 Query 187 RNKMAVFVSSHILAELENYCDSLTVIHEGEILFN 220 K + + +H ++ L + + I +G+I+ N Sbjct 272 TYKQTILMVTHDVS-LTRIANRIIKISDGKIVSN 304 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 61.6 bits (148), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 26/94 (28%), Positives = 56/94 (60%), Gaps = 0/94 (0%) Query 133 FKKPNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLDPKTRNEFMDVCYELNVRNKMAV 192 ++ P++FS GQ++++ + +AL PKL+I DE + LD + + +++ +L ++ + V Sbjct 679 YRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKHNLTV 738 Query 193 FVSSHILAELENYCDSLTVIHEGEILFNGKTKNI 226 +H L+ ++ C+ L ++H G+I+ G I Sbjct 739 LFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEI 772 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 57.0 bits (136), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 52/209 (25%), Positives = 97/209 (46%), Gaps = 22/209 (11%) Query 22 NRILKDVNFAIMPGEFHAFIGQNGAGKTTTIKCLISSYQRFKDEINIDGIS----NKNAK 77 N +LK V+ AI +F +G +G+GKTT + + + + ++G + N Sbjct 249 NAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKL 308 Query 78 SK---GVISYI-PEYAVFPKHLNTHEYLYTLGKLSGCSLQTIKEK---VDYWLARFQIEH 130 +K + YI +Y + P +L E + G +LQ K +D L ++ Sbjct 309 TKFRQKYVGYIFQQYGLLP-NLTVRENIEI-----GANLQPDPSKRISIDALLEAVGMDS 362 Query 131 LRFKKPNDFSSGQKKKVLLIQALFNDPKLLIMDEPTANLDPKTRNEFMDVCYELNVRNKM 190 L+ K PN+ S GQ+++V + +A +P L+ DEPT LD + + + R + Sbjct 363 LQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQT 422 Query 191 AVFVSSH--ILAELENYCDSLTVIHEGEI 217 + + +H ++A N D + + +G+I Sbjct 423 TMIIVTHNNLIA---NLADLVIYVADGKI 448 Lambda K H a alpha 0.320 0.136 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36099075 Query= gi|13508074|ref|NP_110023.1| hypothetical protein MPN335 [Mycoplasma pneumoniae M129] Length=741 ***** No hits found ***** Lambda K H a alpha 0.318 0.133 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 92070904 Query= gi|13508075|ref|NP_110024.1| bidomain: nucleotidyl transferase and conserved hypo-thetical second domain, probably phosphopantetheine adenylyltransferase activity [Mycoplasma pneumoniae M129] Length=344 Score E Sequences producing significant alignments: (Bits) Value gi|12045095|ref|NP_072906.1| hypothetical protein MG240 [Mycoplas... 357 1e-125 >gi|12045095|ref|NP_072906.1| hypothetical protein MG240 [Mycoplasma genitalium G-37] Length=292 Score = 357 bits (916), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 167/292 (57%), Positives = 225/292 (77%), Gaps = 1/292 (0%) Query 54 MLRVALKALPQMAVSNFDIKAQNGFSFNTVQHFKQRFPNAELYFLIGSDKLSELAKWHNI 113 ML++A+K++ VSNFDIK +N FS NTV HFK +P +E+YFLIGSDKL+EL KW +I Sbjct 1 MLKLAIKSVNNALVSNFDIKTKNAFSINTVNHFKSCYPTSEIYFLIGSDKLNELEKWDHI 60 Query 114 EQLQKLCRFVCYERFGYPIDEQLVQQFNVRLLGKCPLDLASSEMFGSHKFRQIPAKVLHY 173 +QL+ LC FVCYER YP ++++ QFNV+ L KCPL++ASS++ + + IP VL+Y Sbjct 61 QQLKDLCTFVCYERKPYPFNKKIANQFNVKYLAKCPLEIASSKLLNQPRKKLIPLAVLNY 120 Query 174 IHQHNIYLKTILQTLLDEPRMQHCLRVGQLAKTLAVANKLDGKTAYTAGAYHDLAKQLPQ 233 I+ +++YL L+ ++D+ R QHCLRVG+LAK LA+ANKLD K A+ AGAYHDLAKQLP Sbjct 121 INTNHLYLIPTLKAMVDDKRFQHCLRVGKLAKQLAIANKLDAKRAFVAGAYHDLAKQLPV 180 Query 234 AQLEKLAKVA-GVNDYPSWKVLHSYAGAYILKHWYGLNNSAVFSAIWNHTVPPQKMSQLD 292 QL +A + +YPSWKVLHSY GAYILK+W+G+ + + +AI NHT+PP+++S+LD Sbjct 181 DQLVNIATSELKITNYPSWKVLHSYVGAYILKNWFGVKDKMIINAIKNHTIPPKQVSKLD 240 Query 293 MIIYLADKLEPMRVHEEWAKGIDITALVKLAKKDLKLAYQITLKYVRSLQKN 344 MI+YLADKLEP R E+W+ GI+I LVKLAK +LK AY ITLKYV++L K+ Sbjct 241 MIVYLADKLEPNRKQEQWSGGIEIDQLVKLAKSNLKQAYLITLKYVQNLVKD 292 Lambda K H a alpha 0.324 0.136 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 38647245 Query= gi|13508076|ref|NP_110025.1| hypothetical protein MPN337 [Mycoplasma pneumoniae M129] Length=621 Score E Sequences producing significant alignments: (Bits) Value gi|12045096|ref|NP_072907.1| hypothetical protein MG241 [Mycoplas... 951 0.0 gi|12045097|ref|NP_072908.1| hypothetical protein MG242 [Mycoplas... 66.6 3e-13 >gi|12045096|ref|NP_072907.1| hypothetical protein MG241 [Mycoplasma genitalium G-37] Length=620 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/621 (74%), Positives = 545/621 (88%), Gaps = 2/621 (0%) Query 1 MVKKELEMYNLYTFQIDLDKKLLFEKADNQQNYSKIRARYFKNSARNQQAVFLNKNLIKN 60 M++KE+E+YNL+TFQIDLDKKLLFEK+++Q+NYSKIR YFK+ +N+ AVFLNKNLIKN Sbjct 1 MIQKEMEIYNLFTFQIDLDKKLLFEKSNDQKNYSKIRTHYFKHKFKNKSAVFLNKNLIKN 60 Query 61 TFNKALLNFSDFLSGSGVESIFKQVIDDQPEVLNYLKQVKKEDSCDGHSEASQLVFNVVI 120 + NK LLNFSDF+SG+G++++F Q+ID+ PEVLNYLKQVKK+ S + ++ SQL FNV I Sbjct 61 SLNKVLLNFSDFVSGAGIDTVFNQIIDEDPEVLNYLKQVKKDLSKENNA-TSQLTFNVTI 119 Query 121 NPKNTLANFFEELTIYLHFNEENNTVVGSFSLKWNIKRADLFSETKNIAINNLIHTFCKN 180 NPKNTLANFFE IYLHFNEENNTV+GSFSL+W+IK+ DLFSETKNIAINNLIHTFCKN Sbjct 120 NPKNTLANFFEGFNIYLHFNEENNTVIGSFSLQWHIKKTDLFSETKNIAINNLIHTFCKN 179 Query 181 NLNEVSFIQIIKCFAKTLINKQGQIVLESCAFKQKWQNIVEQKYPFSTIHKNLKIVNSDF 240 N++E+SF+QII CF+KT INK G+IVL+SCAFKQKWQN+V +KYPFST K+L+ +N DF Sbjct 180 NMHEISFMQIINCFSKTKINKHGEIVLKSCAFKQKWQNVVAEKYPFSTASKDLEKIN-DF 238 Query 241 FDAFFVILLLICHLNNNLLWLCEKTEHFEWKLNSKISNFKEDNTEVYLSKMLLFLKDWYF 300 FDA FV+LLL+CHLN NLLWLCEKT+ FEWK + K + FK +++ YL++MLLFL DWY Sbjct 239 FDALFVMLLLVCHLNKNLLWLCEKTDFFEWKPSQKTALFKANDSGAYLARMLLFLNDWYN 298 Query 301 ENQAVTNEDIEKVDEVEDIGKLVEKYSANQPQKLSSNSTVYVFEPDKKQCFLKNDDFFNT 360 ENQA+T DIE V+EVEDIGKLVEKYS NQPQKLS NSTVYV + +KQ FLKND FFN Sbjct 299 ENQAITTADIENVNEVEDIGKLVEKYSTNQPQKLSLNSTVYVLQTKQKQFFLKNDFFFNN 358 Query 361 NEAKLLFLITMQPNVFGLDDTAIANDLNLREIGDFFKEIDFTDSDVLNDFQQQKETLLVR 420 NEAKL FLITM+PNVFGLDDTAIAN+LNL++I DFFKEIDF D D+LNDF+Q++E LLVR Sbjct 359 NEAKLFFLITMKPNVFGLDDTAIANNLNLKKISDFFKEIDFNDEDILNDFKQEQEKLLVR 418 Query 421 RTFNQLLFMNSNTDVLSIVNNKFKSAIHNIVWTITYSKAIMLKAFDYSKIFEQNRTNDPS 480 RTFNQLLFMN NT++LS+VN+K KS IHNIVWTITYSKAIMLKAFDYSK FE+NRT+DPS Sbjct 419 RTFNQLLFMNKNTEILSVVNDKQKSVIHNIVWTITYSKAIMLKAFDYSKAFEKNRTSDPS 478 Query 481 LLRSNLNSINRLRYLSEYFRTASVKYDQLYTKVKEYMQLDQFLVDMINQVNHEDEIFGKY 540 LLRSNL INRLRYLSEYF+ AS+KYD LYTK K+YMQ+D+F+ DMI +VNHEDEIFGK+ Sbjct 479 LLRSNLTVINRLRYLSEYFQNASLKYDLLYTKAKQYMQIDKFINDMIRKVNHEDEIFGKF 538 Query 541 KERVYLSLGIVTAVVFGIIEFFNCVWTVLTVSQQTAEKSLADPRNTVIIGIGTILVLTLL 600 KER+YLSLGI++AVVFGI+EFFNCVWT+LTVSQ+ +KS+ DPRN + I IGTILVL LL Sbjct 539 KERIYLSLGIISAVVFGIVEFFNCVWTILTVSQEVVDKSVLDPRNIIFISIGTILVLFLL 598 Query 601 ITILTFMTRRLYLFEFNKKHK 621 +TIL FMTRRLYLFE NKKHK Sbjct 599 VTILVFMTRRLYLFEINKKHK 619 >gi|12045097|ref|NP_072908.1| hypothetical protein MG242 [Mycoplasma genitalium G-37] Length=630 Score = 66.6 bits (161), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 117/542 (22%), Positives = 224/542 (41%), Gaps = 81/542 (15%) Query 118 VVINPKNTLANFFEELTIYLHFNEENNTVVGSFSLKW------NIKRADLFSETKNIAIN 171 + +N + L F + I + + GSF+L K+ ++F K+I +N Sbjct 128 IEVNKNSYLKKFVNSIRISFFLDLRAQILSGSFTLNLVNKSIEKQKKTEIF---KDIFVN 184 Query 172 NLIHTFCKNNLNEVSFIQIIKCFAKTLINKQGQIVLESCA--FKQKWQNIVEQKYPFSTI 229 L+ F N L +S + F N ++ L+ K W ++ K+ Sbjct 185 ALVKHFICNQLYPIS----LNSFIFDSENPSNKLALKERIKLLKTNWNSLFFDKFYNCLN 240 Query 230 HKNLKIVNSDFFDAFFVI----LLLICHLNNNLLWLCEKTEHFEWKLNSKISNFKED--- 282 +KN + + + F+ + L+++ + ++ K K+ K + +ED Sbjct 241 NKNKQQLQETSDEMFYAVINTYLIMLISVEELRVYFTSKEPALILKVLDKKNTLREDPDQ 300 Query 283 NTEVYLSKMLLFLKDWYFENQAVTNEDIEKVDEVEDIGKLVEKYSANQPQKLSSNSTVYV 342 N E L +++ F++ Y + T+ + +KV ++E + + + K + L + + Sbjct 301 NPETDLYELIQFIEQNYLKKDKKTSWNKKKVQDLEQLLEEINKIN------LETKNESLA 354 Query 343 FEPDKKQCFLKNDDFFNTN-------EAKLLFLITMQPNVFGLD------------DTAI 383 + + + + ND+F +T E +LL I + P +G+ I Sbjct 355 YPDEITELEIDNDNFVSTKQVFRNQLELQLLHGIVINPEKYGIGMWSSYFADWSEYKNLI 414 Query 384 ANDLNLREIGDFFKEIDFTDSDVLNDFQQQKETLLVRRTFNQLLFMNSNTDVLSIVNNKF 443 LN + DF++ F++ + + + L F++S+++ IV N Sbjct 415 EQMLNPKSGNDFYQ------------FEKDIDESICQINKKYLTFISSDSNTFLIVKNDD 462 Query 444 KSAIHNIVWTITYSKA----IMLKAFD-YSKIFEQNRTNDPSLLRSNLNSINRLRYLSEY 498 I N VW + + I FD Y K F+++ + L +L+ +L + Sbjct 463 VKVISNYVWAQLFFETRRWIINDIEFDLYEKGFDKSHFSRNIALLESLS----FSWLDPF 518 Query 499 FRTASVKYDQLYTKVKEYMQLDQFLVDMINQVNHEDEIFGKYKERVYLSLGIVTAVVFGI 558 + S+K ++ K+ L + +M+N+ HE I K ERV + + A V G Sbjct 519 YGLTSIK--EIMQKIDSKSNLKTSIEEMVNRFKHEQRINKKDNERVLMIFAYIAAFVVGF 576 Query 559 IEFFNCVWTVLTVSQQTAEKSLADPRNTVIIGIGTILVLTLLITILTFMTRRLYLFEFNK 618 I FF+ V+T+LTVS A L P N ++I I ++L L++ + LF F Sbjct 577 INFFSMVFTILTVSDLNA--GLTVP-NIIVISIASVLAFILIVIAV--------LFRFKW 625 Query 619 KH 620 KH Sbjct 626 KH 627 Lambda K H a alpha 0.321 0.136 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 75834025 Query= gi|13508077|ref|NP_110026.1| hypothetical protein MPN338 [Mycoplasma pneumoniae M129] Length=632 Score E Sequences producing significant alignments: (Bits) Value gi|12045097|ref|NP_072908.1| hypothetical protein MG242 [Mycoplas... 1000 0.0 gi|12045096|ref|NP_072907.1| hypothetical protein MG241 [Mycoplas... 72.8 4e-15 >gi|12045097|ref|NP_072908.1| hypothetical protein MG242 [Mycoplasma genitalium G-37] Length=630 Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/632 (77%), Positives = 567/632 (90%), Gaps = 2/632 (0%) Query 1 MEFNKLQLSHCISFYISDVSEVFFESINQHPSRDFVNNILQKIKSTLSEEELEKLNTIEE 60 M+FNKL LSHCISFYIS+VSEVFFESINQHPSRDFVNNILQKIK+TLSEEELEKLN+IEE Sbjct 1 MKFNKLNLSHCISFYISEVSEVFFESINQHPSRDFVNNILQKIKTTLSEEELEKLNSIEE 60 Query 61 VTKDEKILIMLNHVLKKIVSKTGSSSCDLFQIVKHDRFNEPVYIQSVNAFENNLINNEFA 120 VTKDEKI+IMLNHVLKKIVSKTGSS CDLF ++K DRFN PVYIQS+NAFENNLINNEFA Sbjct 61 VTKDEKIVIMLNHVLKKIVSKTGSSKCDLFNVIKQDRFNSPVYIQSINAFENNLINNEFA 120 Query 121 ERRYDYLIEINKHSYLRKYVNAIRISFFLDLRAQILSGSFTLDVINKQLEHQNKEELFQA 180 ERRYDYLIE+NK+SYL+K+VN+IRISFFLDLRAQILSGSFTL+++NK +E Q K E+F+ Sbjct 121 ERRYDYLIEVNKNSYLKKFVNSIRISFFLDLRAQILSGSFTLNLVNKSIEKQKKTEIFKD 180 Query 181 IYLRSLIKHFISNQLYPISLNSFIFGDKNRENKTVENDKLSVLKNNWNQIFFSKYFDFVA 240 I++ +L+KHFI NQLYPISLNSFIF +N NK +++ +LK NWN +FF K+++ Sbjct 181 IFVNALVKHFICNQLYPISLNSFIFDSENPSNKLALKERIKLLKTNWNSLFFDKFYN-CL 239 Query 241 KNKEERVVDNNCDELFYATMNTLLIMLIIIEELRVYFNSKEPALILKLLDNKVSLREDPD 300 NK ++ + DE+FYA +NT LIMLI +EELRVYF SKEPALILK+LD K +LREDPD Sbjct 240 NNKNKQQLQETSDEMFYAVINTYLIMLISVEELRVYFTSKEPALILKVLDKKNTLREDPD 299 Query 301 QNPETDLHELIKFAEKNYLEKEKTSRWHKKRVKSLEELLEEIKQINLETKNESLAYPDEI 360 QNPETDL+ELI+F E+NYL+K+K + W+KK+V+ LE+LLEEI +INLETKNESLAYPDEI Sbjct 300 QNPETDLYELIQFIEQNYLKKDKKTSWNKKKVQDLEQLLEEINKINLETKNESLAYPDEI 359 Query 361 VELELDNVHNFVSTKQVFRHQLDLQTLHGIVINPERYGIGMWSNHFVDWEEFKDLIEQIT 420 ELE+DN NFVSTKQVFR+QL+LQ LHGIVINPE+YGIGMWS++F DW E+K+LIEQ+ Sbjct 360 TELEIDN-DNFVSTKQVFRNQLELQLLHGIVINPEKYGIGMWSSYFADWSEYKNLIEQML 418 Query 421 DAENGSDLYGFEKDLDESICQVNKKYLTFISSDSSSFLIIKNDQTKVISNYVWAQLYFET 480 + ++G+D Y FEKD+DESICQ+NKKYLTFISSDS++FLI+KND KVISNYVWAQL+FET Sbjct 419 NPKSGNDFYQFEKDIDESICQINKKYLTFISSDSNTFLIVKNDDVKVISNYVWAQLFFET 478 Query 481 RRWIINDIEYDLYEKGFDKSHFASNIALLESLNFNWLDPFYGLTSIKEIMQKIDSKSNLK 540 RRWIINDIE+DLYEKGFDKSHF+ NIALLESL+F+WLDPFYGLTSIKEIMQKIDSKSNLK Sbjct 479 RRWIINDIEFDLYEKGFDKSHFSRNIALLESLSFSWLDPFYGLTSIKEIMQKIDSKSNLK 538 Query 541 TSIAEMVAKFKHEQRISKKDNERVLMIFAYVAAAVVGFINFFSMVFTILTVSDLNAGLTP 600 TSI EMV +FKHEQRI+KKDNERVLMIFAY+AA VVGFINFFSMVFTILTVSDLNAGLT Sbjct 539 TSIEEMVNRFKHEQRINKKDNERVLMIFAYIAAFVVGFINFFSMVFTILTVSDLNAGLTV 598 Query 601 ANIVVIAIASLLALFLIVIAVLFRFRWKYIKH 632 NI+VI+IAS+LA LIVIAVLFRF+WK+IKH Sbjct 599 PNIIVISIASVLAFILIVIAVLFRFKWKHIKH 630 >gi|12045096|ref|NP_072907.1| hypothetical protein MG241 [Mycoplasma genitalium G-37] Length=620 Score = 72.8 bits (177), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 12/192 (6%) Query 447 LTFISSDSSSFLIIKNDQTKVISNYVWAQLYFETRRWIINDIEYD-LYEKG--FDKSHFA 503 L F++ ++ ++ + Q VI N VW Y ++ ++ +Y +EK D S Sbjct 424 LLFMNKNTEILSVVNDKQKSVIHNIVWTITY--SKAIMLKAFDYSKAFEKNRTSDPSLLR 481 Query 504 SNIALLESLNFNWLDPFYGLTSIKEIMQKIDSKSNLKTS--IAEMVAKFKHEQRISKKDN 561 SN+ ++ L +L ++ S+K + +K ++ I +M+ K HE I K Sbjct 482 SNLTVINRLR--YLSEYFQNASLKYDLLYTKAKQYMQIDKFINDMIRKVNHEDEIFGKFK 539 Query 562 ERVLMIFAYVAAAVVGFINFFSMVFTILTVSDL---NAGLTPANIVVIAIASLLALFLIV 618 ER+ + ++A V G + FF+ V+TILTVS + L P NI+ I+I ++L LFL+V Sbjct 540 ERIYLSLGIISAVVFGIVEFFNCVWTILTVSQEVVDKSVLDPRNIIFISIGTILVLFLLV 599 Query 619 IAVLFRFRWKYI 630 ++F R Y+ Sbjct 600 TILVFMTRRLYL 611 Lambda K H a alpha 0.321 0.136 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 77364620 Query= gi|13508078|ref|NP_110027.1| hypothetical protein MPN339 [Mycoplasma pneumoniae M129] Length=224 Score E Sequences producing significant alignments: (Bits) Value gi|13277521|ref|NP_077805.1| hypothetical protein MG243m [Mycopla... 200 1e-66 >gi|13277521|ref|NP_077805.1| hypothetical protein MG243m [Mycoplasma genitalium G-37] Length=226 Score = 200 bits (508), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 103/222 (46%), Positives = 149/222 (67%), Gaps = 1/222 (0%) Query 1 MQVKVIDENSNTTAVLNCAKAKTRALAWLCDTVLLAILLAIIYGISSIFIKEQSSVFLIM 60 MQ+KVI+E + T + CAK K RALAWLCD LLAI+L +I+ I+ F + +FL++ Sbjct 1 MQIKVINETNKTVQIFQCAKVKHRALAWLCDVFLLAIVLVVIFLITQAFSDNRFLLFLVL 60 Query 61 TVSQAVLWLTYFVILPGLWKGKTLFRALLGLSLLIFKKRFWNLLVHELFLWVWYSVIFLA 120 + SQ +LW YF+ LP W GKTLFR LL + L F KRF +++HELFLW+ +SV+FL Sbjct 61 SCSQTILWTVYFIFLPFFWDGKTLFRNLLKIKLFAFDKRFLRIMIHELFLWICFSVLFLV 120 Query 121 LAIYFFVNRDDPKILQAFFDNQNSNLSWIFVKILLSVISVLQLVFVVYFCFSSQKQALQD 180 +A YFF+N++ + L F + N I ++ + +IS LQL+F+ YFCFSS+KQALQ+ Sbjct 121 IASYFFINQNSSEALNFFTNLDKPNAIAITIRTITILISFLQLIFIGYFCFSSEKQALQE 180 Query 181 LLSKSFMVQKAIKVKDCKSELKSTNTIKTHSDLPGDIDLEQL 222 +LS +FMVQ+ +K + LK TN ++LPG I L+++ Sbjct 181 ILSNTFMVQEKHTLKSKPTSLK-TNNQPDPANLPGVIALDEV 221 Lambda K H a alpha 0.329 0.140 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22529657 Query= gi|13508079|ref|NP_110028.1| DNA helicase II [Mycoplasma pneumoniae M129] Length=529 Score E Sequences producing significant alignments: (Bits) Value gi|12045098|ref|NP_072909.1| DNA helicase II, putative [Mycoplasm... 315 4e-101 >gi|12045098|ref|NP_072909.1| DNA helicase II, putative [Mycoplasma genitalium G-37] Length=703 Score = 315 bits (806), Expect = 4e-101, Method: Compositional matrix adjust. Identities = 169/390 (43%), Positives = 244/390 (63%), Gaps = 18/390 (5%) Query 4 LNQEQKAAVTCDNGVNVVYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDKAASE 63 +N++QK A++C GVNVVYSGAGTGKTT+I RFAYLVN++ V+P ILA TFT KAA E Sbjct 1 MNEQQKQAISCGKGVNVVYSGAGTGKTTIITNRFAYLVNKEKVDPSRILAITFTKKAAKE 60 Query 64 MRQRIIKLIPQKSLQDLHIYTFHSFANRFLQKHGKSDFAILSDSNRFFSDYEMGDQL--- 120 M+ RI+KLI + +IYTFHSF N+FL + K F I D + F ++ +L Sbjct 61 MQFRILKLIDSSLAEKTNIYTFHSFCNKFLIQTLKKRFIIDDDISYFLKEFLADSKLDIN 120 Query 121 --QTVVEIYKNKVVDLELDNLEYNSAFRDACTDTF---NEDFSTISNGQFRKRAATALRA 175 + +++ +KN D E++ L+ + C + +E++ST+ + + A + Sbjct 121 LAKQIIDNFKNTFADFEINKLDQDERLISLCEHSLLNKDEEYSTL-----KTQLINAFIS 175 Query 176 YQNYLITNNLFDFSDLIIETCHLLKGNSELLQAFTESVHYILVDEFQDTNLAQYELVKLL 235 Y+ I NN DF DL+I+TC+LL +++LL ++E +ILVDEFQDTN QYEL+K+L Sbjct 176 YEKNKILNNKLDFHDLLIKTCNLLSNDNDLLNQWSEQFQHILVDEFQDTNQIQYELIKML 235 Query 236 ATTHPNLFLVGDSNQMIYGWRGAVVEIFELLKNDFQAVK--EFYTTQNYRSIQAVLAVAN 293 T + NLFLVGD+NQMIY WRGAV I LK+DF K EF+ QNYR Q +LAVAN Sbjct 236 VTKNKNLFLVGDNNQMIYRWRGAVNGIITALKHDFNVPKSNEFFINQNYRCDQNILAVAN 295 Query 294 DVLTAIARKERKALV---LLHSSIDSKAVPVHYKANSLKNQDQWIIYQMKQLHLNNGVPY 350 +L I E++ LL S+++S PV+++A S++NQ WI ++K L+ + + Sbjct 296 QILLKIMAYEKQVKTEKNLLFSTLNSDKKPVYFQAESVENQANWIFNKIKALNQTEKINF 355 Query 351 DQMAVLFRKNKHLDAFSQTVLEDGDLPLAK 380 MA+LFRKN+ + + + DG +PL K Sbjct 356 KDMAILFRKNRDITTMVELIEADGTIPLPK 385 Score = 90.5 bits (223), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 51/99 (52%), Positives = 69/99 (70%), Gaps = 3/99 (3%) Query 381 LNLLTIHAAKGLEFEAVFVYGLVERAFPS-LHWDGSDKHKLLEEMKLFYVAITRAKQFLF 439 +NLLT+HAAKGLEFEAVF+YG+ + FP L + +D+ L++E+KLFYVAITRAK+FLF Sbjct 532 INLLTVHAAKGLEFEAVFIYGMNQGDFPLFLSQNQNDEQHLIDELKLFYVAITRAKRFLF 591 Query 440 LVSVSVESFNAYYEPSRFLKLIEK-EHLQTQKAAYFKEQ 477 + +V ++ N +PS FL I K E+L Y EQ Sbjct 592 ITAV-LQINNNSIKPSSFLNYINKSEYLDIATINYVLEQ 629 Lambda K H a alpha 0.320 0.134 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 63391566 Query= gi|13508080|ref|NP_110029.1| DNA helicase II (with Mycoplasma specific C-terminal domain) [Mycoplasma pneumoniae M129] Length=715 Score E Sequences producing significant alignments: (Bits) Value gi|12045098|ref|NP_072909.1| DNA helicase II, putative [Mycoplasm... 745 0.0 >gi|12045098|ref|NP_072909.1| DNA helicase II, putative [Mycoplasma genitalium G-37] Length=703 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/708 (53%), Positives = 505/708 (71%), Gaps = 6/708 (1%) Query 9 LNKEQRAAVTCGKGVNIVYSGAGTGKTTIISQRFAYLFNQKRINPSNILALTYTRKAASE 68 +N++Q+ A++CGKGVN+VYSGAGTGKTTII+ RFAYL N+++++PS ILA+T+T+KAA E Sbjct 1 MNEQQKQAISCGKGVNVVYSGAGTGKTTIITNRFAYLVNKEKVDPSRILAITFTKKAAKE 60 Query 69 MKQRILELLPEKYHKDVNIYTFHSFCSRFLREEGQKNFVIDDDLSNFLKDFLKESELKSQ 128 M+ RIL+L+ + NIYTFHSFC++FL + +K F+IDDD+S FLK+FL +S+L Sbjct 61 MQFRILKLIDSSLAEKTNIYTFHSFCNKFLIQTLKKRFIIDDDISYFLKEFLADSKLDIN 120 Query 129 KVLQIIDGFKNAYFDFDTNSLKDDERLVELCEFHLDPQERNFQLFKETAIAAFVEYEKGK 188 QIID FKN + DF+ N L DERL+ LCE L ++ + K I AF+ YEK K Sbjct 121 LAKQIIDNFKNTFADFEINKLDQDERLISLCEHSLLNKDEEYSTLKTQLINAFISYEKNK 180 Query 189 QQNNKIDFADLLIKTCTLLSKDHKLLRKWSKKFQYILGDEFQDTNQIQYELIKMLASHHQ 248 NNK+DF DLLIKTC LLS D+ LL +WS++FQ+IL DEFQDTNQIQYELIKML + ++ Sbjct 181 ILNNKLDFHDLLIKTCNLLSNDNDLLNQWSEQFQHILVDEFQDTNQIQYELIKMLVTKNK 240 Query 249 NLFLVGDNNQMIYRWRGAVSDIIDSLKSDFKVRPENEFYITQNYRCDQNILTVANSILGT 308 NLFLVGDNNQMIYRWRGAV+ II +LK DF V NEF+I QNYRCDQNIL VAN IL Sbjct 241 NLFLVGDNNQMIYRWRGAVNGIITALKHDFNVPKSNEFFINQNYRCDQNILAVANQILLK 300 Query 309 IYAKENQPDSTKGFLFSAIKSNRLPVYFQASSVEGQHSWIINKIKNLHKNHGIQYKDMAI 368 I A E Q + K LFS + S++ PVYFQA SVE Q +WI NKIK L++ I +KDMAI Sbjct 301 IMAYEKQVKTEKNLLFSTLNSDKKPVYFQAESVENQANWIFNKIKALNQTEKINFKDMAI 360 Query 369 LFRTNRNMDSMTEALEADGSIPLKQNKGFFKQLETFKKVLVALITRSNYDIKLALKSLRV 428 LFR NR++ +M E +EADG+IPL + K +F QL ++VL+A+ TR+N DIK AL++L++ Sbjct 361 LFRKNRDITTMVELIEADGTIPLPKQKSYFNQLVKLQRVLIAISTRTNLDIKRALQALKI 420 Query 429 WPNVLNKSLTVNEQVNLDKILQNLEQAIFLDEHTRGELTEAAKVFTRLIKFVEEQQFEAL 488 W N L + +++ NL L+ E L++ +A F LIK E+QQ L Sbjct 421 WSNDLKELWKQSDKTNLFDFLKWSE----LNQKNHSSKLKATGYFNLLIKLAEDQQINLL 476 Query 489 LAFTFEALNTDQFVCNFIFRTLQKLQTENKNFTITDFINELRFQQDELKQSKDNVINLIT 548 F+ L DQ + N +++ L + Q + F++++FI L + D + ++ + INL+T Sbjct 477 FTELFKKLKVDQTIENLLWKKLTEFQKDKTEFSLSEFITSLALEFDSIIENSSDTINLLT 536 Query 549 VHSAKGLEFEAVFIYGINQDNFPL-KSKNQIIDLQRELDELRLFYVALTRAKKYLFLLSV 607 VH+AKGLEFEAVFIYG+NQ +FPL S+NQ D Q +DEL+LFYVA+TRAK++LF+ +V Sbjct 537 VHAAKGLEFEAVFIYGMNQGDFPLFLSQNQ-NDEQHLIDELKLFYVAITRAKRFLFITAV 595 Query 608 YQMSGEIIYPSKFIRFINKEDRLEIATINHKVHQDDEFFDSSKTEDYQKKYLTENTDFVN 667 Q++ I PS F+ +INK + L+IATIN+ + QDD+FFDS+K DY KK E+ D + Sbjct 596 LQINNNSIKPSSFLNYINKSEYLDIATINYVLEQDDDFFDSTKKTDYTKKLRKESLDIIV 655 Query 668 GDSVSHRTYGKGVVVEVREDAVCVAFKNSKYGQRWIVKNHRDLVKAVY 715 GD V+ R +GKGVVVEVR+ V VAFK+++YG +WI+KNH+ L KA+Y Sbjct 656 GDLVTSRYFGKGVVVEVRDKEVLVAFKDTRYGMKWILKNHKSLTKALY 703 Lambda K H a alpha 0.321 0.136 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 88465718 Query= gi|13508081|ref|NP_110030.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129] Length=543 ***** No hits found ***** Lambda K H a alpha 0.316 0.135 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 65346372 Query= gi|13508082|ref|NP_110031.1| hypothetical protein MPN343 [Mycoplasma pneumoniae M129] Length=330 ***** No hits found ***** Lambda K H a alpha 0.315 0.132 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36665335 Query= gi|13508083|ref|NP_110032.1| hypothetical protein MPN344 [Mycoplasma pneumoniae M129] Length=216 ***** No hits found ***** Lambda K H a alpha 0.311 0.134 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21381649 Query= gi|13508084|ref|NP_110033.1| Type I Restriction Enzyme (fragment) [Mycoplasma pneumoniae M129] Length=206 ***** No hits found ***** Lambda K H a alpha 0.317 0.132 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20157900 Query= gi|13508085|ref|NP_110034.1| Type I Restriction Enzyme hsdR (fragment) [Mycoplasma pneumoniae M129] Length=115 ***** No hits found ***** Lambda K H a alpha 0.317 0.135 0.375 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8078895 Query= gi|13508086|ref|NP_110035.1| Type I Restriction Enzyme (fragment) [Mycoplasma pneumoniae M129] Length=376 ***** No hits found ***** Lambda K H a alpha 0.316 0.135 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 42888624 Query= gi|13508087|ref|NP_110036.1| 5-formyl tetrahydrofolate cyclo-ligase (HI0858) homolog [Mycoplasma pneumoniae M129] Length=164 Score E Sequences producing significant alignments: (Bits) Value gi|12045099|ref|NP_072910.1| hypothetical protein MG245 [Mycoplas... 205 2e-70 >gi|12045099|ref|NP_072910.1| hypothetical protein MG245 [Mycoplasma genitalium G-37] Length=165 Score = 205 bits (521), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 121/161 (75%), Gaps = 0/161 (0%) Query 1 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIKNEVTFVD 60 +DKN+LRK +L KR L+ +EKSHLDQKINQKL+AFL +P IK +ALY PIKNEV F+D Sbjct 2 VDKNSLRKLMLLKRAELNDLEKSHLDQKINQKLMAFLITRPTIKNLALYIPIKNEVAFLD 61 Query 61 FFFEFLKINQIRAVYPKVISDTEIIFIDQETNTFEPNQIDCFLIPLVGFNKDNYRLGFGK 120 F +FLK+N+I + +P ++ + FIDQ N PN IDCF IPL+ FNK N+R+GFGK Sbjct 62 NFLDFLKLNKITSCFPSIVDQFNMKFIDQNNNEINPNDIDCFFIPLLAFNKANHRIGFGK 121 Query 121 GYYDRYLMQLTRQQPKIGIAYSFQKGDFLADPWDVQLDLII 161 GYYDRYL +++Q KIGIAY FQ +F DPWD QLDLII Sbjct 122 GYYDRYLSLTSKKQLKIGIAYDFQYAEFTNDPWDYQLDLII 162 Lambda K H a alpha 0.325 0.143 0.422 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14495300 Query= gi|13508088|ref|NP_110037.1| hypothetical protein MPN349 [Mycoplasma pneumoniae M129] Length=281 Score E Sequences producing significant alignments: (Bits) Value gi|12045100|ref|NP_072911.1| hypothetical protein MG246 [Mycoplas... 423 6e-153 >gi|12045100|ref|NP_072911.1| hypothetical protein MG246 [Mycoplasma genitalium G-37] Length=281 Score = 423 bits (1087), Expect = 6e-153, Method: Compositional matrix adjust. Identities = 198/280 (71%), Positives = 230/280 (82%), Gaps = 0/280 (0%) Query 2 MNSIKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKE 61 M++IK +FLGDVYGKAGR II ++L +K KYQ +L+I NAENTT+GKGLS HY+ LK+ Sbjct 1 MDNIKVLFLGDVYGKAGRKIISDHLPIIKKKYQLNLIIANAENTTNGKGLSWNHYQILKQ 60 Query 62 AGVNYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRIT 121 AG++YITMGNHTWFQK DL +V+N+ D++RPLNL F + LG+GS +F N KIRIT Sbjct 61 AGIDYITMGNHTWFQKQDLELVLNQVDVIRPLNLMQDFNYFQLGKGSYLFSLNGLKIRIT 120 Query 122 NLLGTSVPLPFKTTNPFKVLKELILKRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIFG 181 NLLGTS+ LPF TNPF LK+L+L +DCDLHIVDFHAETTSEKNAFCM FDGYVT I G Sbjct 121 NLLGTSINLPFAITNPFVELKKLVLTKDCDLHIVDFHAETTSEKNAFCMVFDGYVTAILG 180 Query 182 THTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSREHFEVSKCGA 241 THTHVPS DLRITPKGS YITDVGMCGPGFGSVIGANP+QSI+LFC G R+ FEVS CGA Sbjct 181 THTHVPSNDLRITPKGSVYITDVGMCGPGFGSVIGANPKQSIKLFCTGERQFFEVSNCGA 240 Query 242 QLNGVFFEVDVNTKKVIKTEAIRIVEDDPRYLKQDYFNLI 281 QLNGVFFEV T +V+K E IRIV DD +YL DYFNL+ Sbjct 241 QLNGVFFEVCSKTNQVVKIEQIRIVLDDEKYLANDYFNLV 280 Lambda K H a alpha 0.322 0.139 0.412 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30216996 Query= gi|13508089|ref|NP_110038.1| hypothetical protein MPN350 [Mycoplasma pneumoniae M129] Length=239 Score E Sequences producing significant alignments: (Bits) Value gi|12045101|ref|NP_072912.1| hypothetical protein MG247 [Mycoplas... 365 1e-131 >gi|12045101|ref|NP_072912.1| hypothetical protein MG247 [Mycoplasma genitalium G-37] Length=239 Score = 365 bits (938), Expect = 1e-131, Method: Compositional matrix adjust. Identities = 172/239 (72%), Positives = 210/239 (88%), Gaps = 0/239 (0%) Query 1 MNAASAIALLIVFSLVIGYLMGSVMFADVFGKILNKDVRKLGSKNPGATNSIRVFGLKIG 60 MN ASAIA+L++FSL GYL+GS++FAD+F KIL K+VR+ GSKNPGATNS+RVFGLKIG Sbjct 1 MNQASAIAILVIFSLASGYLLGSIIFADIFSKILKKNVREFGSKNPGATNSMRVFGLKIG 60 Query 61 FLVGLCDALKGFLAFVFSFLIFSFWLQQYLNVNQYQKVYYLTYLSCFAATIGHIFPLYFK 120 FLV + DA KGF AF+ ++++F F LQ YL YQ Y+L+YLSCFAATIGHIFPLYFK Sbjct 61 FLVAIFDAFKGFFAFLLTWILFRFGLQGYLTEKVYQSTYFLSYLSCFAATIGHIFPLYFK 120 Query 121 FKGGKAIATTGGSLLAISLWWFVICLVLWLLVTLITKYVSLASLVTFFILAIIILVPWLD 180 FKGGKAIATTGGSLLAISLWWF+ICL++W+++TLITKYVSLASL+TFF+LA+IIL+PWLD Sbjct 121 FKGGKAIATTGGSLLAISLWWFLICLLIWIMITLITKYVSLASLITFFVLAVIILIPWLD 180 Query 181 YLYFFKPNPINAISYQNDWYIILFFVLWYWPLTIAVFWLHRKNIHRLLNKTENKVTQLN 239 YLYFF +P+ +I+YQN+WYIILFF LWYWPLT+ VFWLHR NI R+L+ E+K+TQLN Sbjct 181 YLYFFNSDPLKSITYQNEWYIILFFCLWYWPLTVVVFWLHRANIIRILHGKESKITQLN 239 Lambda K H a alpha 0.333 0.146 0.477 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24455907 Query= gi|13508090|ref|NP_110039.1| methyltransferase [Mycoplasma pneumoniae M129] Length=213 Score E Sequences producing significant alignments: (Bits) Value gi|12045102|ref|NP_072913.1| hypothetical protein MG248 [Mycoplas... 233 4e-80 >gi|12045102|ref|NP_072913.1| hypothetical protein MG248 [Mycoplasma genitalium G-37] Length=218 Score = 233 bits (595), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 116/213 (54%), Positives = 150/213 (70%), Gaps = 1/213 (0%) Query 1 MKRRISTIANLVLQQKPKAFYDIGCDHGYLARELVQQNPSLVGVNSDISANALGAAKGLL 60 MK+RISTIANLV PK YDIGCDH YL L++ N +L VNSDIS NAL + Sbjct 1 MKKRISTIANLVQSFNPKLVYDIGCDHSYLTSYLIKTNQNLTIVNSDISKNALLSNYQKF 60 Query 61 KDHTNMHFITSDGFDLLPNLNLDPAVGVIAGLGGLKIMQILAQHNNFLKHFVLQPQSNII 120 K++ N+HF SDGF+ LP LN++P +GVIAGLGGLKI+ I++Q NF+ FV+QPQSN+I Sbjct 61 KNNNNIHFFVSDGFNNLPELNINPKIGVIAGLGGLKIINIISQKENFINRFVIQPQSNLI 120 Query 121 ELRRFLSANQWTITTETLVEERGFIYLVLAVDKTKAQTQYLTEEQMILGPHLVNFTDKQM 180 ELR FLS N W I ETLV++R FIY +L ++K K + LT+E +ILGP L+NF DK Sbjct 121 ELRSFLSLNSWDIVNETLVQDREFIYPILVIEKLKKPFK-LTKELVILGPKLINFKDKHC 179 Query 181 LVKYYNGLLKNFTARLNPSQFDSQVIHVLNKII 213 L+K+Y LL+ + + PS D ++I LNKII Sbjct 180 LMKHYQCLLRVYQPKQKPSLMDLKIIETLNKII 212 Lambda K H a alpha 0.322 0.138 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20951146 Query= gi|13508091|ref|NP_110040.1| Sigma-70 Factor Family [Mycoplasma pneumoniae M129] Length=499 Score E Sequences producing significant alignments: (Bits) Value gi|12045103|ref|NP_072914.1| RNA polymerase sigma-43 factor (rpoD... 855 0.0 >gi|12045103|ref|NP_072914.1| RNA polymerase sigma-43 factor (rpoD) [Mycoplasma genitalium G-37] Length=497 Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/500 (87%), Positives = 459/500 (92%), Gaps = 4/500 (1%) Query 1 MSSPKKNFKKPQPKTENQKQALNEERIAELKKSRILGKNRPFKKMIYVDTKAQRKQKHEN 60 MS+ KK + K + K L+EE IAELKK RIL KNRP+KKMIYVD K QRK +HEN Sbjct 1 MSTDKKTLGE---KPNSTKPELSEELIAELKKQRILEKNRPYKKMIYVDNKVQRKHRHEN 57 Query 61 VAFLKTLQENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILEGSLKSHTENDDTNKVISL 120 +AFLKTL ENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILEGSLKSH ENDDTN VI+L Sbjct 58 IAFLKTLHENKESDVPKKRRGRKPKHAPLKEKNNLKLFDILEGSLKSHIENDDTNTVINL 117 Query 121 LVEVWEKKNKKKDNN-SLSNKDIVNVLSKFELPDDEIIFVLDELRDKGIELPHDVEEHIH 179 L E WEKK+KKK N +LSNK+I++VL+KFELP+DEII+VLDELRDKGI+L HDVEEHIH Sbjct 118 LTEAWEKKSKKKQKNITLSNKEIISVLAKFELPEDEIIYVLDELRDKGIQLQHDVEEHIH 177 Query 180 EFRANQDLSIIDEDIEELTTKNISNRDKVDDNVRFFLGSLDSSKMLDFESEQRIAKVLNS 239 EFRANQDLSIIDEDIEELT+KNISNRDKVDDNVRFFLGSLD SKMLDFESEQRIAKVLNS Sbjct 178 EFRANQDLSIIDEDIEELTSKNISNRDKVDDNVRFFLGSLDFSKMLDFESEQRIAKVLNS 237 Query 240 TDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNK 299 TDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNK Sbjct 238 TDEESRKYAINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNK 297 Query 300 FSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREPTAEELAEK 359 FSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERAL QELGREPT EELAEK Sbjct 298 FSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALYQELGREPTDEELAEK 357 Query 360 MGGQAEGFTVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVRDTDAQMPDEFTESRSNY 419 MGGQAEGF VKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFV+DTDAQ PDEFTESRSN Sbjct 358 MGGQAEGFNVKKIAEIKRLSLDPVSLDKTVGHDEESQFGDFVKDTDAQTPDEFTESRSNS 417 Query 420 EKIDELLNNCLSEQEELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQIETKAIRKLR 479 EKIDELLNN LSEQEELIVRMRIGMPPYNE KTLDEV QKI IPREKIRQIE KAIRKLR Sbjct 418 EKIDELLNNNLSEQEELIVRMRIGMPPYNEPKTLDEVGQKILIPREKIRQIENKAIRKLR 477 Query 480 QAVRNNHMSLSFMRGNEKKD 499 AVRNN +S+SF+R NEKKD Sbjct 478 HAVRNNPISMSFLRINEKKD 497 Lambda K H a alpha 0.313 0.131 0.356 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 59548025 Query= gi|13508092|ref|NP_110041.1| DNA primase [Mycoplasma pneumoniae M129] Length=620 Score E Sequences producing significant alignments: (Bits) Value gi|12045104|ref|NP_072915.1| DNA primase (dnaE) [Mycoplasma genit... 555 0.0 gi|12044860|ref|NP_072670.1| hypothetical protein MG010 [Mycoplas... 64.7 1e-13 >gi|12045104|ref|NP_072915.1| DNA primase (dnaE) [Mycoplasma genitalium G-37] Length=607 Score = 555 bits (1431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 285/623 (46%), Positives = 411/623 (66%), Gaps = 28/623 (4%) Query 1 MTSPTSLDQLKQQIKIAPIVEHYAIKLKKKGKDFVALCPFHADQNPSMTVSVAKNIFKCF 60 + SLD+L +QIKI I++HY +K++ KG +ALCPFH D+NPSM++S +KNIFKC+ Sbjct 2 VNKSNSLDELLKQIKITEIIQHYGVKIQTKGNSLLALCPFHDDKNPSMSISSSKNIFKCW 61 Query 61 SCQVGGDGIAFIQKIDQVDWKTALNKALSILNLDSQYAVNFYLKEVDPKLKRYWDLHSAL 120 +C G+GIAFIQK DQ+DWKTAL KA+ I + + + L +VDPK KRYW++++AL Sbjct 62 ACNAAGNGIAFIQKHDQLDWKTALKKAIEICGIKLENWNSNLLTKVDPKQKRYWEINNAL 121 Query 121 VDYYQTRLKLEPKEQGLTYLTETRKLSPQVIERFQLGLAFTLEDQYFLPSLLNYPWISPA 180 + YYQTRLK E G+ YL E RKL+ +IE+FQLGLAF ED+Y S+ YP+I+P Sbjct 122 ITYYQTRLKRETNPNGMNYLVEKRKLNKTLIEQFQLGLAFHNEDKYLCESMERYPFINPK 181 Query 181 IEKAELCFATEKFPEALGFFNQQTHYATFKSRIMIPIHDLKGNPVGFSGRALQKTEKIKY 240 I+ +EL ++ + LGFF+ T ATF+++IMIPIHD GNPVGFS R++ K+KY Sbjct 182 IKPSELYLFSKTNQQGLGFFDFNTKKATFQNQIMIPIHDFNGNPVGFSARSVDNINKLKY 241 Query 241 KNSAEHQWFKKSELLFNFHRIDKNTLKLYLVEGYFDVFALTSAGIGDVVGLMGLALSESH 300 KNSA+H++FKK ELLFNFHR++KN +L++VEGYFDVF LT++ + V LMGLAL++ Sbjct 242 KNSADHEFFKKGELLFNFHRLNKNLNQLFIVEGYFDVFTLTNSKF-EAVALMGLALNDVQ 300 Query 301 IIAFQQQLKALETVVLALDNDTAGHDATFKLLQELNAHGIIVEVVDWNQAAYKDWDELFL 360 I A + K L+T+VLALDND +G +A F L+++LN + IVE+V W + YKDWDEL+L Sbjct 301 IKAIKAHFKELQTLVLALDNDASGQNAVFSLIEKLNNNNFIVEIVQW-EHNYKDWDELYL 359 Query 361 AEGSDAVKAKTHRVLNLVEYLVAYFKTKGFDERITVNKVIDIIAQNQKVTADTSFSRFLC 420 +GS+ V + ++ NL+EYLV++FK + D+R+ NK+I + +NQ + D SF FL Sbjct 360 NKGSEQVILQANKRQNLIEYLVSFFKKQQLDQRVITNKIIAFLTKNQTILNDHSFLIFLI 419 Query 421 QKLQQLLQYSDVETLFTQLQQQKLKVKVNKTTTFTQRAPIYESVVGVVDNS--FRNES-- 476 + L +LL+YSD +TL+ + + K E +V DN+ + N S Sbjct 420 KNLVKLLEYSDEKTLYETVLKHK------------------EKLVSKFDNNRFYINTSGH 461 Query 477 ----QPVAITKEFLVENNWKETKERVFHAEIFAYVLLDKQFLVELKQSDLDELFASLQTP 532 Q + T LV+ ++E ++ EIFA+ L+DK+FLVELKQS LDE+F Sbjct 462 AQPPQELQKTTAALVQTAFEEAVNELWKPEIFAFALIDKRFLVELKQSHLDEVFKECNFN 521 Query 533 LFDVALFIDKARLYWAKVQEPDWAVFNSILGEQQAMFPTTFLAQIKEFFLNKSLSYDPED 592 LFDV LFI+KAR+YW++ Q +W F S+L + + L +IK+ FL++ Y D Sbjct 522 LFDVELFIEKARIYWSENQTANWVGFESVLDQNYLLNNKARLLEIKDIFLDELTCYQAND 581 Query 593 YEEDLQFFRQLIVKQKELLKYFK 615 ++ L+ F+ L+ +QK+ LK K Sbjct 582 FQNYLKTFQTLLKQQKQRLKNLK 604 >gi|12044860|ref|NP_072670.1| hypothetical protein MG010 [Mycoplasma genitalium G-37] Length=218 Score = 64.7 bits (156), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/174 (30%), Positives = 83/174 (48%), Gaps = 13/174 (7%) Query 206 YATFKSRIMIPIHDLKGNPVGFSGRALQKTEKIKYKNSAEHQWFKK----SELLFNFHRI 261 Y K + +P++ GN +GF R K+ YK + F K SE + Sbjct 53 YLQNKEWLNLPLYSFDGNLIGFLNR------KVSYKKEFLYTPFNKPPSKSEAFVGLREL 106 Query 262 DKNTLKLYLVEGYFDVFALTSAGIGDVVGLMGLALSESHIIAFQQQLKALETVVLALDND 321 +YLVEG FD A AGI + + L GL +S + +Q+ ++ + + DND Sbjct 107 VIKDNSIYLVEGDFDWLAFRKAGILNSLPLCGLTISNQQVQWLKQK--KIKKIFICFDND 164 Query 322 TAGHDATFKLLQELNAHGIIVEVVDWNQAAYKDWDELFLAEGSDAVKAKTHRVL 375 AG + L + L G I +V++ +AA KDW++LFL S+ T+++L Sbjct 165 LAGKNGAKNLKEYLTKQGFITKVIEI-KAAAKDWNDLFLLNNSNWSAVLTNQLL 217 Lambda K H a alpha 0.321 0.136 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 75694880 Query= gi|13508093|ref|NP_110042.1| glycyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=449 Score E Sequences producing significant alignments: (Bits) Value gi|12045105|ref|NP_072916.1| glycyl-tRNA synthetase [Mycoplasma g... 671 0.0 >gi|12045105|ref|NP_072916.1| glycyl-tRNA synthetase [Mycoplasma genitalium G-37] Length=446 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/444 (71%), Positives = 379/444 (85%), Gaps = 0/444 (0%) Query 1 MAQVYSQEVYVQYLKRYGFVFQSSELYNGLANSWDFGPLGAVLKQQIKTALYNFFIKNKR 60 MA+VY+QEVYVQ+LK++GFVFQSSE+YNGL NSWDFGPLGAVLKQQIK ALYNFFIKNK Sbjct 1 MAKVYNQEVYVQFLKQHGFVFQSSEIYNGLNNSWDFGPLGAVLKQQIKQALYNFFIKNKA 60 Query 61 DVLLIDTPIILNEQIWKASGHLANFTDALVDCKSCKLRFRVDHLDEQIKSATQWNPKQVN 120 DVLL++TPIIL+E +WKASGHLANF D LVDCKSCK RFRVD ++ +IK+ WN +VN Sbjct 61 DVLLVETPIILSELVWKASGHLANFVDTLVDCKSCKYRFRVDQINAEIKAKKDWNSFKVN 120 Query 121 CPNCKANNWSEVRDFNLLFQTEIGVVNSEKRLVYLRPETAQGIFINFKQLLQLKKRPLPF 180 CPNC NWSEVRDFNLLFQTEIGVVN++KRLV+LRPETAQG FINFK +LQ KKR LPF Sbjct 121 CPNCHNQNWSEVRDFNLLFQTEIGVVNNDKRLVFLRPETAQGSFINFKNILQAKKRNLPF 180 Query 181 GVAQFGKSFRNEVTPGNFLFRVREFEQFEMEWFCNPQASLSVFESQQQAIAHFLFKVLQL 240 +AQFGKSFRNE+TPGNFLFR REFEQFE+EWFC P + S+FE Q + FL VL++ Sbjct 181 AIAQFGKSFRNEITPGNFLFRTREFEQFEIEWFCKPDDANSLFEKQLIMVEQFLQTVLKI 240 Query 241 NPALVKQYEYDKNELAHYANKTVDFLFQFPHGLRELWGLADRGTFDLEQHQKYAKKPLDF 300 NP L+K++EYD++ELAHYA KT DFLF FPHGL+ELWGLA+RG FDL+QHQ+++KK + F Sbjct 241 NPELLKKHEYDQSELAHYAKKTTDFLFNFPHGLKELWGLANRGDFDLKQHQEFSKKSMSF 300 Query 301 FDGENNEHFIPAVVEPSVGIERLFYALIVSSYQQEQLEGEMREVLRLPFHLCPEQIVVLP 360 FD E N+HF+P ++EP+VGIERLFYALIVSSY++E + E REVL LPF LCPEQI+VLP Sbjct 301 FDSELNQHFLPFIIEPAVGIERLFYALIVSSYRREIINEEEREVLSLPFDLCPEQIIVLP 360 Query 361 LVNKLKETAQTLFEALSQTHWRIGFESAGSIGKRYRKADAIGTKFAITFDFESLEDQAVT 420 LVNKLK+ A ++FE L++T WR+ FE+ GSIGKRYRKADAIG K+A+TFDFESLED AVT Sbjct 361 LVNKLKKEAFSVFETLAKTRWRVCFETTGSIGKRYRKADAIGIKYAVTFDFESLEDNAVT 420 Query 421 IRERDSLKQVRVPIKELKAWFAQH 444 IR+RD+L Q R+ IKEL WF ++ Sbjct 421 IRDRDTLVQQRIAIKELPQWFMKN 444 Lambda K H a alpha 0.323 0.137 0.416 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 52864472 Query= gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129] Length=242 Score E Sequences producing significant alignments: (Bits) Value gi|12045106|ref|NP_072917.1| rRNA methylase, putative [Mycoplasma... 328 7e-117 >gi|12045106|ref|NP_072917.1| rRNA methylase, putative [Mycoplasma genitalium G-37] Length=242 Score = 328 bits (842), Expect = 7e-117, Method: Compositional matrix adjust. Identities = 151/242 (62%), Positives = 202/242 (83%), Gaps = 0/242 (0%) Query 1 MKRMQETSFLFGSKAFLEALDNQLQIKKVNLSDKHQKLLGLIKKRGLRYEMHSSQWFHQQ 60 MK+ ++ S LFG KAF EA++NQ+ IK VN+S +H+KL+ LI+ + + +++HS+ WF+ Q Sbjct 1 MKKPRQQSCLFGVKAFEEAINNQVHIKLVNISIRHKKLIPLIEAKKINFQIHSTNWFNNQ 60 Query 61 FRHINHQEFVCVINPNQMLKTIEQLIQITDSKSTSTLVMLHEIQDPHNFGAILRTCMAAE 120 +R INHQE V V++ NQ+L ++QL+++ ++K STLVML EIQDP+NFGAILRTC+A+E Sbjct 61 YRDINHQELVAVLDTNQLLIPLDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASE 120 Query 121 VDGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERL 180 VDGIIFKK+NQ PIN+TV++TSMG+VFYQNLVQV NLSY IT L++ GFWTV +TLD Sbjct 121 VDGIIFKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVSTLDPIW 180 Query 181 KPKDYRQVDFDKRILLVGNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILFGW 240 KP DYR+VDF K+IL+VGNED+G+N L+ KNAD ++KIPMN K+NSLNVSVA+GIILF W Sbjct 181 KPIDYRKVDFAKKILIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAW 240 Query 241 KS 242 K+ Sbjct 241 KN 242 Lambda K H a alpha 0.322 0.135 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24884958 Query= gi|13508095|ref|NP_110044.1| cysteinyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=437 Score E Sequences producing significant alignments: (Bits) Value gi|12045107|ref|NP_072918.1| cysteinyl-tRNA synthetase (cysS) [My... 653 0.0 >gi|12045107|ref|NP_072918.1| cysteinyl-tRNA synthetase (cysS) [Mycoplasma genitalium G-37] Length=428 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/428 (72%), Positives = 367/428 (86%), Gaps = 1/428 (0%) Query 10 LIDTVSNQSVVLEQKQINIYLCGPTVYNDLHLGNTRPLIVFDVLQRVLQAAQYKVQFVQN 69 ++D+VS + L QK INIYLCGPTVYNDLHLGNTRPLIVFDVL RVL+ A+Y V FVQN Sbjct 2 IVDSVSQKPTTLVQKTINIYLCGPTVYNDLHLGNTRPLIVFDVLNRVLKKAKYTVNFVQN 61 Query 70 ITDIDDKIIKIAQQQEISEAQLCKQQITAYKSLLKKLNILPIKHLQVTDKIDKMPGYIAR 129 ITDIDDKIIKIAQQQE+SE+ + KQQITAYKSLLKKLNILPIKH+Q+T+KIDK+P YI + Sbjct 62 ITDIDDKIIKIAQQQEVSESVVTKQQITAYKSLLKKLNILPIKHIQITEKIDKIPDYIDQ 121 Query 130 LVKKGFAYVSPLGNTYFSVSQLPQYGILANRVVETIEDEATDKRNKLDFVLWKQTTAGVK 189 LV + AYVS N YF+V+ L QYG LANR+V +E+ TDK+NKLDFVLWK TTAG+K Sbjct 122 LVNQNHAYVSTQNNVYFAVNSLKQYGYLANRMVH-LEETDTDKKNKLDFVLWKITTAGIK 180 Query 190 WNSPWGWGRPGWHVECAFLIDYSFKDQLTIHGGGVDLKFPHHENENAMHMALYDKPLTQH 249 WNS WG GRPGWHVECAFLIDY FK++LTIHGGGVDLKFPHHENENA+HMALY++P+T+H Sbjct 181 WNSKWGLGRPGWHVECAFLIDYCFKNELTIHGGGVDLKFPHHENENALHMALYNQPITKH 240 Query 250 WMHIGHLMFENQKMSKSLQNFLLAVDFLTIHDFRILRWLFYQKHYYHPLDLSQSLIEQAC 309 WMHIGHLM ENQKMSKSLQNFLLAVDFL HDFR+LRW+FYQKHY HP+DL+QSLIE+A Sbjct 241 WMHIGHLMIENQKMSKSLQNFLLAVDFLNFHDFRVLRWIFYQKHYLHPIDLNQSLIEKAN 300 Query 310 SDIKRIQKAVNVCRTWFVYSEQSAIPAPKQFEPVFKALLNNLNFANAITHIWKLVKQINH 369 +DI+RI K +NV RTW VYSEQS + +PKQ++PVF ALL+NLNFANA+ IWKL+K+IN Sbjct 301 NDIQRIAKTLNVARTWLVYSEQSELISPKQYDPVFSALLDNLNFANAVAAIWKLIKKINT 360 Query 370 DVSKQNLSGLKEHLSHLEWALNILGIGFKSIHTKLNVQLIKKWASLRKNGQLDKADEVRQ 429 + ++ S L+E LS LEW++++LGI FKSIHTKLNV+LIK+W+ L K +DKAD++R+ Sbjct 361 SIKTKDFSVLREQLSFLEWSIDLLGISFKSIHTKLNVRLIKEWSILHKQKAMDKADQIRK 420 Query 430 KLIKKGLL 437 KLIKK LL Sbjct 421 KLIKKMLL 428 Lambda K H a alpha 0.322 0.137 0.419 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 51177308 Query= gi|13508096|ref|NP_110045.1| DNA ligase [Mycoplasma pneumoniae M129] Length=658 Score E Sequences producing significant alignments: (Bits) Value gi|12045108|ref|NP_072919.1| DNA ligase [Mycoplasma genitalium G-37] 889 0.0 >gi|12045108|ref|NP_072919.1| DNA ligase [Mycoplasma genitalium G-37] Length=659 Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/653 (66%), Positives = 513/653 (79%), Gaps = 0/653 (0%) Query 6 QIRAIVEQLKRYDYHYYVLDDPLVSDFEYDQLYKQLQALEQAHPELIQPDSPTQRVGGIV 65 +I+ +V +K YDYHYYVL +PL+ DFEYD LYK LQ LE+ HP+LIQ DSPTQRVGG Sbjct 7 KIQQLVNLIKNYDYHYYVLSEPLIDDFEYDMLYKSLQQLEKDHPDLIQIDSPTQRVGGEA 66 Query 66 VEAFNKFPHQNPMLSLDNAFDTATIASFIANINNLTGVQNRFVVEPKIDGVSISLTYENG 125 V+ F K H +PMLSL+NAF T IA+FI NIN T +N FVVEPKIDGVSISLTY+NG Sbjct 67 VKGFKKLNHNSPMLSLENAFSTKEIANFIDNINFQTNSKNEFVVEPKIDGVSISLTYKNG 126 Query 126 LLTRALTRGDGLVGEDVLSNVKTIKSIPLTIPFHKQVEIRGEIFVDKKTFAQINENLAKP 185 +L ALTRGDG VGEDVL+NVKTIKSIPLTIPF K +EIRGEIFVDKKTF IN L KP Sbjct 127 VLVHALTRGDGSVGEDVLNNVKTIKSIPLTIPFTKTIEIRGEIFVDKKTFLAINNQLEKP 186 Query 186 FANARNLAAGTLRNLNSEVSAKRKLKAFFYFVPNALTLGCRSQSAVLAQLKQWNFPVSKA 245 FANARNLAAGT+RNLNSE++A+RKL+A FY++PN L +Q+ VL QLKQW FPVS Sbjct 187 FANARNLAAGTIRNLNSEITAQRKLRALFYYIPNGLEESITTQTMVLEQLKQWKFPVSDT 246 Query 246 VASFDRPEALIEYLEQFDQTRDQLNFQVDGLVVKLDNFHFYDQLGFTSKFPRWALAYKFK 305 + F LI YLE FD+ R+QL F +DGLV+KL++ FY QLG TSK PRWA+A+KF Sbjct 247 IRVFQNKFQLINYLEAFDKKREQLTFNLDGLVIKLNSLLFYQQLGATSKSPRWAIAFKFS 306 Query 306 PKFVQTKLRGVLVTVGRTGKINYTAQLDPVNLEGTVVSAATLHNFDYIKEKDIRLNDTVI 365 PKFVQTKL VL+T+GRTG++NYTA+L+ VNL+GT V+AATLHNFDYIK KDIR+NDTV+ Sbjct 307 PKFVQTKLTAVLITIGRTGRVNYTAKLESVNLDGTKVTAATLHNFDYIKTKDIRINDTVV 366 Query 366 IYKAGEIIPKVLEVCLPLRTAANQPIPEQTHCPACQAPLVQYKDEVDQYCTNERCDQRNL 425 IYKAGEIIPKVL+V L R I EQ +CP+C + LV+ DEVDQYCTNE C +RN+ Sbjct 367 IYKAGEIIPKVLKVNLEKRKNDTIIIQEQKYCPSCNSKLVKIVDEVDQYCTNETCKERNI 426 Query 426 EAINYFVSKTAMDIQGLSIQTISKLYENNLVRSVVDLYHLKEHKAAVLALELKIGEVLFN 485 + INYFVSKTAMDI GL+I TI+KLYE+NLVRS+VDLY LK+ K VL L+LKIG+ LFN Sbjct 427 QLINYFVSKTAMDINGLNINTITKLYEHNLVRSIVDLYDLKDKKNQVLKLDLKIGDKLFN 486 Query 486 KLISSIEQSKTKGMARLLTGLGIKHVGQVLAKSLTKHFENIDALQSASMETLLELPDVGP 545 KL+ +IE SK KGMARLLTGLGIKHVG VLAK+L HF+NI ALQ AS+E L+ L DVG Sbjct 487 KLVDNIENSKQKGMARLLTGLGIKHVGNVLAKNLANHFKNIKALQHASLENLISLNDVGI 546 Query 546 TVAESLFNWFHNDNNLQLLAALKAVGVQMDALKSNTNFDTASIYFQKSFVITGSFPISRD 605 TVAESL+NWFH+ N+LQL+ L+ V+ D L NF+T SIYFQK F+ITGSF ISRD Sbjct 547 TVAESLYNWFHDPNHLQLIEQLELRQVKTDQLPLKINFETNSIYFQKRFLITGSFNISRD 606 Query 606 TIKNLLVNKYDCRFTNNVTSKVDFVLAGIKATPRKLEQAKALNIPIINEPIWT 658 IK+LL K+DC+F + V VDFV+AG K T RK+ AK LNIPIINE IWT Sbjct 607 QIKDLLSAKFDCQFASEVKPTVDFVIAGNKPTLRKINHAKELNIPIINEAIWT 659 Lambda K H a alpha 0.320 0.135 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 80982390 Query= gi|13508097|ref|NP_110046.1| hypothetical protein MPN358 [Mycoplasma pneumoniae M129] Length=534 Score E Sequences producing significant alignments: (Bits) Value gi|12045109|ref|NP_072920.1| hypothetical protein MG255 [Mycoplas... 429 6e-150 gi|12045110|ref|NP_072921.1| hypothetical protein MG255.1 [Mycopl... 95.1 3e-25 >gi|12045109|ref|NP_072920.1| hypothetical protein MG255 [Mycoplasma genitalium G-37] Length=365 Score = 429 bits (1103), Expect = 6e-150, Method: Compositional matrix adjust. Identities = 230/365 (63%), Positives = 291/365 (80%), Gaps = 2/365 (1%) Query 1 METQNQIETLRYIFNQLNNQDKPQIIWFSGEGEDEKINFLIRLDNYFQPTFVQDLT-INF 59 ME++NQI L YIFNQ+N ++P+I+WFSGEGEDEKINFLIRL+++F+P FV++ +F Sbjct 1 MESENQIAILDYIFNQVNQPNQPKIVWFSGEGEDEKINFLIRLNDFFKPKFVENTNDSSF 60 Query 60 LPAFVKRNKKNPPNTLAKGNFVNIANKLLAVLARSLSWKQLNKPQQKWLLWLL-VPFLLL 118 L +F + L + NF NIANKLLAVL SL WKQLNKP W L +L + L L Sbjct 61 LLSFRNHVETKNSTPLTQANFANIANKLLAVLFGSLQWKQLNKPTGNWFLVILFLALLWL 120 Query 119 RQLWLKKKVSKIFQFVNERGILSFIKEQWPILTTLVTVGTTLGTPIFSITISQQKAILEN 178 RQ WLK +++KI +FVN++GILSFIK+QWPILTTLVTVGTTLGTP+FS+TI+QQ I +N Sbjct 121 RQCWLKLQLTKISKFVNQKGILSFIKQQWPILTTLVTVGTTLGTPVFSLTIAQQDGIKQN 180 Query 179 AGHGAFVFLVIFSVFAIALGLVSSLIFLVSSLFSIRQKKSLQQLHQILSRLINKYFCFAN 238 AG+ F+FL+IFSVF+I+LGLVSSLIFLVSSLFSIRQKK+L L ++LS+ I+KYF Sbjct 181 AGNDVFIFLIIFSVFSISLGLVSSLIFLVSSLFSIRQKKTLDALDKVLSKFIDKYFFLDE 240 Query 239 SEQNQTGRYQLKNTGVCFFYGFDFEEKEYITQAMNLLLLLKQTNCFVLVGCKESNMLLIK 298 E + +YQ KN GVCFFYGFDF++ E++ Q+MNL+LLLKQTNCF+LVGCKES M LIK Sbjct 241 KEIKKQLKYQFKNNGVCFFYGFDFDQAEFLEQSMNLMLLLKQTNCFILVGCKESEMTLIK 300 Query 299 NKVEPDINLKQSSLYLDLKSQISPLAQISKYNLLFEELALDADMFYLEDFFALLKTPRQI 358 NK+EP+INLKQ+S YLDL ++IS + QISK+NLLF +L L +++FYLEDFF L T +QI Sbjct 301 NKIEPNINLKQNSFYLDLSNEISQVEQISKFNLLFRQLRLSSELFYLEDFFDYLTTAKQI 360 Query 359 VNFLF 363 VNFLF Sbjct 361 VNFLF 365 >gi|12045110|ref|NP_072921.1| hypothetical protein MG255.1 [Mycoplasma genitalium G-37] Length=119 Score = 95.1 bits (235), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 46/101 (46%), Positives = 68/101 (67%), Gaps = 0/101 (0%) Query 434 KDNSLLFKPELFNTHAYIPETYTQVTLENIDSDKRAQLVPLNWFSQQKFSDFIEEKINFW 493 ++NSL+ KPELF+ Y + Y + ++ +K L+PL W +QKF FIE + + Sbjct 5 QENSLVLKPELFSLQKYTKDVYGLNVINQLNLNKHPMLIPLTWDKKQKFISFIESCVQKY 64 Query 494 QTQQAENKVFYLTLGERIFFLVLVNKKFKQIKLEAALKYLN 534 + +N+VF LT+G+R+FFL+L+NK+FKQIKLE ALKYL Sbjct 65 SQVKKDNQVFSLTVGKRVFFLLLINKQFKQIKLETALKYLG 105 Lambda K H a alpha 0.324 0.138 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 64089711 Query= gi|13508098|ref|NP_110047.1| hypothetical protein MPN359 [Mycoplasma pneumoniae M129] Length=258 Score E Sequences producing significant alignments: (Bits) Value gi|12045111|ref|NP_072922.1| hypothetical protein MG256 [Mycoplas... 270 4e-93 >gi|12045111|ref|NP_072922.1| hypothetical protein MG256 [Mycoplasma genitalium G-37] Length=256 Score = 270 bits (689), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 137/259 (53%), Positives = 187/259 (72%), Gaps = 4/259 (2%) Query 1 MNYSYSFKEYIERFAKKVNSIDSEYFEFSSYIERMRTVFGLLIALICFSNVLCFLFIATW 60 M+++ +FKE + AKKVNS+DSEY+EFSS+IER+RT FGLLIAL SN++ F+ W Sbjct 1 MHFNSNFKECFNKIAKKVNSLDSEYYEFSSFIERIRTTFGLLIALTVLSNLIIISFVLIW 60 Query 61 FSTKGFGQHYRALIFTLFIPFVTSLLANIIFINLNRAFREYFKISSKSRSFLVICAFSSL 120 F T GFGQ R L FTLFIPF SLL I I LN +FR +F+I+ K+ FL C FSSL Sbjct 61 FFTDGFGQ-LRLLFFTLFIPFFISLLVAIFLIFLNNSFRNFFQINEKNWLFLWTCVFSSL 119 Query 121 PIVNIWLMLWWVAMIKRFTSNYAFAIFDKYNGLTSGVFIFDFADNVNFEGKLVSFDNTKD 180 PI N+WL++ IK F S+Y F I +KYN LTSG+F+FDFAD V+FE L ++ NT D Sbjct 120 PIFNLWLIVRLNKTIKNFASDYGFKIVNKYNSLTSGIFVFDFADYVSFEANLTNWKNTND 179 Query 181 TNRDFVHFYSEAKLKRDKITLQTNPIPH-ERMYVNRMYYQQKLSMGANQNSPSTAFANLK 239 NR+FV+F+ + ++K + P+ + +R+YVNR+YYQ KLS+G+NQ +P TAF NL+ Sbjct 180 KNRNFVNFFET--ISKEKTGVVQKPVLNFQRLYVNRLYYQSKLSVGSNQQTPQTAFDNLR 237 Query 240 RYVEHKQQKIIKIKQFILT 258 YVE+KQ++ +++KQ+ILT Sbjct 238 NYVENKQRETVRVKQYILT 256 Lambda K H a alpha 0.329 0.140 0.424 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26938737 Query= gi|13508099|ref|NP_110048.1| ribosomal protein L31 [Mycoplasma pneumoniae M129] Length=97 Score E Sequences producing significant alignments: (Bits) Value gi|12045112|ref|NP_072923.1| ribosomal protein L31 (rpL31) [Mycop... 151 3e-51 >gi|12045112|ref|NP_072923.1| ribosomal protein L31 (rpL31) [Mycoplasma genitalium G-37] Length=97 Score = 151 bits (381), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 71/97 (73%), Positives = 82/97 (85%), Gaps = 0/97 (0%) Query 1 MKKDFHFPSQSVSFKCASCSNSFTIESTLKQKEITIDICGKCHPFYIGELTKQTVHGRAE 60 MKK HF SQ V F CASC+++FTI+ST KQK++ IDICGKCHPFYIG+LTKQTVHGRAE Sbjct 1 MKKAIHFQSQPVVFNCASCNSNFTIDSTAKQKDLAIDICGKCHPFYIGQLTKQTVHGRAE 60 Query 61 KLSGKFNAGKAFLENKTPKKAKGKTEEYTKHRSLNEL 97 KLS KFNAGKAFLENKT K + K E+ T+HRS+NEL Sbjct 61 KLSQKFNAGKAFLENKTKKSNQAKVEKQTRHRSINEL 97 Lambda K H a alpha 0.315 0.129 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5766423 Query= gi|13508100|ref|NP_110049.1| peptide chain release factor 1 [Mycoplasma pneumoniae M129] Length=359 Score E Sequences producing significant alignments: (Bits) Value gi|12045113|ref|NP_072924.1| peptide chain release factor 1 (prfA... 625 0.0 >gi|12045113|ref|NP_072924.1| peptide chain release factor 1 (prfA) [Mycoplasma genitalium G-37] Length=359 Score = 625 bits (1612), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/359 (81%), Positives = 332/359 (92%), Gaps = 0/359 (0%) Query 1 MEFDKQFFSSVEKIVELAEQLEKDLNKPDLTFEQIKAINKELKHKQPLVVKFKEFKRLID 60 M+FDKQ F +VEKIVEL EQLEKDLNKP+L+FEQIK INKELKHKQPL+VKFKE ++L++ Sbjct 1 MDFDKQLFFNVEKIVELTEQLEKDLNKPNLSFEQIKVINKELKHKQPLIVKFKELQKLVE 60 Query 61 QALEAEAILENNELKELHDEAKKELERVRSVVPEYEEALKLLLLPIDENNQKNVIVELRP 120 A EAE IL N+ LKELH+EAKKELE++++ +P EE +K LLLP+DENNQKNVIVE+RP Sbjct 61 NANEAEQILNNSSLKELHEEAKKELEKIKASLPSLEEEIKFLLLPVDENNQKNVIVEIRP 120 Query 121 AAGGDESCIFLADLFNMYRNFCSNKGWKLQINEMIPSSVGLNFVSFEVNGVDVFAKLKFE 180 AAGGDESCIFL+DLFNMY+N+C++K W +++NE+IP+SVG+NFVSF VNG DVFAKLKFE Sbjct 121 AAGGDESCIFLSDLFNMYKNYCTSKNWTVELNEIIPASVGINFVSFAVNGTDVFAKLKFE 180 Query 181 SGVHRVQRVPATESKGRVHTSTVTVAVLPQLEAVEVHINPADLRVDTYRASGAGGQHVNR 240 SGVHRVQRVP TE+KGRVHTSTVTVAVLPQLE VE+ INP+DLR+DTYRASGAGGQHVNR Sbjct 181 SGVHRVQRVPLTEAKGRVHTSTVTVAVLPQLEEVEITINPSDLRIDTYRASGAGGQHVNR 240 Query 241 TESAVRITHLPTGIVVSCQEGKSQFTNRDTAMKMLRAKLWEKAQNEQLSTQAGLRKSQVG 300 TESAVRITHLPTGIVV+CQEGKSQF+NRD AMKMLRAKLWE AQN+QLSTQA LRKSQVG Sbjct 241 TESAVRITHLPTGIVVACQEGKSQFSNRDKAMKMLRAKLWENAQNKQLSTQADLRKSQVG 300 Query 301 SGDRAEKIRTYNYPQNRVTDHRIKLTVNKLNTIILGDLDEIIEALQADEKKQQLENFFS 359 SG+RAEKIRTYNYPQNR+TDHRIKLT+NKLNT+ILGDLDEIIEALQADEKKQQLE F S Sbjct 301 SGERAEKIRTYNYPQNRITDHRIKLTINKLNTVILGDLDEIIEALQADEKKQQLEKFIS 359 Lambda K H a alpha 0.315 0.132 0.364 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 40770720 Query= gi|13508101|ref|NP_110050.1| hemk family, similar to methyltransferase (S-adenosyl-methionine dependent) [Mycoplasma pneumoniae M129] Length=453 Score E Sequences producing significant alignments: (Bits) Value gi|12045114|ref|NP_072925.1| hypothetical protein MG259 [Mycoplas... 512 0.0 >gi|12045114|ref|NP_072925.1| hypothetical protein MG259 [Mycoplasma genitalium G-37] Length=456 Score = 512 bits (1318), Expect = 0.0, Method: Compositional matrix adjust. Identities = 246/454 (54%), Positives = 329/454 (72%), Gaps = 3/454 (1%) Query 1 MNLYELFLNQKLLYGTDPHFNGVFLTLLEKFGLHFKDLTALWKHAKTITDFDEQGIVNAL 60 M LYE FLNQKL+Y + PHFNGVFLT+LE +G FK + LWK IT I L Sbjct 1 MTLYEFFLNQKLVYQSSPHFNGVFLTILEHYGFQFKTIDKLWKSKLLITSELTDKIKQQL 60 Query 61 KAYFVDQLPLPYITGSVKLGSLTFKTQPGVFIPRADSLALLKVVKAQNLKTAVDLCCGSG 120 K YF++++PLPY+ G+++L LTFKT+ GVFIPR DSLAL+ V + +KTA+DLCCGSG Sbjct 61 KCYFIEKIPLPYLLGTIQLRKLTFKTKKGVFIPRIDSLALIASVNLKKIKTALDLCCGSG 120 Query 121 TLAIALKKRFPHLNVYGSDLNPQALQLAAQNARLNMVEVQWIEADFLAALAQVNTPIDLI 180 TLAIALKK+ L+VYGSD++ QAL+LA QNA +N V + WIEAD+ ++ TPIDLI Sbjct 121 TLAIALKKKCDTLDVYGSDIDIQALKLAQQNALINNVSINWIEADWFDCFNKIKTPIDLI 180 Query 181 ITNPPYLNESQLDQTLNHEPRNSLV-ADGNGILFYQKLYNFLLGNRQVKQVILECSPTQK 239 +TNPPYL ++QL++TLN+EP++SLV + N Y++L+N LL R +KQ+I ECS QK Sbjct 181 VTNPPYLKKTQLNKTLNYEPKHSLVFQNKNSYFAYKQLFNLLLTKRSIKQLIFECSLFQK 240 Query 240 KEFLALFSIFKTSEIYTSHKQFIGLSIDNTKLPVLKIAQTKQIKALLDKGMTAIIPTDTQ 299 + L LFSIFK+ I+ KQFIG+ +DN KLPV+ I TK IK LL G+ I+ TDTQ Sbjct 241 ERLLNLFSIFKSRPIFNFQKQFIGMKVDNQKLPVVDIKNTKTIKQLLKMGLAGIVNTDTQ 300 Query 300 IGLMSYCQQDLDHIKQRDPNKHYVQFLAPSQINQLPKQLQKLAKLFWPGAYTFIVDGQSY 359 +GL+SY + LD IKQR NKHYV ++ +LPK+LQ++A FWPG+YTFI + +SY Sbjct 301 MGLISYSESTLDKIKQRALNKHYVSMFGLEELKKLPKKLQQIASYFWPGSYTFIKNNKSY 360 Query 360 RLPNSPQLLKLLKTVGLIYCTSANQAKQKPFGKLSAYQNDPYWVQQNCFIVQNSFK--SN 417 R+P + LL L +G ++CTSAN + QKP+ KLS YQND YW++Q CFI++++ K SN Sbjct 361 RVPKNLGLLNLFNAIGRVFCTSANISNQKPYTKLSDYQNDSYWIKQPCFIIRSTSKVQSN 420 Query 418 NEPSLIYNLDTKQIVRGSSTQLQRFQALLAKHKL 451 N PSL+YNLDTKQ+VR ++ Q ++F L+ KH+L Sbjct 421 NTPSLVYNLDTKQLVRTTAKQTKQFHKLITKHQL 454 Lambda K H a alpha 0.321 0.136 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 53426860 Query= gi|13508102|ref|NP_110051.1| hypothetical protein MPN363 [Mycoplasma pneumoniae M129] Length=102 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 120 4e-35 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 84.7 2e-22 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 120 bits (302), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 58/89 (65%), Positives = 66/89 (74%), Gaps = 0/89 (0%) Query 14 LGLSAILAACGAKGKFDQVDDGKIVLASSLTSKNAANALQAVVEKYNQVKGGNDYPIEIT 73 G S +L AC +FDQVDDGKI LASSLTSK AA AL+ VV+KYN K DYPIEI Sbjct 14 FGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYNDTKDPGDYPIEIV 73 Query 74 QITGGYDGGRGNLQTKLSVKDKTTFYNLI 102 QI GGYDGG+ ++QTK+S KDK FYNLI Sbjct 74 QIAGGYDGGKKDVQTKVSTKDKNNFYNLI 102 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 84.7 bits (208), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/104 (48%), Positives = 64/104 (62%), Gaps = 5/104 (5%) Query 1 MKFKYGATLFSGFLGLSAILA-ACGAKGKFDQVDDGKIVLASSLTSKNAANALQAVVEKY 59 MKFK L S LG A+ AC A +FDQVDDGKI LA+ +TS +A+ +L ++ KY Sbjct 1 MKFKLFF-LSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKY 58 Query 60 NQVKGGNDYPIEITQI--TGGYDGGRGNLQTKLSVKDKTTFYNL 101 N K NDYP+E+ + G Y G+ +LQ KL KDK FYNL Sbjct 59 NSQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNL 102 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6505708 Query= gi|13508103|ref|NP_110052.1| hypothetical protein MPN364 [Mycoplasma pneumoniae M129] Length=677 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 565 0.0 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 410 6e-136 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 565 bits (1457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/707 (46%), Positives = 452/707 (64%), Gaps = 94/707 (13%) Query 1 MELPLDNVDLSKLSPNFLKFNERISGVAKKANYAIPVSLSTEVLALNGPVLHYILNSA-K 59 M L D V++ KL PNFL FN RI G+ YAIP+S+ST+++ +NGPVLHYILNSA K Sbjct 117 MALNFDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARK 176 Query 60 GGNETAVTQRTASTNQQNTLQNSLKINESDPITKELWEKIQKAAETNGKAKEQGKSKKQG 119 G T+ T + +++ + +L+I +D T +LW+ IQ A+ N + E K +KQ Sbjct 177 EGTPTSTTVQATVSSRSAEKKGTLEI-ANDSETTKLWQNIQTTAQNN--SNETTKEQKQ- 232 Query 120 TEKTTTLTLLKTESSQQSNTTKDGKATSDEAIKKTWGDYQKVENGLKGYTFKASVFENWH 179 +++++ + + + + +TTK SD IK+ WG+YQ+V+ GLK +TFKAS+FENW+ Sbjct 233 VKRSSSSSSTTSTTGETKDTTK-----SDNKIKEFWGEYQEVDGGLKNFTFKASIFENWN 287 Query 180 ELLDFSARIARSFTN-IHTKETKKGTDIQGVLGIDSTPNALFTSVFAAGGGNYDNFFYKV 238 E LDF+ RIA SF + K G D+QGVLG+DS+ NAL+ +VFAAG NYDNFF+ + Sbjct 288 ETLDFATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNI 347 Query 239 --QDGRADFSNFKNKETSYQNLQKVFSDYKELIDKNGLFVNKGGSYSSNFQKFHQLAYSI 296 + G AD+SNF NK++SYQNL+ V++D+ +LI NGLFVN+GGSYSSNF+KFHQLA+S+ Sbjct 348 DKRTGYADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSV 407 Query 297 SSTSGFFYSFAGNSAKRLKFDDGNFIEFPRFTQPVKAPNKTTQSGGENNNKSENNLLGTF 356 SS+ G+ Y FA ++AKRLKF + IE+P FTQ ++APN + ++E+NLLGTF Sbjct 408 SSSGGYSYYFAKDNAKRLKFSNYA-IEYPSFTQTIQAPNSS---------ETESNLLGTF 457 Query 357 EIEDKSKKRESVESSEKSSSGTQSKSKKGKSMKTIYLYKAQIPEGKNKGDNAILITNQTV 416 ++ +K I LYK IP GK +G +AILI+N + Sbjct 458 KLSEKD----------------------------INLYKGSIPSGKQQGVDAILISNPNL 489 Query 417 IDKLEKAAKEDGKSGTQVSTIASKSTTKENQENKIIGYTSTDNLREDNKNIFDIDDLNDE 476 I+ LE+A +++ G++ +T NKIIGYT+T N+ DN+NIF + LN+E Sbjct 490 INILEQAKQKNTAQGSESTT------------NKIIGYTTTANVNVDNQNIFSVSKLNNE 537 Query 477 KYDRKIIVSATEEVLEQSNTLQSEEAVVLPAPAKYKASDSTKIAITQEPNLIGIHANEKE 536 ++ RKIIV+ATEE L+QS TLQS E++VLP P KYK++D K+ ITQ PNLIGIHANEKE Sbjct 538 QFQRKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIGIHANEKE 597 Query 537 NEETRKFVNWFLNSEQT-WESKKYSKNKQNSNEKRTPAQFFADSASYILPLKKTFDNA-- 593 N ET+KFVNWFLN T W S KN + +T A++F D ASYILPLK+ F+ + Sbjct 598 NIETKKFVNWFLNQSITDWNSNNQQKNSDQT--TKTAAEYFTDQASYILPLKEKFNKSSD 655 Query 594 -------------------------NKKEDQSKANNKTNSQRTNTYIEKALEIFKGISQN 628 N S A KTN+ +NT+ KALE+F+ + N Sbjct 656 LELKGSSSSSNLTTSSASASLLISNNSSTASSPAPKKTNN-NSNTFTAKALELFQQAANN 714 Query 629 QITSYSDPSDFRSGRFRDGIGSNFNAVVNSKVDFNKFINNFIASLGS 675 +I +SDPSDFR+G FR+ I S+FNA VNSKV FN+F+ NFI SLGS Sbjct 715 EIIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLGS 761 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 410 bits (1054), Expect = 6e-136, Method: Compositional matrix adjust. Identities = 267/684 (39%), Positives = 388/684 (57%), Gaps = 110/684 (16%) Query 1 MELPLDNVDLSKLSPNFLKFNERISGVAKKANYAIPVSLSTEVLALNGPVLHYILNSAKG 60 MEL D VD S P+FL FN IS V + YA+P ++S EVL LNGPVLHYIL+SAK Sbjct 118 MELSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKK 177 Query 61 GNETAVTQRTASTNQQNTLQNSLKINESDPITKELWEKIQKAAETNGKAKEQGKSKKQGT 120 + T ++ +AS N + SD T LW K++ AA+ N + E Sbjct 178 DSNTTLSTHSASNNSNK----GTMVVASDSETSSLWTKLEAAAKMNAQTNET-------- 225 Query 121 EKTTTLTLLKTESSQQSNTTKDGKATSDEAIKKTWGDYQKVENGLKGYTFKASVFENWHE 180 +LK+ SS+ SN T+ SD IKK WGDYQ+V+ GLK YTFKASVF NW + Sbjct 226 ------QVLKSNSSE-SNQTQ----ASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKD 274 Query 181 LLDFSARIARSFTNIHTKETKKGTDIQGVLGIDSTPNALFTSVFAAGGGNYDNFFYKVQD 240 L DF+ RIA+SFT + T TKKG ++Q V GI S NAL+T++FA+G +Y+NF + +++ Sbjct 275 LNDFATRIAKSFTKLQT-TTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKN 333 Query 241 GRADFSNFKNKE-TSYQNLQKVFSDYKELIDKNGLFVNKGGSYSSN-FQKFHQLAYSISS 298 R +FSNF NK T++QNL+ +F+ +K LID+NGL N + N + KF+QLA+ SS Sbjct 334 QRINFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSS 393 Query 299 TSGFFYSFAGNSAKRLKFDDGNFIEFPRFTQPVKAPNKTTQSGGENNNKSEN----NLLG 354 T+ F YSFA +S KRL +D IE NK +S E N S++ NL+G Sbjct 394 TARFPYSFASDSVKRLIVNDKT-IE-----------NKNNKSVFEVNLSSDSDNNSNLIG 441 Query 355 TFEIEDKSKKRESVESSEKSSSGTQSKSKKGKSMKTIYLYKAQIPEGKNKGDNAILITNQ 414 T +E+ K + LY+ Q+ K G +A+LI ++ Sbjct 442 TVSLENS---------------------------KQVSLYEKQVDSNKQIGVDALLIKDE 474 Query 415 TVIDKLEKAAKEDGKSGTQVSTIASKSTTKENQENKIIGYTSTDNLREDNKNIFDIDDLN 474 T+I+ L K+ K +QVS ++ T++ Q + +T+ + D K IFD+ LN Sbjct 475 TLINHL-KSLK------SQVSAKSASETSQTKQNKTFLAFTT---VNADQKAIFDVGKLN 524 Query 475 DEKYDRKIIVSATEEVLEQSNTLQSEEAVVLPAPAKYKASDSTKIAITQEPNLIGIHANE 534 + KII++ATE + +TLQ +EA+VL AP +++++D IA+ Q P+LIGIHANE Sbjct 525 GKT--AKIIINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANE 582 Query 535 KENEETRKFVNWFLNSEQTWESKKYSKNKQNSNEKRTPAQFFADSASYILPLKKTFDNAN 594 +E+ ET+KFVNW+LN++ WE N +TPA++ AD ASY+LP K +N N Sbjct 583 REDIETKKFVNWYLNTKVQWE----------ENSIKTPAEYVADKASYLLPFKNRLNNTN 632 Query 595 KKEDQSKANNKTNSQRTNTYIEKALEIFKGISQNQITSYSDPSDFRSGRFRDGIGSNFNA 654 N +++ A+ F + +T +++P+DF S + RDG+ SN NA Sbjct 633 SY---------------NEFVKTAVSQF---ADKNVTKFAEPADFLSNKVRDGVKSNLNA 674 Query 655 VVNSK-VDFNKFINNFIASLGSDI 677 +N+ +DF+ FIN+ LGSD+ Sbjct 675 AINNHSIDFDSFINDLTDYLGSDV 698 Lambda K H a alpha 0.307 0.125 0.338 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 83196600 Query= gi|13508104|ref|NP_110053.1| hypothetical protein MPN365 [Mycoplasma pneumoniae M129] Length=268 ***** No hits found ***** Lambda K H a alpha 0.320 0.137 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28364067 Query= gi|13508105|ref|NP_110054.1| involved in cytadherence [Mycoplasma pneumoniae M129] Length=272 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 72.0 5e-16 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 72.0 bits (175), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 48/195 (25%) Query 5 DVVRAAHLHPSYELVDWKRVGQNKLVALVRSALVRVKFQDTTSSDSNNQDTSQNALSFD- 63 D+V A L SY++ D + + L L +S V+VK++ SS SNN +SFD Sbjct 53 DLVSLAQLDSSYQIAD-QTIHNTNLFVLFKSRDVKVKYE---SSGSNN-------ISFDS 101 Query 64 TQESQKALNGSQSGSSDTSGSNSQDFASYILIFQAAPR--ATWVFERKIKLALPYVKQES 121 T + +K SY++ F + W +K +L +P V + Sbjct 102 TSQGEK--------------------PSYVVEFTNSTNIGIKWTMVKKYQLDVPNVSSD- 140 Query 122 QGSDDQGSNGKGSLYTTLQDLLVEQPVTPYTPNAGLARVNGVAQDTVHFGSGQESSWNSQ 181 + L++L++EQP+T YT N+ LA+ G Q VH GSGQ + W SQ Sbjct 141 -------------MNQVLKNLILEQPLTKYTLNSSLAKEKGKTQREVHLGSGQANQWTSQ 187 Query 182 RSQKGLKTTPLPMPS 196 R+Q L P P S Sbjct 188 RNQHDLNNNPSPNAS 202 Lambda K H a alpha 0.316 0.129 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28934199 Query= gi|13508106|ref|NP_110055.1| involved in cytadherence [Mycoplasma pneumoniae M129] Length=322 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 161 6e-46 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 161 bits (407), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 81/154 (53%), Positives = 112/154 (73%), Gaps = 8/154 (5%) Query 173 NVITQLYHTSTAQLAYLNGQIVVMSSARVPSLWYWVV---GEDQESGKATWWAKTELNWG 229 NVITQLY+ ST++LA N IVVM ++ +PS+WYWVV ++ S K TW+A T L+WG Sbjct 289 NVITQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWG 348 Query 230 TDKQKQFVENQLGFKDDSNSDSKNSNLKTQGLTQPAYLIAGLDVVADHLVFAAFKAGAVG 289 DKQKQFVENQLG+K+ ++++S N ++ TQPAYLI+G+D V D ++F+ FKAG+VG Sbjct 349 EDKQKQFVENQLGYKETTSTNSH--NFHSKSFTQPAYLISGIDSVNDQIIFSGFKAGSVG 406 Query 290 YD---MTTDSNASTYNQALVWSTTAGLDSDGGTR 320 YD ++ S++ST +QAL WSTT LDS G + Sbjct 407 YDSSSSSSSSSSSTKDQALAWSTTTSLDSKTGYK 440 Lambda K H a alpha 0.308 0.123 0.355 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35796348 Query= gi|13508107|ref|NP_110056.1| hypothetical protein MPN368 [Mycoplasma pneumoniae M129] Length=180 ***** No hits found ***** Lambda K H a alpha 0.312 0.132 0.360 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 16613935 Query= gi|13508108|ref|NP_110057.1| hypothetical protein MPN369 [Mycoplasma pneumoniae M129] Length=253 ***** No hits found ***** Lambda K H a alpha 0.316 0.134 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26458145 Query= gi|13508109|ref|NP_110058.1| hypothetical protein MPN370 [Mycoplasma pneumoniae M129] Length=737 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 234 1e-66 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 234 bits (597), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 156/403 (39%), Positives = 225/403 (56%), Gaps = 70/403 (17%) Query 13 TLTRFSTGFNLAGSVLDQVLDYVPWIGNGHRYGNNHRGVDDITAPKTGAGSSSGTSTNTS 72 + RF+TG NL S DQ LD++PWIGNG S+S + + ++ Sbjct 746 VVQRFTTGPNLDSSTFDQFLDFLPWIGNGK------------------PFSNSPSPSTSA 787 Query 73 GSRSFLPTFSNVGVGLKANVQGTLGGSQTTTTGKDIPKWPTLDPANLQLWTGAGWRNDKA 132 S + LPTFSN+ VG+K+ + L T +W + + +WTGAG+R A Sbjct 788 SSSTPLPTFSNINVGVKSMITQHLNKENT--------RWVFIPNFSPDIWTGAGYRVQSA 839 Query 133 SNKQSDENHTTFKSATGSGQQGGSTTGGSAGNPDSLKQDKISKSGQNLTTQDGAPQSNST 192 + K N F +Q + + +P+S +K++ SG Sbjct 840 NQK----NGIPF-------EQVKPSNNSTPFDPNS-DDNKVTPSG--------------G 873 Query 193 TESASNYDHLPPNLTPTSDWPNALSFTNKNNAQRAQLFLRGLLGSIPVLVNRSGSDDSNK 252 + + Y LP +++PTSDW NAL+FTNKNN QR QL LR LLG+IPVL+N+SG + Sbjct 874 SSKPTTYPALPNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLINKSGDSNDQF 933 Query 253 FQATDQKWSYTDLKSDQTKLNLPAYGEVNGLLNPALVETYFGTTRAGGSGSNTTSS-PGI 311 + ++QKW K++ + NLP +GEVNGL N AL+ TY G G+NT S+ P I Sbjct 934 NKDSEQKWD----KTETNEGNLPGFGEVNGLYNAALLHTY------GFFGTNTNSTDPKI 983 Query 312 GFKIPEQNNDSKAVLITPGLAWTPQDVGNLVV-SGTSLSFQLGGWLVTFTDFVKPRAGYL 370 GFK + ++ S + L+ GL WT QDVGNLVV + TS FQLGGW +TFTDF++PR GYL Sbjct 984 GFKA-DSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYL 1042 Query 371 GLQLTGLDASDATQRALIWAKRPWAAFRGSWVNRLGRVESVWD 413 G+ L+ L + +IWA +PW +F+GS+++ G +S+WD Sbjct 1043 GITLSSLQ-----DQTIIWADQPWTSFKGSYLDSDGTPKSLWD 1080 Score = 69.3 bits (168), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 46/133 (35%), Positives = 65/133 (49%), Gaps = 12/133 (9%) Query 602 FLNCSLTLFIWTTASLATGLTVVGHFTSTTTTLKRQQFSYTRPDEVALRHTNAINPRLTP 661 FL +LTL + TG+ F F+Y +P +++++H A++ LTP Sbjct 15 FLTAALTL------GVITGVGGYFLFNQNKQRSSVSNFAY-QPKQLSVKHQQAVDETLTP 67 Query 662 WTYRNTSFSSLPLTGENPGAWALVR---DN-TAKGITAGSGSQQTTYDPTRTEAALTTAT 717 WT+ N +FSSL +TGENPG++ LVR DN +T S Y E L Sbjct 68 WTWNNNNFSSLKITGENPGSFGLVRSQNDNLNISSVTKNSSDDNLKY-LNAVEKYLDGQQ 126 Query 718 TFVLRRYDLAGRC 730 F +RRYD GR Sbjct 127 NFAIRRYDNNGRA 139 Lambda K H a alpha 0.314 0.129 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 91516260 Query= gi|13508110|ref|NP_110059.1| hypothetical protein MPN371 [Mycoplasma pneumoniae M129] Length=211 ***** No hits found ***** Lambda K H a alpha 0.322 0.134 0.473 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20664144 Query= gi|13508111|ref|NP_110060.1| similarity to pertussis toxin subunit s1 [Mycoplasma pneumoniae M129] Length=591 ***** No hits found ***** Lambda K H a alpha 0.319 0.134 0.422 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 72048564 Query= gi|13508112|ref|NP_110061.1| hypothetical protein MPN373 [Mycoplasma pneumoniae M129] Length=204 ***** No hits found ***** Lambda K H a alpha 0.317 0.133 0.376 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 19869930 Query= gi|13508113|ref|NP_110062.1| hypothetical protein MPN374 [Mycoplasma pneumoniae M129] Length=229 ***** No hits found ***** Lambda K H a alpha 0.313 0.128 0.368 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23247162 Query= gi|13508114|ref|NP_110063.1| hypothetical protein MPN375 [Mycoplasma pneumoniae M129] Length=129 ***** No hits found ***** Lambda K H a alpha 0.318 0.133 0.429 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9955540 Query= gi|13508115|ref|NP_110064.1| hypothetical protein MPN376 [Mycoplasma pneumoniae M129] Length=1140 ***** No hits found ***** Lambda K H a alpha 0.313 0.130 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 145441540 Query= gi|13508116|ref|NP_110065.1| hypothetical protein MPN377 [Mycoplasma pneumoniae M129] Length=74 ***** No hits found ***** Lambda K H a alpha 0.310 0.133 0.336 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4302620 Query= gi|13508117|ref|NP_110066.1| DNA polymerase III alpha subunit [Mycoplasma pneumoniae M129] Length=872 Score E Sequences producing significant alignments: (Bits) Value gi|12045116|ref|NP_072927.1| DNA polymerase III, subunit alpha (p... 969 0.0 >gi|12045116|ref|NP_072927.1| DNA polymerase III, subunit alpha (polC-2) [Mycoplasma genitalium G-37] Length=874 Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/870 (56%), Positives = 628/870 (72%), Gaps = 6/870 (1%) Query 1 MFVNLHTNSYYNFLNSTLSPQKLVDLAVQDQQVAVCLTDPNLFGATEFFLACQKAHIKPL 60 MFVNLHTNSYYNFLNS LSP+KLV+LA+ DQQ AV +TDPNLFGA EFF+ C++ +IKP+ Sbjct 1 MFVNLHTNSYYNFLNSALSPKKLVNLAINDQQKAVAITDPNLFGAVEFFITCKQNNIKPI 60 Query 61 IGLSVTVRHYEQNVNLLVIAQTNRGYQNLMCLALVKDQPDLQLEPFLD---GNVVIICTQ 117 IGL++TV + + +V LL+IA++N+G+Q L +AL+ Q L++ +D VIIC+ Sbjct 61 IGLNLTVEYQKNDVKLLLIAKSNKGFQTLNKIALI--QQKLEINSLVDQLTDIAVIICSL 118 Query 118 TELRLNTANPVYLAHGLSGRYPKIAVTQKPVKCQNTNKDLTLLLTLKQISQINSEHFQPL 177 T + +T VY A G+ IA+ V C+ TN D +L LKQ+ Q + Sbjct 119 TTWK-STYKDVYQAKGIEINQTPIAILANAVNCEKTNSDQVVLTVLKQMKQNQTGKITTF 177 Query 178 EWKLSRSLNEIQLDPPLLQQLRHQPFLSQKAAQQIFSEEELGNLQKLVEQSQWDLTKLKA 237 +W L + LN+I ++ L + QPFL QK AQQ+FSE EL NL LV + + DL LKA Sbjct 178 DWDLKQKLNQISINENLKVKSEIQPFLDQKTAQQLFSETELNNLNDLVNRCELDLEHLKA 237 Query 238 SSLQVSHNDAQMLSEQCQLALTEFLKLNPQLNKQLYEERLAKELEIINSLHFASYFLVVS 297 +SL ++ NDA +L CQ L +FL N LNK+ Y+ RL KEL +IN L+FASYFLVV+ Sbjct 238 ASLSLTDNDAAVLESLCQTNLKQFLDKNQDLNKKAYQLRLEKELNVINKLNFASYFLVVN 297 Query 298 DLVQFAHNNDILIGPGRGSAVGSLVAFLLKITQIDPVANNLIFERFISRHRQGLPDIDID 357 DLV +A DILIG GRGSAVGSLVAFLL IT+IDPV + LIFERFIS HRQ LPDIDID Sbjct 298 DLVNYAFKKDILIGSGRGSAVGSLVAFLLNITKIDPVQHQLIFERFISTHRQDLPDIDID 357 Query 358 IMETKRDLVIDYVMQKYGREQCAQIVTFQKFKTRSALRDVGKVFNHIEGAEDLLGKLPKD 417 IME KR +I+Y+ +KYG+E CAQIVTFQ+FKTRSA+++V K+FN ++ +LG LPKD Sbjct 358 IMENKRAEMINYLFEKYGKENCAQIVTFQRFKTRSAVKEVAKLFNDYGISDMILGVLPKD 417 Query 418 KSLLELDVNGVTDPVLQLSLKSFRLLWEVAREIINFPRQPSIHASGVVIVTEPLITTIPL 477 +++ D+ D LQL L+ F L+ E+A I++FPRQ SIHASG+VI + LI TIPL Sbjct 418 QTITFTDLKATEDSALQLCLQQFGLIVELALAIVDFPRQSSIHASGIVIASNSLIKTIPL 477 Query 478 MVGNNNNYVTQVSMDWLEWYNLNKFDLLGLINLTMIHEVVQAVKPKEVSVQQFLQQIPLD 537 + +NN+++TQVSM+WL ++NLNKFDLLGLINLTMI +V+ +KP +V QFL I Sbjct 478 LQLDNNHFLTQVSMEWLSFFNLNKFDLLGLINLTMISDVITQIKPSNQTVNQFLNTISWT 537 Query 538 DEATFTNLTNQATLGVFQLESFGMKKVLKQIKPHNLHDLAIVLALYRPGPQDNINTFIAN 597 D+ TF NL N+ TLG+FQLESFGMKK+L QIKP ++ LAIVLALYRPG QDNIN FI Sbjct 538 DQNTFINLVNEDTLGIFQLESFGMKKLLVQIKPKTINQLAIVLALYRPGAQDNINLFINR 597 Query 598 RNLGFDTSDIDPRILPILKETYGVLIFQEQVINIAKTVANYSLETADSFRRAISKKNLQV 657 + G+D SDIDPRILPI+K TYGVLIFQEQ+INI K VANYSLE ADSFRRAISKK++++ Sbjct 598 LHNGYDQSDIDPRILPIVKNTYGVLIFQEQIINIVKVVANYSLEEADSFRRAISKKDVKL 657 Query 658 IQDNMRSFYEGALANNFSLKAATTIFNYIQRFAGYGFNLSHALGYALLSYWTAWLKTHYF 717 IQ N R+F+E A+ NNF LK T IF+YI+RFA YGFNLSHALGYALLSYWTAWLKT+Y Sbjct 658 IQKNKRNFFERAVQNNFDLKTTTKIFSYIERFANYGFNLSHALGYALLSYWTAWLKTNYP 717 Query 718 EQFNLWWLNHEQGKKEKQKQLLNEFISSGYEICPPLINKAKSDFSVQDKKLYLGFKLING 777 F LW LNH Q K+KQK ++ SG EI PPL+NKA+ + +++KK+YLG LI G Sbjct 718 VYFYLWLLNHFQSSKDKQKLIIRTLEKSGIEIYPPLLNKAQPNSVIENKKIYLGLNLIKG 777 Query 778 IGDKQAHALEHVQEVLKQNPNLSLIATVNLCLSKTVGGLELKDITLLQQAGCFNCFNYTV 837 I D+ L+ VQ +++ NL L V+ CL KT+G + LKD+ LL+ GCF+ F YT Sbjct 778 INDRYIQNLQKVQHLIQTQNNLQLTDVVSWCLDKTIGDIPLKDLLLLKTMGCFDFFEYTY 837 Query 838 DFNLAKSFWVQSNHELFPKIPLDQPPVINW 867 DFN AK FW++S+H LF ++PL++ W Sbjct 838 DFNDAKDFWIKSDHLLFTRMPLEKKDSNFW 867 Lambda K H a alpha 0.321 0.137 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 109712538 Query= gi|13508118|ref|NP_110067.1| 5'-3' exonuclease (complete) [Mycoplasma pneumoniae M129] Length=291 Score E Sequences producing significant alignments: (Bits) Value gi|12045117|ref|NP_072928.1| 5'-3' exonuclease, putative [Mycopla... 422 4e-152 >gi|12045117|ref|NP_072928.1| 5'-3' exonuclease, putative [Mycoplasma genitalium G-37] Length=291 Score = 422 bits (1084), Expect = 4e-152, Method: Compositional matrix adjust. Identities = 198/291 (68%), Positives = 240/291 (82%), Gaps = 0/291 (0%) Query 1 MKNAILIDGNSLAYRAYFATWQQVEFAKLHNLPFNNAIRTMLMMCWNLLQSKQYDYGVIS 60 MK AILIDGNSLAYRAYFATW+QVE+AK +NLPFNNAIRTML+MCWNL+++ Y YG++S Sbjct 1 MKKAILIDGNSLAYRAYFATWKQVEYAKQNNLPFNNAIRTMLLMCWNLIKANVYQYGIVS 60 Query 61 FDTKAPTFRDQLYSEYKSKRSKTPSELLVQIPVVKESLRHLGFLVCEQDGFEADDLIGSY 120 FDTKAPTFRDQ+Y YK KR KTP ELLVQIP++K++L +LGFLVCE+DGFEADDLIGSY Sbjct 61 FDTKAPTFRDQIYEGYKQKRVKTPVELLVQIPLIKQALVYLGFLVCEKDGFEADDLIGSY 120 Query 121 ARLMTQNNVAVDIYSSDRDLLQLVDSMTSVWLCVKGTKEMKEYNTDNFAEQFFGLTPKQV 180 A L T+ + VDIYSSDRD+LQLV++ T+V+LC+KGTKEM YN +NF F+GL P QV Sbjct 121 ANLFTKQEITVDIYSSDRDMLQLVNAFTNVFLCIKGTKEMVMYNNENFKSLFYGLAPYQV 180 Query 181 IEYKGLVGDNSDNLTGIKGIGPKKGIDLLKQYGTIDNIFANFDKLSKALQTILQGQIDTA 240 +EYKGLVGDNSDNL GIKGIGP KGI+LL+QYGTIDNI+ NF+ L LQ +L Q + A Sbjct 181 VEYKGLVGDNSDNLAGIKGIGPIKGIELLQQYGTIDNIYTNFNNLPNQLQKLLNNQKEIA 240 Query 241 KKFSFLASIKTDIKLNDDIVHAALKPIDKQALLELLDKYGIKALAQKFSQL 291 K FSFLA IKTDI+L+ +I LKPI KQAL++LL + I L +KFS++ Sbjct 241 KTFSFLAKIKTDIELDQNIDLTGLKPIQKQALIQLLSENKINTLVEKFSKI 291 Lambda K H a alpha 0.320 0.136 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31392829 Query= gi|13508119|ref|NP_110068.1| formamidopyrimidine-DNA glycosylase [Mycoplasma pneumoniae M129] Length=277 Score E Sequences producing significant alignments: (Bits) Value gi|12045118|ref|NP_072929.1| formamidopyrimidine-DNA glycosylase ... 375 5e-134 >gi|12045118|ref|NP_072929.1| formamidopyrimidine-DNA glycosylase (mutM) [Mycoplasma genitalium G-37] Length=284 Score = 375 bits (963), Expect = 5e-134, Method: Compositional matrix adjust. Identities = 182/274 (66%), Positives = 216/274 (79%), Gaps = 2/274 (1%) Query 1 MPELPEVATVITELKSCVLNKPVKQVKVHLDKVLKNTNVKQLNDALVNHSFVDIKRRGKY 60 MPELPEV TVI ELK VLNKP+ QV+V+L KVLKN + + LN L N F DIKR+GKY Sbjct 1 MPELPEVTTVINELKETVLNKPLDQVQVNLRKVLKNIDPQLLNKQLKNQFFTDIKRKGKY 60 Query 61 IIFCLSNGLFLVSHLRMEGKYFFEAKGSQFDLNHVLVEFLFQDGDQLNYHDTRQFGTFHL 120 IIF LSNGL+LVSHLRMEGKYFFE +GS+F+ HVLVEF F DG QLNYHDTRQFGTFHL Sbjct 61 IIFLLSNGLYLVSHLRMEGKYFFEERGSKFNQKHVLVEFHFDDGSQLNYHDTRQFGTFHL 120 Query 121 FNRYQFENARELNKLALDPLDQEFNHQAIFNKGHKSNKKIKTFILDQTNISGIGNIYADE 180 + + E A +LNKLA DPL+ F+++ IF K S +K+KTFILDQT ISGIGNIYADE Sbjct 121 YEK--LEQAAQLNKLAFDPLEAGFDYRKIFQKAQNSKRKVKTFILDQTVISGIGNIYADE 178 Query 181 ILFASKIHPETLAKNLNLSQYQLICQNATDILKKAVEMKGTTIGTFTFKKDHTGGYQHFL 240 ILFASKI+PET+ L + + +++C+NAT IL KA+ MKGTTI +F+FKKDHTGGYQ+FL Sbjct 179 ILFASKINPETMVDQLTIKEIEILCKNATKILAKAIVMKGTTISSFSFKKDHTGGYQNFL 238 Query 241 KIHGKKGKQCQSCNTTIIKKKINGRGSYICEKCQ 274 K+H KK + C CN I+KKKINGRGSY C CQ Sbjct 239 KVHTKKDQPCSVCNQLIVKKKINGRGSYFCLNCQ 272 Lambda K H a alpha 0.322 0.138 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29646864 Query= gi|13508120|ref|NP_110069.1| HAD superfamily hydrolase/phosphatase [Mycoplasma pneumoniae M129] Length=292 Score E Sequences producing significant alignments: (Bits) Value gi|12045119|ref|NP_072930.1| hypothetical protein MG263 [Mycoplas... 403 8e-145 gi|12045121|ref|NP_072932.1| hypothetical protein MG265 [Mycoplas... 68.9 2e-15 >gi|12045119|ref|NP_072930.1| hypothetical protein MG263 [Mycoplasma genitalium G-37] Length=291 Score = 403 bits (1036), Expect = 8e-145, Method: Compositional matrix adjust. Identities = 193/292 (66%), Positives = 235/292 (80%), Gaps = 1/292 (0%) Query 1 MKNKIKYVYSDLDGTIVSWNPKNQFTHQGKTYKNLHEVSHATVTAFKQLQAQGIKIGIVT 60 MKN+IKY+YSDLDGTIVSWNPK +F +Q K+YKN HEVS AT++AF +LQ +GIK+GIVT Sbjct 1 MKNEIKYLYSDLDGTIVSWNPKTEFVYQNKSYKNFHEVSDATISAFYRLQQKGIKVGIVT 60 Query 61 GRDYCRVRWLEKYLNTDLPTITLDGAIIYFRDEIIRQEVLDKEFIHGINQIVKRYPTAAF 120 GRDYCRV WLEK L T LPTITLDGAII++++EI+ Q LD FI GIN IVKR+P AA+ Sbjct 61 GRDYCRVLWLEKQLRTGLPTITLDGAIIFYQNEILSQTYLDDRFIEGINNIVKRFPEAAY 120 Query 121 KLNMGWGNYYTCNPSLIFEGDHAYREHFNADSKFYRKEIDNTVDWDINNMKVNQVYFDTF 180 KLN GW +Y+T NPS+IFE D+A+ +FN ++K +K ID+T +WD+N +KVNQVYFD Sbjct 121 KLNSGWISYFTKNPSVIFEIDYAFLGYFNPNTKLQKKFIDSTENWDLNKLKVNQVYFDID 180 Query 181 TCPEPMIQELDNLVEKSDVTAKSYRHSLYIIKKGVSKASALQNLQRDFLVEMKPANTIVF 240 TCP M +E+ L+ SDV AK Y HS+YIIK GVSKASALQ+L + F + + NTIV Sbjct 181 TCPLAMQKEIIELISVSDVNAKIYEHSMYIIKNGVSKASALQSLNQ-FAIPITKDNTIVC 239 Query 241 GDGDNDIEMMQWADHSVSLTGSDPECYKLAKYHTDSVDDDGIAKWINKNLLC 292 GDGDNDIEMMQWA HSVSL GS+P+C+ LAKYHTDSVD+DGIA WI KNLLC Sbjct 240 GDGDNDIEMMQWAKHSVSLIGSNPKCFALAKYHTDSVDNDGIANWIEKNLLC 291 >gi|12045121|ref|NP_072932.1| hypothetical protein MG265 [Mycoplasma genitalium G-37] Length=278 Score = 68.9 bits (167), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/288 (24%), Positives = 132/288 (46%), Gaps = 45/288 (16%) Query 4 KIKYVYSDLDGTIVSWN--PKNQFTHQGKTYKNLHEVSHATVTAFKQLQAQGIKIGIVTG 61 ++K + DLDGT++S N P Q TV K LQ +GI+I +G Sbjct 2 ELKNIIFDLDGTLLSSNQIPLEQ-----------------TVEFLKDLQKKGIRITFASG 44 Query 62 RDYCRVRWLEKYLNTDLPTITLDGAIIY-FRDE-IIRQEVLDKEFIHGINQIVKRYPTAA 119 R + +R ++ +LP I+ +GA++Y F E + + +D + I I Q++ + Sbjct 45 RSHILIRNTATFITPNLPVISSNGALVYDFASEKPVHIKPIDNKVIPAIMQMLLEFQETF 104 Query 120 FKLNMGWGNYYTCNPSLIFEGDHAYREHFNADSK----------FYRKEIDNTVDWDINN 169 + +YT F + + + S+ + + + +D+D Sbjct 105 Y--------FYTDKKVFAFTHELDSAKILSTRSQIVGIDLIENNYIVNKFEKALDFDFKQ 156 Query 170 MKVNQVYFDTFTCPE-PMI-QELDNLVEKSDVTAKSYRHSLYIIKKGVSKASALQNLQRD 227 + ++ T + P + ++LD + + + V++ ++ +L I++K V+KA L+ L + Sbjct 157 HTITKILLVTKNREKVPFLAKQLDQIQDINYVSSMTF--ALDIMQKDVNKAYGLKVLVDN 214 Query 228 FLVEMKPANTIVFGDGDNDIEMMQWADHSVSLTGSDPECYKLAKYHTD 275 + + P T+VFGD DND+E+ Q V+L K AK+ T+ Sbjct 215 Y--NLDPEKTMVFGDADNDVEIFQSVKWPVALVNGTDLAKKNAKFITE 260 Lambda K H a alpha 0.319 0.136 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31534878 Query= gi|13508121|ref|NP_110070.1| hypothetical protein MPN382 [Mycoplasma pneumoniae M129] Length=200 Score E Sequences producing significant alignments: (Bits) Value gi|12045120|ref|NP_072931.1| hypothetical protein MG264 [Mycoplas... 204 4e-69 >gi|12045120|ref|NP_072931.1| hypothetical protein MG264 [Mycoplasma genitalium G-37] Length=198 Score = 204 bits (519), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 96/192 (50%), Positives = 134/192 (70%), Gaps = 1/192 (1%) Query 1 MLIAVVGKAGVGKTTVLQYIADYFHFPVFFADRFIHQQYANGQAGYAIVKQQFGAQFVNH 60 MLIA+VGK GVGKT++LQY+ D +HF VF+AD FIH+QY GY ++ FG +FVN Sbjct 1 MLIAIVGKPGVGKTSLLQYLKDNYHFSVFYADSFIHEQYQKNNPGYQLIMDHFGKEFVNQ 60 Query 61 EAVDRKQLAQYVFNQPDELKRLSNLTKPLVQEWLNQLKAQFQDKIALVEIAVMLNYWNDY 120 VDRK+LA YVF+ +++LS +TKPL+ W+ LK QFQ K+AL+EIAVMLNYWN+Y Sbjct 61 TEVDRKKLANYVFSDDKLIEKLSLVTKPLLIAWIKSLKTQFQKKLALIEIAVMLNYWNEY 120 Query 121 RPFFDEVIQIERDAKIVKQALKARGVDVEQVQKLIADPTYPILTVINNSTVAECALHVTQ 180 R FD VI++ERD ++V AL+ R ++V+ LI +P I T+ NN ++A AL + + Sbjct 121 RSLFDYVIKLERDDQLVNLALQQRNSH-KKVKDLIKEPNCKIDTIFNNDSIATAALKLIK 179 Query 181 FLESIAKSDKCH 192 LE+ + +KC Sbjct 180 LLETFLERNKCR 191 Lambda K H a alpha 0.323 0.136 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 19293990 Query= gi|13508122|ref|NP_110071.1| HAD superfamily hydrolase/phosphatase [Mycoplasma pneumoniae M129] Length=282 Score E Sequences producing significant alignments: (Bits) Value gi|12045121|ref|NP_072932.1| hypothetical protein MG265 [Mycoplas... 330 4e-116 >gi|12045121|ref|NP_072932.1| hypothetical protein MG265 [Mycoplasma genitalium G-37] Length=278 Score = 330 bits (845), Expect = 4e-116, Method: Compositional matrix adjust. Identities = 160/276 (58%), Positives = 210/276 (76%), Gaps = 1/276 (0%) Query 4 KVQNLIFDLDGTLLSWGHEPLPQTVTFLKELQKQGFKITFATGRSHILIRNTTQFIQPDL 63 +++N+IFDLDGTLLS PL QTV FLK+LQK+G +ITFA+GRSHILIRNT FI P+L Sbjct 2 ELKNIIFDLDGTLLSSNQIPLEQTVEFLKDLQKKGIRITFASGRSHILIRNTATFITPNL 61 Query 64 PVISSNGALIYDFAREKALHMTQLAPQSVVPIMRLLLQLEESFCIYTDKKVFGFEKPGIP 123 PVISSNGAL+YDFA EK +H+ + + + IM++LL+ +E+F YTDKKVF F + Sbjct 62 PVISSNGALVYDFASEKPVHIKPIDNKVIPAIMQMLLEFQETFYFYTDKKVFAFTHE-LD 120 Query 124 CKRLRTTQSKIVEPDITQNNFTINPLTDASKFDFATQNITKILLITEDRGRISKITKHLD 183 ++ +T+S+IV D+ +NN+ +N A FDF ITKILL+T++R ++ + K LD Sbjct 121 SAKILSTRSQIVGIDLIENNYIVNKFEKALDFDFKQHTITKILLVTKNREKVPFLAKQLD 180 Query 184 AIENISYVSSMTFALDIMHKDVNKAYGLKALEQQTGLDPQMTMVFGDGDNDVEIFNAVKY 243 I++I+YVSSMTFALDIM KDVNKAYGLK L LDP+ TMVFGD DNDVEIF +VK+ Sbjct 181 QIQDINYVSSMTFALDIMQKDVNKAYGLKVLVDNYNLDPEKTMVFGDADNDVEIFQSVKW 240 Query 244 SVAMANGSDLAKQNATFISEFDNDHDGIYHFLQCFL 279 VA+ NG+DLAK+NA FI+E+DN+H+GIY FL+ FL Sbjct 241 PVALVNGTDLAKKNAKFITEYDNNHNGIYFFLKKFL 276 Lambda K H a alpha 0.321 0.137 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30359529 Query= gi|13508123|ref|NP_110072.1| leucyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=793 Score E Sequences producing significant alignments: (Bits) Value gi|12045122|ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycop... 1223 0.0 gi|12045191|ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycopl... 77.8 2e-16 >gi|12045122|ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycoplasma genitalium G-37] Length=792 Score = 1223 bits (3165), Expect = 0.0, Method: Compositional matrix adjust. Identities = 575/791 (73%), Positives = 667/791 (84%), Gaps = 0/791 (0%) Query 1 MYNHNLLEEKWLQLWKTKQVNRFFDDKTKPKYYILDMFPYPSAAGLHLGHVRAYTITDVL 60 MYNHNL+EEKWL+ WK K VNRF D K KYY+LDMFPYPSAAGLHLGHVRAYTITDV+ Sbjct 1 MYNHNLIEEKWLKKWKNKDVNRFESDSNKKKYYVLDMFPYPSAAGLHLGHVRAYTITDVI 60 Query 61 SRYHKAKGFNVIHPIGFDAFGLPAEQYAIASNKHPGDWTDKNITNFIEQLTAFGFDYDYQ 120 SRY+KAKGFNVIHPIGFDAFGLPAEQYAI SN++PG WTD+NI NFI QLT+FGFDYDY Sbjct 61 SRYYKAKGFNVIHPIGFDAFGLPAEQYAINSNQNPGSWTDQNINNFINQLTSFGFDYDYH 120 Query 121 LSLKTTDPRYYQYTQWIFGQLFEAGLAEVKEIDVNWCAELGTVLANEEVLIDSNGNAVSE 180 LSLKTTDPRYY+YTQWIF +LF+A LAE+ +IDVNWC +LGTVLANEEVLIDSNGNAVSE Sbjct 121 LSLKTTDPRYYKYTQWIFSELFKANLAELVDIDVNWCEQLGTVLANEEVLIDSNGNAVSE 180 Query 181 RGEFPVTKRKMKQWVLKITAFAESLLNGLAELDWHQSIKEMQTNWIGKSEGVEVTFDIEN 240 RG F V KRKMKQWVLKIT FA++LL GL LDW + IKEMQ NWIGKS+GV + F +++ Sbjct 181 RGSFSVEKRKMKQWVLKITTFADALLEGLDTLDWPEPIKEMQRNWIGKSKGVTINFQLKD 240 Query 241 SKETITIFTTKVQTIFGVTFLALSNSHPLVKEVAKTNPKIAQFLQKQAQKTTTVKQPETL 300 KE I IFTTK QTIFGV+FLA+S +H L K++A+TN K+A FL+KQ QKTTT+KQ TL Sbjct 241 HKEAIAIFTTKPQTIFGVSFLAVSTNHWLAKKIAETNKKVASFLKKQLQKTTTLKQKATL 300 Query 301 HDGVDLKLKAINPATNTAIPLYVANYVVEGYGTDAVMGVPAHNENDNFFARKQKLPIITV 360 +DG+DL AI+P TN IP+YVANYV+EGYGTDA+MGV AHNENDNFFARKQKL II V Sbjct 301 YDGIDLLTNAIHPLTNELIPVYVANYVIEGYGTDAIMGVGAHNENDNFFARKQKLKIINV 360 Query 361 IDKQERLQHSGQFSGLNSQTANTQITQMLVERQKAKKTTVYKLRDWIFSRQRYWGEPFPI 420 IDK+ERLQ+S ++GL ++ A IT L+ + KAK TTVYKLRDWIFSRQRYWGEPFPI Sbjct 361 IDKKERLQNSFAYNGLTTKEAQVAITNELISQNKAKLTTVYKLRDWIFSRQRYWGEPFPI 420 Query 421 LFDENNQPHLVKELPVTLPALANYQPDGSTNPPLWRNQEWAKVKQGNQTFTRETSTMPQW 480 +FDENN PHLV++LPV LP L NY+PDGS N PL RNQ W + + N + RET+TMPQW Sbjct 421 IFDENNTPHLVEQLPVELPLLENYKPDGSGNSPLMRNQAWVNIVKDNIHYQRETNTMPQW 480 Query 481 AGSCWYYLGYLMLINNENFWPIDSREAKDLFERYLPVDLYVGGAEHAVLHLLYARFWHQF 540 AGSCWYYLGYLMLI N NFWPIDS+EAK LF++YLPVDLYVGGAEHAVLHLLYARFWH+F Sbjct 481 AGSCWYYLGYLMLIKNPNFWPIDSKEAKKLFDQYLPVDLYVGGAEHAVLHLLYARFWHKF 540 Query 541 LYQKGIVTTKEPFKKLINQGMVLGPDGKKMSKSKGNTINPTPLIDSHGADALRLYLMFMG 600 L+ K +V+TKEPF+KLINQGMVLGPDGKKMSKSKGNTINPTPL+DSHGADALRLYLMFMG Sbjct 541 LFDKKLVSTKEPFQKLINQGMVLGPDGKKMSKSKGNTINPTPLVDSHGADALRLYLMFMG 600 Query 601 PISAALTWLDDGLNGMRRWLDRVHNFFHKENIIKETVDQETVYGYNLFLKRSFEHLEKQE 660 PISA+LTW D+GLNGMRRWLDRV+NFF ++ + V QET++ YNLFLK S+ HL+K E Sbjct 601 PISASLTWNDEGLNGMRRWLDRVYNFFFNHAVVTDQVSQETIFAYNLFLKNSYCHLDKHE 660 Query 661 LNLVISQMMIFLNLLYKTKQLTLAYAKGFLTVLSFFAPYLAEELNAKLGMEPFIVHAQLP 720 LNLVIS+MMIFLN LYKTK+++L YAKGFLTVLSFFAP+LAEELN K G+EPF+V + Sbjct 661 LNLVISEMMIFLNFLYKTKKISLNYAKGFLTVLSFFAPFLAEELNEKCGLEPFVVKQAIS 720 Query 721 NVDNSVLETDKVKIILSVNGRFKGTKEFAKGVDEQTVLKAFKTDPEFQALFDQPLARVVF 780 VD + ET K K+ILS+NG+FK KEF KG E VL++FK D E + +QP+ RVV+ Sbjct 721 LVDYQLFETAKTKVILSINGKFKAAKEFTKGSLEIDVLESFKQDKEINDILNQPIERVVY 780 Query 781 VPNRIINVLLK 791 V +RIINVLLK Sbjct 781 VQDRIINVLLK 791 >gi|12045191|ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycoplasma genitalium G-37] Length=837 Score = 77.8 bits (190), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 121/533 (23%), Positives = 194/533 (36%), Gaps = 133/533 (25%) Query 310 AINPATNTAIPLYVANYVVEGYGTDAVMGVPAHNENDNFFARKQKLPIITVIDKQERL-Q 368 +NP T IP+ +YV +GT + PAH+ ND K K ++ ID L Q Sbjct 248 VVNPLTGKQIPVVTDSYVDIKFGTGILKCTPAHDFNDYEINTKYKFDFLSCIDSNGILNQ 307 Query 369 HSGQFSGLN------------------------------SQTANTQITQMLVER------ 392 ++ +F GL+ S+ + T + ML ++ Sbjct 308 NASKFQGLSVLQARNKIVKWLEKNKLLVKSIPLTSNVGFSERSGTVVEPMLSKQWFVDLP 367 Query 393 -------------------QKAKKTTVYKLRDWIFSRQRYWGEPFPILFDENNQPHLVKE 433 K + KL+ W SRQ WG P+ F+ N +V E Sbjct 368 KLKDHLYLKKYPDFIPKRFNKQVSNWLNKLKPWCISRQLIWGHKIPVWFENNTGEIVVGE 427 Query 434 LPVTLPALANYQPDGSTNPPLWRNQEWAKVKQGNQTFTRETSTMPQWAGSCWYYLGYLML 493 P + Q +TR + W S Sbjct 428 KP----------------------------SKNLQNYTRSKDVLDTWFSS---------- 449 Query 494 INNENFWPIDSR--EAKDLFERYLPVDLYVGGAE---HAVLHLLYARFWHQFLYQKGIVT 548 + WP+ E D F +L V G + VL +L+ F+ T Sbjct 450 ----SLWPLICLNWEQDDSFHE---TELLVTGYDILFFWVLRMLFNSFFE---------T 493 Query 549 TKEPFKKLINQGMVLGPDGKKMSKSKGNTINPTPLIDSHGADALRLYLMFMGPISAALTW 608 K PFK ++ G+V +KMSKS N I+P LI ++GADA+RL+L L + Sbjct 494 KKLPFKTVLIHGLVRDEQNRKMSKSLNNGIDPVDLIRNYGADAVRLFLCSNHTPGDDLIF 553 Query 609 LDDGLNGMRRWLDRVHNFFHKENIIKETVDQETVYGYNLFLKRSFEHLEKQELNLVISQM 668 + + +L+++ N + +I+ DQE Y + L K L+ VI ++ Sbjct 554 SEQKIKSAWNFLNKLWNV--TKFVIQLENDQEISYDLDKLSLSETWILAK--LDKVIQKI 609 Query 669 MIFLNLLYKTKQLTLAYAKGFLTVLSFFAPYLAEELNAKLGMEPFIVHAQLPNVDNSVLE 728 L+ + LA A L + F + EP + QL SVL Sbjct 610 TKLLD------KFQLALANQIL--VKFVWDDFCNTFIEAIKKEPNQLKPQLFYTAKSVLS 661 Query 729 TDKVKIILSVNGRFKGTKEFAKGVDEQTVLKA---FKTDPEFQALFDQPLARV 778 + I+LS+ F + + + + ++V++A T + LFD LA + Sbjct 662 N--IAILLSITVPFLSERIYQQ-FNNKSVMQATWPLATKIKIPKLFDLVLAAI 711 Lambda K H a alpha 0.319 0.136 0.411 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 98796555 Query= gi|13508124|ref|NP_110073.1| hypothetical protein MPN385 [Mycoplasma pneumoniae M129] Length=114 Score E Sequences producing significant alignments: (Bits) Value gi|12045123|ref|NP_072934.1| hypothetical protein MG267 [Mycoplas... 153 2e-51 >gi|12045123|ref|NP_072934.1| hypothetical protein MG267 [Mycoplasma genitalium G-37] Length=115 Score = 153 bits (386), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 71/113 (63%), Positives = 88/113 (78%), Gaps = 0/113 (0%) Query 2 LLKRLIKLAIFLFFVAVGFIIFIGSFWLNTYNTKEWANLLAEKDASGLIVQIIPNINQWF 61 LL +L+K+AI +F + +GF IFIGSFWLNTY T +WA+LLA DASG+I+ I PNIN WF Sbjct 3 LLFKLVKIAILVFLMVIGFFIFIGSFWLNTYQTAQWADLLASSDASGIILTIFPNINSWF 62 Query 62 KGTVEQQQKLFQTLVHFFIPVGFGLLFGIAVAIIADLFYHLIKYLIKRSFKKN 114 TV Q LF+T+VHFFIPVGFGLLFG+ +AII D+ Y L KY IKRS++ N Sbjct 63 NATVANQPVLFKTMVHFFIPVGFGLLFGLIIAIIVDILYRLTKYAIKRSYQSN 115 Lambda K H a alpha 0.334 0.148 0.459 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7932006 Query= gi|13508125|ref|NP_110074.1| DEOXYGUANOSINE KINASE/ DEOXYADENOSINE KINASE [Mycoplasma pneumoniae M129] Length=229 Score E Sequences producing significant alignments: (Bits) Value gi|12045124|ref|NP_072935.1| hypothetical protein MG268 [Mycoplas... 322 2e-114 >gi|12045124|ref|NP_072935.1| hypothetical protein MG268 [Mycoplasma genitalium G-37] Length=228 Score = 322 bits (824), Expect = 2e-114, Method: Compositional matrix adjust. Identities = 147/224 (66%), Positives = 183/224 (82%), Gaps = 0/224 (0%) Query 6 KPKFQPAKIANAVVVGGMIAFGKTTIAESLAKHLKGSKVIYELEEQDQLADLLLAKMYER 65 KP FQP KIAN +V+GGMIA GKTTIA +LA H++ +KV+ ELE DQL +LLLAKMYER Sbjct 5 KPHFQPNKIANCIVIGGMIALGKTTIANTLANHIQAAKVVCELETNDQLVELLLAKMYER 64 Query 66 NDELLYAPLFQLYFTLNRFNKYRKECNNKTPTIFDRSIFEDWLFAKQNIHRPSIFTYYNH 125 +DELLY+PLFQLYFTLNRF KY+ CN PTIFDRSIFEDWLFAK NI RP++F+YYN Sbjct 65 SDELLYSPLFQLYFTLNRFGKYQNNCNTINPTIFDRSIFEDWLFAKHNIIRPAVFSYYNQ 124 Query 126 LWNGIVKELIFKHGIPALYVILEGDWELFEQRLFQRNRKVEIDNFAKNKDYFKNLYKIYG 185 LWN + KEL+ KHG+P LYVIL+GDW+LFE+RLF RNRKVEIDNF KN+ YF+NL+++Y Sbjct 125 LWNRLAKELVNKHGVPNLYVILDGDWKLFEKRLFMRNRKVEIDNFTKNQLYFQNLHRVYT 184 Query 186 EFIKNVCYDFGISHCIVNANQSVESITKQVLEVLKSKNLDWEII 229 F++ VC DFGI++CI++A + +I K +LE LK + LDW+ I Sbjct 185 GFMEAVCNDFGINYCIIDAKLPIVTIIKMILEKLKLQKLDWKFI 228 Lambda K H a alpha 0.323 0.140 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23247162 Query= gi|13508126|ref|NP_110075.1| hypothetical protein MPN387 [Mycoplasma pneumoniae M129] Length=358 Score E Sequences producing significant alignments: (Bits) Value gi|12045125|ref|NP_072936.1| hypothetical protein MG269 [Mycoplas... 312 3e-107 >gi|12045125|ref|NP_072936.1| hypothetical protein MG269 [Mycoplasma genitalium G-37] Length=340 Score = 312 bits (800), Expect = 3e-107, Method: Compositional matrix adjust. Identities = 177/360 (49%), Positives = 240/360 (67%), Gaps = 22/360 (6%) Query 1 MTNFEYYRDFDDFQRRETINFFLSKFPLASQKQLQDFLEQARQAYVQLRQTNPAHLDWNQ 60 M NF+YYRDFDDFQRRETINFFL+KFP AS+ QL FLEQA+ AYV+LR +NP ++DWNQ Sbjct 1 MNNFDYYRDFDDFQRRETINFFLAKFPFASKAQLDVFLEQAKTAYVKLRTSNPKNVDWNQ 60 Query 61 TLLYLAQKFLPEKQSEKDRLKKILVLQEQLKVRYEGEIKRQSQQNSELLIQLGQRDEEII 120 L+ L +KF PE +SEK+RLK+IL LQEQLKVR EGEI RQ QQNSEL QL Q + EII Sbjct 61 MLVLLLKKFGPEARSEKERLKRILSLQEQLKVRLEGEINRQVQQNSELFSQLKQSESEII 120 Query 121 QMQQLFKEKERQLEVYQKQLNEAKEYNHKL-EEHYNKTLEEALKEYEQQCTDAIHRRDEE 179 QMQQL + KE Q+E KQL+ KE N KL EEH + +EE LKEYE QC +AI++RD+ Sbjct 121 QMQQLVEAKEHQIEALNKQLHAIKEANKKLIEEHESINVEELLKEYEVQCNEAIYKRDQH 180 Query 180 IQAIFTSKLNEKNSEITQLQTYLQSAVDENEALQKQHKLVLFKNQKYEKMVSDLQVDLAR 239 IQ +F KL K+ EI++ Q+ L++A E +AL+K +KLV+ QK++K+ +++++D + Sbjct 181 IQTVFEDKLALKDGEISETQSLLKTAEKEKQALKKAYKLVVNSLQKHQKLTTEIEIDFTK 240 Query 240 IQEINNSLTSEKRDFQRANNDLVKQYNKLKNRLEQKLGEITNAQVNGQTHTVSLADTSQQ 299 + EI ++ E ++ + + +KQ+ K K +L +K+ EIT D S Sbjct 241 LDEIIATIFDETKNPKTGFTNFIKQFEKTKAKLTKKIAEITK------------LDHSTP 288 Query 300 FHRPQEAVIPQTQVISYTLDDMDDDME-VEETPPTTNKDLPRGATQPKRNSIKRVSKLID 358 + QE Q Q +D + E ++ + + + LPRG TQPK NSI RVSKLID Sbjct 289 TNYQQETPASQQQ--------LDQENEPIKPSKKSNSSSLPRGTTQPKSNSINRVSKLID 340 Lambda K H a alpha 0.313 0.128 0.344 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 40629155 Query= gi|13508127|ref|NP_110076.1| hypothetical protein MPN388 [Mycoplasma pneumoniae M129] Length=42 ***** No hits found ***** Lambda K H a alpha 0.331 0.143 0.439 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4372810 Query= gi|13508128|ref|NP_110077.1| lipoate protein ligase [Mycoplasma pneumoniae M129] Length=339 Score E Sequences producing significant alignments: (Bits) Value gi|12045126|ref|NP_072937.1| lipoate protein ligase (lplA) [Mycop... 543 0.0 >gi|12045126|ref|NP_072937.1| lipoate protein ligase (lplA) [Mycoplasma genitalium G-37] Length=336 Score = 543 bits (1398), Expect = 0.0, Method: Compositional matrix adjust. Identities = 255/336 (76%), Positives = 297/336 (88%), Gaps = 0/336 (0%) Query 1 MKTYILTSPKNIPYFNAALEEWLLTEFKKGEEIKVIYFWQNANTIVVGRNQNTYAEVNLS 60 M+T+I+TSP PYFNAALEEWLLTEF+K E +KVIYFWQNANTIVVGRNQNTYAEVNL Sbjct 1 MQTFIITSPVFNPYFNAALEEWLLTEFRKNELVKVIYFWQNANTIVVGRNQNTYAEVNLK 60 Query 61 EVEKDKVNLFRRFSGGGAVFHDMGNICFSIILPKAKKEMENAYEETTRNVVKFLNSVGVP 120 E+E DKVNLFRRFSGGGAVFHD+GNICFSIILP+ K MENAYE+TTRNVVKFLNS+ VP Sbjct 61 ELESDKVNLFRRFSGGGAVFHDLGNICFSIILPRTGKVMENAYEQTTRNVVKFLNSLNVP 120 Query 121 AQFHGRNDLEIEGKKFSGLAEYLSKDRVLVHGTLLFDTDFTKLAKYLNVDKTKMVSKGIE 180 A FHGRNDLEI KKFSGLAEY++KDR+LVHGTLLFDTDF+KLAKYLNVDKTK+ SKG++ Sbjct 121 AVFHGRNDLEINNKKFSGLAEYIAKDRLLVHGTLLFDTDFSKLAKYLNVDKTKIASKGVD 180 Query 181 SVQKRVVNVKEYLPNLSTPTFLEKMVQFFTETEHAETIHLDESSIKMVEKRAQEHFQSWD 240 SV KRVVNVKEYLPN +T FLE+M+ FFT TE AETI L + ++ VEKRA+EHFQSW+ Sbjct 181 SVAKRVVNVKEYLPNWTTAKFLEEMINFFTVTEKAETIVLTKDALAKVEKRAKEHFQSWE 240 Query 241 WNFGKTADYNFKNKKRFEGAGIFECNVQVDQGKVVDIKFYGDFLSVIDITPVTQQLVGQK 300 WNFGKT +YNFKNK+ F AG+FECNVQV++G VVDIKFYGDFLSV+DITPVT++L+GQK Sbjct 241 WNFGKTYEYNFKNKRYFNNAGLFECNVQVEKGTVVDIKFYGDFLSVVDITPVTKKLIGQK 300 Query 301 YDYQTFAKILGNIDNFKEYFGTLTPQQMLEVIFDNK 336 YDY+TF K+ +D+F +YFG+L P+Q+L VIFDNK Sbjct 301 YDYKTFEKLFNELDHFSDYFGSLKPEQLLGVIFDNK 336 Lambda K H a alpha 0.318 0.136 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37939420 Query= gi|13508129|ref|NP_110078.1| dihydrolipoamide dehydrogenase [Mycoplasma pneumoniae M129] Length=457 Score E Sequences producing significant alignments: (Bits) Value gi|12045127|ref|NP_072938.1| dihydrolipoamide dehydrogenase (pdhD... 674 0.0 >gi|12045127|ref|NP_072938.1| dihydrolipoamide dehydrogenase (pdhD) [Mycoplasma genitalium G-37] Length=457 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/456 (73%), Positives = 397/456 (87%), Gaps = 0/456 (0%) Query 1 MNYDLIIIGAGPAGYVAAEYAGKHKLKTLVVEKEYFGGVCLNVGCIPTKTLLKRAKIVDY 60 M+YDLII+GAGPAGY+AAEYAGKHKLKTLV+EK+YFGGVCLNVGCIPTKTLLKRAKI+DY Sbjct 1 MDYDLIILGAGPAGYIAAEYAGKHKLKTLVIEKQYFGGVCLNVGCIPTKTLLKRAKIIDY 60 Query 61 LRHAQDYGISINGQVALNWNQLLEQKGKVVSKLVGGVKAIIASAKAETVMGEAKVLDPNT 120 L HA+DYGI+INGQ L+W QLL+QK +VV KLV GVK II AK E++ GEA V+D N Sbjct 61 LVHAKDYGITINGQAKLDWKQLLKQKQEVVDKLVAGVKTIIKGAKVESIEGEATVIDKNK 120 Query 121 VEVAGKTYTTKSIVVATGSRPRYLTLPGFAEARQNGFVIDSTQALSLEGVPRKLVVVGGG 180 V+V TYTT +I+VATGSRPRYLTLPGF +A+Q GF+IDSTQAL+LEGVP+K VVVGGG Sbjct 121 VQVNNTTYTTNNIIVATGSRPRYLTLPGFEKAQQAGFIIDSTQALALEGVPKKFVVVGGG 180 Query 181 VIGIEFAFLYASLGSEVTILQGVDRILEIFDTEVSDLVAKLLQTKNVKIITNAQVTRANN 240 VIG+EFAFL+ASLGSEVTI+QGVDRILE+ D++VS+L++K L+ K V+IITNA V RA N Sbjct 181 VIGVEFAFLFASLGSEVTIIQGVDRILEVCDSDVSELISKTLKNKGVQIITNAHVVRAEN 240 Query 241 NEVFYSQNGQEGSVVGDRILVSIGRIPNTECLDGLNLQRDERNRIVLNQDLQTSIPNIYI 300 N++FY+ NG E SV+GD+ILVSIGRI NTECLD L+L+RD N+IVLN+ LQTS NIY+ Sbjct 241 NQLFYTVNGVEQSVIGDKILVSIGRIANTECLDQLDLKRDHNNKIVLNEKLQTSTTNIYL 300 Query 301 VGDANAQLMLAHFAYQQGRYAVNHILNKKQVKPAQKLTCPSCIYTNPEVASVGYTEMELK 360 +GD N Q+MLAH+AYQQGRYAV+ ILN+ QVKPA+K CP+CIYTNPEVA VGY+EMEL+ Sbjct 301 IGDVNTQMMLAHYAYQQGRYAVDQILNQNQVKPAEKNKCPACIYTNPEVAFVGYSEMELQ 360 Query 361 KQGIPYVKTNLVLAHCGKAIADNETNGFVKMMFDPQTGKILGCCIIAATASDMIAELALA 420 K+ I YVK++L + GKAIAD+ETNGFVKMMF+P+TG ILG CIIA+TASD+IAELAL Sbjct 361 KEKIDYVKSSLPFIYSGKAIADHETNGFVKMMFNPKTGAILGGCIIASTASDIIAELALV 420 Query 421 MGAGLTVFDIANSISPHPTINEMIADVCKKALFDHF 456 M LTVFDIANSISPHPT+NEM+ DVCKKA+FD+F Sbjct 421 MENNLTVFDIANSISPHPTMNEMVTDVCKKAIFDYF 456 Lambda K H a alpha 0.319 0.136 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 53989248 Query= gi|13508130|ref|NP_110079.1| dihydrolipoamide acetyltransferase component (E2) [Mycoplasma pneumoniae M129] Length=402 Score E Sequences producing significant alignments: (Bits) Value gi|12045128|ref|NP_072939.1| dihydrolipoamide acetyltransferase (... 563 0.0 >gi|12045128|ref|NP_072939.1| dihydrolipoamide acetyltransferase (pdhC) [Mycoplasma genitalium G-37] Length=384 Score = 563 bits (1452), Expect = 0.0, Method: Compositional matrix adjust. Identities = 290/406 (71%), Positives = 325/406 (80%), Gaps = 26/406 (6%) Query 1 MANEFKFTDVGEGLHEGKVTEILKKVGDTIKVDEALFVVETDKVTTELPSPYAGVITAIT 60 MANEFKFTDVGEGLHEGKVTEILK+VGD IK+DEALFVVETDKVTTELPSP+AG I+AI Sbjct 1 MANEFKFTDVGEGLHEGKVTEILKQVGDQIKIDEALFVVETDKVTTELPSPFAGTISAIN 60 Query 61 TNVGDVVHIGQVMAVIDDGAGAAAPAAPQPVSAPAPAPTPTFTPTPAPVTTEPVVEEAGA 120 VGDVV IGQVMAVI + TP P P P V+EAGA Sbjct 61 VKVGDVVSIGQVMAVIGE-----------------KTSTPLVEPKPQPTEEVAKVKEAGA 103 Query 121 SVVGEIKVSNSVFPIFGVQPSAPQPTPAPVVQPTSAPTPTPAPASAA----APSGEETIA 176 SVVGEIKVS+++FPIFGV+P A P V+ T + T + + ++TIA Sbjct 104 SVVGEIKVSDNLFPIFGVKPHA-----TPAVKDTKVASSTNITVETTQKPESKTEQKTIA 158 Query 177 ITTMRKAIAEAMVKSHENIPATILTFYVNATKLKQYRESVNGLALSKYNMKISFFAFFVK 236 I+TMRKAIAEAM KSH IP T+LTFYVNATKLKQYRESVNG ALSKY+MKIS+FAFFVK Sbjct 159 ISTMRKAIAEAMTKSHAIIPTTVLTFYVNATKLKQYRESVNGYALSKYSMKISYFAFFVK 218 Query 237 AIVNALKKFPVFNGRYDKERNLIVLNKDVNVGIAVDTPDGLIVPNIKQAQTKSVVDIAKD 296 AIVNALKKFPVFN YD ++N IVLN D+NVGIAVDT +GLIVPNIKQAQTKSVV+IA+ Sbjct 219 AIVNALKKFPVFNASYDPDQNEIVLNDDINVGIAVDTEEGLIVPNIKQAQTKSVVEIAQA 278 Query 297 IVDLANRARSKQIKLPDLSKGTISVTNFGSLGAAFGTPIIKHPEMCIVATGNMEERVVRA 356 IVDLAN+AR+K+IKL DL+KGTISVTNFGSLGAA GTPIIK+PEMCIVATGN+EER+V+ Sbjct 279 IVDLANKARTKKIKLTDLNKGTISVTNFGSLGAAVGTPIIKYPEMCIVATGNLEERIVKV 338 Query 357 EGGVAVHTILPLTIAADHRWVDGADVGRFGKEIAKQIEELIDLEVA 402 E G+AVHTILPLTIAADHRWVDGADVGRFGKEIAKQIEELIDL VA Sbjct 339 ENGIAVHTILPLTIAADHRWVDGADVGRFGKEIAKQIEELIDLTVA 384 Lambda K H a alpha 0.315 0.132 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 46556730 Query= gi|13508131|ref|NP_110080.1| pyruvate dehydrogenase E1-beta subunit [Mycoplasma pneumoniae M129] Length=327 Score E Sequences producing significant alignments: (Bits) Value gi|12045129|ref|NP_072940.1| pyruvate dehydrogenase component E1,... 586 0.0 >gi|12045129|ref|NP_072940.1| pyruvate dehydrogenase component E1, subunit beta (pdhB) [Mycoplasma genitalium G-37] Length=326 Score = 586 bits (1510), Expect = 0.0, Method: Compositional matrix adjust. Identities = 291/327 (89%), Positives = 310/327 (95%), Gaps = 1/327 (0%) Query 1 MSKTIQANNIEALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCP 60 MSK IQ NNIEAL NAMDLALERD NVVLYGQDAGFEGGVFRATKGLQ+KYG ERVWDCP Sbjct 1 MSK-IQVNNIEALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCP 59 Query 61 IAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCPIIVRM 120 IAE +MAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIF HAARIRNRSRGVYT P++VRM Sbjct 60 IAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPLVVRM 119 Query 121 PMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLY 180 PMGGGIKALEHHSETLEAIY QIAGLKTVMPSNPYDTKGLFLAA+ESPDPV+FFEPKKLY Sbjct 120 PMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLY 179 Query 181 RAFRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGIELIDLR 240 RAFRQEIP+DYYTVPIG+ANLIS+G+ LTIVSYGPTMFDLIN+VY GELKDKGIELIDLR Sbjct 180 RAFRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGIELIDLR 239 Query 241 TISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDI 300 TISPWDK+TVFNSVKKTGRLLVVTEA K+FTTS EII SVTEELF+YLK APQRVTG+DI Sbjct 240 TISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDI 299 Query 301 VVPLARGEHYQFNLNARILEAVNQLLK 327 VVPLARGE YQF +NAR+++AVNQLLK Sbjct 300 VVPLARGEKYQFEINARVIDAVNQLLK 326 Lambda K H a alpha 0.320 0.138 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36240640 Query= gi|13508132|ref|NP_110081.1| Pyruvate dehydrogenase [Mycoplasma pneumoniae M129] Length=358 Score E Sequences producing significant alignments: (Bits) Value gi|12045130|ref|NP_072941.1| pyruvate dehydrogenase component E1,... 672 0.0 >gi|12045130|ref|NP_072941.1| pyruvate dehydrogenase component E1, subunit alpha (pdhA) [Mycoplasma genitalium G-37] Length=358 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/358 (88%), Positives = 336/358 (94%), Gaps = 0/358 (0%) Query 1 MAILIKNKVPTTLYQVYDNEGKLMDPNHKITLSNEQLKHAFYLMNLSRIMDKKMLVWQRA 60 MAILIKNKVPTTLYQVYDNEGKL+DPNHKITL++EQLKHA+YLMNLSR+MDKKMLVWQRA Sbjct 1 MAILIKNKVPTTLYQVYDNEGKLIDPNHKITLTDEQLKHAYYLMNLSRMMDKKMLVWQRA 60 Query 61 GKMLNFAPNLGEEALQVGMGMGLNENDWFCPTFRSGALMLYRGVKPEQLLLYWNGNENGS 120 GKMLNFAPNLGEEALQVGMG+GLNENDW CPTFRSGALMLYRGVKPEQLLLYWNGNE GS Sbjct 61 GKMLNFAPNLGEEALQVGMGLGLNENDWVCPTFRSGALMLYRGVKPEQLLLYWNGNEKGS 120 Query 121 KIEAKYKTLPINITIGAQYSHAAGLGYMLHYKKLPNVAVTMIGDGGTAEGEFYEAMNIAS 180 +I+AKYKTLPINITIGAQYSHAAGLGYMLHYKK PNVAVTMIGDGGTAEGEFYEAMNIAS Sbjct 121 QIDAKYKTLPINITIGAQYSHAAGLGYMLHYKKQPNVAVTMIGDGGTAEGEFYEAMNIAS 180 Query 181 IHKWNSVFCINNNQFAISTRTKLESAVSDLSTKAIAVNIPRIRVDGNDLIASYEAMHEAA 240 IHKWN+VFCINNNQFAISTRTKLESAVSDLS KAIA IPR+RVDGNDLIASYEAM +AA Sbjct 181 IHKWNTVFCINNNQFAISTRTKLESAVSDLSVKAIACGIPRVRVDGNDLIASYEAMQDAA 240 Query 241 NYARSGNGPVLIEFFSWRQGPHTTSDDPSIYRTKEEEAEAMKSDPVKRLRNFLFDRGILT 300 NYAR GNGPVLIEFFS+RQGPHTTSDDPSIYRTK+EE E MKSDPVKRLRNFLFDR IL Sbjct 241 NYARGGNGPVLIEFFSYRQGPHTTSDDPSIYRTKQEEEEGMKSDPVKRLRNFLFDRSILN 300 Query 301 PQQEEEMVAKIEQEVQAAYEVMVSKTPVTLDEVFDYNYEKLTPDLARQKAEAKKYFKD 358 QEEEM +KIEQE+QAAYE MV TPV++DEVFDYNY++LTP+L QK AKKYFKD Sbjct 301 QAQEEEMFSKIEQEIQAAYEKMVLDTPVSVDEVFDYNYQELTPELVEQKQIAKKYFKD 358 Lambda K H a alpha 0.317 0.133 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 40629155 Query= gi|13508133|ref|NP_110082.1| NADH oxidase [Mycoplasma pneumoniae M129] Length=479 Score E Sequences producing significant alignments: (Bits) Value gi|12045131|ref|NP_072942.1| NADH oxidase (nox) [Mycoplasma genit... 838 0.0 >gi|12045131|ref|NP_072942.1| NADH oxidase (nox) [Mycoplasma genitalium G-37] Length=478 Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/477 (83%), Positives = 441/477 (92%), Gaps = 0/477 (0%) Query 1 MKKVIVIGVNHAGTSFIRTLLSKSKDFQVNAYDRNTNISFLGCGIALAVSGVVKNTEDLF 60 MKKVIVIG+NHAGTSFIRTLLSKSKDF+VNAYDRNTNISFLGCGIALAVSGVVKNT+DLF Sbjct 1 MKKVIVIGINHAGTSFIRTLLSKSKDFKVNAYDRNTNISFLGCGIALAVSGVVKNTDDLF 60 Query 61 YSTPEELKAMGANVFMAHDVVGLDLDKKQVIVKDLATGKETVDHYDQLVVASGAWPICMN 120 YS PEELK MGAN+FM+HDV +DL KKQV V+DL + KE D +DQLV+ASGAWPICMN Sbjct 61 YSNPEELKQMGANIFMSHDVTNIDLIKKQVTVRDLTSNKEFTDQFDQLVIASGAWPICMN 120 Query 121 VENEVTHTQLQFNHTDKYCGNIKNLISCKLYQHALTLIDSFRHDKSIKSVAIVGSGYIGL 180 VEN+VTH L+FN+TDKYCGN+KNLISCKLYQHALTLIDSFR DK+IKSVAIVGSGYIGL Sbjct 121 VENKVTHKPLEFNYTDKYCGNVKNLISCKLYQHALTLIDSFRKDKTIKSVAIVGSGYIGL 180 Query 181 ELAEAAWQCGKQVTVIDMLDKPAGNNFDEEFTNELEKAMKKAGINLMMGSAVKGFIVDAD 240 ELAEAAW C KQVTVID+LDKPAGNNFD EFT+ELEK M+K G+ LMMG +VKGF+VD+ Sbjct 181 ELAEAAWLCKKQVTVIDLLDKPAGNNFDHEFTDELEKVMQKDGLKLMMGCSVKGFVVDST 240 Query 241 KNVVKGVETDKGRVDADLVIQSIGFRPNTQFVPKDRQFEFNRNGSIKVNEYLQALNHENV 300 NVVKGVETDKG V+ADLV QSIGFRP+T+FVPKD+ FEF NGSIKVNE+LQALNH++V Sbjct 241 NNVVKGVETDKGIVNADLVNQSIGFRPSTKFVPKDQNFEFIHNGSIKVNEFLQALNHKDV 300 Query 301 YVIGGAAAIYDAASEQYENIDLATNAVKSGLVAAMHMIGSKAVKLESIVGTNALHVFGLN 360 YVIGG AAIY+AASEQYENIDLATNAVKSGLVAAMH+IGS VKL+SIVGTNALH+FGLN Sbjct 301 YVIGGCAAIYNAASEQYENIDLATNAVKSGLVAAMHIIGSNQVKLQSIVGTNALHIFGLN 360 Query 361 LAATGLTEKRAKMNGFDVGVSIVDDNDRPEFMGTFDKVRFKLIYDKKTLRLLGAQLLSWN 420 LAA GLTE+RAK GFDVG+S+VDDNDRPEFMG++DKVRFKL+YDKKTLR+LGAQLLSWN Sbjct 361 LAACGLTEQRAKKLGFDVGISVVDDNDRPEFMGSYDKVRFKLVYDKKTLRILGAQLLSWN 420 Query 421 TNHSEIIFYIALAVQKKMLISELGLVDVYFLPHYNKPFNFVLAAVLQALGFSYYTPK 477 TNHSEIIFYIALA+QK+ML++ELGLVDVYFLPHYNKPFNFVLA VLQALGFSYY PK Sbjct 421 TNHSEIIFYIALAIQKQMLLTELGLVDVYFLPHYNKPFNFVLATVLQALGFSYYIPK 477 Lambda K H a alpha 0.319 0.135 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56745765 Query= gi|13508134|ref|NP_110083.1| adenine phosphoribosyltransferase [Mycoplasma pneumoniae M129] Length=177 Score E Sequences producing significant alignments: (Bits) Value gi|12045132|ref|NP_072943.1| adenine phosphoribosyltransferase [M... 258 7e-91 >gi|12045132|ref|NP_072943.1| adenine phosphoribosyltransferase [Mycoplasma genitalium G-37] Length=180 Score = 258 bits (658), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 123/180 (68%), Positives = 148/180 (82%), Gaps = 3/180 (2%) Query 1 MKQKLQALDRAIKRFNDFPTPGILFYDITPIFLNSELFEFVLEQMAQFIQEVKADGIVCP 60 M Q + LD+AIKRF +FP G LFYDITP+F N +LF FVL QMAQFI+ + A+ IVCP Sbjct 1 MDQNFKLLDQAIKRFENFPNQGTLFYDITPVFSNPQLFNFVLTQMAQFIKAINAEAIVCP 60 Query 61 EARGFIFGGALASKTKLPLVLVRKPHKLSGELARETYDLEYRQNSILEMRVDAL---ENC 117 EARGFIFGGALASKT+LPLVLVRK +KL G+L +YDLEYR++++LEM +L N Sbjct 61 EARGFIFGGALASKTQLPLVLVRKANKLPGQLISASYDLEYRKHAVLEMSTTSLIQANNA 120 Query 118 KRCVIVDDLLATAGTVAAIDKLIARLGSQTVGYCFLIELQKLHGKAKLQPNVATKILLHY 177 KRCVIVDD+LATAGTVAAID+L+ +L +TVGYCFLIEL+KL+GKAKLQPNV +KILLHY Sbjct 121 KRCVIVDDVLATAGTVAAIDQLLKQLNGETVGYCFLIELKKLNGKAKLQPNVVSKILLHY 180 Lambda K H a alpha 0.325 0.141 0.407 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 16180528 Query= gi|13508135|ref|NP_110084.1| protein export, secD like [Mycoplasma pneumoniae M129] Length=971 Score E Sequences producing significant alignments: (Bits) Value gi|12045133|ref|NP_072944.1| hypothetical protein MG277 [Mycoplas... 1377 0.0 >gi|12045133|ref|NP_072944.1| hypothetical protein MG277 [Mycoplasma genitalium G-37] Length=970 Score = 1377 bits (3563), Expect = 0.0, Method: Compositional matrix adjust. Identities = 679/979 (69%), Positives = 811/979 (83%), Gaps = 17/979 (2%) Query 1 MGLKKRVSFDWLLKIGIILVLAFLGLFGIIFGSYKLLNDSRLGVVFNGSTTTTVYFLNHK 60 M KKR S DW+LKIG IL L LGLFG+IFGSYKLLNDSRLG VFNGSTTTTVYFLNHK Sbjct 1 MRFKKRFSLDWILKIGTILGLVCLGLFGVIFGSYKLLNDSRLGAVFNGSTTTTVYFLNHK 60 Query 61 SKDANKELDPTQKKDGNGSGNNTEMITDVNGFLNNIEKSYANSLYAQGFSSVNITKNSHD 120 S + N LDP Q K NG E IT+++ FL+ +EKSYANSL+ QGFSSVNITKN++D Sbjct 61 STN-NTSLDPQQTKPTNG----IENITNIDSFLDGVEKSYANSLFIQGFSSVNITKNTND 115 Query 121 TSAKELSDKGVFDSSWLVNDGLPSISVTFEQRREEARTRARKRQIDAQVKRNALSAIEHN 180 +A EL + D SWLVN GLPS+++TFEQ RE+A+TR RKRQ+DAQV+RNA+S++EHN Sbjct 116 KTASELDN---IDKSWLVNGGLPSVTLTFEQNREQAKTRQRKRQVDAQVRRNAISSVEHN 172 Query 181 YKLSLETTDGIVLFDSFDKEFIRNSLTAVVPQTTNTNSALTFEYKLSKNVITKESLHNDF 240 Y+LSLETTDG+VLFDS D FI S+ AVVPQ T+ NSALTFEYKL+KNV+TKESLH DF Sbjct 173 YQLSLETTDGVVLFDSLDNNFINASIRAVVPQNTSVNSALTFEYKLNKNVVTKESLHTDF 232 Query 241 LDFIKSKSLTDSDYNTGNGQKSVEGSGKWFKDKANGSAQNGNKTLVLWKDKEGAVQYVRN 300 LDFI SK+L+ SDYNTGNGQ SVEG+GK+FK ANG++ +GNKTLVLWKDK+GA+ YVRN Sbjct 233 LDFINSKNLSSSDYNTGNGQASVEGNGKFFKQNANGTSSSGNKTLVLWKDKQGALNYVRN 292 Query 301 IFNVPKGGTDYLTFNEREKNLWDFLHAEGNFSSGDNLFLQKNNNGNSPITKASDITLKNI 360 IFNV +G +DYLTFNEREK+LW+FLHA+G+F+SGDNLFL + NG SPI KASDITLKN+ Sbjct 293 IFNVVEGSSDYLTFNEREKSLWEFLHAKGSFASGDNLFLNTDANGASPIKKASDITLKNL 352 Query 361 YYIYAAPTHFSQVATKDNNNKDAAD--------VVAVANSADTRKLRSGDATGFSGLFSN 412 YYIYAAP HFS VA+ N+N + + V+ V+NSADTRKLRS D++GFSGLF N Sbjct 353 YYIYAAPNHFSAVASNSNDNNNQNNNNNNNSSDVITVSNSADTRKLRSADSSGFSGLFHN 412 Query 413 YILAEIRTEDPVAKNGDPVKVNATLQSFLDSNNQRLEHGGNIKFQVANFVNNDGSYVPAS 472 YI++EIRTEDPV+K GDPVK+N TLQSFLD+NNQR+E+GGNIKFQV NF+++DG+Y P + Sbjct 413 YIISEIRTEDPVSKTGDPVKINPTLQSFLDTNNQRIEYGGNIKFQVGNFLSSDGTYTPPN 472 Query 473 YLEASRVKVLLSNGFPETATIAAANTKLVNAPLSNTLARDVSNFASSFIALGVIILLATI 532 ++ A+ VK LL+N FP ATIA A T LVNAPL+NT+ DVSNFASSFIA G+I+L+A + Sbjct 473 FVTAATVKELLTNPFPTAATIATAKTSLVNAPLANTIT-DVSNFASSFIAFGIIVLIAAV 531 Query 533 ALGIRYKLLGLYKALALALSAISSLAFFSAVGGVVDVFSFVGIFFVVAVNIINLITLAEL 592 L +RYKLLGLYKALAL LS +SSL FSAVGGVVDVFSFVGIFFV+A+N+INL+ L EL Sbjct 532 LLTLRYKLLGLYKALALGLSVVSSLVIFSAVGGVVDVFSFVGIFFVIAINLINLLNLGEL 591 Query 593 FLRNIKNNASIVESWKLCLKRSFFTMIETHICWLLSALVVIYLSNYQVQQLGTLMAVSAI 652 FLRNI+NNASI+ESWKLCLKRSFF +E HI WL+SALVVIYLSNYQVQQL LMA+SAI Sbjct 592 FLRNIRNNASIIESWKLCLKRSFFANLEFHITWLISALVVIYLSNYQVQQLANLMAISAI 651 Query 653 TSYFLNYGLGVILVWLFVSSHSGLEWRFFLYKKDAQALTKTSSNYSILTENNDIQTDFFI 712 TSYF +YG+ ++L+ LFVSS SG W+ FLY+KDA+ALTKTSSNYS+L+ +D+ TDFFI Sbjct 652 TSYFFSYGISIVLISLFVSSESGANWKLFLYQKDAKALTKTSSNYSLLSSTSDLNTDFFI 711 Query 713 SKNQHDFFGKKKWSLLFIWLTVLAFGVVMLGLYLGAPQLLGNFLAADIESSTGIMLGVGV 772 +KNQHDFF K W LF+WL +LA GVVML LYL P LLG FLAAD+ESS GI+ G+G+ Sbjct 712 TKNQHDFFLKNNWKFLFVWLILLAIGVVMLVLYLVQPNLLGEFLAADVESSNGIIAGIGI 771 Query 773 ISLLYLLYSLPRYGVAYGISYLIALILLAAGLFGAMYLANFIFRIDQSTIQLIIFVYLFW 832 +SLLYL Y L RYGVAY +SYL++ ILL +GLF MYL N++F IDQSTIQLI FVYLFW Sbjct 772 VSLLYLAYCLIRYGVAYCLSYLVSFILLCSGLFAVMYLTNYLFSIDQSTIQLITFVYLFW 831 Query 833 LFFQARIGQTTIWTYCYWFKRSLKDRVFVKNLFNDNVNSQWRLDLIGSSVLILLFIVYAA 892 LFF A++ QTT WTY YWFKRSLKD+VF+KNLFNDN NSQW++DLI SS L+ +FI+Y+ Sbjct 832 LFFAAKVSQTTTWTYFYWFKRSLKDKVFIKNLFNDNFNSQWKIDLIESSSLVFIFIIYSG 891 Query 893 FNFGGINGTINLVIFYLIAIVALFSVFVNGLPLFSFGLINGWLSPYNYVQIHITLRHKKQ 952 FNFGGI+G NLVIFYLIAIV LF V LP+F FGLINGWLSP+NYV ++L+HKK Sbjct 892 FNFGGIDGNFNLVIFYLIAIVGLFDVATAFLPMFCFGLINGWLSPFNYVHSRLSLKHKKH 951 Query 953 MFKEVDQIEEQLISGINSF 971 FKE+DQIEEQLI+GINSF Sbjct 952 PFKEIDQIEEQLIAGINSF 970 Lambda K H a alpha 0.322 0.137 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 122822156 Query= gi|13508136|ref|NP_110085.1| p)ppGpp 3'-pyrophosphohydrolase [Mycoplasma pneumoniae M129] Length=733 Score E Sequences producing significant alignments: (Bits) Value gi|12045134|ref|NP_072945.1| guanosine-3',5'-bis(diphosphate) 3'-... 1095 0.0 >gi|12045134|ref|NP_072945.1| guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase (spoT) [Mycoplasma genitalium G-37] Length=720 Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/720 (73%), Positives = 617/720 (86%), Gaps = 0/720 (0%) Query 14 MATLVEIERDFLQKTAQKFAPEVVALITKALDYSKKWHGEQKRLSGEPFFIHPLRTALRL 73 MAT+ EIE DFL K AQKF + LI KA ++K WH QKRLSGEPFFIHPLRTAL L Sbjct 1 MATIQEIECDFLAKIAQKFTNAEIELINKAFYHAKTWHENQKRLSGEPFFIHPLRTALSL 60 Query 74 VEWNMDSNTVCAGLLHDIIEDTQVTEADLTAIFGKEITDLVVKVTKITSESKKQRQLNRK 133 VEWNMD T+CAGLLHDIIEDT TEA++ IF KEI +LV KVTKIT+ESKKQR L K Sbjct 61 VEWNMDPITICAGLLHDIIEDTDQTEANIAMIFSKEIAELVTKVTKITNESKKQRHLKNK 120 Query 134 KEDLNLKSLVNIAMSSQQEVNALVLKLADRLDNISSIEFLAVEKQKIIAKETLELYAKIA 193 KE+LNLKS VNIA++SQQE+N +VLKLADRLDNI+SIEFL +EKQK+IAKETLELYAKIA Sbjct 121 KENLNLKSFVNIAINSQQEINVMVLKLADRLDNIASIEFLPIEKQKVIAKETLELYAKIA 180 Query 194 GRIGMYPVKTQLADLSFKVLDPKNFNNTLSKINQQKVFYDNEWGNFKKQLEEMLEQNQIE 253 GRIGMYPVKT+LADLSFKVLD KN++NTLSKIN+QKVFYDNEW NFK+QL+++L QNQIE Sbjct 181 GRIGMYPVKTKLADLSFKVLDLKNYDNTLSKINKQKVFYDNEWDNFKQQLKKILAQNQIE 240 Query 254 YRLESRIKGIYSTYQKLTFHEQNIAKIHDLFAIRLIVKSELDCYHLLGLIHLNFTVLMKH 313 Y+LESRIKGIYSTY+KLT HEQNI+KIHDLFAIRLI KSELDCYH+LGLIHLNF + K+ Sbjct 241 YQLESRIKGIYSTYKKLTVHEQNISKIHDLFAIRLITKSELDCYHILGLIHLNFLIDSKY 300 Query 314 FKDYIASPKQNFYQSIHTTVRLKGLNVEIQIRTQRMDHVSKYGFASHWIYKEKKEGLLAS 373 FKDYIASPKQN YQSIHTTVRLKGLNVEIQIRTQ+MD+VSK+G ASHWIYKE+KEGLLA Sbjct 301 FKDYIASPKQNLYQSIHTTVRLKGLNVEIQIRTQQMDNVSKFGLASHWIYKEQKEGLLAP 360 Query 374 ALQVNYLNSKQMHSRDFFKRIFGTDIIKVNVSSDNEPNIVKKLNVESNSKLLDIAYELYP 433 ALQ+NYL +KQ HS DF KRIFGTDIIK+NVS+ +EPN++K++NV+SN+KLLDIA+E YP Sbjct 361 ALQLNYLVTKQKHSHDFLKRIFGTDIIKINVSASHEPNVIKQINVDSNNKLLDIAFENYP 420 Query 434 KQFNKLEKIKLDGVEVMSFDVTAENEMVIEFCFGKTNNLKRRWLRYMNNHVFRERVKKDL 493 KQF KL KI++DGVE+ SFD + ENEM+IEF FGK NNLK +W+RYMNN ++RE+VKK L Sbjct 421 KQFAKLTKIEIDGVEINSFDTSVENEMLIEFYFGKNNNLKSKWIRYMNNPIYREKVKKSL 480 Query 494 NKLKKAVKYSELPLYEKALEELHLKLADETQIKQRLNALGIKKLTEFLELIEYPHFPKNE 553 KL K+ +YSEL YEK L E LKLA ET+I++RLN L IKK++++L LIE +F +E Sbjct 481 AKLAKSGRYSELAFYEKELGEKQLKLASETEIQKRLNTLRIKKMSDYLALIECTNFTNDE 540 Query 554 HLYFLASNNQKWRELIKPIKFALSQAVFQNSYFEQIEGIYITKIVIETCCTKIPDMPEQV 613 HL FLA NN KW +L KP+KFA S+ VF NSYFEQIEGI+ITKIVIE CC+KIPDMPEQV Sbjct 541 HLLFLAKNNDKWNKLTKPLKFAFSKVVFHNSYFEQIEGIFITKIVIEPCCSKIPDMPEQV 600 Query 614 IGILMKNILRVHLHDCRELANQKQPKIIPLYWNAHQLKMRPRKFRCQINIRGVWSETTVN 673 GIL KNIL VH + C+ L N+KQ KIIPLYWN QLK++PRKFR INI GVWSE T+N Sbjct 601 TGILTKNILSVHRYGCKNLQNKKQLKIIPLYWNIQQLKLKPRKFRSYININGVWSEKTIN 660 Query 674 KIVQTIIEGDSYLERIIPKIDKQKDEFELNITMFIDNYHQLITIMEQITTKNISYVWKYL 733 KI QTII GD Y+E+IIPKI+KQKDEF+LNIT+F++NY QL+T+M+QITTKNIS+ WKYL Sbjct 661 KICQTIINGDGYIEKIIPKINKQKDEFDLNITLFVNNYQQLLTLMDQITTKNISFSWKYL 720 Lambda K H a alpha 0.321 0.136 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 90961616 Query= gi|13508137|ref|NP_110086.1| hypothetical protein MPN398 [Mycoplasma pneumoniae M129] Length=218 Score E Sequences producing significant alignments: (Bits) Value gi|12045135|ref|NP_072946.1| hypothetical protein MG279 [Mycoplas... 229 3e-78 >gi|12045135|ref|NP_072946.1| hypothetical protein MG279 [Mycoplasma genitalium G-37] Length=218 Score = 229 bits (583), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 129/217 (59%), Positives = 170/217 (78%), Gaps = 2/217 (1%) Query 1 MFKFLKKLSTFLIVLIGILLVGGITAAGYFAFENREPINNYYKEGYNKVKQYNEEIKKVS 60 M + LKKL+ FLI+L+GILL+GGI AGYFAF REPINNYYKEGYNK+ +YN EIKK+S Sbjct 1 MIRLLKKLAVFLIILVGILLLGGIATAGYFAFTYREPINNYYKEGYNKISEYNTEIKKIS 60 Query 61 KSLSSNELVKTLGDVESSIKEGKELTKLLG-DSALESSFNQLEDSLSKVNNFSKGSTFTE 119 +++ N LVKTL +VE S+ EG++LT+ S L+SS N LE SL K+NNF + FT+ Sbjct 61 QNIFQNNLVKTLSEVEKSLNEGRKLTQNNSFASGLDSSLNALEGSLKKINNFDSNAAFTQ 120 Query 120 VKNTIEKINQYVDEILKRFPNPNENDQFKEYVTNISQIVFYVGVSIIGTFVVSGALLFIF 179 +K+T+ I +VD++L++FPNPN+ND FK Y+T +SQI+FY G+SIIG F VSG LL +F Sbjct 121 IKHTLNNITSFVDQMLEKFPNPNQNDDFKRYLTEVSQILFYTGISIIGAFFVSGFLLILF 180 Query 180 TKRVYGVRVSRFNPQRLLKKHLVLLLQKNQDVYDEVF 216 TK+VYGVRVSRFNPQR L K ++LL ++++VYD VF Sbjct 181 TKKVYGVRVSRFNPQR-LLKKHLVLLLRDEEVYDAVF 216 Lambda K H a alpha 0.317 0.136 0.367 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21668651 Query= gi|13508138|ref|NP_110087.1| hypothetical protein MPN399 [Mycoplasma pneumoniae M129] Length=287 Score E Sequences producing significant alignments: (Bits) Value gi|12045136|ref|NP_072947.1| hypothetical protein MG280 [Mycoplas... 227 4e-76 >gi|12045136|ref|NP_072947.1| hypothetical protein MG280 [Mycoplasma genitalium G-37] Length=248 Score = 227 bits (579), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 119/270 (44%), Positives = 172/270 (64%), Gaps = 23/270 (9%) Query 18 MLVFLVLLGLGGAALYFKDNAAKLYIDTRKSIDSSFDSSQAFIDTYNGSSSKFSVESINK 77 MLVF+ LLG G ALYF+ AA LY+ R SIDSSF+S++AF + S+++FS SI Sbjct 1 MLVFVFLLGFGITALYFRSTAANLYVQARNSIDSSFNSAKAFANALANSANQFSKSSITN 60 Query 78 QIEEVKKKVEESTKKLEEYEKQINQAKGLNGYLVSPEKLKELQEAKKSLQATKSQIEKYA 137 +++VKK +E+S +K++EY+K + L +S EK++EL KK L+ +K+Q++ + Sbjct 61 NLDQVKKDLEQSLQKVDEYKKNLESQNNLGN--ISQEKIRELDATKKDLENSKTQLDNFK 118 Query 138 NTLKTANNGKTGQNGTSSSTIPITKISGSTISVSTRDTNGKTNSALKDIQEFSTQANDII 197 N L +NGT+SS+ + K + + + EFSTQA I+ Sbjct 119 NNL--------DKNGTASSSPSVKK-------------QATADGVISAVSEFSTQAQSIV 157 Query 198 KQYKEIKNKIPTEKQFNEYYTIGAITLVSVSGGVLAVLIVSTVMTFLGSKKLGLRTFSRL 257 Y++IKN IP+ +QFN YY + IT+V+VSGG+LA+LI + V +FL SKK GL FSR Sbjct 158 SSYEKIKNNIPSSEQFNNYYDVTMITIVAVSGGMLAILITTIVFSFLTSKKRGLIRFSRF 217 Query 258 TSTDQIADHVNDILDRYPELEDAVLEELDQ 287 ST+Q+ADHVNDILDRYP+LE+ V+ LD Sbjct 218 ISTEQLADHVNDILDRYPDLEEEVITALDH 247 Lambda K H a alpha 0.311 0.129 0.335 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31072194 Query= gi|13508139|ref|NP_110088.1| hypothetical protein MPN400 [Mycoplasma pneumoniae M129] Length=582 Score E Sequences producing significant alignments: (Bits) Value gi|12045137|ref|NP_072948.1| hypothetical protein MG281 [Mycoplas... 604 0.0 >gi|12045137|ref|NP_072948.1| hypothetical protein MG281 [Mycoplasma genitalium G-37] Length=556 Score = 604 bits (1557), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/571 (56%), Positives = 402/571 (70%), Gaps = 30/571 (5%) Query 5 FKIKDKKTLKRLKKGGFWALGLFGA-AINAFSAVLIVNEVLRLQSGETLIASGRSGNLSF 63 + K K + K+ FW +G+ GA A+ FSAV+I N L QSG L+ASGRSGNL F Sbjct 1 MQFKKHKNSVKFKRKLFWTIGVLGAGALTTFSAVMITN--LVNQSGYALVASGRSGNLGF 58 Query 64 QLYSKVNQNAKSKLNSISLTDGGYRSEIDLGDGSNFREDFRNFANNLSEAITDAPKDLLR 123 +L+S + +A+ KL S+SL DG Y+SEIDL G+NFRE FRNFAN LSEAIT++PK L R Sbjct 59 KLFSTQSPSAEVKLKSLSLNDGSYQSEIDLSGGANFREKFRNFANELSEAITNSPKGLDR 118 Query 124 PVPKVEVSGLIKTSSTFITPNFKAGYYDQVAADGKTLKYYQSTEYFNNRVVMPILQTTNG 183 PVPK E+SGLIKT FITP+FKAGYYD VA+DG L YYQSTEYFNNRV+MPILQTTNG Sbjct 119 PVPKTEISGLIKTGDNFITPSFKAGYYDHVASDGSLLSYYQSTEYFNNRVLMPILQTTNG 178 Query 184 TLTANNRAYDDIFVDQGVPKFPGWFHDVDKAYYAGSNGQSEYLFKEWNYYVANGSPLYNV 243 TL ANNR YDD+F + VP F GW + + SN + + +W Y+ A GSPLY+ Sbjct 179 TLMANNRGYDDVF--RQVPSFSGW-SNTKATTVSTSNNLT---YDKWTYFAAKGSPLYDS 232 Query 244 YPNHHFKQIKTIAFDAPRIKQGNTDGINLNLKQRNPDYVIINGLTGDGSTLKDLELPESV 303 YPNH F+ +KT+A DA I + + P Y+II GL+G+GS L +L+LPESV Sbjct 233 YPNHFFEDVKTLAIDAKDI-----SALKTTIDSEKPTYLIIRGLSGNGSQLNELQLPESV 287 Query 304 KKVSIYGDYHSINVAKQIFKNVLELEFYSTNQDNNFGFNPLVLGDHTNIIYDLFASKPFN 363 KKVS+YGDY +NVAKQIF NV+ELEFYST++ N+FGFNPLVLG TN+IYDLFASKPF Sbjct 288 KKVSLYGDYTGVNVAKQIFANVVELEFYSTSKANSFGFNPLVLGSKTNVIYDLFASKPFT 347 Query 364 YIDLTSLELKDNQDN--IDASKLKRAVSDIYIRRRFERQMQGYWAGGYIDRYLVKNTNEK 421 +IDLT + L+ N DN IDA+KLK+AV DIY RRFERQ QGY+AGGYID+YLVKN N Sbjct 348 HIDLTQVTLQ-NSDNSAIDANKLKQAVGDIYNYRRFERQFQGYFAGGYIDKYLVKNVN-T 405 Query 422 NVNKDNDTVYAALKDINLHLEETYTHGGNTMYRVNENYYPGASAYEAERATRDSEFQKEI 481 N + D+D VY +LK++NLHLEE Y G NT YRVNENYYPGAS YE ERA+RDSEFQ EI Sbjct 406 NKDSDDDLVYRSLKELNLHLEEAYREGDNTYYRVNENYYPGASIYENERASRDSEFQNEI 465 Query 482 VQRAELIGVVFEYGVKNLRPGLKYTVKFESPQEQVALKSTDKFQPVIGSVTDMSKSVTDL 541 ++RAE GV F+ +K + KY+V+F+ + TD S+ M+K+V L Sbjct 466 LKRAEQNGVTFDENIKRITASGKYSVQFQKLEND-----TD------SSLERMTKAVEGL 514 Query 542 IGVL-RDNAEILNITNVSKDETVVAELKEKL 571 + V+ + E ++IT VS D V L ++L Sbjct 515 VTVIGEEKFETVDITGVSSDTNEVKSLAKEL 545 Lambda K H a alpha 0.316 0.135 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 70791903 Query= gi|13508140|ref|NP_110089.1| transcription elongation factor [Mycoplasma pneumoniae M129] Length=160 Score E Sequences producing significant alignments: (Bits) Value gi|12045138|ref|NP_072949.1| transcription elongation factor (gre... 271 8e-97 >gi|12045138|ref|NP_072949.1| transcription elongation factor (greA) [Mycoplasma genitalium G-37] Length=161 Score = 271 bits (693), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 136/160 (85%), Positives = 147/160 (92%), Gaps = 1/160 (1%) Query 1 MELNKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEI 60 MELNKNYLT+EG KQLE ELE+LIQVKRP II+LLQEARDQGDLSENADYDAAKAQQGEI Sbjct 1 MELNKNYLTQEGFKQLEKELENLIQVKRPEIIRLLQEARDQGDLSENADYDAAKAQQGEI 60 Query 61 ETRIAEIQDILANVKLINESQTK-KANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEE 119 ETRIAEIQDILAN KLI++ Q K K KV+LGSTVEIYDYSSK++EKYTIVG LEANPEE Sbjct 61 ETRIAEIQDILANAKLISDHQAKTKVTKVSLGSTVEIYDYSSKSNEKYTIVGTLEANPEE 120 Query 120 HRISNESPLAHAIYGRLVDDECDVVGIEVPYRVKIVKIIN 159 H+ISNESPLA AIYGRL+ DECDVVGIEVPYRVKI+KI N Sbjct 121 HKISNESPLALAIYGRLIGDECDVVGIEVPYRVKILKISN 160 Lambda K H a alpha 0.311 0.131 0.353 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13915488 Query= gi|13508141|ref|NP_110090.1| putative prolyl-tRNA synthetase; similar to Swiss-Prot Accession Number P38708, from S. cerevisiae [Mycoplasma pneumoniae M129] Length=483 Score E Sequences producing significant alignments: (Bits) Value gi|12045139|ref|NP_072950.1| prolyl-tRNA synthetase (proS) [Mycop... 667 0.0 >gi|12045139|ref|NP_072950.1| prolyl-tRNA synthetase (proS) [Mycoplasma genitalium G-37] Length=483 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/483 (65%), Positives = 381/483 (79%), Gaps = 0/483 (0%) Query 1 MANKDQNLTLWYDQLLSKAQLVSYGDVKGTNCFLPNSWNLWLQIQRLYNNATALIKLKDK 60 M K Q+LT WYDQLL KA+L+ +G+VKGT CFL NSW LW++IQ+LYN+A A Sbjct 1 MTKKTQDLTSWYDQLLVKAKLICHGEVKGTVCFLNNSWGLWMEIQQLYNDAIANKNQLSA 60 Query 61 VILKQFIPIEPLPYTVEQVQLPTLSFYSEYQKEKRHVEGFNPELFLIEQIGTKKLHDPLV 120 + L +F P Y V QVQLPTLSFYSEYQKEK H++GFNPELFLI Q+G K+L+DPLV Sbjct 61 IALTKFQPTTSFCYQVFQVQLPTLSFYSEYQKEKTHIKGFNPELFLINQVGQKQLNDPLV 120 Query 121 LRPTSEIAFCNLWKKQSFSYQNLPVIYNQWTCVFRAEKNTRPFLRNSEFYWQETHGLFSD 180 LRPTSEIAFCNLWKKQ SY +LP+IYNQWT VFRAEKNTRPFLRNSEFYWQETHGLF D Sbjct 121 LRPTSEIAFCNLWKKQELSYHDLPLIYNQWTQVFRAEKNTRPFLRNSEFYWQETHGLFVD 180 Query 181 GVNSESAAIAFWKLYQDIIVNQLCIPAFVGLKSPNERFAGAQNTWTVESIMPDGQALQCA 240 SE AAI+FW LYQD+I+N+LCIPAFVGLKS +E+FAGA+NTWT+E+IMPDGQ+LQCA Sbjct 181 QSQSEQAAISFWNLYQDLIINKLCIPAFVGLKSESEKFAGAKNTWTIEAIMPDGQSLQCA 240 Query 241 TSHDLGQTFTKPFGLTFQNQANQQAIPYSFSCGISTRILGALLLTHSDDFGLVLPWKVAP 300 TSHDLG TFTK F +++Q++ NQ+ P SFSCG+STRILGA+ LTHSDD+GLVLPW +A Sbjct 241 TSHDLGDTFTKSFTISYQSKTNQKMTPSSFSCGMSTRILGAIFLTHSDDYGLVLPWYLAS 300 Query 301 IQVKLYLFDKKGDTKTVELAQKVQTLLEQLAIRFQFIKVENQLGKQLGQGEVNGIPFQLI 360 QVKLYLFDK + KT LA V+ LE+L IRF FI++ NQLGKQL +GE+ GIP Q+I Sbjct 301 KQVKLYLFDKNNNPKTRALAFLVKDFLEKLKIRFSFIEINNQLGKQLLKGEIEGIPLQMI 360 Query 361 VDNPQTVNIFNRLTRVKTAYSFEQLASRFVELVQQYHQAMYDKAKAVVQQKVVQATTLKQ 420 VDN +T+NIFNRLTR+KT+ +F L + FV LV YH MY KA +V+QK+ + TLK+ Sbjct 361 VDNEKTINIFNRLTRLKTSLTFANLQTEFVNLVNNYHTEMYRKANDLVEQKLARVQTLKE 420 Query 421 IEQAFNDKKAVLCAVRLTDTLEQQLKERYQVTVRCCLEQLQKPQICPFSGESAQDYVLIA 480 IEQAF +KKAVLC V+LT LEQ LK +YQV+VRC ++ Q CPF+ + D VLIA Sbjct 421 IEQAFKNKKAVLCTVKLTGELEQHLKTKYQVSVRCVFKKSDVTQNCPFTNQPCFDSVLIA 480 Query 481 RAY 483 RAY Sbjct 481 RAY 483 Lambda K H a alpha 0.321 0.135 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 57306217 Query= gi|13508142|ref|NP_110091.1| hypothetical protein MPN403 [Mycoplasma pneumoniae M129] Length=122 Score E Sequences producing significant alignments: (Bits) Value gi|12045140|ref|NP_072951.1| hypothetical protein MG284 [Mycoplas... 172 1e-58 >gi|12045140|ref|NP_072951.1| hypothetical protein MG284 [Mycoplasma genitalium G-37] Length=132 Score = 172 bits (436), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 84/110 (76%), Positives = 92/110 (84%), Gaps = 0/110 (0%) Query 8 QSKHLYSLMTKFKRSQLILKHQSNNFASELWNEEDIIRSKQFIELIEDTLLHLKKDTVDF 67 QSK L +LMTKFKRSQLILKHQ+NN A ELWNE DI SKQ IELIEDT LKK+TVDF Sbjct 12 QSKSLAALMTKFKRSQLILKHQANNIALELWNENDINLSKQLIELIEDTFSMLKKETVDF 71 Query 68 IYDIFIYGKKPCDISYSNSTYYKKLNKAANSFFDHFVWEAPIYKTKELKN 117 IYDI+IYGKKPCDI YSNSTYYKKLNKAANSFFDHFVW++ I + + N Sbjct 72 IYDIYIYGKKPCDIGYSNSTYYKKLNKAANSFFDHFVWDSSILDKRIITN 121 Lambda K H a alpha 0.318 0.133 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8930705 Query= gi|13508143|ref|NP_110092.1| hypothetical protein MPN404 [Mycoplasma pneumoniae M129] Length=346 Score E Sequences producing significant alignments: (Bits) Value gi|12045141|ref|NP_072952.1| hypothetical protein MG285 [Mycoplas... 406 3e-144 >gi|12045141|ref|NP_072952.1| hypothetical protein MG285 [Mycoplasma genitalium G-37] Length=347 Score = 406 bits (1044), Expect = 3e-144, Method: Compositional matrix adjust. Identities = 193/345 (56%), Positives = 254/345 (74%), Gaps = 0/345 (0%) Query 2 TILTVRQIQNNYYTEYYMGPVRNFADKKEVYFDAKVNNIESKVNKDKALLHITLALKYDS 61 IL V++IQNN TEY M PVRNFA+ K+VYFDA++ NIESK++ +A +H+T+ALKY++ Sbjct 3 AILNVQRIQNNQVTEYTMSPVRNFANTKDVYFDAQLTNIESKIDSSRAQIHLTIALKYNT 62 Query 62 NFPSNMFQAQFKLGNWSSEKIPLQKAPDKKSDLENKIHYFYATLEVPRTALIKREINRIS 121 N P N+FQA F LGNW S+KI LQKAPDKK D N I YFYA L+VPR+AL K+EINR S Sbjct 63 NLPDNIFQAHFSLGNWQSDKIQLQKAPDKKHDSLNSIKYFYAFLDVPRSALAKKEINRFS 122 Query 122 EYIREELTIAFRLNDSSDRYHWSNYNLFDTVAADMYQTVIKETVTFGNMIRLNQLEGEKE 181 + L I+FRL D S++ +WS+Y+LFDTVA+++Y TVIKET+ FGNMI++N L+G K+ Sbjct 123 NVVARVLRISFRLQDQSEKGNWSDYHLFDTVASELYATVIKETINFGNMIKINALDGSKQ 182 Query 182 GNIQQSELKYGWTMLDYRNMGPLEEVNNLINIKFNQPVKVVSVGVTVSYTAPDGKRQELK 241 Q KY WTM DYRN+ L+EV NLINI F++PV++V+V V + Y G+ QE+K Sbjct 183 LTSSQGSFKYSWTMYDYRNLEQLDEVRNLINISFDKPVQIVNVDVKIHYVPTKGRLQEIK 242 Query 242 DQAEYQHTLNPNEEFKLNFPRRLSFNRVTKKLDFDPNGSAVFLPQGGFGSYEIKLEANVG 301 Q E+++ L+ NE+ KLN +F++ KKL D +G+ +FLPQGG+GSYEI + A VG Sbjct 243 QQGEFENNLDVNEKLKLNLIGNWNFDKHNKKLISDISGTGIFLPQGGYGSYEIMIGATVG 302 Query 302 NQFYTIVATNSFEYAHPFDDPKTNDFFLVQYAPVYSLFNFSDLIQ 346 N FYTI+A N F+Y P DD + NDFF V Y PVYS +NFSDL Q Sbjct 303 NDFYTIIANNQFKYETPLDDLEQNDFFEVNYLPVYSTYNFSDLTQ 347 Lambda K H a alpha 0.318 0.135 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 38930375 Query= gi|13508144|ref|NP_110093.1| hypothetical protein MPN405 [Mycoplasma pneumoniae M129] Length=197 Score E Sequences producing significant alignments: (Bits) Value gi|12045142|ref|NP_072953.1| hypothetical protein MG286 [Mycoplas... 279 1e-98 >gi|12045142|ref|NP_072953.1| hypothetical protein MG286 [Mycoplasma genitalium G-37] Length=196 Score = 279 bits (713), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 128/196 (65%), Positives = 163/196 (83%), Gaps = 0/196 (0%) Query 1 MIFSISKRKLICGFSLVALTIAGIVGGVYLVTKNNQQTTPQTNHFNVADPVNKVPNWRKL 60 MIFSISKRKLICGF LV LTI G++GGVYLVTKNN+ ++FN + ++K+PN++ + Sbjct 1 MIFSISKRKLICGFLLVILTIGGVLGGVYLVTKNNKDNYQNESNFNNQEQISKIPNFKAI 60 Query 61 GPETQRELRDLLYPLDDTGYFIYKYGAISRYLQSQKELDELVDYRTVLPSTQKHFKYDSF 120 GPETQR LR+ YPLDD+GY++YKYG I+RYL+++ ELDEL++YR ++PS + H K +F Sbjct 61 GPETQRILRERNYPLDDSGYYVYKYGEINRYLRNESELDELINYRVMVPSLKLHHKRVNF 120 Query 121 NQSVLESKLRKWLMKAIKQHPYFQHFEFDPVLKAQYNINIPAQKITVNAVWFYKKDNDLT 180 +++ LESKLRKW++KAIKQH YFQHFE +P L+ QYN+NIPAQKI VNAVW YKKDND Sbjct 121 DKAFLESKLRKWIIKAIKQHNYFQHFENEPNLRVQYNMNIPAQKIDVNAVWSYKKDNDAA 180 Query 181 TGKPIRYWDQFEIKLK 196 TGKPIRYWDQFE+KLK Sbjct 181 TGKPIRYWDQFELKLK 196 Lambda K H a alpha 0.321 0.137 0.419 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 18862035 Query= gi|13508145|ref|NP_110094.1| acyl carrier protein homolog [Mycoplasma pneumoniae M129] Length=84 Score E Sequences producing significant alignments: (Bits) Value gi|12045143|ref|NP_072954.1| acyl carrier protein, putative [Myco... 113 2e-36 >gi|12045143|ref|NP_072954.1| acyl carrier protein, putative [Mycoplasma genitalium G-37] Length=84 Score = 113 bits (282), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 56/84 (67%), Positives = 69/84 (82%), Gaps = 0/84 (0%) Query 1 MQERDILLKIKEIAKAKNFKTELDESVLQKPFRELKIDSLDMFSVIVSLEKEFDIMFEDE 60 MQ +ILLKIKEIAK+KNF LDE + +P RELKIDSLDMFS++VSLE EF I F+DE Sbjct 1 MQTHEILLKIKEIAKSKNFNLNLDEKTINQPLRELKIDSLDMFSIVVSLENEFGISFDDE 60 Query 61 KLMQLNNLAELIAEVKHLISQKGV 84 KLM L NLA+L+ EVK+L+++KGV Sbjct 61 KLMNLKNLADLVLEVKNLLAKKGV 84 Lambda K H a alpha 0.318 0.136 0.345 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4329961 Query= gi|13508146|ref|NP_110095.1| lipase [Mycoplasma pneumoniae M129] Length=879 ***** No hits found ***** Lambda K H a alpha 0.317 0.133 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 110154400 Query= gi|13508147|ref|NP_110096.1| hypothetical protein MPN408 [Mycoplasma pneumoniae M129] Length=760 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 642 0.0 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 468 4e-157 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/801 (45%), Positives = 494/801 (62%), Gaps = 85/801 (11%) Query 5 KGFFALSSCTLGLGLILTACGARGKFDQVDDGVIKLATSIQNKDSIAALNTIYKKYKE-R 63 KGF A+ G +L AC +FDQVDDG IKLA+S+ +K + AL T+ KKY + + Sbjct 4 KGFLAVGVSVFGFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKYNDTK 63 Query 64 HPGSYPVQNFQVPGGYSGLRNDIRTRLSAKDGNNFYNIVLNYPDVVSSLATSDMQLILDN 123 PG YP++ Q+ GGY G + D++T++S KD NNFYN++LNYP++VS+L+ S M L D Sbjct 64 DPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMALNFDG 123 Query 124 VDTKLLSKNFLSFNERIGGVRQKGIYAIPISLSTELMVLNGPVLHYILNSAKKKENGAQM 183 V+ L NFLSFN RIGG+R GIYAIPIS+ST+LMV+NGPVLHYILNSA+K+ Sbjct 124 VNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARKEGTPTST 183 Query 184 IKRS--GSFSTVQKGTMAIDMNDQKTKDLWQKIENAAKANGKTTSTQTSPQPKNAVSSLQ 241 ++ S S +KGT+ I ND +T LWQ I+ A+ N T+ + +++ SS Sbjct 184 TVQATVSSRSAEKKGTLEI-ANDSETTKLWQNIQTTAQNNSNETTKEQKQVKRSSSSSST 242 Query 242 LKQAAEGTSTDNSQDAENSDNEIKKTWGEYKEEGNHTLKGYTFKASVFENWNELLDFSTR 301 E ++D SDN+IK+ WGEY +E + LK +TFKAS+FENWNE LDF+TR Sbjct 243 TSTTGE------TKDTTKSDNKIKEFWGEY-QEVDGGLKNFTFKASIFENWNETLDFATR 295 Query 302 VANSFPDKIKNQASKKATELQGVFGVDSVSGALFSATFAAGGGDYDKFFFNV--KNGRGN 359 +ANSFP+K+KN +K +LQGV GVDS S AL++A FAAG +YD FFFN+ + G + Sbjct 296 IANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRTGYAD 355 Query 360 FRNLLEKGSSYNNLQKVFNDYKQLISSNGLYINKGGAYSSNFLKFHQLAFSVGSSSGYHF 419 + N L K SSY NL+ V+ND+ +LI +NGL++N+GG+YSSNF KFHQLAFSV SS GY + Sbjct 356 YSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSGGYSY 415 Query 420 AFAGESAKRLEFGQKAIEYPRDTYEIKAPTNSQNGNGTLLGSFTKSKSNGKEQSGQDEDN 479 FA ++AKRL+F AIEYP T I+AP NS LLG+F S+ + Sbjct 416 YFAKDNAKRLKFSNYAIEYPSFTQTIQAP-NSSETESNLLGTFKLSEKD----------- 463 Query 480 QTSETIELYKSSVPSGKEAGKNALAITNQQLISALENAAKDNKTSQPQARSLTASDQVQI 539 I LYK S+PSGK+ G +A+ I+N LI+ LE A + N ++ Sbjct 464 -----INLYKGSIPSGKQQGVDAILISNPNLINILEQAKQKNTAQGSES----------- 507 Query 540 TQSSDKVIGYITTSNLDIDNNNTFDVGKLNGDKSTSKIIVNATLKTLNKINTLQSEEGII 599 +++K+IGY TT+N+++DN N F V KLN ++ KIIVNAT +TL++ TLQS E I+ Sbjct 508 --TTNKIIGYTTTANVNVDNQNIFSVSKLNNEQFQRKIIVNATEETLDQSQTLQSNESIV 565 Query 600 LPHPQKYKSTDPQAVATVQGPSIIGVHANAKENAETQKFINWFINQKET-WPENSKGNKN 658 LP P KYKSTD V QGP++IG+HAN KEN ET+KF+NWF+NQ T W N++ KN Sbjct 566 LPMPGKYKSTDKNKVMITQGPNLIGIHANEKENIETKKFVNWFLNQSITDWNSNNQ-QKN 624 Query 659 GQNGQMTAAQYFAKSSGYVLPYSETFTKQSEDE--------------------------- 691 TAA+YF + Y+LP E F K S+ E Sbjct 625 SDQTTKTAAEYFTDQASYILPLKEKFNKSSDLELKGSSSSSNLTTSSASASLLISNNSST 684 Query 692 -------------HSTTKDAYKILKDVNDGKLVGYSDPSDFRSGKFRDTIVAAFSGAVSS 738 ++ T A ++ + + +++ +SDPSDFR+G FR+ I ++F+ AV+S Sbjct 685 ASSPAPKKTNNNSNTFTAKALELFQQAANNEIIPFSDPSDFRNGTFRNNISSSFNAAVNS 744 Query 739 KADFNKFFKGFEQQLGQEYRR 759 K FN+F + F LG +RR Sbjct 745 KVSFNQFVQNFINSLGSGFRR 765 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 468 bits (1203), Expect = 4e-157, Method: Compositional matrix adjust. Identities = 302/765 (39%), Positives = 433/765 (57%), Gaps = 75/765 (10%) Query 3 IKKGFFALSSCTLG-LGLILTACGARGKFDQVDDGVIKLATSIQNKDSIAALNTIYKKY- 60 +K F LSS LG + L TAC A +FDQVDDG IKLAT + + + +L TI KY Sbjct 1 MKFKLFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIISKYN 59 Query 61 KERHPGSYPVQ--NFQVPGGYSGLRNDIRTRLSAKDGNNFYNIVLNYPDVVSSLATSDMQ 118 ++ P YPV+ + G YS + D++ +L AKD NNFYN+ NY DVVS L+ S M+ Sbjct 60 SQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRSQME 119 Query 119 LILDNVDTKLLSKNFLSFNERIGGVRQKGIYAIPISLSTELMVLNGPVLHYILNSAKKKE 178 L D VDT +FLSFN I V IYA+P ++S E++VLNGPVLHYIL+SAKK Sbjct 120 LSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAKKDS 179 Query 179 NGAQMIKRSGSFSTVQKGTMAIDMNDQKTKDLWQKIENAAKANGKTTSTQTSPQPKNAVS 238 N + + S KGTM + +D +T LW K+E AAK N +T TQ Sbjct 180 NTTLSTHSASNNS--NKGTMVV-ASDSETSSLWTKLEAAAKMNAQTNETQV--------- 227 Query 239 SLQLKQAAEGTSTDNSQDAENSDNEIKKTWGEYKEEGNHTLKGYTFKASVFENWNELLDF 298 LK +++ S + SD EIKK WG+Y +E + LK YTFKASVF NW +L DF Sbjct 228 ---LK-----SNSSESNQTQASDTEIKKIWGDY-QEVDGGLKNYTFKASVFNNWKDLNDF 278 Query 299 STRVANSFPDKIKNQASKKATELQGVFGVDSVSGALFSATFAAGGGDYDKFFFNVKNGRG 358 +TR+A SF K++ +KK E+Q VFG+ S+ AL++A FA+G DY+ F FN+KN R Sbjct 279 ATRIAKSFT-KLQ-TTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQRI 336 Query 359 NFRNLLEKGSS-YNNLQKVFNDYKQLISSNGLYINKGGAYSSN-FLKFHQLAFSVGSSSG 416 NF N K S+ + NL+ +FN +K LI NGL N N + KF+QLAF S++ Sbjct 337 NFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSSTAR 396 Query 417 YHFAFAGESAKRLEFGQKAIEYP--RDTYEIKAPTNSQNGNGTLLGSFTKSKSNGKEQSG 474 + ++FA +S KRL K IE + +E+ ++S N N L+G T S N K+ Sbjct 397 FPYSFASDSVKRLIVNDKTIENKNNKSVFEVNLSSDSDN-NSNLIG--TVSLENSKQ--- 450 Query 475 QDEDNQTSETIELYKSSVPSGKEAGKNALAITNQQLISALENAAKDNKTSQPQARSLTAS 534 + LY+ V S K+ G +AL I ++ LI+ L K+ + Q + +AS Sbjct 451 ----------VSLYEKQVDSNKQIGVDALLIKDETLINHL-------KSLKSQVSAKSAS 493 Query 535 DQVQITQSSDKVIGYITTSNLDIDNNNTFDVGKLNGDKSTSKIIVNATLKTLNKINTLQS 594 + Q Q+ ++ + ++ D FDVGKLNG T+KII+NAT T KI+TLQ Sbjct 494 ETSQTKQNK----TFLAFTTVNADQKAIFDVGKLNG--KTAKIIINATETTNAKISTLQE 547 Query 595 EEGIILPHPQKYKSTDPQAVATVQGPSIIGVHANAKENAETQKFINWFINQKETWPENSK 654 +E I+L PQ+++STDP +A VQGPS+IG+HAN +E+ ET+KF+NW++N K W ENS Sbjct 548 KEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFVNWYLNTKVQWEENSI 607 Query 655 GNKNGQNGQMTAAQYFAKSSGYVLPYSETFTKQSEDEHSTTKDAYKILKDVNDGKLVGYS 714 T A+Y A + Y+LP F + + +S + + D + ++ Sbjct 608 K---------TPAEYVADKASYLLP----FKNRLNNTNSYNEFVKTAVSQFADKNVTKFA 654 Query 715 DPSDFRSGKFRDTIVAAFSGAVSSKA-DFNKFFKGFEQQLGQEYR 758 +P+DF S K RD + + + A+++ + DF+ F LG + + Sbjct 655 EPADFLSNKVRDGVKSNLNAAINNHSIDFDSFINDLTDYLGSDVK 699 Lambda K H a alpha 0.310 0.128 0.356 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 94705463 Query= gi|13508148|ref|NP_110097.1| hypothetical protein MPN409 [Mycoplasma pneumoniae M129] Length=533 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 224 4e-65 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 224 bits (571), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 174/477 (36%), Positives = 248/477 (52%), Gaps = 94/477 (20%) Query 1 MDYVPWIGNGYRYGKNHRGVDDITAPKTGAGSSSGTSTNTSGSRSFLPTFSNVGVGLKAN 60 +D++PWIGNG S+S + + ++ S + LPTFSN+ VG+K+ Sbjct 765 LDFLPWIGNG------------------KPFSNSPSPSTSASSSTPLPTFSNINVGVKSM 806 Query 61 VQATLGGSQTTTTGGSKWPTLDQANLLLWTGSGWR----NDKNGQSDENHTTFKSATGSG 116 + L T +W + + +WTG+G+R N KNG E Sbjct 807 ITQHLNKENT------RWVFIPNFSPDIWTGAGYRVQSANQKNGIPFE------------ 848 Query 117 QQGGSSGTSAGNPDSLKQDKISKSGDSLSVVDTGQGDDTHYANLPPSITPTSDWPNALSF 176 Q S+ ++ +P+S +K++ SG G T Y LP SI+PTSDW NAL+F Sbjct 849 QVKPSNNSTPFDPNS-DDNKVTPSG--------GSSKPTTYPALPNSISPTSDWINALTF 899 Query 177 TNKNNAQRVQLFLRGLLDSIPVLVNKSGQDDNSKF-KAEHQKWKYSDFKSDQTKLNLPAY 235 TNKNN QR QL LR LL +IPVL+NKSG D N +F K QKW K++ + NLP + Sbjct 900 TNKNNPQRNQLLLRSLLGTIPVLINKSG-DSNDQFNKDSEQKWD----KTETNEGNLPGF 954 Query 236 GEVNGLLNPALVETYFGTTRAGGSGNQNRTTVPGIGFKIPEQNNDSKAVLITPGLAWTPQ 295 GEVNGL N AL+ TY G G +T P IGFK + ++ S + L+ GL WT Q Sbjct 955 GEVNGLYNAALLHTY------GFFGTNTNSTDPKIGFKA-DSSSSSSSTLVGSGLNWTSQ 1007 Query 296 DVGNLVV-SGTTVSFQLGGWLVTFTDFVKPRSGYLGLQLTGLDVSEATQRELIWAPRPWA 354 DVGNLVV + T+ FQLGGW +TFTDF++PR+GYLG+ L+ L + +IWA +PW Sbjct 1008 DVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYLGITLSSLQ-----DQTIIWADQPWT 1062 Query 355 AFRGSWVNRLGRVESVWDFKGVWADQAHSAVSESQAATSGTTTATGAALPEHPNALAFQV 414 +F+GS+++ G +S+WD + S TT T L + +FQ+ Sbjct 1063 SFKGSYLDSDGTPKSLWD-----------PTALKSLPNSSTTYDTNPTL-----SPSFQL 1106 Query 415 SVVEASAYKPNTSSGQTQSTNSSPYLHLIQPKKVTQSDKLDDDLKNLLDPNEVRARM 471 Y+PN Q+TN+ Y LI+P T + L LL ++A++ Sbjct 1107 -------YQPNKVKAY-QTTNT--YNKLIEPVDATSAATNMTSLLKLLTTKNIKAKL 1153 Lambda K H a alpha 0.311 0.128 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 63950082 Query= gi|13508149|ref|NP_110098.1| hypothetical protein MPN410 [Mycoplasma pneumoniae M129] Length=148 ***** No hits found ***** Lambda K H a alpha 0.310 0.129 0.351 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12362145 Query= gi|13508150|ref|NP_110099.1| hypothetical protein MPN411 [Mycoplasma pneumoniae M129] Length=252 ***** No hits found ***** Lambda K H a alpha 0.317 0.133 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26315128 Query= gi|13508151|ref|NP_110100.1| not in Genbank, but in the ZMBH list~MPN412 [Mycoplasma pneumoniae M129] Length=278 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 211 5e-64 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 211 bits (538), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 114/269 (42%), Positives = 158/269 (59%), Gaps = 46/269 (17%) Query 6 VKDAQKDDQKSSEYLSGEAGSQAGGSTQGTSTTTQRRGSSNENKVKVLQVAMKKKSDSED 65 VKD+ K +K SE T+ ++ G + + K L+V +++ S S+ Sbjct 246 VKDSSKQGEKLSE----------------TTASSMSSGMATSTRAKALKVEVERGSQSD- 288 Query 66 NGQIELETNNLANAPIKRGSNNNQQVQLKADDFGTTSSSESGQSGTQGSTPSNPGPWTPW 125 L N+ A P+K N++ +V+L+A+ T + W P Sbjct 289 ----SLLKNDFAKKPLKH-KNSSGEVKLEAEKEFTEA-------------------WKPL 324 Query 126 LTTEQIHNDPAKFAASILILYDAPYARNRTAIDRVDHLDPKVMTANYPPSWRTPKWNHHG 185 LTT+QI + A+++ YDAPY+ N TA VDH+DPK M NYPPSW+TPKWNHHG Sbjct 325 LTTDQIAREKG-MGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKTPKWNHHG 383 Query 186 LWDWKARDVLLQTTGFFNPRRHPEWFDGGQTVADNEKTGFDVDNSENTKQGFQKEADSDK 245 +WD+ AR++LLQTTGFFNPRRHPEWFD GQ ADN GF V ++++ K GF+K + Sbjct 384 IWDYNARNLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTDHKKDGFKKNS---- 439 Query 246 SAPIALPFEAYFANIGNLTWFGQALLVFG 274 S+PIALPFEAYFANIGN+ G ++ +FG Sbjct 440 SSPIALPFEAYFANIGNMVAIGNSVFIFG 468 Lambda K H a alpha 0.311 0.128 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29789397 Query= gi|13508152|ref|NP_110101.1| not in Genbank, but in the ZMBH list~MPN413 [Mycoplasma pneumoniae M129] Length=139 ***** No hits found ***** Lambda K H a alpha 0.318 0.132 0.462 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11235917 Query= gi|13508153|ref|NP_110102.1| hypothetical protein, involved in cytadherence [Mycoplasma pneumoniae M129] Length=493 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 375 1e-121 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 375 bits (964), Expect = 1e-121, Method: Compositional matrix adjust. Identities = 210/461 (46%), Positives = 279/461 (61%), Gaps = 88/461 (19%) Query 9 NFTNNPAPKAVTGFKLDNGRAYRKLNEAWPVYEPLDSTKDGKGKDKDGWTTSGASEPKGD 68 + NNP+P A TGFKL G AYRKL+E+WP+YEP+D TK GKGKD GW+++ +E K D Sbjct 192 DLNNNPSPNASTGFKLTTGNAYRKLSESWPIYEPIDGTKQGKGKDSSGWSSTEENEAKND 251 Query 69 APLVSSTGSQMSAVTDSQQSGHNSGLVSLAQRSTTVAVQKSDSSGFQGQGTTDNKFQKYL 128 AP VS GS F KYL Sbjct 252 APSVSGGGSSSGT------------------------------------------FNKYL 269 Query 129 NTAQALHQMGVIVPSLETWPGKPSTGIATRAGGGVSVQAATRQSSSTNEDLP-NVITQLY 187 NT QAL +G++ ++ P NVITQLY Sbjct 270 NTKQALESIGILF----------------------------------DDQTPRNVITQLY 295 Query 188 HTSTSQLAYLNGQIVVMGSNAVPSLWYWVVD---ERTTSGSATWWAKTHLNFGTEVQKSF 244 + STS+LA N IVVMG++ +PS+WYWVV+ + S TW+A T+L++G + QK F Sbjct 296 YASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWGEDKQKQF 355 Query 245 VENQLGFKDDSNSDSKNSNLKAQDLTQPAYLITGLDVVQDHLVFAAFKAGAVGYDMTTDS 304 VENQLG+K+ ++++S N ++ TQPAYLI+G+D V D ++F+ FKAG+VGYD ++ S Sbjct 356 VENQLGYKETTSTNSHN--FHSKSFTQPAYLISGIDSVNDQIIFSGFKAGSVGYDSSSSS 413 Query 305 NAS---TKDQALAWSTTAGLDSAGGYNNLVENTAGLNGPINDLFTLLDTFAYVTPVSGMK 361 ++S TKDQALAWSTT LDS GY +LV N GLNGPIN F++ DTF++V P SG Sbjct 414 SSSSSSTKDQALAWSTTTSLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFVVPYSGNH 473 Query 362 GGSQNNEEVQTKYPVKDDSKASAKIASLINASPLNSYGDDGVTVFDALGLNFNFKLDEAR 421 + ++T YPVK D K++ KI SLINA+PLNSYGD+G+ VFDALGLN+NFK ++ R Sbjct 474 TNNGTTGPIKTAYPVKKDQKSTVKINSLINATPLNSYGDEGIGVFDALGLNYNFKSNQER 533 Query 422 LPSRTDQLLVYGIVNESELKSARENAQSTSDDNSNTKVKWT 462 LPSRTDQ+ VYGIV+ +EL+SA+ +A ST D TKV W+ Sbjct 534 LPSRTDQIFVYGIVSPNELRSAKSSADSTGSD---TKVNWS 571 Lambda K H a alpha 0.308 0.125 0.358 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 58707347 Query= gi|13508154|ref|NP_110103.1| high affinity transport system protein P37 [Mycoplasma pneumoniae M129] Length=380 Score E Sequences producing significant alignments: (Bits) Value gi|12045144|ref|NP_072955.1| high affinity transport system prote... 455 2e-162 >gi|12045144|ref|NP_072955.1| high affinity transport system protein P37 [Mycoplasma genitalium G-37] Length=368 Score = 455 bits (1170), Expect = 2e-162, Method: Compositional matrix adjust. Identities = 217/363 (60%), Positives = 273/363 (75%), Gaps = 12/363 (3%) Query 18 IIPATIFVSCARRESNHLIFNISLDHDADASISKFFELYSNNLSKKLDKKVTVSFNIIDD 77 II ++ +SCA + N LIFNISLDH+AD SI KFF ++S LS KL+KK+ V+FNI+DD Sbjct 17 IISTSLLISCATKSDNTLIFNISLDHNADTSIEKFFTVFSKKLSGKLNKKINVNFNIVDD 76 Query 78 SFTKISNIQTAKADFAFVNSQSIKDNGIEEFNLILQTQTDAFKEDTNLDYYSDGQLKSKA 137 SFTKI+NIQ KADFAFVNSQ+I N + ++QT T AFKED LDYY DG L+ KA Sbjct 77 SFTKINNIQANKADFAFVNSQAIASNNWFGYTPLIQTLTTAFKEDLELDYYEDGNLQKKA 136 Query 138 EKMTTLFSKTPYKDWEDTAQQWTGSRYNFLYETNKLINFYRGMILITGSEEEIKKIKEAW 197 EK LF PYK+W+D Q+WTG+RY+FLYE +KL++FYR MILITGS EI IK+AW Sbjct 137 EKTNLLFLSPPYKEWDDIKQKWTGNRYDFLYEPSKLVSFYRSMILITGSASEITAIKKAW 196 Query 198 DQKKWSDFMNYGIGHGSSGSAGKFQLPDLLLRKHFGSSYPGLQNAINQNPDKFANVRGRE 257 ++K W+ FM +GIGHG + SA +F+LPDLL RKHF +YPGLQNAIN +PDKFA VRGRE Sbjct 197 NEKNWNQFMKFGIGHGQTNSASRFELPDLLFRKHFAKNYPGLQNAINSDPDKFAVVRGRE 256 Query 258 IGRDNKIKIVFDDANSFAWTHNDKNATNHFYTPTENNGKGDSEKSNNKNNKVEILTYTDP 317 IG + IKIVFDDANSF+WT N K + FYTP + N+++EILTY+DP Sbjct 257 IGINKNIKIVFDDANSFSWTQNIKGSKRPFYTPID------------PNDRLEILTYSDP 304 Query 318 MLYDIGIVSDTLSDRYQKAIAEVFVELAKTKQDIYGPSYGYNGYNLITDPNKEILDVIHK 377 +LYDIGIVS+ LS YQKAI E+F+ELA++ +D+YGPS GYNGY +I D KE++++I K Sbjct 305 LLYDIGIVSNNLSRIYQKAIGEIFIELAQSSEDLYGPSIGYNGYKMINDFEKEVVEIIEK 364 Query 378 TYG 380 TYG Sbjct 365 TYG 367 Lambda K H a alpha 0.316 0.134 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 43452948 Query= gi|13508155|ref|NP_110104.1| ATP-binding protein P29 [Mycoplasma pneumoniae M129] Length=244 Score E Sequences producing significant alignments: (Bits) Value gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 298 6e-105 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 94.0 2e-24 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 83.6 7e-21 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 79.3 3e-19 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 75.1 9e-18 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 76.3 9e-18 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 64.7 5e-14 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 64.3 1e-13 gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein... 62.4 2e-13 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 59.7 5e-12 gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 58.2 1e-11 gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein... 57.8 2e-11 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 298 bits (764), Expect = 6e-105, Method: Compositional matrix adjust. Identities = 147/241 (61%), Positives = 196/241 (81%), Gaps = 0/241 (0%) Query 4 PVLVFDQVSLRYNGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIY 63 P+L F++VS+ Y APLL+NI+F + E++CLLGKSGVGK+SLLN +TNTK + G +Y Sbjct 5 PILSFEKVSIIYKKAPLLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVY 64 Query 64 FNGIASNNKDYKQLKKQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLR 123 F+G+ASN K+YK+LKKQ S+LDQ+PNLIDTD+VY+AI R AK L W Q+L EP+ ++ Sbjct 65 FDGVASNKKEYKKLKKQCSYLDQIPNLIDTDYVYEAILRSAKQKLTWLQKLICFEPKWIK 124 Query 124 EQIIQILEEVNLKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHK 183 ++I+ IL+EVNL +YV+ IIKDLS GQKQRVE+AKLFF + ++LLVDEPTTGLD + A K Sbjct 125 DKILAILKEVNLNDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASK 184 Query 184 IMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIALKNKALVLDQATNKLTKQKLMQIYH 243 IM+LI F +++ +TL+FVTHD++ ALKYS RIIALKN ALVLD+ T KLTK++L +IY Sbjct 185 IMDLITDFVKREKITLVFVTHDIDLALKYSTRIIALKNHALVLDRLTEKLTKEQLYKIYD 244 Query 244 D 244 + Sbjct 245 N 245 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 94.0 bits (232), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 15/218 (7%) Query 20 LLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNGIASNNKDYKQL-- 77 +L +++ I+ GE + +LG SG GKT+LLN I +IS G+ +QL Sbjct 104 ILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLLT 163 Query 78 --KKQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILEEVNL 135 K ++ Q NLI+ YD I ++N + +QR R I ++ E++++ Sbjct 164 YRKNNLGYVYQRYNLIELLSAYDNI-AISQNLIPKYQR---------RLDIEELAEKLDI 213 Query 136 KEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQFARQK 195 KE + ++SGGQKQRV +A+ ++LL DEPT LD +A I+ L+ + Sbjct 214 KEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTY 273 Query 196 AMTLIFVTHDVEFALKYSDRIIALKNKALVLDQATNKL 233 T++ VTHDV + ++RII + + +V +Q L Sbjct 274 KQTILMVTHDVSLT-RIANRIIKISDGKIVSNQLVRPL 310 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 83.6 bits (205), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 17/222 (8%) Query 8 FDQVSLRYNGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNGI 67 F V+ YN PL+ ++F++ GE++C++G +G GK+++ +T G I G Sbjct 11 FINVAFSYNELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGK 70 Query 68 ASNNKDYKQLKKQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQII 127 + + L+ + Q P D F+ I E + F R++I Sbjct 71 TVDFDNVSYLRNNIGIIFQNP---DNQFI--GITVEDDIAFGLENKCF------SRQKIK 119 Query 128 QILEEVNLKEYVTYIIK----DLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHK 183 I++EV L+ IK +LSGGQKQRV +A + N +++ DE T LD Sbjct 120 AIIDEVTLQTQTDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKT 179 Query 184 IMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIALKNKALV 225 I + +++ A+Q +I +THD+E K +D+++ + L+ Sbjct 180 IKQFMVKLAKQ-GKCVISITHDMEEVTK-ADKVLVMNEGKLI 219 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 79.3 bits (194), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/222 (27%), Positives = 110/222 (50%), Gaps = 26/222 (12%) Query 16 NGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTI-----YFNGIASN 70 N ++++ ++T + C++G SG GK++L+N ++G I Y Sbjct 32 NPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIYIGAKQRK 91 Query 71 NKDYKQLKKQFSFLDQVP------NLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLRE 124 K++K+L+K S + Q P + ++ D ++ + A K+ R+ Sbjct 92 IKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPV---ALGQSKY----------DARQ 138 Query 125 QIIQILEEVNLK-EYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHK 183 + LE + LK ++ +LSGGQK+RV +A + ++L+ DEPT GLD + Sbjct 139 KAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGERE 198 Query 184 IMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIALKNKALV 225 +M+L I+ A+Q+ T+ +TH +E L+ +D ++ L LV Sbjct 199 MMQL-IKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLV 239 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 75.1 bits (183), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 62/216 (29%), Positives = 110/216 (51%), Gaps = 17/216 (8%) Query 16 NGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNG---IASNNK 72 N + +IN I PGE + +LGKSG GKTSLL+ I+ + G + G I ++ Sbjct 67 NNQLICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNTICCSDA 126 Query 73 DYKQLK-KQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILE 131 L+ K ++ Q L+ V D I +L L + + ++LE Sbjct 127 KLTALRNKNVGYIFQQYGLLRDLDVDDNI------------KLALPLKKRFNNNLEELLE 174 Query 132 EVNLKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQF 191 + LKE+ + LSGGQ+QRV +A+ ++L DEPT +++ + KI++ +++ Sbjct 175 RLELKEHRHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEY 234 Query 192 ARQKAMTLIFVTHDVEFALKYSDRIIALKNKALVLD 227 R K T++ VTH+ E ++ + R+I + + +++D Sbjct 235 NRDKGTTIVIVTHN-EKIVELAKRVIKIHDGKIIVD 269 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 76.3 bits (186), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 97/190 (51%), Gaps = 14/190 (7%) Query 20 LLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNG---IASNNKDYKQ 76 +L+ ++ I + I +LG SG GKT+LLN I+ S G++ NG I N++ + Sbjct 251 VLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTK 310 Query 77 LKKQF-SFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILEEVNL 135 ++++ ++ Q L+ V + I E NL+ +P S R I +LE V + Sbjct 311 FRQKYVGYIFQQYGLLPNLTVRENI--EIGANLQ-------PDP-SKRISIDALLEAVGM 360 Query 136 KEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQFARQK 195 + +LSGGQ+QRV +A+ F N ++ DEPT LDL +++ + ++ Sbjct 361 DSLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRY 420 Query 196 AMTLIFVTHD 205 T+I VTH+ Sbjct 421 QTTMIIVTHN 430 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 64.7 bits (156), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 64/223 (29%), Positives = 107/223 (48%), Gaps = 20/223 (9%) Query 20 LLENINFTISPGEHICLLGKSGVGKTSLLNCIT-----NTKTISKGTIYFNGIASNNKDY 74 +L +IN I + L+GKSG GK++ + C+ N T G IYF G N+ Sbjct 98 VLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGII 157 Query 75 KQLKKQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQS-----LREQIIQI 129 L + S L +F +I+ N+ + R + ++ +R+ +I Sbjct 158 NDLTLRTSVGMVFQKLTPFNF---SIFE----NIAYGIRAHGIHNKNAINEIVRQALISA 210 Query 130 LEEVNLKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELII 189 +K+ + LSGGQ+QR+ +A+ VLL+DEPT+ LD I + I EL+I Sbjct 211 ALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSI-ELLI 269 Query 190 QFARQKAMTLIFVTHDVEFALKYSDRIIALKNKALVLDQATNK 232 Q ++K T++ VTH + ++ +D I + V++Q T K Sbjct 270 QQLKEK-FTIVIVTHSMAQTIRITDETIFFAD-GRVIEQGTTK 310 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 64.3 bits (155), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 0/96 (0%) Query 124 EQIIQILEEVNLKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHK 183 +++ ++E V LK + +LSGG KQRV +A+ ++LL+DEP + LD Sbjct 326 KKVSDVIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKN 385 Query 184 IMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIAL 219 + + + Q ++ +T I VTHD E AL SDRI+ + Sbjct 386 LQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVM 421 >gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length=253 Score = 62.4 bits (150), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/225 (26%), Positives = 107/225 (48%), Gaps = 14/225 (6%) Query 20 LLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNGIASNNKDYKQLKK 79 +L I+F + G H+ ++G +G GK++L+ + KGTI+FN + + ++ Sbjct 1 MLNQISFNVQDGCHLAVIGHNGSGKSTLVKLLGGFLKAKKGTIFFNDKELTSVGFNKI-- 58 Query 80 QFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILEEVNLKEYV 139 L Q P D + D + +E L+ L + + I ++L V LK+ Sbjct 59 --GILLQDP---DVQLLADTLHQELIFTLENHGVL----ASEMDKIINEVLTVVELKDKQ 109 Query 140 TYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQFARQKAMTL 199 +K LS G+KQR A L Q+ L+DE + LD ++K+ + + +++ + Sbjct 110 FTPLKKLSFGEKQRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIV 169 Query 200 IFVTHDVEFALKYSDRIIALKNKALVLDQATNKLTKQKLMQIYHD 244 I +THD L +D II L +L+ A + +Q + ++H+ Sbjct 170 INITHDFN-DLFLADEIIFLSKGSLIKKFAPEAIYEQ--LDLFHN 211 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 59.7 bits (143), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 78/145 (54%), Gaps = 3/145 (2%) Query 76 QLKKQFS-FLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQIIQILEEVN 134 QLKKQ+ FL+Q+ + + D + N ++ + + Q + + +++ ++ Sbjct 299 QLKKQYKVFLNQL--IKNYSLKTDKLTDTQLNEIEQIKTRIVSIKQFINKTALEVANKLA 356 Query 135 LKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTTGLDLINAHKIMELIIQFARQ 194 + + +T +SGGQ+QRV +A+ ++LL+DEP + LD + + I QF ++ Sbjct 357 ITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQE 416 Query 195 KAMTLIFVTHDVEFALKYSDRIIAL 219 +T +FVTHD E A+ SD I+ + Sbjct 417 LQITTVFVTHDQEEAMSISDVIVCM 441 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 58.2 bits (139), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/237 (23%), Positives = 111/237 (47%), Gaps = 22/237 (9%) Query 6 LVFDQVSL---RYNGAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTI 62 L F+ +S+ ++N +++ + I P + + G+SG GKT+L+ + + S G I Sbjct 72 LFFNNISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLIKQLGLFEKPSFGYI 131 Query 63 YFNGIASNNKDYKQ-----LKKQFSFLDQVPNLIDTDFVYDAIWRE---AKNNLKWWQRL 114 Y+Q K++ ++ Q + F D+I E NLK + Sbjct 132 NCANYCYFANQYQQKITKNFKQKIGYILQKA---EDQFFCDSILEEVLTGAVNLKLCHK- 187 Query 115 FLVEPQSLREQIIQILEEVNLKEYVTYIIKDLSGGQKQRVEVAKLFFANSQVLLVDEPTT 174 + + ++ + + N+ I +LS GQK+R+ +A + + L++DEPT Sbjct 188 ---KDVNYAKKYLDLCGLENIPLIKNPI--ELSDGQKKRLALASVLAMQVKFLILDEPTV 242 Query 175 GLDLINAHKIMELIIQFARQKAMTLIFVTHDVEFALKYSDRIIALKNKALVLDQATN 231 GLD + + ++++ A ++ ++ V+HDV+F + +D+II L ++ N Sbjct 243 GLDQMAISNLSKMLV--AMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQTTVN 297 >gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=589 Score = 57.8 bits (138), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/205 (24%), Positives = 97/205 (47%), Gaps = 27/205 (13%) Query 8 FDQVSLRYN-GAPLLENINFTISPGEHICLLGKSGVGKTSLLNCITNTKTISKGTIYFNG 66 F+ V+ YN P L INF++ G+ + ++G +G GK++++N + +G IY + Sbjct 354 FENVAFGYNKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYKPFEGKIYMDN 413 Query 67 IASNNKDYKQLKKQFSFLDQVPNLIDTDFVYDAIWREAKNNLKWWQRLFLVEPQSLREQI 126 ++ K +++ S + Q F++ +E N++ L + ++I Sbjct 414 FEISDVTKKAWREKISIVLQ------DSFLFSGTIKE---NIR------LGRQDATDDEI 458 Query 127 IQILEEVNLKEYV--------TYIIKD---LSGGQKQRVEVAKLFFANSQVLLVDEPTTG 175 I + N +++ TYI LS G++Q + +A+ N+ VLL+DE T+ Sbjct 459 IAACKTANAHDFIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNAPVLLLDEATSS 518 Query 176 LDLINAHKIMELIIQFARQKAMTLI 200 +D+ + I E I + + K +I Sbjct 519 VDVHSEKLIQESIGRLMKNKTSFII 543 Lambda K H a alpha 0.321 0.137 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 25170992 Query= gi|13508156|ref|NP_110105.1| transport system permease protein P69 [Mycoplasma pneumoniae M129] Length=542 Score E Sequences producing significant alignments: (Bits) Value gi|12045146|ref|NP_072957.1| transport system permease protein P6... 610 0.0 >gi|12045146|ref|NP_072957.1| transport system permease protein P69 [Mycoplasma genitalium G-37] Length=543 Score = 610 bits (1574), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/542 (57%), Positives = 403/542 (74%), Gaps = 0/542 (0%) Query 1 MTSLFFYQISDKQKRWNWYWKLALAIIVLVVIIYSFIDNFSGFNVSGFRNFSRNFIRLFT 60 +T LFF+Q+ D +KR WYWKL + I VL ++IYS+IDNFS FN G F N LFT Sbjct 2 ITKLFFHQVGDNKKRLIWYWKLLIIIAVLAIVIYSWIDNFSSFNQFGLNVFINNITSLFT 61 Query 61 PDTARDYFLGSYLLQTIFYVVSGSILGFVIALWFSYLTAFKIQPLYIALPTRLFTIFLRS 120 P+ +Y L +L QT F+V GS LGF+ A+ FSY TAFKIQP YIALP RL TI LR+ Sbjct 62 PNLNHEYTLVRFLAQTAFFVTGGSFLGFIFAILFSYWTAFKIQPFYIALPIRLITIVLRA 121 Query 121 FPVLVFAFLFNNLFNKQLTATLTITWFSWLWSTKYITAFFENSALKQFFNQSSRYIHKFK 180 FPVL+F FLF+NLFNKQL ATLTI+WFS+LW+TKYIT FFENS LK FFN+ R FK Sbjct 122 FPVLLFGFLFSNLFNKQLAATLTISWFSFLWNTKYITTFFENSNLKYFFNKKIREGSGFK 181 Query 181 AFWNTVVISQAERLWLFLLYSLEANFRWTTVLSIAGITGIGELIATPLGGTVQLNLVLIP 240 AFW T+ +S+ ERLWLF LYSLEANFRWTT+LSI GI GIG+LI PL VQ +LVLIP Sbjct 182 AFWTTIFLSENERLWLFFLYSLEANFRWTTLLSIFGIGGIGQLIVDPLSIRVQFDLVLIP 241 Query 241 MLTLIGFLLFLEASVFLLTKFVLQKQSQAGDYFLQAKTLQKRKWKKVMIYILALVLAAFT 300 ++ LI FL+F+E VFLL+ FV +K S+ L+ ++KRKWK+++ + +VL + + Sbjct 242 LVVLITFLIFIEVVVFLLSSFVFEKNSEDLRPILKTTVIEKRKWKRIIFILFIVVLISLS 301 Query 301 LANLVQLDYTVKAPGFVADFFKQFFQTKTAFLISEDANINPLLMLLKLTTQAISLITLVF 360 LANLV +DY + F+ DFF QFFQ K+ S D NINP+LML+KLTTQAISLI+LV Sbjct 302 LANLVTIDYRINDAEFLQDFFNQFFQLKSNLFSSNDPNINPILMLVKLTTQAISLISLVV 361 Query 361 VLALLFGFLASKLFSTITSISLKLLLLVIRVIPSVLLFRLFDPIIFRPETTIIFVLAIHS 420 + ++LFGF++ LF SIS K+LLL +RV+PS+LLFRL DP+ +TTII VL I+ Sbjct 362 IFSILFGFISCNLFKKRFSISFKILLLFVRVVPSILLFRLLDPLFLEAKTTIILVLLINH 421 Query 421 AASYGQLITINFDNANEGVINNMQNHGFSRFYILWNYLIPTTKPQLLNTLSDSFDNAIRD 480 +SYGQL++INF+ AN+ +INN +NHG ++ +ILWNYL+ KP L+N SD++D+ IRD Sbjct 422 GSSYGQLMSINFNKANQNIINNYKNHGMTKGFILWNYLLVENKPNLINITSDAYDSVIRD 481 Query 481 LVVFGIFGGSIIGGRINNFFERAQYSELGTITLPLMVYLMVFEVILMAVRLNKLKVWQRH 540 L++FG FGGSIIG RI NFFERAQ+ LG++T+PLMVYL+ E+I ++VRL ++ V++ + Sbjct 482 LILFGSFGGSIIGSRITNFFERAQFDNLGSVTIPLMVYLIAIEIIFLSVRLTRISVFKNY 541 Query 541 LW 542 L+ Sbjct 542 LY 543 Lambda K H a alpha 0.332 0.144 0.437 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 65206743 Query= gi|13508157|ref|NP_110106.1| hypothetical protein MPN419 [Mycoplasma pneumoniae M129] Length=140 Score E Sequences producing significant alignments: (Bits) Value gi|12045147|ref|NP_072958.1| hypothetical protein MG291.1 [Mycopl... 171 4e-58 >gi|12045147|ref|NP_072958.1| hypothetical protein MG291.1 [Mycoplasma genitalium G-37] Length=138 Score = 171 bits (434), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 82/134 (61%), Positives = 102/134 (76%), Gaps = 0/134 (0%) Query 1 MQYILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIV 60 M+YIL IDFGLK+IGTA+ NT+D++PS F VF V+NN + AVN LF +K GYEL +IV Sbjct 1 MKYILAIDFGLKKIGTAIANTLDKYPSAFHVFEVKNNFKTAVNNLFLRIKNDGYELEKIV 60 Query 61 IGFPHFHYQSSIQVSIHKFVELIKTRFNVPVTLIDESGTTSEVKANLQELGLKNRTFKKA 120 IGFP FHY S IQ +I F +L++ RFN+P+ L+DES TTS VK L + LK++ FKKA Sbjct 61 IGFPKFHYYSDIQKAIKSFKQLLEKRFNLPIILVDESNTTSAVKDKLITMDLKHKDFKKA 120 Query 121 KDTLAATLILERFL 134 KDTLAA LILERF Sbjct 121 KDTLAAVLILERFF 134 Lambda K H a alpha 0.323 0.138 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11381838 Query= gi|13508158|ref|NP_110107.1| alanyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=900 Score E Sequences producing significant alignments: (Bits) Value gi|12045148|ref|NP_072959.1| alanyl-tRNA synthetase (alaS) [Mycop... 1284 0.0 >gi|12045148|ref|NP_072959.1| alanyl-tRNA synthetase (alaS) [Mycoplasma genitalium G-37] Length=900 Score = 1284 bits (3323), Expect = 0.0, Method: Compositional matrix adjust. Identities = 612/897 (68%), Positives = 728/897 (81%), Gaps = 1/897 (0%) Query 1 MKWTTDKVRQTWLDYFTAKGHLALPSKSLIPVNDPSLLWINSGVATLKDYFSAKKTPPSK 60 M WTTDKVRQTWLDYF K HL L SKSLIP+NDPSLLWINSGVATLKDYFSA+KTPPSK Sbjct 1 MNWTTDKVRQTWLDYFAKKDHLVLASKSLIPINDPSLLWINSGVATLKDYFSARKTPPSK 60 Query 61 RLANAQICLRVNDIENVGFTSRHQTLFEMLGNFSIGDYFKEEAIGFANDLLVNHYHLDPK 120 RL NAQICLRVNDIENVGFTSRHQTLFEMLGNFSIGDYFK EAI FA DLLVN+Y LDPK Sbjct 61 RLVNAQICLRVNDIENVGFTSRHQTLFEMLGNFSIGDYFKTEAIDFAFDLLVNYYQLDPK 120 Query 121 RFYITVYQDDELTFNTWLKHGIPASRIIKCDRDRNFWDLGLGPCGPCTEIYYDRGERFDP 180 RFYITVY+DDE T+ W+KH I + IIKCD+ RNFWDLGLGPCGPCTEIYYDRGE+FDP Sbjct 121 RFYITVYEDDETTYKRWIKHKIDKNHIIKCDKSRNFWDLGLGPCGPCTEIYYDRGEKFDP 180 Query 181 HKVGEKLFFEDIENDRYVEVWNIVFSQFNNDGNGNYSELAQKNIDTGAGIERLVAILQDA 240 K+GEKLFFEDIENDRYVE+WNIVFSQFNNDGNGNY+ELAQKNIDTGAGIERLV++LQ++ Sbjct 181 KKIGEKLFFEDIENDRYVEIWNIVFSQFNNDGNGNYTELAQKNIDTGAGIERLVSVLQNS 240 Query 241 PTNFDTDIFLKLIGIIEQHCKHKYDTNLYFKFDQKLNEAQSAFRIISDHFKAITFTIAEG 300 PTNFDTDIFLKLI IIE C KYD N YF FD + + QS FRII+DHFKAITFTI+EG Sbjct 241 PTNFDTDIFLKLIKIIEAFCPFKYDPNSYFTFDPQKVKEQSYFRIIADHFKAITFTISEG 300 Query 301 VLPGPNERSYIVRRLLRRALLACKKLDLDLKFIDPMVDAIISVYGSYYQQLQGKNQVVQQ 360 VLPGPNER+Y+VRRLLRRAL+ACKKL L+L FI+ ++D II+ Y +YYQ L+ KN+ V+Q Sbjct 301 VLPGPNERNYVVRRLLRRALIACKKLQLNLAFIEKIIDEIIASYENYYQHLKAKNETVKQ 360 Query 361 AIWKEVTAFDKTINLGLMLFEKSIAHNALQPQVAFQLYETYGFPIEMIKELVDKRQLQVD 420 + KE+ AF+KTI+LGL+LFEKS+ +N L PQ+ FQL ETYGFP+E+I+ELV+++ L +D Sbjct 361 VVLKEINAFNKTIDLGLVLFEKSVKNNTLTPQLTFQLNETYGFPVEIIRELVNQKGLTID 420 Query 421 WKAVEQLMEQHRLISKQNSNTLSFEKQNEHLVNFKTASEFLYEANEITAKVIGLFDEQYQ 480 W +QLM +HR ISKQN+ T++FEKQN +LVNFKT S F Y N+I AKVIGLFDE Y Sbjct 421 WTVFDQLMAKHRSISKQNNQTINFEKQNINLVNFKTKSTFFYHKNKINAKVIGLFDENYL 480 Query 481 PVQKLHNQSGYVVFDQTVLYATSGGQRYDEGYCINHS-QNDQRVSFQGVFKGPNKQHFHF 539 PV++L+NQSGYVVFDQTVLYATSGGQRYDEG CINHS NDQ++SFQGVFKGPNKQHFH+ Sbjct 481 PVKELNNQSGYVVFDQTVLYATSGGQRYDEGSCINHSNNNDQKISFQGVFKGPNKQHFHY 540 Query 540 FLTGSFQLGDKVILVHDGKWRQLVKNNHSLEHLLHAALQNEIDPLIKQDGAFKSAQKATI 599 FL GSF+L D+V L HD WR+L NNHSLEHLLHAALQ EIDPLIKQ GAFKSAQKATI Sbjct 541 FLVGSFKLNDQVTLSHDETWRKLAANNHSLEHLLHAALQKEIDPLIKQSGAFKSAQKATI 600 Query 600 DFNFSRALTWAELERVEHRIRQIIQQDIQREEIFTDLEGSQKLNAIAYFEEEYSNHELLR 659 DFN +R LT ELE+VE++IR +I+Q I +EIFTD EGSQKLNAIAYFEEEYS HE+LR Sbjct 601 DFNLNRHLTRNELEKVENKIRSLIKQKISSKEIFTDFEGSQKLNAIAYFEEEYSQHEILR 660 Query 660 VIRFGDFSVELCGGTHVEHTGLIENCFITDYYARGTGRWRIEIISSNETIAAYLNEQNGK 719 VIRFGD+SVELCGGTHV +T IE+CFITD+Y+ G GRWRIEIISSNETI YL +N K Sbjct 661 VIRFGDYSVELCGGTHVANTASIEDCFITDFYSLGAGRWRIEIISSNETINNYLKAENQK 720 Query 720 LSETINSLHNTLNNIANPALNKQKTALTKQLNHFHLPQVITDLRKCQALLNELKITVNEL 779 L + + L L+ I + + L ++L+ F LP+ IT LR L LK +N+L Sbjct 721 LIQLKSELEKVLSLIDSSIFKVELKELQQRLDKFILPEKITQLRDASDTLLALKNDINQL 780 Query 780 KTEDFKWKQKQLAEKIKQELLELAKQDKAYVLASFAAVDPKLLSQVAQAVLNQHKNKLFV 839 KT+++K Q+ LA IK++LL L ++K+YV+A+F V+PKLL Q V NQ++ K F+ Sbjct 781 KTKNYKVSQQALALSIKKQLLSLVDENKSYVIATFNDVEPKLLLQTLHDVFNQNQTKNFL 840 Query 840 LLNQFNNSPSFMLLGQDVSKCIQLLKAHFELKGGGSNNFFRGSFNESVDVSKLQAIL 896 ++NQFN S SF+++G + I+ L+ F LKGGG++ FRGSF ++V KL + Sbjct 841 IINQFNESNSFIVIGNKTTTIIEKLRNSFNLKGGGNDKLFRGSFQDNVTPQKLNELF 897 Lambda K H a alpha 0.320 0.136 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 113045953 Query= gi|13508159|ref|NP_110108.1| glycerophosphoryl diester phosphodiesterase [Mycoplasma pneumoniae M129] Length=241 Score E Sequences producing significant alignments: (Bits) Value gi|12045149|ref|NP_072960.1| glycerophosphoryl diester phosphodie... 340 2e-121 gi|12045247|ref|NP_073058.1| hypothetical protein MG385 [Mycoplas... 119 1e-34 >gi|12045149|ref|NP_072960.1| glycerophosphoryl diester phosphodiesterase, putative [Mycoplasma genitalium G-37] Length=244 Score = 340 bits (873), Expect = 2e-121, Method: Compositional matrix adjust. Identities = 161/241 (67%), Positives = 197/241 (82%), Gaps = 0/241 (0%) Query 1 MLKRQLLLAHRGYSDIAPENTQLAFELAFQYRFDGVELDVHLTKDGELVIIHDETTTRTA 60 M +QLLLAHRGYS IAPENT+LAF+LAF+Y FDG+ELDVHLTKD +LVIIHDETT RTA Sbjct 1 MHNKQLLLAHRGYSFIAPENTKLAFDLAFEYCFDGIELDVHLTKDEQLVIIHDETTLRTA 60 Query 61 LVDKTIELETLASLKQDDHSAFFKFKTQPQPIMTLKEFFDQYLDKFQLINVEIKTDQKEY 120 LV+K +E E+L SLK+DDHSAFF K Q Q I+TLKEF D YLDKF+LIN+EIKTDQK Y Sbjct 61 LVNKEVEFESLVSLKRDDHSAFFHLKIQFQSILTLKEFLDLYLDKFKLINIEIKTDQKPY 120 Query 121 PGIEAKIDALAQQYGKKVIEKVVFSSFNFASLQRLYDINPNYQIAFLFWTKKQFQAVDAL 180 GIE K+ L + YGKK I+K++FSSFNF SLQ++YD++ +Y+ FLFWTKKQF+ + Sbjct 121 LGIEKKLVDLVKGYGKKAIDKILFSSFNFESLQKVYDLDNSYKKGFLFWTKKQFETISTA 180 Query 181 KIKQVCQYLHPWTNIYEKFPDMVLSLQLPLGLWTLNSEVKFHQFRQDRMVYAQIANKKFE 240 +I+++CQ+LHPWT IYEK+P M+ L LPL LWT+NS+ KF QF D VYAQIANKKFE Sbjct 181 RIQKICQFLHPWTKIYEKYPQMIKKLNLPLNLWTVNSQNKFQQFLADNHVYAQIANKKFE 240 Query 241 V 241 + Sbjct 241 I 241 >gi|12045247|ref|NP_073058.1| hypothetical protein MG385 [Mycoplasma genitalium G-37] Length=236 Score = 119 bits (298), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 128/236 (54%), Gaps = 6/236 (3%) Query 2 LKRQLLLAHRGYSDIAPENTQLAFELAFQYRFDGVELDVHLTKDGELVIIHDETTTRTAL 61 +++Q L+A+RGYS IAPENT+LAF+ A + FDG+ +D+ LTKD ++V+ H E + Sbjct 1 MRKQFLIAYRGYSSIAPENTKLAFQAAQVFDFDGIWIDIQLTKDKQIVVTHKENFKVS-- 58 Query 62 VDKTIELE--TLASLKQDDHSAFFKFKTQPQPIMTLKEFFDQYLDKFQLINVEIKTDQKE 119 +K + L L LK+ + ++ FK K Q I TLKE Q++ F+ + + IK D++ Sbjct 59 -NKNLNLNQINLVDLKKVNLASEFKLKVTSQQIQTLKEVLTQFIQPFKYLLIHIKDDKEN 117 Query 120 YPGIEAKIDALAQQYGKKVIEKVVFSSFNFASLQRLYDINPNYQIAFLFWTKKQFQAVDA 179 + +++ L + + EK++ S NF ++ + + ++ F+ KK Sbjct 118 NNSLLEQLNLLCKDFV-LAKEKMILLSSNFHIIKLINETFKGFKTGFVIANKKALLVASR 176 Query 180 LKIKQVCQYLHPWTNIYEKFPDMVLSLQLPLGLWTLNSEVKFHQFRQDRMVYAQIA 235 ++ + C++L P + Y K + +L LP+ LW + +++ + DR V QI Sbjct 177 DELMRYCRFLVPNESFYHKNCKEIQNLGLPVILWVIKGLLRYQFYENDRFVKFQIT 232 Lambda K H a alpha 0.323 0.137 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24741941 Query= gi|13508160|ref|NP_110109.1| permease [Mycoplasma pneumoniae M129] Length=475 Score E Sequences producing significant alignments: (Bits) Value gi|12045150|ref|NP_072961.1| hypothetical protein MG294 [Mycoplas... 722 0.0 >gi|12045150|ref|NP_072961.1| hypothetical protein MG294 [Mycoplasma genitalium G-37] Length=474 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/475 (78%), Positives = 412/475 (87%), Gaps = 3/475 (1%) Query 1 METKLSLKKRLQQFSKKQLIALIILGAADVFVIAAPYYIKNVVPNLHLYLGITEDEVATL 60 + TK KKRL+ FSK+Q++ALIILGA DVFVIAAPYY+KNVVPNLHLYLGITEDEVAT+ Sbjct 3 VTTKKGFKKRLKDFSKQQILALIILGAIDVFVIAAPYYVKNVVPNLHLYLGITEDEVATV 62 Query 61 TSIIGYVTLATQLPGGFLANRFSSRKLLFLSEISTGVITFWLATNILTRESQKSNALFVQ 120 TSIIGYVTLATQLPGGFL NRFSSRKLLFLS I+TG ITFWLA NILT+ Q +ALF+Q Sbjct 63 TSIIGYVTLATQLPGGFLTNRFSSRKLLFLSAITTGAITFWLAANILTKNQQSHDALFIQ 122 Query 121 YCVIWGLWGITSTLIFWTPLWKLASQQATQENQALGFGIQGAANGVWGFIFIFLIALIIT 180 YCVIWGLWGITSTLIFWTPLWKLASQQAT+ENQALGFGIQGAANG+WG IFIFLIALIIT Sbjct 123 YCVIWGLWGITSTLIFWTPLWKLASQQATKENQALGFGIQGAANGIWGLIFIFLIALIIT 182 Query 181 AVAYPAGGESSANNPAPFAIYAFIIGGMLLVTGFTVLFFVPEKPIEKYDSHTSLKTAKKN 240 ++ YP+GG +A++ PFA YAFII ML++TGFTVLFFV EKPIEK S T+L + K+N Sbjct 183 SIFYPSGGSENADSK-PFAAYAFIIAIMLVITGFTVLFFVKEKPIEK-QSQTTLVSFKRN 240 Query 241 FEQILITLKNWKLWLLSFFLMGMYVFQSTFAYYLLQMMQNAFLAPVILGTVLGGVRTYVL 300 QIL+TLKNWKLWLLSFFLMGMYVFQSTFAYYLLQM+QNAFLAPV+L TV+GG+RTY L Sbjct 241 LNQILVTLKNWKLWLLSFFLMGMYVFQSTFAYYLLQMLQNAFLAPVVLVTVIGGIRTYAL 300 Query 301 RSAVSVYLGRLADKFRSYILFLMLCTGLGIIFVLMFILLGFGQVGQQQNYALIIVSAILY 360 RSAVSVYL RLADK +SYILFLM+CT LGI+FVL FILLGF Q N LI S+ILY Sbjct 301 RSAVSVYLCRLADKCKSYILFLMICTVLGIVFVLAFILLGFVQT-NSANITLITFSSILY 359 Query 361 ILTGVLSWGMVTVRYNQVAEIEIGKNNYASSVGLLSFIGFSTDGWLYTVTSVVGKAYTPD 420 I TG+LSWGMVTVRYNQ+ EI+IGKNNYASSVGLLSFIGFSTDGWLYTVT+ VGK YT Sbjct 360 IFTGILSWGMVTVRYNQIGEIDIGKNNYASSVGLLSFIGFSTDGWLYTVTAEVGKKYTVA 419 Query 421 GQKNTSIQGYQIIAAICLGIALFGLLCGTIVFLVNTWELKRLGKTDYRWRTLDNA 475 GQ NTS GYQIIAAICL IALFGL+CG+IVF+ N+ E+KRL K YRWR LDNA Sbjct 420 GQSNTSNTGYQIIAAICLSIALFGLICGSIVFISNSMEIKRLNKASYRWRDLDNA 474 Lambda K H a alpha 0.327 0.141 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56185313 Query= gi|13508161|ref|NP_110110.1| TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE. [Mycoplasma pneumoniae M129] Length=370 Score E Sequences producing significant alignments: (Bits) Value gi|12045151|ref|NP_072962.1| hypothetical protein MG295 [Mycoplas... 488 7e-176 >gi|12045151|ref|NP_072962.1| hypothetical protein MG295 [Mycoplasma genitalium G-37] Length=367 Score = 488 bits (1257), Expect = 7e-176, Method: Compositional matrix adjust. Identities = 229/362 (63%), Positives = 282/362 (78%), Gaps = 0/362 (0%) Query 4 KTVFVGISGGVDSAVSALLLKQQYREVIGIFMECWDNTLNNDQLGHRAFNEHKSGCSSKE 63 KTVF+G+SGGVDSAVSALLLK+QY+EVIG+FMECWD TLNND GH+ N +KSGCSS + Sbjct 6 KTVFIGLSGGVDSAVSALLLKKQYQEVIGVFMECWDETLNNDFYGHKKINNNKSGCSSFQ 65 Query 64 DFREAQAIAQLLGIKLIKQNLVEPYWKQVFLPTIDAFKNGLTPNPDMLCNRLIKFGLMRD 123 DF++A+ IA LGIKLIK+NL+E YW +VFLP I +FK GLTPNPD+ CNR IKFGL+ D Sbjct 66 DFQQAKKIANSLGIKLIKKNLIEAYWNKVFLPMIQSFKKGLTPNPDIWCNRFIKFGLLHD 125 Query 124 YCKQLDPNSDFATGHYAALSWDNNQPLLAIPKDKHKDQTYFLAHVKPAQLQDVVFPLAHL 183 +CKQ++PNS FATGHYA ++ NQPLL+IPKD +KDQTYFLA+VK Q Q+V+FPLA L Sbjct 126 FCKQINPNSLFATGHYAKINMIENQPLLSIPKDTNKDQTYFLANVKKEQFQNVIFPLADL 185 Query 184 LKTEVRQIALAHHFSVATKKDSTGICFIGERHFSDFLKNYLPVKPGVIYDWKTQRQLGSH 243 K VR IA +++ VA KKDSTGICFIGERHFSDFLKNYLPVK G+I DWKT++ + H Sbjct 186 KKITVRNIARENNWEVADKKDSTGICFIGERHFSDFLKNYLPVKKGLIKDWKTKQTISEH 245 Query 244 EGVWFYTTGQRSGLNLGGQAARNFVVEKDLKTNTLYVSSDPEDLQRRGITLSHFNWLYQP 303 +GVWFYT GQRSGLNLGG R+FVV KD++TN L+VS D E+L + I L FNWLY P Sbjct 246 DGVWFYTIGQRSGLNLGGLKQRHFVVAKDIETNELFVSCDKEELLKTTILLDQFNWLYTP 305 Query 304 NPLTQTVLVRIRHAQPLVQGHITVQPNNVVQVQLDQPIDRVTNGQYGVLYTQNGICLGSG 363 L VLVRIRHAQ + + +N +++ P+ V +GQ+GVLYT + ICLG+G Sbjct 306 KQLPSQVLVRIRHAQKPEIAKLKLLSDNKLEITFKNPVISVASGQFGVLYTLDQICLGAG 365 Query 364 II 365 +I Sbjct 366 LI 367 Lambda K H a alpha 0.321 0.137 0.421 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 42042138 Query= gi|13508162|ref|NP_110111.1| hypothetical protein MPN423 [Mycoplasma pneumoniae M129] Length=129 Score E Sequences producing significant alignments: (Bits) Value gi|12045152|ref|NP_072963.1| hypothetical protein MG296 [Mycoplas... 187 1e-64 >gi|12045152|ref|NP_072963.1| hypothetical protein MG296 [Mycoplasma genitalium G-37] Length=129 Score = 187 bits (475), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 86/129 (67%), Positives = 105/129 (81%), Gaps = 0/129 (0%) Query 1 MKPQLLALKQFVQTEFEKVDFETFRQNFNRCLEREQSTLLIYEDDDYDDQSFFLKPMLSD 60 MKPQL+A K+F+QTEF+ VDFETFR NFN CL+REQ ++IYEDDDYDDQ FF KPMLSD Sbjct 1 MKPQLIAFKKFLQTEFQAVDFETFRINFNLCLKREQDNIVIYEDDDYDDQPFFFKPMLSD 60 Query 61 AFFISSEVVKQLDLLAVLVDNPKGDVKSCCQSFYEALTLFISALAITKGVDVGRYHQQLG 120 FFI +EV+KQLD LA +V+NPK + CCQ+FYEAL +FISALAITKG++ R+HQ+L Sbjct 61 GFFIQTEVIKQLDYLAKVVENPKDSDQQCCQNFYEALIVFISALAITKGINPNRFHQRLV 120 Query 121 KRFGVLTVY 129 RF + VY Sbjct 121 NRFAIHAVY 129 Lambda K H a alpha 0.325 0.140 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9955540 Query= gi|13508163|ref|NP_110112.1| hypothetical protein MPN424 [Mycoplasma pneumoniae M129] Length=102 ***** No hits found ***** Lambda K H a alpha 0.324 0.137 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6505708 Query= gi|13508164|ref|NP_110113.1| cell division protein FtsY [Mycoplasma pneumoniae M129] Length=348 Score E Sequences producing significant alignments: (Bits) Value gi|12045153|ref|NP_072964.1| cell division protein (ftsY) [Mycopl... 511 0.0 gi|12044898|ref|NP_072708.1| signal recognition particle protein ... 100 2e-25 >gi|12045153|ref|NP_072964.1| cell division protein (ftsY) [Mycoplasma genitalium G-37] Length=346 Score = 511 bits (1316), Expect = 0.0, Method: Compositional matrix adjust. Identities = 239/332 (72%), Positives = 293/332 (88%), Gaps = 0/332 (0%) Query 1 MSFIHKLIQKFKPKKKLVDQVQQAVQEKSFFQANQKSYYQGLNKSANSFANTINKLAANY 60 M F+ KLI K KPKK + Q+++ V+++S FQ N K+YYQGL KSA +FA TIN+L+ Y Sbjct 1 MGFLSKLIAKLKPKKSVAKQLKEEVEKQSLFQTNNKTYYQGLKKSATTFAKTINELSKRY 60 Query 61 VTVNEQFQESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEIIVDKLIVYYI 120 V V+EQF+E+LFE LVLLD+GYHAA KICDAI++++KL R++D QLI+E+I+D++IVYYI Sbjct 61 VNVDEQFKENLFEGLVLLDVGYHAANKICDAIIEQIKLNRITDFQLIKELIIDQIIVYYI 120 Query 121 QDKLFETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAV 180 QDKLF+TDL V+ N TNVYLFVGVNGVGKTT+LAK+AD KQNKRVL+VAGDTFRAGA+ Sbjct 121 QDKLFDTDLIVKPNFTNVYLFVGVNGVGKTTTLAKIADFFIKQNKRVLLVAGDTFRAGAI 180 Query 181 AQLAEWAQRIGCDIVLPNPKEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNEL 240 QL +WA+ + CDIVLPNPKE+TPAVIFRGV++GI ++YDFVLCDTSGRLQNK NLMNEL Sbjct 181 EQLNQWAKLLNCDIVLPNPKEQTPAVIFRGVKKGIDDKYDFVLCDTSGRLQNKLNLMNEL 240 Query 241 KKIYQIVQKVSSAKPQETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGII 300 +KIYQI+QKVS ++P ETLLVLDGT GQ+GL+QAKVFNEF++LTGI+LTKMD S+KGGII Sbjct 241 QKIYQIIQKVSGSEPSETLLVLDGTVGQTGLSQAKVFNEFSKLTGIVLTKMDGSAKGGII 300 Query 301 LAIKDLFNLPVKLIGFGETTADLAAFDLEQYV 332 LAIKD+FNLPVKLIGFGE T+DLA FDLE+YV Sbjct 301 LAIKDMFNLPVKLIGFGEKTSDLAIFDLEKYV 332 >gi|12044898|ref|NP_072708.1| signal recognition particle protein (ffh) [Mycoplasma genitalium G-37] Length=446 Score = 100 bits (250), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 109/214 (51%), Gaps = 15/214 (7%) Query 140 LFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAG-DTFRAGAVAQLAEWAQRIGCDIVL-- 196 + VG+ G GKTT+ KLA L K+ K+ M+ G D +R A+ QL +Q+ Sbjct 103 MMVGLQGSGKTTTCGKLAYWLEKKYKQKTMLVGLDIYRPAAIEQLETLSQQTNSVFFAQG 162 Query 197 PNPKEETPAVIFRGVQQGIQNEYDFVLCDTSGRLQNKTNLMNELKKIYQIVQKVSSAKPQ 256 P +T + + ++CDT+GRLQ LM+EL V + P Sbjct 163 TQPVAKTTKAALSAFKTA---KCQTIICDTAGRLQTNETLMDEL------VSVKNELNPD 213 Query 257 ETLLVLDGTTGQSGLAQAKVFNEFTELTGIILTKMDSSSKGGIILAIKDLFNLPVKLIGF 316 E ++V+DG +GQ + A+ F++ +LTG I++K+DS ++ G L++ L +P+KLIG Sbjct 214 EIIMVVDGLSGQEIINVAQTFHKRLKLTGFIISKLDSDARAGAALSLASLLQVPIKLIGV 273 Query 317 GETTADLAAFDLEQ---YVLGLTKNLSLNHEPNQ 347 E L F E+ +LGL +SL + Q Sbjct 274 SEKLDGLEQFHPERIANRILGLGDVMSLVEKAEQ 307 Lambda K H a alpha 0.317 0.134 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39213505 Query= gi|13508165|ref|NP_110114.1| SMC family, chromosome/DNA binding/protecting functions [Mycoplasma pneumoniae M129] Length=982 Score E Sequences producing significant alignments: (Bits) Value gi|12045154|ref|NP_072965.1| P115 protein [Mycoplasma genitalium ... 1441 0.0 >gi|12045154|ref|NP_072965.1| P115 protein [Mycoplasma genitalium G-37] Length=982 Score = 1441 bits (3729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 717/982 (73%), Positives = 832/982 (85%), Gaps = 0/982 (0%) Query 1 MVFLKRFRAYGFKSYADEITINFTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSK 60 MVFLKRFRAYGFKSYADEITI+FTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSK Sbjct 1 MVFLKRFRAYGFKSYADEITIDFTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSK 60 Query 61 SGDDMIFFGSKDKPASKLAEVELTFDNSQKLLHDPRPEISVMRRIYRGSGQSEYYINGEL 120 SGDDMIFFGSKDKPASKLAE+ELTFDNS +LLHD R EISVMRR+YRGSGQSEY+IN Sbjct 61 SGDDMIFFGSKDKPASKLAEIELTFDNSNRLLHDSRKEISVMRRVYRGSGQSEYFINSNP 120 Query 121 VTLKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFEDASGIGRYTKRKEEVT 180 TLKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFEDASGIGRYTKRKEEV Sbjct 121 ATLKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFEDASGIGRYTKRKEEVV 180 Query 181 NQLARTVQNLKQVSIVLNELKKDLKKLTIQADKAQRFVKLKEELKELELSVLVADYLKSQ 240 NQL RT+ NLKQVS+VLNELKKDLKKLT+QA+KAQ+F+++K ELKELEL+VLV +YL++Q Sbjct 181 NQLNRTLINLKQVSVVLNELKKDLKKLTLQAEKAQQFIRVKNELKELELAVLVGEYLQAQ 240 Query 241 GELDRFNHQIGYIEQDFKLHEPQLQLLEDQLNIFNQRFRDADEQSIKLQQELQAVYQTIN 300 ELD+FN QI E DFK+HEPQL+LLE+Q+ IFN RF AD QS +LQ+ELQ +YQ IN Sbjct 241 TELDKFNFQINSSEHDFKIHEPQLELLEEQIVIFNSRFHSADMQSNELQKELQDIYQKIN 300 Query 301 ELEQRKAVIDVQLKNELSKKDEKHKIQALKKLIRVDQAQLESLQAQVLKTTSEITLLTNE 360 ELEQRK +IDVQL+ S+KDEK K ALKKLI VDQ QL+ + Q+ + + IT L Sbjct 301 ELEQRKVIIDVQLRQGFSQKDEKQKAAALKKLILVDQTQLDGFENQLSNSKTTITDLEKL 360 Query 361 LSTVQTELDTTKLNLNQNSAALVYQQAQQEFLKAQNEEWVKTNPAHVLVKNVKALTGLLN 420 ++ ++ +D KL + +N+A L+YQ++ + ++ Q E KTN A++LVKN ALTG+LN Sbjct 361 INEQKSLVDQIKLQIEKNTADLIYQRSLKTIIELQTNELKKTNNANILVKNANALTGILN 420 Query 421 TLNTFLKFEKQYEKALLKALGKSIGYLVVNNNLAALKAIDFLLTNQIGQVTFLPIDDIAF 480 TL TFLKF+KQYEKA+LKALGKSIGYLVVNNN AA++AIDFL+ N+IG+VTFLP+DD+A Sbjct 421 TLGTFLKFDKQYEKAILKALGKSIGYLVVNNNNAAIQAIDFLVKNEIGKVTFLPLDDVAS 480 Query 481 DTKIAPEHMEILQQLDGFLGVGSDHVSCDESLQPIVNALLGQVIIASDLQAALKLSSYTY 540 DTKI EHMEIL+QLDGFLGV SDHV CD QP+VN LL QVIIA DL +A+ LS+YTY Sbjct 481 DTKITNEHMEILKQLDGFLGVCSDHVKCDPLFQPVVNTLLAQVIIAKDLNSAINLSNYTY 540 Query 541 KLYRVVTLNGETVYAGGIIQGGYVKDNLSLYNLQEKLASSEANITQLEHNEKQLRTNLTS 600 KLYR+VTL+GETVYAGGII GG+ K NLS L +E NI +LE+NE++L+ LT Sbjct 541 KLYRIVTLDGETVYAGGIINGGFEKTNLSDGYLSSASLDNEQNINKLENNERELKKELTE 600 Query 601 LETKLNELNKKLKYEEILLEKFNERVNHTNKAILSYKIEYEQLTNESFDGTPHSFDETRL 660 LE KL+E+N+KLKYEE+L KF ER+ K IL K+EYEQLTN +FDG E L Sbjct 601 LEVKLDEMNRKLKYEELLQAKFIERIVQIKKIILELKMEYEQLTNTTFDGKKAVASEAEL 660 Query 661 VESLNRAWAERDELNSQLKLNQELKETLAKSIKLAEAKTADLRALLDEQRSQLVLAREGK 720 + SLN AWA+RDE+NS+LKLNQELK LAK+IK +E K DLRALLDEQR++LV AREGK Sbjct 661 IHSLNSAWAKRDEINSKLKLNQELKLQLAKTIKQSEEKIVDLRALLDEQRAKLVSAREGK 720 Query 721 IRFENTIHNITDKINGGYKLTMEFAIANYNKPIKLSTMQAQNKIARMQSQLDEMGPINLE 780 IRFENTI NIT+KIN YK+TMEFAIAN+NKP+KLS+MQA NKIA++Q+QL+EMG IN+E Sbjct 721 IRFENTIQNITEKINSVYKMTMEFAIANHNKPVKLSSMQAHNKIAKLQNQLNEMGVINME 780 Query 781 SIAEIADKQKRFDDINGEYESLQTAIKDLQTAIGEIDELACKEFDELIQKVNAELPKTFN 840 SIAEI++KQKRFDDIN EYES Q A+++LQ AI EIDE+A EFD+LIQK+N ELPKTF Sbjct 781 SIAEISEKQKRFDDINAEYESAQQAVENLQKAITEIDEIASNEFDQLIQKLNQELPKTFK 840 Query 841 YLFGGGSCQIRYTDTDNVLLSGIEVFANPPGKNVANLMLLSGGEKTLVALSVLFSILRVS 900 YLFGGGSCQIRYTD NVL+SGI+VFANPPGKN+ANLMLLSGGEKTLVALSVLFSIL+VS Sbjct 841 YLFGGGSCQIRYTDPSNVLVSGIDVFANPPGKNIANLMLLSGGEKTLVALSVLFSILKVS 900 Query 901 AFPLVILDEAESALDPANVERFANIIGNSSNNTQFLIITHRQGTMMKCDMLLGAAMQTKG 960 AFPLVILDEAESALDPANVERFANII +S NTQFLIITHRQGTMMKCDMLLGAAMQTKG Sbjct 901 AFPLVILDEAESALDPANVERFANIIKTASKNTQFLIITHRQGTMMKCDMLLGAAMQTKG 960 Query 961 VTKTFAVSLEKAEQYISKDKQN 982 VTKTFAV LE AE+Y+S++ N Sbjct 961 VTKTFAVELENAEKYVSENDSN 982 Lambda K H a alpha 0.315 0.132 0.355 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 124336779 Query= gi|13508166|ref|NP_110115.1| hydrolase/phosphatase [Mycoplasma pneumoniae M129] Length=290 ***** No hits found ***** Lambda K H a alpha 0.320 0.136 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31250780 Query= gi|13508167|ref|NP_110116.1| phosphotransacetylase [Mycoplasma pneumoniae M129] Length=320 Score E Sequences producing significant alignments: (Bits) Value gi|12045155|ref|NP_072966.1| phosphotransacetylase (pta) [Mycopla... 530 0.0 >gi|12045155|ref|NP_072966.1| phosphotransacetylase (pta) [Mycoplasma genitalium G-37] Length=320 Score = 530 bits (1366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 249/320 (78%), Positives = 279/320 (87%), Gaps = 0/320 (0%) Query 1 MSVIDLLKQRVQSAGKKPVIIFPEGWSPTVMEAVNQLQQAGILTPPVIFRTRSEVPAGFN 60 MSVID+ K+R+Q+ KKPVIIFPEGWS +V++AV L ++ ++ P VIF R E+PA F+ Sbjct 1 MSVIDIFKKRLQAVSKKPVIIFPEGWSASVLKAVEMLNESKLIQPAVIFHNRQEIPANFD 60 Query 61 TAIKHYVIEEMDLTKYANFVYEKRKHKGMEMREAQKFVRDASSLAATLVALNEVDGEVCG 120 I HYVI+EMDLT YANFVYEKRKHKGM+++EAQKFVRD SSLAATLVAL VDGEVCG Sbjct 61 KKITHYVIDEMDLTSYANFVYEKRKHKGMDLKEAQKFVRDPSSLAATLVALKVVDGEVCG 120 Query 121 KEYATKDTLRPALQLLGTGNFVSSVFIMEKNEERLYFTDCAFAVYPSPQELAVVAENTFK 180 KEYATKDTLRPALQLL TGNFVSSVFIMEK EERLYFTDCAFAVYP+ QELA +AENTF Sbjct 121 KEYATKDTLRPALQLLATGNFVSSVFIMEKGEERLYFTDCAFAVYPNSQELATIAENTFN 180 Query 181 FAQSMGEPELKMVFLSYSTLGSGKGEAVDKVVSATQIFLEKHPELKANVCGELQFDSAFV 240 FA+S+ E E+KM FLSYSTLGSGKGE VDKVV AT++FLEKHPEL +VCGELQFD+AFV Sbjct 181 FAKSLNEDEIKMAFLSYSTLGSGKGEMVDKVVLATKLFLEKHPELHQSVCGELQFDAAFV 240 Query 241 EKVRKQKAPNLTWNGSANIYVFPNLDAGNIGYKIAQRLGGYEAIGPIVLGLARPFNDLSR 300 EKVR QKAP LTW SANIYVFPNLDAGNI YKIAQRLGGY+AIGPIVLGL+ P NDLSR Sbjct 241 EKVRLQKAPQLTWKNSANIYVFPNLDAGNIAYKIAQRLGGYDAIGPIVLGLSSPVNDLSR 300 Query 301 GASVSDVFNVGIITAAQTLK 320 GASVSD+FNVGIITAAQ +K Sbjct 301 GASVSDIFNVGIITAAQAIK 320 Lambda K H a alpha 0.318 0.134 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35512250 Query= gi|13508168|ref|NP_110117.1| phosphoglycerate kinase [Mycoplasma pneumoniae M129] Length=409 Score E Sequences producing significant alignments: (Bits) Value gi|12045156|ref|NP_072967.1| phosphoglycerate kinase (pgk) [Mycop... 581 0.0 >gi|12045156|ref|NP_072967.1| phosphoglycerate kinase (pgk) [Mycoplasma genitalium G-37] Length=416 Score = 581 bits (1497), Expect = 0.0, Method: Compositional matrix adjust. Identities = 286/409 (70%), Positives = 337/409 (82%), Gaps = 1/409 (0%) Query 1 MVDFKTVQAFDFQGKTVVLRADLNVPMKDGVITDNERILASLDTIKYLLGHNCKIVLLSH 60 M++FKT+QA DFQ KTVVLR+D NVPM +GVI+D+ERILA LDTIK+L+ NCKIVLLSH Sbjct 6 MLNFKTLQAIDFQNKTVVLRSDFNVPMINGVISDSERILAGLDTIKFLVKKNCKIVLLSH 65 Query 61 LSRVKSLDDK-KGKKSLQPVASALQNLLKNTKVHFCPENTGDKVKVAVNQLPLGEILVLE 119 LSR+KSL+DK KKSL+PVA LQ LL KV F +NTG +VK V L GEIL+LE Sbjct 66 LSRIKSLEDKLNNKKSLKPVAELLQQLLPTVKVQFSCKNTGAEVKQKVQALAFGEILLLE 125 Query 120 NTRYCDVNEAGEVVKHESKNNAELAQFWASLGDIFVNDAFGTAHRRHASNAGIAKYIKNS 179 NTRYCDVN+ GE+VK ESKN+ ELA+FWASLG+IFVNDAFGTAHR+HASNAGIAKY+ S Sbjct 126 NTRYCDVNDKGEIVKLESKNDPELAKFWASLGEIFVNDAFGTAHRKHASNAGIAKYVAKS 185 Query 180 CIGLLMERELINLYRLINNPPKPFVVVLGGAKVSDKLQVVNNLFKIADHILIGGGMVNTF 239 CIG LME+EL NL LI +P KPFVVVLGGAKVSDKL+VV NL K+AD+ILIGGGMVNTF Sbjct 186 CIGFLMEKELKNLSYLIQSPQKPFVVVLGGAKVSDKLKVVENLLKLADNILIGGGMVNTF 245 Query 240 LKALGNEVGTSLVEEDLVQTAKQILDSDKDKKIVLGVDQMLHASFKDEPGVECVVAPQWP 299 LKA G SLVE++L+ AKQILD D KIVL +DQ++ + FKD+ G+ V+ + Sbjct 246 LKAKGKATANSLVEKELIDVAKQILDKDTHNKIVLAIDQVMGSEFKDQTGITLDVSDKIQ 305 Query 300 AELQGFMSLDVGSKTVALFSSYLAKAKTIFWNGPMGVFEFSNYAQGTLAIGKAIAQNQQA 359 + Q +MSLDVGSKT+ALF SYL AKTIFWNGP+GVFEF+N+A+GT IG+ IA+N+ A Sbjct 306 EQYQSYMSLDVGSKTIALFESYLKTAKTIFWNGPLGVFEFTNFAKGTSKIGEIIAKNKTA 365 Query 360 FSVIGGGDSAAAAKQLQIADQFSFISTGGGASLALIGGEELVGISDIQK 408 FSVIGGGDSAAA KQ+Q++DQFSFISTGGGASLALIGGEELVGISDIQK Sbjct 366 FSVIGGGDSAAAVKQMQLSDQFSFISTGGGASLALIGGEELVGISDIQK 414 Lambda K H a alpha 0.318 0.135 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 47240592 Query= gi|13508169|ref|NP_110118.1| glycerladehyde-3-phosphate dehydrogenase [Mycoplasma pneumoniae M129] Length=337 Score E Sequences producing significant alignments: (Bits) Value gi|12045157|ref|NP_072968.1| glyceraldehyde-3-phosphate dehydroge... 592 0.0 >gi|12045157|ref|NP_072968.1| glyceraldehyde-3-phosphate dehydrogenase (gap) [Mycoplasma genitalium G-37] Length=337 Score = 592 bits (1525), Expect = 0.0, Method: Compositional matrix adjust. Identities = 277/337 (82%), Positives = 313/337 (93%), Gaps = 0/337 (0%) Query 1 MLAKSKTIRVAINGFGRIGRLVFRALLSQKNIEIVAVNDLTHPDTLAHLLKYDSAHGEFK 60 M AK++TI+VAINGFGRIGRLVFR+LLS+ N+E+VA+NDLT P+ LAHLLKYDSAHGE K Sbjct 1 MAAKNRTIKVAINGFGRIGRLVFRSLLSKANVEVVAINDLTQPEVLAHLLKYDSAHGELK 60 Query 61 KKVVAKDNTLMIDKKKVLVFSEKDPANLPWAEHNIDIVVESTGRFVSEEGASLHLQAGAK 120 +K+ K N L ID+KKV VFSEKDP NLPW EH+ID+V+ESTGRFVSEEGASLHL+AGAK Sbjct 61 RKITVKQNILQIDRKKVYVFSEKDPQNLPWDEHDIDVVIESTGRFVSEEGASLHLKAGAK 120 Query 121 RVIISAPAKQKTIKTVVYNVNHKIINAEDKIISAASCTTNCLAPMVHVLEKNFGILHGTM 180 RVIISAPAK+KTI+TVVYNVNHK I+++DKIISAASCTTNCLAP+VHVLEKNFGI++GTM Sbjct 121 RVIISAPAKEKTIRTVVYNVNHKTISSDDKIISAASCTTNCLAPLVHVLEKNFGIVYGTM 180 Query 181 VTVHAYTADQRLQDAPHSDLRRARAAACNIVPTTTGAAKAIGLVVPEATGKLNGMALRVP 240 +TVHAYTADQRLQDAPH+DLRRARAAA NIVPTTTGAAKAIGLVVPEA GKLNGM+LRVP Sbjct 181 LTVHAYTADQRLQDAPHNDLRRARAAAVNIVPTTTGAAKAIGLVVPEANGKLNGMSLRVP 240 Query 241 VLTGSIVELCVALEKDATVEQINQAMKKAASASFRYCEDEIVSSDIVGSEHGSIFDSKLT 300 VLTGSIVEL V LEK +VEQ+NQAMK+ ASASF+YCED IVSSD+V SE+GSIFDSKLT Sbjct 241 VLTGSIVELSVVLEKSPSVEQVNQAMKRFASASFKYCEDPIVSSDVVSSEYGSIFDSKLT 300 Query 301 NIIEVDGNKLYKVYAWYDNESSYVNQLVRVVNYCAKL 337 NI+EVDG KLYKVYAWYDNESSYV+QLVRVV+YCAKL Sbjct 301 NIVEVDGMKLYKVYAWYDNESSYVHQLVRVVSYCAKL 337 Lambda K H a alpha 0.318 0.132 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37656290 Query= gi|13508170|ref|NP_110119.1| permease [Mycoplasma pneumoniae M129] Length=317 Score E Sequences producing significant alignments: (Bits) Value gi|12045158|ref|NP_072969.1| hypothetical protein MG302 [Mycoplas... 404 3e-144 gi|12045034|ref|NP_072844.1| hypothetical protein MG181 [Mycoplas... 68.6 1e-14 >gi|12045158|ref|NP_072969.1| hypothetical protein MG302 [Mycoplasma genitalium G-37] Length=317 Score = 404 bits (1038), Expect = 3e-144, Method: Compositional matrix adjust. Identities = 204/317 (64%), Positives = 246/317 (78%), Gaps = 0/317 (0%) Query 1 MTSKNFLSQLPPVLKLWWWIISLVVAFLPLGLHGLIIINAIFFALVIVVERKLKTFAIIF 60 M +FL+++ P+LKLW+W+ISLVVAFLPLGL+GL+IIN +F LV++ E+++K+ II Sbjct 1 MQKTSFLNKIDPLLKLWFWLISLVVAFLPLGLYGLVIINLVFLTLVVISEKRVKSALIIL 60 Query 61 GWLLFFFWFNIVVNGFIFLPNSSALASQNENFLGHFIYSGGEQFGGVSWWSVNTRSLLRS 120 W+LFF WFN++VNGFIFLPN++ QN NFLG FIYSGG FGGVSWWS N RS LRS Sbjct 61 SWMLFFLWFNVIVNGFIFLPNTALSVDQNHNFLGSFIYSGGNNFGGVSWWSFNLRSFLRS 120 Query 121 LVIALRISMLFATSFLLTASTSIYELAFGVERLCTPLRYLKIKTQPLSILFALVFKLLPI 180 VIALRISMLF+ SFLLT S+SIYELA+ VER L+ IK QP+SIL A++FKLLP Sbjct 121 FVIALRISMLFSASFLLTTSSSIYELAWAVERFFKFLKLFHIKVQPISILLAVIFKLLPT 180 Query 181 VKGELKRIKQAQAIRGFKYGKLAFLNPVKLKTLFIPVLLSTVKKTEAVAFALQAKGYQLD 240 VK E+ RIKQAQA RGF Y K +FLNP K+KTLFIPVLLSTVKKTE AFALQAKGY L+ Sbjct 181 VKSEIIRIKQAQATRGFIYNKCSFLNPFKIKTLFIPVLLSTVKKTETTAFALQAKGYDLN 240 Query 241 NPNKTHYLQKYNLWGGIVFLGLFVLLSCLLMVNNWHLVYWTNPHYSFTFTHQNFCFFKQI 300 N N+THY KYNL G+ L +L S LL+ NNW+LVYW NP+YSF F QNF F + I Sbjct 241 NTNRTHYPLKYNLLNGVFLLVGLLLFSILLIANNWNLVYWENPNYSFNFDKQNFIFLRAI 300 Query 301 SSPQLLAFWQLELLAIG 317 +S LL FWQ+EL+AIG Sbjct 301 NSNNLLYFWQIELIAIG 317 >gi|12045034|ref|NP_072844.1| hypothetical protein MG181 [Mycoplasma genitalium G-37] Length=420 Score = 68.6 bits (166), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/162 (30%), Positives = 90/162 (56%), Gaps = 12/162 (7%) Query 118 LRSLVIALRIS------MLFATSFLLTASTSIYELAFGVERLCTPLRYLKIKTQPLSILF 171 LR++++A ++ +LFAT +LT+++S ELA+G+ERL PL+ +KI ++ Sbjct 228 LRAVILAFYVTQKILIMILFAT--VLTSTSSSVELAYGIERLLWPLKLIKIPVNVFAMTI 285 Query 172 ALVFKLLPIVKGELKRIKQAQAIRGFKYGKLAFLNPVK-LKTLFIPVLLSTVKKTEAVAF 230 A+ + +P + E +RI AQA RG + FL ++ L +L +P++ + +A Sbjct 286 AIAIRFVPSLLLESQRILNAQASRGLDFRNGGFLVKMRSLSSLVVPMVSIAFRNASELAS 345 Query 231 ALQAKGYQLDNPNKTHYLQKYNLWGGIVFLGLFVLLSCLLMV 272 A++A+GY ++ Y Q W I L LF++ + +++ Sbjct 346 AMEARGYH-PAKKRSSYRQYKITW--IDILALFLVFAWFVVI 384 Lambda K H a alpha 0.331 0.143 0.458 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35086103 Query= gi|13508171|ref|NP_110120.1| abc transport ATP-binding protein [Mycoplasma pneumoniae M129] Length=382 Score E Sequences producing significant alignments: (Bits) Value gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 424 1e-150 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 146 7e-43 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 80.5 5e-19 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 76.6 2e-17 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 75.9 3e-17 gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein... 69.3 3e-15 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 66.6 8e-14 gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 62.0 2e-12 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 60.5 5e-12 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 57.8 9e-11 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 424 bits (1091), Expect = 1e-150, Method: Compositional matrix adjust. Identities = 206/350 (59%), Positives = 262/350 (75%), Gaps = 0/350 (0%) Query 30 MQTPQIIWSLIAPQYRGLANKVNRKLIQSSIKHYFWYCKQFDKLVHPFYYLTAKKHTPLF 89 MQTPQI LI +Y A K N KL + K F + K+ DK+++PFY+L +KK P F Sbjct 1 MQTPQIKLDLIEQKYHLQAQKANLKLAKLDSKKLFSFYKKVDKIINPFYFLNSKKSIPFF 60 Query 90 NQQLVDLAQSTLYFYNLSVFVDKSNAGQIIKNVTGSVEPNQITVIFGPSGSGKTTLIKQL 149 N +L+++ Q L+F N+SVFV+K N GQIIK +G +EPN+ITVIFG SGSGKTTLIKQL Sbjct 61 NSKLLNIEQDPLFFNNISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLIKQL 120 Query 150 GLVENPTCGFLNCGNFYYFANQKHNRATKQFQNSIGYVLQKAEEQFLCDSVLEEVLTGAI 209 GL E P+ G++NC N+ YFANQ + TK F+ IGY+LQKAE+QF CDS+LEEVLTGA+ Sbjct 121 GLFEKPSFGYINCANYCYFANQYQQKITKNFKQKIGYILQKAEDQFFCDSILEEVLTGAV 180 Query 210 NLGLCQKGDVNFAKKYLEMCGLHHIPLIKNPLELSGGQKKRLALASVLAMQVQFLILDEP 269 NL LC K DVN+AKKYL++CGL +IPLIKNP+ELS GQKKRLALASVLAMQV+FLILDEP Sbjct 181 NLKLCHKKDVNYAKKYLDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFLILDEP 240 Query 270 TVGLDQEGKALKSALLKQLKQVTRIMIVSHDVDFIYETADSLIQLEAGQIVDQMSVADFF 329 TVGLDQ + S +L +KQ TRI+IVSHDVDFI+ETAD +I L G+I+ Q +V DFF Sbjct 241 TVGLDQMAISNLSKMLVAMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQTTVNDFF 300 Query 330 NNMQLLQRYEITPPLVVQTIQLLQAKGVQLNDPLAIKTVHDLIDQLKPLF 379 +N L +Y ITPP+++Q +++ KG+ + IK + DLI +LK LF Sbjct 301 SNTSWLMQYGITPPVIIQAVKMFNEKGIAFKNQAEIKNLDDLISELKNLF 350 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 146 bits (368), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 93/267 (35%), Positives = 146/267 (55%), Gaps = 3/267 (1%) Query 97 AQSTLYFYNLS-VFVDKSNAG-QIIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVEN 154 A L +LS VF K+N ++I + + + + NQI I G SGSGK+TL+ + Sbjct 13 ADEILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIK 72 Query 155 PTCGFLNCGNFYYFANQKHNRATKQFQNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLC 214 P G + + Y A Q+ + K+ + +I V Q E Q D+V ++++ G + LG Sbjct 73 PNQGDIWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQS 132 Query 215 QKGDVNFAKKYLEMCGLHHIPLIKNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLD 274 + A YLEM GL + L +NP ELSGGQK+R+A+A +LA++ + LI DEPT GLD Sbjct 133 KYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLD 192 Query 275 QEGKALKSALLKQLKQVTR-IMIVSHDVDFIYETADSLIQLEAGQIVDQMSVADFFNNMQ 333 EG+ L+K KQ R + +++H ++ + E AD ++ L G++V S + F + Sbjct 193 PEGEREMMQLIKTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVFMDQT 252 Query 334 LLQRYEITPPLVVQTIQLLQAKGVQLN 360 L++ I P V+Q I+ L A N Sbjct 253 FLEKTTIVLPPVIQVIKDLIAINAHFN 279 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 80.5 bits (197), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 16/232 (7%) Query 118 IIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVENPTCGFLNC-GNFYYFANQKHNRA 176 +I+ ++ SV + I G +GSGK+T+ K L + P G + G F N + R Sbjct 23 LIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDNVSYLR- 81 Query 177 TKQFQNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQ---KGDVNFAKKYLEMCGLHH 233 N+IG + Q + QF+ +V +++ G N + K ++ + G Sbjct 82 -----NNIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQTDGF-- 134 Query 234 IPLIKNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLDQEG-KALKSALLKQLKQVT 292 + + P LSGGQK+R+A+ASVLA+ +I DE T LD + K +K ++K KQ Sbjct 135 --IKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGK 192 Query 293 RIMIVSHDVDFIYETADSLIQLEAGQIVDQMSVADFFNNMQLLQRYEITPPL 344 ++ ++HD++ + + AD ++ + G+++ Q + F + Q LQ+ + P Sbjct 193 CVISITHDMEEVTK-ADKVLVMNEGKLIKQGKPVEVFTSEQELQKIRLDIPF 243 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 76.6 bits (187), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/219 (27%), Positives = 102/219 (47%), Gaps = 8/219 (4%) Query 117 QIIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVENPTCGFLNCGNFYYFANQKHNRA 176 Q++ ++ ++ N+IT + G SG GK+T I+ L + + G+ Y+ ++ Sbjct 97 QVLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGI 156 Query 177 TKQF--QNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQKGDVN-FAKKYLEMCGLH- 232 + S+G V QK S+ E + G G+ K +N ++ L L Sbjct 157 INDLTLRTSVGMVFQKLTP--FNFSIFENIAYGIRAHGIHNKNAINEIVRQALISAALWD 214 Query 233 --HIPLIKNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLDQEGKALKSALLKQLKQ 290 L +N LSGGQ++RL +A +A+Q L++DEPT LD L++QLK+ Sbjct 215 EVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKE 274 Query 291 VTRIMIVSHDVDFIYETADSLIQLEAGQIVDQMSVADFF 329 I+IV+H + D I G++++Q + F Sbjct 275 KFTIVIVTHSMAQTIRITDETIFFADGRVIEQGTTKQIF 313 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 75.9 bits (185), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 34/225 (15%) Query 111 DKSNAGQIIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVENPTCGFLNCGNFYYFAN 170 D I+ +V+ + +I +I G SGSGKTTL+ +G ++ + G +C AN Sbjct 97 DSKQEISILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLG--SC----IVAN 150 Query 171 QKHNRATKQ-----FQNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQKGDVNFAKKY 225 + T + +N++GYV Q+ L E+L+ N+ + Q N KY Sbjct 151 CPLEKCTSEQLLTYRKNNLGYVYQRYN--------LIELLSAYDNIAISQ----NLIPKY 198 Query 226 LEMCGLHHIP--------LIKNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLDQEG 277 + + L K P E+SGGQK+R+A+A + + + L+ DEPT LD Sbjct 199 QRRLDIEELAEKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNS 258 Query 278 KALKSALLKQLKQVTR--IMIVSHDVDFIYETADSLIQLEAGQIV 320 LL+ + + + I++V+HDV A+ +I++ G+IV Sbjct 259 AENIINLLQTINKTYKQTILMVTHDVSLT-RIANRIIKISDGKIV 302 >gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length=253 Score = 69.3 bits (168), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 103/216 (48%), Gaps = 19/216 (9%) Query 134 IFGPSGSGKTTLIKQLGLVENPTCGFLNCGNFYYFANQKHNRATKQFQNSIGYVLQKAEE 193 + G +GSGK+TL+K LG GFL F N K T N IG +LQ + Sbjct 17 VIGHNGSGKSTLVKLLG-------GFLKAKKGTIFFNDK--ELTSVGFNKIGILLQDPDV 67 Query 194 QFLCDSVLEEVLTGAINLG-LCQKGD--VNFAKKYLEMCGLHHIPLIKNPLELSGGQKKR 250 Q L D++ +E++ N G L + D +N +E+ PL K LS G+K+R Sbjct 68 QLLADTLHQELIFTLENHGVLASEMDKIINEVLTVVELKDKQFTPLKK----LSFGEKQR 123 Query 251 LALASVLAMQVQFLILDEPTVGLDQE-GKALKSALLKQLKQVTRIMI-VSHDVDFIYETA 308 A +LA++ Q +LDE LD + LK + +K+ +I+I ++HD + ++ A Sbjct 124 AVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIVINITHDFNDLF-LA 182 Query 309 DSLIQLEAGQIVDQMSVADFFNNMQLLQRYEITPPL 344 D +I L G ++ + + + + L + P Sbjct 183 DEIIFLSKGSLIKKFAPEAIYEQLDLFHNHHFNLPF 218 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 66.6 bits (161), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/204 (30%), Positives = 100/204 (49%), Gaps = 8/204 (4%) Query 118 IIKNVTGSVEPNQITVIFGPSGSGKTTLIKQLGLVENPTCGFLNCGNFYYFANQKHNRAT 177 ++K V +++ + VI GPSGSGKTTL+ + ++ + G + N Y + T Sbjct 251 VLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSV-IVNGYNMICLNDRKLT 309 Query 178 KQFQNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQKGDVNFAKKYLEMCGLHHIPLI 237 K Q +GY+ Q+ L + + E + NL ++ LE G+ + Sbjct 310 KFRQKYVGYIFQQY--GLLPNLTVRENIEIGANLQPDPSKRISI-DALLEAVGMDSLQK- 365 Query 238 KNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLDQEGK--ALKSALLKQLKQVTRIM 295 K P ELSGGQ++R+++A A + DEPT LD E LK L + + T ++ Sbjct 366 KLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMI 425 Query 296 IVSHDVDFIYETADSLIQLEAGQI 319 IV+H+ + I AD +I + G+I Sbjct 426 IVTHN-NLIANLADLVIYVADGKI 448 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 62.0 bits (149), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 62/120 (52%), Gaps = 7/120 (6%) Query 219 VNFAKKYLEMCGLHHIPLIKN-----PLELSGGQKKRLALASVLAMQVQFLILDEPTVGL 273 +N KK LE+ I K P E SGG ++R+ +A +A + +I DEPT L Sbjct 180 INVEKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTAL 239 Query 274 DQEGKALKSALLKQLKQVTRIMI--VSHDVDFIYETADSLIQLEAGQIVDQMSVADFFNN 331 D +A L+KQL+ + I I +SH++ I D + + AG+IV+Q V + F N Sbjct 240 DVTIQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTN 299 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 60.5 bits (145), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 119/262 (45%), Gaps = 19/262 (7%) Query 64 FWYCKQFDKLVHPFYYLTAKKHTPLFNQQLVDLAQSTLYFYNLSVFVDKSNAGQIIKN-V 122 F K+ KL+ KKH + + + +YF + V Q+I N + Sbjct 20 FAVSKKASKLIKKL----NKKHPKRKSLNSFEAKKYDIYFKEVCKAVTNGINNQLICNHI 75 Query 123 TGSVEPNQITVIFGPSGSGKTTLIKQLGLVENPTCG--FLNCGNFYYFANQKHNRATKQF 180 + P + VI G SGSGKT+L+ + ++ PT G F+ CG + + T Sbjct 76 NLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSFV-CGTNTICCSDA--KLTALR 132 Query 181 QNSIGYVLQKAEEQFLCDSVLEEVLTGAINLGLCQKGDVNFAKKYLEMCGLHHIPLIKNP 240 ++GY+ Q + L D +++ I L L K N + L K Sbjct 133 NKNVGYIFQ--QYGLLRDLDVDD----NIKLALPLKKRFNNNLEELLERLELKEHRHKKV 186 Query 241 LELSGGQKKRLALASVLAMQVQFLILDEPT--VGLDQEGKALKSALLKQLKQVTRIMIVS 298 +LSGGQ++R+A+A L + + L DEPT V +D K L+ + + T I+IV+ Sbjct 187 HKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIVT 246 Query 299 HDVDFIYETADSLIQLEAGQIV 320 H+ + I E A +I++ G+I+ Sbjct 247 HN-EKIVELAKRVIKIHDGKII 267 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 57.8 bits (138), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 58/108 (54%), Gaps = 2/108 (2%) Query 226 LEMCGLHHIPLIKNPLELSGGQKKRLALASVLAMQVQFLILDEPTVGLDQEGKALKSALL 285 L+ GL + P E SGGQ++R+A+A L + + +I DE LD +A +L Sbjct 668 LDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINIL 727 Query 286 KQL--KQVTRIMIVSHDVDFIYETADSLIQLEAGQIVDQMSVADFFNN 331 K L K ++ ++HD+ + + LI + G+IV++ SV + F+N Sbjct 728 KDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSN 775 Lambda K H a alpha 0.321 0.137 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 43735110 Query= gi|13508172|ref|NP_110121.1| abc transport ATP-binding protein [Mycoplasma pneumoniae M129] Length=270 Score E Sequences producing significant alignments: (Bits) Value gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein... 365 1e-130 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 143 3e-43 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 92.0 2e-23 gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 71.2 6e-16 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 70.9 1e-15 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 67.8 6e-15 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 63.5 2e-13 gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 57.0 2e-11 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 57.8 2e-11 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 57.4 3e-11 >gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length=253 Score = 365 bits (937), Expect = 1e-130, Method: Compositional matrix adjust. Identities = 176/252 (70%), Positives = 211/252 (84%), Gaps = 0/252 (0%) Query 19 LKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAPKQTIFFRGQPLEEVGFRQIGIL 78 L +++F+++ H+A+IGHNGSGKSTLVKLLGGFLKA K TIFF + L VGF +IGIL Sbjct 2 LNQISFNVQDGCHLAVIGHNGSGKSTLVKLLGGFLKAKKGTIFFNDKELTSVGFNKIGIL 61 Query 79 LQDPDMQLLGDTLHQELIFSLENHGVDPKQMDRVIADVLAVVELQGKQFTPLSKLSFGEK 138 LQDPD+QLL DTLHQELIF+LENHGV +MD++I +VL VVEL+ KQFTPL KLSFGEK Sbjct 62 LQDPDVQLLADTLHQELIFTLENHGVLASEMDKIINEVLTVVELKDKQFTPLKKLSFGEK 121 Query 139 QRAVFACLLAVKPELYLLDEAFSMLDGKLASKLKRFIFKVIKEQQKTVINVTHDFNDLFL 198 QRAVFACLLAVKP++YLLDEAFSMLD K+++KLK+F+F IK+Q K VIN+THDFNDLFL Sbjct 122 QRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIVINITHDFNDLFL 181 Query 199 ADEIIFLSKGQLLKQFSPAAIYKQLHLFHQHHFTLPFPWLLAHEVADHLHHEMKGPIEEL 258 ADEIIFLSKG L+K+F+P AIY+QL LFH HHF LPFP LLAH+VA ++ + EL Sbjct 182 ADEIIFLSKGSLIKKFAPEAIYEQLDLFHNHHFNLPFPLLLAHKVAKQINKKTPSLSFEL 241 Query 259 QDVVDWICKHLK 270 DVV+WICKHLK Sbjct 242 NDVVNWICKHLK 253 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 143 bits (360), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 139/242 (57%), Gaps = 7/242 (3%) Query 6 NLSFTYPRHSQPALKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLK--APKQTIFFR 63 N++F+Y + P +++L+FS+ +V I+GHNGSGKST+ KLL G LK A + IF + Sbjct 13 NVAFSY--NELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGK 70 Query 64 GQPLEEVGF--RQIGILLQDPDMQLLGDTLHQELIFSLENHGVDPKQMDRVIADVLAVVE 121 + V + IGI+ Q+PD Q +G T+ ++ F LEN +++ +I +V + Sbjct 71 TVDFDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQ 130 Query 122 LQGKQFTPLSKLSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKLASKLKRFIFKVIKE 181 G LS G+KQR A +LA+ P + + DE+ +MLD K +K+F+ K+ K Sbjct 131 TDGFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAK- 189 Query 182 QQKTVINVTHDFNDLFLADEIIFLSKGQLLKQFSPAAIYKQLHLFHQHHFTLPFPWLLAH 241 Q K VI++THD ++ AD+++ +++G+L+KQ P ++ + +PF L+ Sbjct 190 QGKCVISITHDMEEVTKADKVLVMNEGKLIKQGKPVEVFTSEQELQKIRLDIPFSLSLST 249 Query 242 EV 243 ++ Sbjct 250 KI 251 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 92.0 bits (227), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 130/255 (51%), Gaps = 29/255 (11%) Query 1 MLNVTNLSFTYPRHSQPALKKLN---FSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAPK 57 +L V++LS + + +K ++ ++ + N IIG +GSGKSTLV G +K P Sbjct 16 ILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIK-PN 74 Query 58 Q------TIFFRGQPLEEVGFRQ----IGILLQDPDMQLLGDTLHQELIF---SLENHGV 104 Q I+ + + F++ I I+ Q P+ QL DT+ ++++F +L Sbjct 75 QGDIWVKDIYIGAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQSKY 134 Query 105 DPKQMDRVIADVLAVVELQGKQFTPLSK----LSFGEKQRAVFACLLAVKPELYLLDEAF 160 D +Q +E+ G ++ L + LS G+K+R A +LA++PE+ + DE Sbjct 135 DARQ------KAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPT 188 Query 161 SMLDGKLASKLKRFIFKVIKEQQKTVINVTHDF-NDLFLADEIIFLSKGQLLKQFSPAAI 219 + LD + ++ + I K K+QQ+TV +TH N L +AD ++ L+KG+L+K SP + Sbjct 189 AGLDPEGEREMMQLI-KTAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEV 247 Query 220 YKQLHLFHQHHFTLP 234 + + LP Sbjct 248 FMDQTFLEKTTIVLP 262 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 71.2 bits (173), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/245 (28%), Positives = 119/245 (49%), Gaps = 20/245 (8%) Query 5 TNLSFTYPRHSQ-PALKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAP------K 57 N+S +H+ +K + ++PN I G +GSGK+TL+K LG F K Sbjct 75 NNISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLIKQLGLFEKPSFGYINCA 134 Query 58 QTIFFRGQPLEEV--GFRQ-IGILLQDPDMQLLGDTLHQELIFSLENHGVDPKQMDRVIA 114 +F Q +++ F+Q IG +LQ + Q D++ +E++ N + K + + Sbjct 135 NYCYFANQYQQKITKNFKQKIGYILQKAEDQFFCDSILEEVLTGAVNLKLCHK---KDVN 191 Query 115 DVLAVVELQGKQFTPLSK----LSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKLASK 170 ++L G + PL K LS G+K+R A +LA++ + +LDE LD S Sbjct 192 YAKKYLDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFLILDEPTVGLDQMAISN 251 Query 171 LKRFIFKVIKEQQKTVINVTHDFNDLF-LADEIIFLSKGQLLKQFSPAAIYKQLHLFHQH 229 L + + V +Q ++ V+HD + +F AD+II L +G+++ Q + + Q+ Sbjct 252 LSKML--VAMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQTTVNDFFSNTSWLMQY 309 Query 230 HFTLP 234 T P Sbjct 310 GITPP 314 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 70.9 bits (172), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/114 (37%), Positives = 70/114 (61%), Gaps = 1/114 (1%) Query 108 QMDRVIADVLAVVELQGKQFTPLSKLSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKL 167 + ++ ++DV+ +V L+GK+ +LS G KQR A L V+PE+ LLDE S LD K+ Sbjct 323 EQNKKVSDVIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKV 382 Query 168 ASKLKRFIFKVIKEQQKTVINVTHDFND-LFLADEIIFLSKGQLLKQFSPAAIY 220 L++ + ++ K+ T I VTHD + L L+D I+ +++G +L+ +P IY Sbjct 383 RKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIY 436 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 67.8 bits (164), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/234 (25%), Positives = 115/234 (49%), Gaps = 22/234 (9%) Query 4 VTNLSFTYPRHSQPALKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAPKQT---- 59 + N +F Y ++ Q L +N +K N A+IG +G GKST ++ L + T Sbjct 85 IRNFNFWYNKNKQ-VLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTG 143 Query 60 -IFFRGQPLE-----EVGFR-QIGILLQDPDMQLLGDTLHQELIFSLENHGVDPKQ-MDR 111 I+F G+ + ++ R +G++ Q + ++ + + + + HG+ K ++ Sbjct 144 DIYFLGKNINSGIINDLTLRTSVGMVFQK--LTPFNFSIFENIAYGIRAHGIHNKNAINE 201 Query 112 VIADVLAVV----ELQGKQFTPLSKLSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKL 167 ++ L E++ + LS G++QR A +A++P++ L+DE S LD + Sbjct 202 IVRQALISAALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDS-I 260 Query 168 ASKLKRFIFKVIKEQQKTVINVTHDF-NDLFLADEIIFLSKGQLLKQFSPAAIY 220 A+ + + +KE+ VI VTH + + DE IF + G++++Q + I+ Sbjct 261 ATNSIELLIQQLKEKFTIVI-VTHSMAQTIRITDETIFFADGRVIEQGTTKQIF 313 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 63.5 bits (153), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 13/191 (7%) Query 32 VAIIGHNGSGKSTLVKLLGGFLKAPKQTIFFRGQPLEEVGFRQIGILLQDPDMQLLGDTL 91 V I+G +GSGK+TL+ L+GG+ + PLE+ Q+ ++ LG Sbjct 118 VIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLLTYRKNN----LGYVY 173 Query 92 HQ----ELIFSLENHGVD----PKQMDRV-IADVLAVVELQGKQFTPLSKLSFGEKQRAV 142 + EL+ + +N + PK R+ I ++ ++++ + ++S G+KQR Sbjct 174 QRYNLIELLSAYDNIAISQNLIPKYQRRLDIEELAEKLDIKEILYKFPYEMSGGQKQRVA 233 Query 143 FACLLAVKPELYLLDEAFSMLDGKLASKLKRFIFKVIKEQQKTVINVTHDFNDLFLADEI 202 A + +P+L L DE LD A + + + K ++T++ VTHD + +A+ I Sbjct 234 IARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYKQTILMVTHDVSLTRIANRI 293 Query 203 IFLSKGQLLKQ 213 I +S G+++ Sbjct 294 IKISDGKIVSN 304 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 57.0 bits (136), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 96/206 (47%), Gaps = 15/206 (7%) Query 1 MLNVTNLSFTYPRHSQPALKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAPKQTI 60 +L+ +S Y + P L+ ++F + +V ++G +G GKS+L+ + + Sbjct 6 ILSFEKVSIIYKKA--PLLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLV 63 Query 61 FFRG----QPLEEVGFRQIGILLQDPDMQLLGDTLHQELIFSLENH--------GVDPKQ 108 +F G + + +Q L Q P++ + D +++ ++ S + +PK Sbjct 64 YFDGVASNKKEYKKLKKQCSYLDQIPNL-IDTDYVYEAILRSAKQKLTWLQKLICFEPKW 122 Query 109 MDRVIADVLAVVELQGKQFTPLSKLSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKLA 168 + I +L V L + LS G+KQR A L P+L L+DE + LD A Sbjct 123 IKDKILAILKEVNLNDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTA 182 Query 169 SKLKRFIFKVIKEQQKTVINVTHDFN 194 SK+ I +K ++ T++ VTHD + Sbjct 183 SKIMDLITDFVKREKITLVFVTHDID 208 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 57.8 bits (138), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/204 (27%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query 15 SQPALKKLNFSLKPNTHVAIIGHNGSGKSTLVKLLGGFLKAPKQTIFFRGQPL------E 68 + LK ++ ++K + + I+G +GSGK+TL+ ++ G +A ++ G + + Sbjct 248 TNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIVNGYNMICLNDRK 307 Query 69 EVGFRQ--IGILLQDPDMQLLGDTLHQELIFSLENHGVDPKQMDRVIADVLAVVELQGKQ 126 FRQ +G + Q LL + +E I N DP + + A +L V + Q Sbjct 308 LTKFRQKYVGYIFQQ--YGLLPNLTVRENIEIGANLQPDPSKRISIDA-LLEAVGMDSLQ 364 Query 127 FTPLSKLSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKLASKLKRFIFKVIKEQQKTV 186 ++LS G++QR A A P L DE LD ++ + + + K Q T+ Sbjct 365 KKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLAIKKRYQTTM 424 Query 187 INVTHDFNDLFLADEIIFLSKGQL 210 I VTH+ LAD +I+++ G++ Sbjct 425 IIVTHNNLIANLADLVIYVADGKI 448 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 57.4 bits (137), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 67/109 (61%), Gaps = 4/109 (4%) Query 113 IADVLAVVELQGKQFTPLSKLSFGEKQRAVFACLLAVKPELYLLDEAFSMLDGKLASKLK 172 +A+ LA+ ++ K+ P K+S G++QR A + +P+L L+DE S LD KL + + Sbjct 351 VANKLAITKILTKR--P-DKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTR 407 Query 173 RFIFKVIKEQQKTVINVTHDFND-LFLADEIIFLSKGQLLKQFSPAAIY 220 ++I + +E Q T + VTHD + + ++D I+ +S G++ + +P+ +Y Sbjct 408 QWIRQFQQELQITTVFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELY 456 Lambda K H a alpha 0.324 0.141 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28649133 Query= gi|13508173|ref|NP_110122.1| Molecular chaperone [Mycoplasma pneumoniae M129] Length=595 Score E Sequences producing significant alignments: (Bits) Value gi|12045161|ref|NP_072972.1| heat shock protein 70 (dnaK) [Mycopl... 1097 0.0 >gi|12045161|ref|NP_072972.1| heat shock protein 70 (dnaK) [Mycoplasma genitalium G-37] Length=595 Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/595 (93%), Positives = 575/595 (97%), Gaps = 0/595 (0%) Query 1 MSTDNGLIIGIDLGTTNSCVSVMENGRPVVLENPEGKRTTPSIVSYKNNEIIVGDAAKRQ 60 MS DNGLIIGIDLGTTNSCVSVME GRPVVLENPEGKRTTPSIVSYKNNEIIVGDAAKRQ Sbjct 1 MSADNGLIIGIDLGTTNSCVSVMEGGRPVVLENPEGKRTTPSIVSYKNNEIIVGDAAKRQ 60 Query 61 MVTNPNTIVSIKRLMGTSNKVTVKNPDGSTKELTPEEVSAQILSYLKDYAEKKIGKTISR 120 MVTNPNTIVSIKRLMGTSNKV V+N DG+TKEL+PE+VSAQILSYLKD+AEKKIGK ISR Sbjct 61 MVTNPNTIVSIKRLMGTSNKVKVQNADGTTKELSPEQVSAQILSYLKDFAEKKIGKKISR 120 Query 121 AVITVPAYFNDAERNATKTAGKIAGLNVERIINEPTAAALAYGIDKSNREMKVLVYDLGG 180 AVITVPAYFNDAERNATKTAGKIAGLNVERIINEPTAAALAYGIDK++REMKVLVYDLGG Sbjct 121 AVITVPAYFNDAERNATKTAGKIAGLNVERIINEPTAAALAYGIDKASREMKVLVYDLGG 180 Query 181 GTFDVSLLDIAEGTFEVLATAGDNRLGGDDWDNKIIEFILAHIAQEHNGLNLSNDKMAMQ 240 GTFDVSLLDIAEGTFEVLATAGDNRLGGDDWDNKIIE+I A+IA+EH GLNLS DKMAMQ Sbjct 181 GTFDVSLLDIAEGTFEVLATAGDNRLGGDDWDNKIIEYISAYIAKEHQGLNLSKDKMAMQ 240 Query 241 RLKEAAERAKIELSAQLEAIISLPFLTVTEKGPVNVELKLTRAKFEEITKQLLERTRNPI 300 RLKEAAERAKIELSAQLE IISLPFLTVT+KGPVNVELKLTRAKFEE+TK LLERTRNPI Sbjct 241 RLKEAAERAKIELSAQLETIISLPFLTVTQKGPVNVELKLTRAKFEELTKPLLERTRNPI 300 Query 301 SDVLREAKIKPEEINEILLVGGSTRMPAVQKLVESMVPGHSPNRSINPDEVVAIGAAIQG 360 SDV++EAKIKPEEINEILLVGGSTRMPAVQKLVESMVPG PNRSINPDEVVAIGAAIQG Sbjct 301 SDVIKEAKIKPEEINEILLVGGSTRMPAVQKLVESMVPGKKPNRSINPDEVVAIGAAIQG 360 Query 361 GVLRGDVKDVLLLDVTPLTLSIETLGGVATPLIKRNTTIPVSKSQIFSTAQDNQESVDVV 420 GVLRGDVKDVLLLDVTPLTLSIETLGGVATPLIKRNTTIPVSKSQIFSTAQDNQESVDVV Sbjct 361 GVLRGDVKDVLLLDVTPLTLSIETLGGVATPLIKRNTTIPVSKSQIFSTAQDNQESVDVV 420 Query 421 VCQGERPMARDNKSLGRFNLGGIQPAPKGKPQIEITFSLDANGILNVKAKDLTTQKENSI 480 VCQGERPM+RDNKSLGRFNLGGIQPAPKGKPQIEITFSLDANGILNVKAKDLTTQKENSI Sbjct 421 VCQGERPMSRDNKSLGRFNLGGIQPAPKGKPQIEITFSLDANGILNVKAKDLTTQKENSI 480 Query 481 TISDNGNLSEEEIQKMIRDAEANKERDNVIRERIELRNEGESIVSTIKEILQSPEAKDFP 540 TISDNGNLSEEEIQKMIRDAEANKERDN+IRERIELRNEGE IV+TIKEIL SP+AK+FP Sbjct 481 TISDNGNLSEEEIQKMIRDAEANKERDNIIRERIELRNEGEGIVNTIKEILASPDAKNFP 540 Query 541 KEEKEKLDKITGGIDAAIKANDYTKLKAEIENFKKWREEMAKKYNPNGDQGQPAQ 595 KEEKEKL+K+TG IDAAIKANDY KLK EIENFKKWREEMAKKYNP G+QG A+ Sbjct 541 KEEKEKLEKLTGNIDAAIKANDYAKLKVEIENFKKWREEMAKKYNPTGEQGPQAK 595 Lambda K H a alpha 0.311 0.131 0.354 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 72216255 Query= gi|13508174|ref|NP_110123.1| permease [Mycoplasma pneumoniae M129] Length=395 Score E Sequences producing significant alignments: (Bits) Value gi|12045162|ref|NP_072973.1| hypothetical protein MG306 [Mycoplas... 560 0.0 >gi|12045162|ref|NP_072973.1| hypothetical protein MG306 [Mycoplasma genitalium G-37] Length=393 Score = 560 bits (1444), Expect = 0.0, Method: Compositional matrix adjust. Identities = 275/386 (71%), Positives = 322/386 (83%), Gaps = 2/386 (1%) Query 1 MSTPKSASFFTRKNILAFSFFIAFLVVVSVLVTVFFLDIKTGDVKTIINTINRTNWPWIL 60 M+ + +FF KNI+AFSFF+ FL+V+SV+VT+FFL + DVKTII IN NW WI Sbjct 1 MAKLTTNTFFNTKNIVAFSFFLVFLIVISVIVTIFFLGVSVDDVKTIITAINYQNWGWIF 60 Query 61 LIVLGIVVTLAWNIIINWWVARRFCFHAPWWEWVLFACVVQFFQIVTPLSLGQDPFRLYW 120 +++LG +V++ WN+IINWWV+RRFCF+A WWEW+LF VVQFFQIVTPLSLGQDPFRLYW Sbjct 61 VVILGFLVSVLWNVIINWWVSRRFCFYASWWEWLLFGFVVQFFQIVTPLSLGQDPFRLYW 120 Query 121 FIKKGMKKQTAVLLVTSTGAFWNLAQALITWPSFFVLSQNYALLEQNHEGFVSYWFSFAG 180 FIKKGMKKQTAVL+VTSTGAFWNL+QALITWPSFFVLS+NY LL NH FVSYW S G Sbjct 121 FIKKGMKKQTAVLIVTSTGAFWNLSQALITWPSFFVLSKNYQLLANNHNSFVSYWLSLTG 180 Query 181 MIFDVVVAILFIFIAYSKRMHVLIYSGVNQFRKWIKRPYLTKEQIYQRFIDKAEFNKLYG 240 MIFDVVVAILFI IA++K+MHVLIYS VNQFRKW+KRPYLTKEQIYQRFI+KAEFNKLYG Sbjct 181 MIFDVVVAILFIVIAFNKKMHVLIYSLVNQFRKWLKRPYLTKEQIYQRFIEKAEFNKLYG 240 Query 241 LEIKRLGLTIFKLLANILIAVVGYFSVFAVFAIVKKENATNNVIDQYSTADIFNITNIAI 300 +E++R GLTIFKLLAN+++A+V YFS+F VF I K N TNNVIDQYS D+FNITNIA+ Sbjct 241 IEMRRWGLTIFKLLANMVVAIVSYFSLFGVFMITKTVNTTNNVIDQYSLIDLFNITNIAV 300 Query 301 TASNFIPVPSGEGATQFVMTSFLNAFKSAVG-IESQVKQGVFLWRFLSVYIPAILFSLCF 359 TASNFIPV SGEGATQFVMTSFLNAFK + Q+K GVFLWR LSVY+PAI +CF Sbjct 301 TASNFIPVASGEGATQFVMTSFLNAFKPTDQFLHDQIKDGVFLWRLLSVYLPAIFTGICF 360 Query 360 IGWVVQVVIEFKHPKPV-LPTVNLIN 384 + W+VQV+ EFK V L TVN ++ Sbjct 361 VVWIVQVIWEFKKTVNVPLKTVNTVS 386 Lambda K H a alpha 0.331 0.142 0.458 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 45569163 Query= gi|13508175|ref|NP_110124.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium [Mycoplasma pneumoniae M129] Length=1244 Score E Sequences producing significant alignments: (Bits) Value gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma ge... 1258 0.0 gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma ge... 127 3e-31 gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma ge... 100 6e-23 >gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1177 Score = 1258 bits (3254), Expect = 0.0, Method: Compositional matrix adjust. Identities = 677/1246 (54%), Positives = 879/1246 (71%), Gaps = 71/1246 (6%) Query 1 MKKFLRKPQFWLLTLGGFLSTSVILAACATPSNSALQTVFKARSSQFFNGEQGSLQSALT 60 MKK L+K +FW L G LS S IL AC+TP+NSALQTVF S+ FF+G++GSL+ L Sbjct 1 MKKLLKKSKFWWFLLCG-LSVSTILVACSTPTNSALQTVFSPTSTNFFHGQKGSLKEGLI 59 Query 61 TALKNPVANKQFIAAPLLKALEAWYENNEDKKITQFLKDTKSNVDSQYTTAVDKVVSASR 120 TALK P ANK F+ PLLKALEAWYENNEDK I +FLKDTK NVD QY V+ ++S R Sbjct 60 TALKTPSANKHFVIGPLLKALEAWYENNEDKAINKFLKDTKKNVDDQYKNTVNGLISPPR 119 Query 121 NKSLFVQQDLLDNAGGSEATWKAQKLLEQLISDFASRVFQKNYLNYKKDGQVSTGPFTYD 180 N+++F+QQDLLD +GGSEA+WK+Q+L QLISDF +++F K++L YK +GQ+STGP+ YD Sbjct 120 NRAVFIQQDLLDKSGGSEASWKSQQLFNQLISDFTAKLFAKDFLVYKPNGQLSTGPYIYD 179 Query 181 ELHKEESWKNFEFSAPRFSETNDDFFAKIQSQVFDQWVEYTDPTLISQVNYKYSAPSQGL 240 EL + E WK+F F PRFSETND FAK+Q+Q+F+ WVEYTDPTLISQ +KY+AP QGL Sbjct 180 ELSQPEKWKDFGFQEPRFSETNDALFAKLQAQIFNLWVEYTDPTLISQATFKYAAPQQGL 239 Query 241 GQIYNREKLKDKLTPSYAFPFFAEEKDIAPNQNVGNKRWKQLVKGEGAITDNNIGQSGTN 300 GQ+YN EKLKDKLTPSYAFPFF ++ +I NQNVGNKRW+QL++ G+ G N Sbjct 240 GQVYNTEKLKDKLTPSYAFPFFPKDGEIPQNQNVGNKRWEQLIE----------GKDGLN 289 Query 301 SQKTGLLKYRNESNKGDFLDFPLNLSDTNETKQLVDASNIVDQLEAANLGAALNLKLQVF 360 + KTGL KY + N+G+ +DFP LSD +TKQ+VD+ NIVDQLEAANLGA+LNLKL + Sbjct 290 TAKTGLEKYILDQNQGNLIDFPTTLSDNTQTKQIVDSLNIVDQLEAANLGASLNLKLDLL 349 Query 361 EQDNDELPQIKELKEDLNNTIVVDKSKDVEKASKTNALFYNDQEGKQQQSDSDPIAGALD 420 QD D+LP IKEL ++LNNTIVV+ +K +E +K+N LF E S + + + Sbjct 350 NQDKDQLPTIKELNKELNNTIVVESTK-IENHTKSNTLFC---EHNTTDSSQNNLKSLIK 405 Query 421 DIFAQNTSEGTNLSKLAEQVKKAAATKMEAKTAVLRTNNSKGQQNNYVVLDAAIPTFNST 480 D F ++++ +NL KLA+Q+ + + M ++ T S ++Y+V DAAIP Sbjct 406 DAFI-SSNDSSNLGKLAKQIHQTTTSDM-----MVSTKASSSTTSSYLVWDAAIPN---- 455 Query 481 TSKSKNNSASNEVLVALKSGSINLRQVQQTDQNSYSPIKFRIVRNSTGVTVFGLDGGSYY 540 +K N+ ++ V + + VQ T NS + +K R+VRN GV V G+DGGSYY Sbjct 456 ---NKTNNGASTVSANCANAT-----VQNTSHNSNNQLKLRLVRNGEGVAVIGIDGGSYY 507 Query 541 LKQDSTNKKSVSKQSLTLLTKSSSGNSNKVLRDLDKQKQFLKFRAFQAKTNTFYSTNFAF 600 L ++S S+K RD++KQKQFL +RAFQAKTNTF ++ ++F Sbjct 508 LTKNS---------------------SSKTERDIEKQKQFLMWRAFQAKTNTFKNSLYSF 546 Query 601 SFPLNETLKSWFDKHRELILANALVNASLDQKDKASKALTEAFNPYKELIKEFAPVALAT 660 SFPLNETLK+WF+K++ELIL NAL+N +KDK S A+ +AFN YKEL+++FAPVALAT Sbjct 547 SFPLNETLKTWFEKNQELILVNALINTDFQKKDKGSDAMQKAFNDYKELMQKFAPVALAT 606 Query 661 TMISFYFDQMKALNNKLLERARNLNQNVNQANPTPWLNGLSAKLPYVNTNGNYEKLNNYF 720 +I F QM AL+NKL R LN NVNQ NPTPWLNGLS+ LPYV +G+YEKLNNYF Sbjct 607 NVIRDLFLQMDALDNKLTSRTTELNTNVNQINPTPWLNGLSSHLPYVRKSGHYEKLNNYF 666 Query 721 TFLITKTLWPKVGQEETSISEESNKLKTKTADVDKIRDKILENIQTKVNDFVKNKLKPAL 780 FLITKTLW KVG E+ +ISE +NKLKT ADVDKIRD+IL +I KV +FV N+LK Sbjct 667 LFLITKTLWKKVGSEKINISENNNKLKTTKADVDKIRDEILSDINNKVTEFV-NQLKVTE 725 Query 781 APRPAYSNVILLNVNNDKVLSSGANWSLASLLQSDKVNPLSFMLLKQAFDNNDLFKKAQK 840 +P +SN+IL+++NND+ L++ ANWSL +LL VNPLSF LLK AF +N F+KA+K Sbjct 726 KSKPNFSNIILVDINNDQSLTNSANWSLNALLDVTTVNPLSFALLKNAFTSNQQFEKAKK 785 Query 841 LFKDIQEKSSNNGGMQSSSTTNSDADALSKVIGNYYYTTWAKLTDKSIYGNPKDNKFDEL 900 LF++I+ K NG +SS+ SDAD+L+KVI NYYY TW+KLT+K++YGNP + DEL Sbjct 786 LFEEIKSK---NGSSSTSSS--SDADSLAKVISNYYYMTWSKLTNKAMYGNPNNGNIDEL 840 Query 901 FKLAFEASIDEKSFNVDYKAVIDHYRFIYTLQWLVDQKLKNFKSLLKTNLKFGEVAFIAY 960 FK AF S+DE FNV++KAVIDHYRFI+TLQWL++ LKNFK +L+ NLK+GE+A+IAY Sbjct 841 FKKAFLESVDESGFNVNFKAVIDHYRFIFTLQWLIENNLKNFKDILQANLKYGEIAYIAY 900 Query 961 -KNTETTNFSNPQGVFGSYFNYEN-SASEVKESTQTLDPNNFFYKTTTKPTVQAIQQVAS 1018 KN + N +NPQG+FGS FNYEN + + QT+DPNNFF+KT T P A+ Sbjct 901 DKNIISNNTNNPQGIFGSVFNYENDEHATTANANQTIDPNNFFFKTKTSPNTTP----AT 956 Query 1019 LALVQKQQMQQNSTDHYGFTGLSTSTSSMFDASSRDAILQQITKTSLQQYGSKDQLKKII 1078 L +Q + ++ YGFTGL+T+ SSM + ++ A+L I SL+QYGSKD LKK I Sbjct 957 TMLSTRQAVSTSNNGTYGFTGLNTTNSSMLENNTNQALLNHIAANSLKQYGSKDDLKKFI 1016 Query 1079 QGTNNQLLLDRIAVQLSGLNPSTTNGGSGKTIATYFQVDAVGNPTLDFQAKRKLLLDLLD 1138 T +QL+LD IA QLS L PS++ +GKT++ YFQVDA+ N LDF+AK+ LLL +LD Sbjct 1017 SETKDQLVLDNIARQLSRLTPSSS-SSNGKTLSAYFQVDAINNSALDFKAKQALLLAVLD 1075 Query 1139 QYQNYFGNGAQKSQRDSTPSGTGNYLTYQNGSDKYTYTQFTYQDIDSLSLTTTSGTNNKI 1198 QY +YF + S + + + G D Y Y QFT DIDSLSLT+++ I Sbjct 1076 QYSSYFNSSNSPSISKRSTQTNQKFSEFNFGGDSYNYLQFTKSDIDSLSLTSSTN----I 1131 Query 1199 ASDVVAALLLFQAADKGTQQLALSAINKPQLNIGDKRIESGLKLLK 1244 SD+VAAL+LFQA+D GTQQLALSAI KPQ IGDKRI+SGL LLK Sbjct 1132 ESDIVAALVLFQASDTGTQQLALSAIEKPQFRIGDKRIQSGLNLLK 1177 >gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1225 Score = 127 bits (318), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 101/357 (28%), Positives = 173/357 (48%), Gaps = 38/357 (11%) Query 1 MKKFLRKPQFWLLTLGGFLSTSVILAACATPSNSALQTVFKARSSQFFNGEQGSLQSALT 60 MK+FL + ++ LL +S ++ ACA P++ ++ +F+ SS F + GS+ + L Sbjct 1 MKRFLHRVKWPLLLSSIAVSLGIVAVACAQPNSRTIENLFRP-SSAFTDKNDGSINATLY 59 Query 61 TALKNPVANKQFIAAPLLKALEAWYENNEDKKITQFLKDTKSNVDSQYTTAVDKVVSASR 120 AL+N Q++ L L +YE N D I + L+ ++ D+ + + + R Sbjct 60 KALENREGLTQYLTMRLAPVLRNFYEENVDDDIKRNLRTFNTDTDNSFVNQEQNLRNQYR 119 Query 121 NKSLF-VQQDLLDNAGGSEATWKAQKLLEQLISDFASRVFQKNYLNY--KKDGQVSTGPF 177 L +Q D+LDN GG++A WK + + +++ DF +++F KN++ Y K G +ST P Sbjct 120 GDYLVRLQTDILDNTGGNQANWKLRDVNNKIVDDFINKLFTKNFVEYVDKSVGVLST-PL 178 Query 178 TYDELHKEESWKNFEFSA------PRFSETNDDFFAKIQSQVFDQWVEYTDPTLISQVNY 231 + + +W N + A R ND +A IQ ++ DQ+V +P L+S+V + Sbjct 179 K-GLIENQSNWNNIKIQAKFVDKNKRLRINNDAVYAAIQDKLLDQFVTNENPNLVSRVVF 237 Query 232 KYSAPSQGLGQIYNREKLKDKLTPSYAFPFFAEEKDIAPNQNVGNKRWKQLVKGEGAITD 291 P+ G +N + +K TPSY F F NK +Q D Sbjct 238 TNETPNDGFDNYFNPDLIKSP-TPSYQFQVF-------------NKYNQQ---------D 274 Query 292 NNI-GQSGTNSQKTGLLKYRNESNKGDFLDFPLNLSDTNETKQLVDASNIVDQLEAA 347 N+I G +G + + L Y N +NK +D P S + K L+ AS++ D + + Sbjct 275 NSIKGANGFHILASNLQSYVNTNNKT--IDIPNKFSSDSGGKLLLKASDMFDTFDPS 329 Score = 108 bits (270), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 160/601 (27%), Positives = 247/601 (41%), Gaps = 152/601 (25%) Query 522 IVRNSTGVTVFGLDGGSYYLKQDSTNKKSVSKQSLTLLTKSSSGNSNKVLRDLDKQKQFL 581 + R G+ + G+DGG YYL S SG RD++KQKQFL Sbjct 453 LARGKDGIHLMGVDGGGYYL--------------------SESG------RDVNKQKQFL 486 Query 582 KFRAFQAKTNTFYSTNFAFSFPLNETLKSWFDKHRELILANALVNA---------SLDQK 632 FRA Q K TN + F L + +K FDK+R L L NAL S Q Sbjct 487 LFRALQTKYG-LIDTNTTYDFKLFDEVKKHFDKNRVLFLFNALFKLVDSKESNFLSFPQF 545 Query 633 DKASKALTEAFNPYKELIKE------FAPVALATTMISFYFDQMKALNNKLLERARNLNQ 686 K S ++ N K+L++ F VA A ++ KL ER + Sbjct 546 KKFSDSIITVKNELKDLVESQYQQIVFNEVATAENKVAL----------KLAERNQPFID 595 Query 687 NVNQANPTPWLNGLSAKLPYV--NTNGNYEKLNNYFTFLITKTLWPKVGQEETSISEESN 744 N + N W+NGL+A LPY + G+Y +L Y+ +I K S S S+ Sbjct 596 N--ERNKQIWMNGLAAVLPYEQDSKTGHYNELGIYYKDIIDKVSSNTSNSNSNSNSSSSD 653 Query 745 KLKTKTADVDKIRDKILENIQTKVNDFVKN--KLKPALAPRPAYSNVILLNV---NNDKV 799 K I DK+ EN + K+ +LK ++ P P YS +IL++ ++ + Sbjct 654 PFSKK------IIDKLKENKKKVEAAVKKHVDELKVSVIPSPQYSQIILVDTKLSSDPRN 707 Query 800 LSSGANWSLASLLQSDKVNPLSFMLLKQAFDNNDLFKKAQKL----FKDIQEKSSNNGGM 855 S N +L ++L SD+ L + + F N+D FK+A L FK+ ++ N + Sbjct 708 TSLALNLALNAVLSSDE---LQNTIRRDYFVNDDQFKQAIDLDKLTFKNWNSLNNENWNI 764 Query 856 QSSSTTNSDADALSKVIGNYYYTTWAKLTDKSIYGN-----PKDNK------FDELFKLA 904 + Y + + K + SI+GN DNK D L+ Sbjct 765 FKYT---------------YLFDLFQKQANPSIFGNGVNESSTDNKPKINGVLDSLYN-- 807 Query 905 FEASIDEKSFNVDYKAVIDHYRFIYTLQWLVDQKLKNFKSLLKTNLKFGEVAFIAYK--- 961 +++E+ +D +I++Y ++YT+QWL+ LKN K L+ L +F+ + Sbjct 808 -SLNLEER---LDSNDLINYYSYLYTVQWLLKDNLKNLKQDLQAKLSRTTNSFLVWSLAS 863 Query 962 -----NTETTNFS-----------------------------NPQGVFG-SYFNYENSAS 986 NT + S NP VFG S +N+ N+ + Sbjct 864 DKDRNNTASQAMSVSSSKSVLVKMANNVASQTNQDFTKQEQQNPNYVFGSSAYNWTNNKT 923 Query 987 EVKESTQTLDPNNFFYKTTTKPTVQAIQQVASLALVQKQQMQQNSTD-HYGFTGLSTSTS 1045 S D ++ +Y + SL L+QK Q N+ +GF G+ T+TS Sbjct 924 PTVNSAAN-DISSLYYTKNNGSS------STSLTLMQKSAQQTNNQQRRFGFHGIVTNTS 976 Query 1046 S 1046 S Sbjct 977 S 977 >gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1271 Score = 100 bits (249), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 90/348 (26%), Positives = 150/348 (43%), Gaps = 21/348 (6%) Query 11 WLLTLGGF--LSTSVILAACATPSNSALQTVFKARSSQFFNGEQGSLQS--ALTTALKNP 66 W L F + + I+ AC+T + + L +Q + L +AL + Sbjct 8 WSLIALAFSGVGATAIITACSTINTANLFPTLNRSQKLIGFSDQNIINPDVVLKSALNDG 67 Query 67 VANKQFIAAPLLKALEAWYENNEDKKITQFLKDTKSNVDSQYTTAVDKVVSASRNKSLFV 126 + AL+ WY+ N D+ I+ LK + NV+ ++ +D+ A R K Sbjct 68 SGVDSILRVSFGSALQKWYQANADRNISNRLKIFEENVEDEHDNLIDEKKRADRVKWPIE 127 Query 127 QQDLLDNAGGSEATWKAQKLLEQLISDFASRVFQKNYLNYKKDGQVSTGPFTYDELHKEE 186 Q D GG++ +WK KL ++LI+DF S +F N T T E + E+ Sbjct 128 VQKEYDQFGGNQESWKKLKLYDRLITDFQSLIFNNISANVSLVNSSDTSVATTKE-NIEK 186 Query 187 SWKNFEFSAPRFSETNDDFFAKIQSQVFDQWVEYTDPTLISQVNYKYSAPSQGLGQIYNR 246 + +F ++ N DFF +Q+ +F QW+ +P L++Q ++ Y +P GLG IY+ Sbjct 187 TENKLKFINSNLNDVNGDFFTNLQAYLFSQWLIEENPFLLNQASFNYQSPIAGLGSIYDE 246 Query 247 EKL-KDKLTPSYAFPFFAEEKDIAPNQNVGNKRWKQLVKGEGAITDNNIGQSGTNSQKTG 305 + L SY FP F + + N K +++ K Q T + Sbjct 247 NAIGASNLNLSYNFPAFQDPSESGGQTNSA-KLFEEFDK-----------QLQTANSSGS 294 Query 306 LLKYRNESNKGDFLDFPLNLSDTNETKQLVDASNIVDQLEAANLGAAL 353 + + D LDF S +K L+ +NI+ L+ NL AA+ Sbjct 295 SQSSAATNTRNDLLDFENKYS---ASKVLISKNNILSVLKTVNLSAAV 339 Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 102/403 (25%), Positives = 168/403 (42%), Gaps = 89/403 (22%) Query 899 ELFKLAFEASIDEKSFNVDYKAVIDHYRFIYTLQWLVDQKLKNFKSLLKTNLKFGEVAFI 958 +L K AFE +++ + + +YK + RF+ L WLV +N+K+LL+ + G AF+ Sbjct 878 DLAKKAFEKELEDPNQDAEYK----YMRFLQALMWLVKNGAQNYKNLLQQAIPIGTRAFV 933 Query 959 AY-----KNTETTN-------------------FSNPQGVFGSYFNYENSASEVKESTQT 994 ++ KN T NP GS N+ N + Sbjct 934 SWTVGYDKNPSATVSQKTKSSTSSANENPFNRFLQNPNYTQGSEINWFNDKQTPIQPDSL 993 Query 995 LDPNNFFYKTTTKPTVQAIQQVASLALVQKQQMQQNSTDHYGFTGLSTSTSSMFDASSRD 1054 L+ N Y+ T +P S+AL K Q + YGF GL+ +++ +S Sbjct 994 LESEN-TYRFTDEPFNN------SVALSNKSQGSSDKKYFYGFNGLTINSNQSISTASA- 1045 Query 1055 AILQQ--------ITKT----SLQQYGSKDQLKKIIQGTNNQLLLDRIAVQLS-GLNPST 1101 + QQ IT T +L QY K L +I T++ L+ L +N T Sbjct 1046 GLTQQLFNNYGQLITATDKAGALSQYKDKFTLWSLINKTSSDAELNAFGELLHRSVNVDT 1105 Query 1102 TNGGSGKTIATYFQVDAVGNPTLDFQAKRKLLLDLLDQ-----YQNYFGNGAQKSQRDST 1156 N + ++ G P + F K+K LL+++D+ + + G ++ Sbjct 1106 NNLS---------RFNSRGEPLISFDNKKKFLLNVVDRLDDLYFHKFEGYVGLSKAANTD 1156 Query 1157 PSGTGNYLTYQ-----NGSDKYTYT---QFTYQDIDSLSLTTTSGTNNKIAS-----DVV 1203 S T Y T Q N S T + Q T D++ +S ++ NNK S ++ Sbjct 1157 GSNTEGYKTVQTVPLTNDSSIQTLSYVIQITNDDVNKIS---SNWKNNKANSLGLKKEIF 1213 Query 1204 AALLLFQAADKGTQQLALSAINKP----------QLNIGDKRI 1236 +LL+ QA D+GTQ+LA + + Q+ +GDKR+ Sbjct 1214 MSLLIEQALDEGTQELAFLDLIRENQKQHQREHQQILVGDKRL 1256 Lambda K H a alpha 0.311 0.127 0.350 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 159011175 Query= gi|13508176|ref|NP_110125.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium [Mycoplasma pneumoniae M129] Length=572 Score E Sequences producing significant alignments: (Bits) Value gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma ge... 531 6e-179 gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma ge... 71.6 9e-15 gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma ge... 61.2 2e-11 >gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1177 Score = 531 bits (1369), Expect = 6e-179, Method: Compositional matrix adjust. Identities = 304/573 (53%), Positives = 403/573 (70%), Gaps = 25/573 (4%) Query 1 MINFLFNQMNALNNKFLERAKALNQNVNQANPTPWLNGLSAKLPYVRTNGNYEKLNNYFT 60 +I LF QM+AL+NK R LN NVNQ NPTPWLNGLS+ LPYVR +G+YEKLNNYF Sbjct 608 VIRDLFLQMDALDNKLTSRTTELNTNVNQINPTPWLNGLSSHLPYVRKSGHYEKLNNYFL 667 Query 61 FLIVKYMWKKVGNEDASLSKDSSINKLKTKTEDVNKIRDKILEDIQKKVQEFVKNKLKPT 120 FLI K +WKKVG+E ++S+++ NKLKT DV+KIRD+IL DI KV EFV N+LK T Sbjct 668 FLITKTLWKKVGSEKINISENN--NKLKTTKADVDKIRDEILSDINNKVTEFV-NQLKVT 724 Query 121 LAPRQTYSNVILLNVNNDKVWSMGANWALANLLDTSKINPLSFMLLKQTFDQNDLFKKAK 180 + +SN+IL+++NND+ + ANW+L LLD + +NPLSF LLK F N F+KAK Sbjct 725 EKSKPNFSNIILVDINNDQSLTNSANWSLNALLDVTTVNPLSFALLKNAFTSNQQFEKAK 784 Query 181 KLFEDIQSKTNGGSSGGMQGSNTSSSEGADALSKVIGNYYYNSWAKLTDKSIYGNPKDNK 240 KLFE+I+SK NG SS TSSS AD+L+KVI NYYY +W+KLT+K++YGNP + Sbjct 785 KLFEEIKSK-NGSSS-------TSSSSDADSLAKVISNYYYMTWSKLTNKAMYGNPNNGN 836 Query 241 FDDLFKLAFEDSINEKSFNVDYKAVIEHYRFIYTLEWLVNGNLKNFKDLLKANLKFGEIA 300 D+LFK AF +S++E FNV++KAVI+HYRFI+TL+WL+ NLKNFKD+L+ANLK+GEIA Sbjct 837 IDELFKKAFLESVDESGFNVNFKAVIDHYRFIFTLQWLIENNLKNFKDILQANLKYGEIA 896 Query 301 FIAY-KNTETKEFSNPQGVFGSAFNYENETNEVKI-AAQNLDPNNFFYKTTTKPEEVKTA 358 +IAY KN + +NPQG+FGS FNYEN+ + A Q +DPNNFF+KT T P Sbjct 897 YIAYDKNIISNNTNNPQGIFGSVFNYENDEHATTANANQTIDPNNFFFKTKTSPNTTP-- 954 Query 359 QNGASMMVMQQKMQSTMQDSNHYGFTGLNTSTSSMLGAATQQAILDQITKNSLQQYGSQQ 418 +M+ +Q + ++ ++ YGFTGLNT+ SSML T QA+L+ I NSL+QYGS+ Sbjct 955 --ATTMLSTRQAVSTS--NNGTYGFTGLNTTNSSMLENNTNQALLNHIAANSLKQYGSKD 1010 Query 419 ELKTLIEKTNNQLLLDRIASQLSGLNPSTTGNSNNGKGKNIATYFQLDAIGNPTLSFQQK 478 +LK I +T +QL+LD IA QLS L PS++ ++ GK ++ YFQ+DAI N L F+ K Sbjct 1011 DLKKFISETKDQLVLDNIARQLSRLTPSSSSSN----GKTLSAYFQVDAINNSALDFKAK 1066 Query 479 RKLLLDVLDQYKDFFGTNTQAAQRDSGKGGHGSYSTYQDGSDKITYLQFSYKDIDNLSLS 538 + LLL VLDQY +F ++ + + +S + G D YLQF+ DID+LSL+ Sbjct 1067 QALLLAVLDQYSSYFNSSNSPSISKRSTQTNQKFSEFNFGGDSYNYLQFTKSDIDSLSLT 1126 Query 539 DKGNSKLASDVVAALLLFQAADKGTQQLALSAI 571 N + SD+VAAL+LFQA+D GTQQLALSAI Sbjct 1127 SSTN--IESDIVAALVLFQASDTGTQQLALSAI 1157 >gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1271 Score = 71.6 bits (174), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 95/378 (25%), Positives = 158/378 (42%), Gaps = 76/378 (20%) Query 243 DLFKLAFEDSINEKSFNVDYKAVIEHYRFIYTLEWLVNGNLKNFKDLLKANLKFGEIAFI 302 DL K AFE + + + + +YK + RF+ L WLV +N+K+LL+ + G AF+ Sbjct 878 DLAKKAFEKELEDPNQDAEYK----YMRFLQALMWLVKNGAQNYKNLLQQAIPIGTRAFV 933 Query 303 AY------------------------KNTETKEFSNPQGVFGSAFNYENETNEVKIAAQN 338 ++ +N + NP GS N+ N+ + I + Sbjct 934 SWTVGYDKNPSATVSQKTKSSTSSANENPFNRFLQNPNYTQGSEINWFNDK-QTPIQPDS 992 Query 339 LDPNNFFYKTTTKPEEVKTAQNGASMMVMQQKMQSTMQDSNHYGFTGL----NTSTSSML 394 L + Y+ T +P A + K Q + YGF GL N S S+ Sbjct 993 LLESENTYRFTDEPFNNSVA--------LSNKSQGSSDKKYFYGFNGLTINSNQSISTAS 1044 Query 395 GAATQ-------QAILDQITKNSLQQYGSQQELKTLIEKTNNQLLLDRIASQLSGLNPST 447 TQ Q I +L QY + L +LI KT++ L+ L+ S Sbjct 1045 AGLTQQLFNNYGQLITATDKAGALSQYKDKFTLWSLINKTSSDAELNAFGEL---LHRSV 1101 Query 448 TGNSNNGKGKNIATYFQLDAIGNPTLSFQQKRKLLLDVLDQYKDFF--------GTNTQA 499 ++NN + ++ G P +SF K+K LL+V+D+ D + G + A Sbjct 1102 NVDTNN--------LSRFNSRGEPLISFDNKKKFLLNVVDRLDDLYFHKFEGYVGLSKAA 1153 Query 500 AQRDSGKGGHGSYSTYQDGSDK----ITY-LQFSYKDIDNLSLSDKGNSK----LASDVV 550 S G+ + T +D ++Y +Q + D++ +S + K N L ++ Sbjct 1154 NTDGSNTEGYKTVQTVPLTNDSSIQTLSYVIQITNDDVNKISSNWKNNKANSLGLKKEIF 1213 Query 551 AALLLFQAADKGTQQLAL 568 +LL+ QA D+GTQ+LA Sbjct 1214 MSLLIEQALDEGTQELAF 1231 >gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1225 Score = 61.2 bits (147), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 111/449 (25%), Positives = 195/449 (43%), Gaps = 101/449 (22%) Query 4 FLFNQMNALNNKFLERAKALNQNV--NQANPTPWLNGLSAKLPYVRTN--GNYEKLNNYF 59 +FN++ NK + NQ N+ N W+NGL+A LPY + + G+Y +L Y+ Sbjct 570 IVFNEVATAENKVALKLAERNQPFIDNERNKQIWMNGLAAVLPYEQDSKTGHYNELGIYY 629 Query 60 TFLIVKYMWKKVGNEDASLSKDSSINKLKTKTEDVNKIRDKILEDIQKKVQEFVKN--KL 117 +I KV + ++ + +S+ + ++ KI DK+ E+ +K K+ +L Sbjct 630 KDII-----DKVSSNTSNSNSNSNSSSSDPFSK---KIIDKLKENKKKVEAAVKKHVDEL 681 Query 118 KPTLAPRQTYSNVILLNV---NNDKVWSMGANWALANLLDTSKINPLSFMLLKQTFDQND 174 K ++ P YS +IL++ ++ + S+ N AL +L + + L + + F +D Sbjct 682 KVSVIPSPQYSQIILVDTKLSSDPRNTSLALNLALNAVLSSDE---LQNTIRRDYFVNDD 738 Query 175 LFKKAKKLFEDIQSKTNGGSSGGMQGSNTSSSEGADALSKVIGNYYYNSWAKLTDKSIYG 234 FK+A L + N+ ++E + Y ++ + K + SI+G Sbjct 739 QFKQAIDL-----------DKLTFKNWNSLNNENWNIFKYT---YLFDLFQKQANPSIFG 784 Query 235 N----------PKDNKFDDLFKLAFEDSINEKSFNVDYKAVIEHYRFIYTLEWLVNGNLK 284 N PK N D + +S+N + +D +I +Y ++YT++WL+ NLK Sbjct 785 NGVNESSTDNKPKINGVLD----SLYNSLNLEE-RLDSNDLINYYSYLYTVQWLLKDNLK 839 Query 285 NFKDLLKANLKFGEIAFIAYK--------NTET--------------------------- 309 N K L+A L +F+ + NT + Sbjct 840 NLKQDLQAKLSRTTNSFLVWSLASDKDRNNTASQAMSVSSSKSVLVKMANNVASQTNQDF 899 Query 310 --KEFSNPQGVFG-SAFNYENETNEVKIAAQNLDPNNFFYKTTTKPEEVKTAQNGA---S 363 +E NP VFG SA+N+ N +A N D ++ +Y T NG+ S Sbjct 900 TKQEQQNPNYVFGSSAYNWTNNKTPTVNSAAN-DISSLYY----------TKNNGSSSTS 948 Query 364 MMVMQQKMQSTMQDSNHYGFTGLNTSTSS 392 + +MQ+ Q T +GF G+ T+TSS Sbjct 949 LTLMQKSAQQTNNQQRRFGFHGIVTNTSS 977 Lambda K H a alpha 0.312 0.129 0.359 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 69395613 Query= gi|13508177|ref|NP_110126.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium [Mycoplasma pneumoniae M129] Length=345 Score E Sequences producing significant alignments: (Bits) Value gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma ge... 181 1e-52 >gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1177 Score = 181 bits (459), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/341 (38%), Positives = 191/341 (56%), Gaps = 64/341 (19%) Query 4 PFFAEEKDIPENQNVGNKRWKKLIKGEGSDDGKEKSSDDDDSSSSTKGLFGWRGDTSSGN 63 PFF ++ +IP+NQNVGNKRW++LI+G+ D +++ GL + D + GN Sbjct 259 PFFPKDGEIPQNQNVGNKRWEQLIEGK------------DGLNTAKTGLEKYILDQNQGN 306 Query 64 LFDFPNTLTDVGETKQIVDATTIVDQLEAADLGAALNLKLSFLKQDFDELPVIKKLPDNL 123 L DFP TL+D +TKQIVD+ IVDQLEAA+LGA+LNLKL L QD D+LP IK+L L Sbjct 307 LIDFPTTLSDNTQTKQIVDSLNIVDQLEAANLGASLNLKLDLLNQDKDQLPTIKELNKEL 366 Query 124 NDTIVAKSDNLEKTSKTNSTFYKDNGDSSEKQGSAESKNSPKTQLKEIFNGQNGDSGNLG 183 N+TIV +S +E +K+N+ F + N S S+N+ K+ +K+ F N DS NLG Sbjct 367 NNTIVVESTKIENHTKSNTLFCEHNTTDS-------SQNNLKSLIKDAFISSN-DSSNLG 418 Query 184 KLAEQLQKTDSTKMEARSQTWQLRNAVSLKTTNMAQSDENYLLLDAAIPAFETSSQSPQS 243 KLA+Q+ +T ++ M ++ + + +YL+ DAAIP ++++ Sbjct 419 KLAKQIHQTTTSDMMVSTKA-------------SSSTTSSYLVWDAAIP----NNKTNNG 461 Query 244 SGTISGSGALVNLTSTSVNLTQQKSSTTPLNQRIVRNSTGVKLLALEGLLYYVVGSSNKQ 303 + T+S + A + +TS N S L R+VRN GV ++ ++G YY+ + Sbjct 462 ASTVSANCANATVQNTSHN------SNNQLKLRLVRNGEGVAVIGIDGGSYYLT-----K 510 Query 304 QSSSSTIATSLAQNQSNNNQEQEINSSLQKNLLKFRAFQAK 344 SSS T E++I QK L +RAFQAK Sbjct 511 NSSSKT--------------ERDIEK--QKQFLMWRAFQAK 535 Lambda K H a alpha 0.304 0.122 0.323 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 38788810 Query= gi|13508178|ref|NP_110127.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium, : MPN436 [Mycoplasma pneumoniae M129] Length=237 Score E Sequences producing significant alignments: (Bits) Value gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma ge... 300 2e-96 gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma ge... 114 7e-31 gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma ge... 80.1 5e-19 >gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1177 Score = 300 bits (767), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 136/236 (58%), Positives = 182/236 (77%), Gaps = 1/236 (0%) Query 1 MKSFLRKPKFWLLLLGGLSTSSIILSACATPSNSALQAVFKPTSNQFFNGEHGTIQSALN 60 MK L+K KFW LL GLS S+I++ AC+TP+NSALQ VF PTS FF+G+ G+++ L Sbjct 1 MKKLLKKSKFWWFLLCGLSVSTILV-ACSTPTNSALQTVFSPTSTNFFHGQKGSLKEGLI 59 Query 61 TALRDPETNKKFVAAPLLKALEAWYENNQDKNITQFLKDTKTNVDNQYKTVVDKVVSAPR 120 TAL+ P NK FV PLLKALEAWYENN+DK I +FLKDTK NVD+QYK V+ ++S PR Sbjct 60 TALKTPSANKHFVIGPLLKALEAWYENNEDKAINKFLKDTKKNVDDQYKNTVNGLISPPR 119 Query 121 NKSLFVQQDLLDSSGGSEATWKARKLFEQLISDFASRVFQKNYLSYKENGKVSAGPFLYD 180 N+++F+QQDLLD SGGSEA+WK+++LF QLISDF +++F K++L YK NG++S GP++YD Sbjct 120 NRAVFIQQDLLDKSGGSEASWKSQQLFNQLISDFTAKLFAKDFLVYKPNGQLSTGPYIYD 179 Query 181 TISKNSNWQNIVFDAVNFPETNDDFFAKIQSEVFDQWAEYTDPTIISSVTLKYSAP 236 +S+ W++ F F ETND FAK+Q+++F+ W EYTDPT+IS T KY+AP Sbjct 180 ELSQPEKWKDFGFQEPRFSETNDALFAKLQAQIFNLWVEYTDPTLISQATFKYAAP 235 >gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1225 Score = 114 bits (286), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 10/245 (4%) Query 1 MKSFLRKPKFWLLLLGGLSTS-SIILSACATPSNSALQAVFKPTSNQFFNGEHGTIQSAL 59 MK FL + K W LLL ++ S I+ ACA P++ ++ +F+P+S F + G+I + L Sbjct 1 MKRFLHRVK-WPLLLSSIAVSLGIVAVACAQPNSRTIENLFRPSS-AFTDKNDGSINATL 58 Query 60 NTALRDPETNKKFVAAPLLKALEAWYENNQDKNITQFLKDTKTNVDNQYKTVVDKVVSAP 119 AL + E +++ L L +YE N D +I + L+ T+ DN + + + Sbjct 59 YKALENREGLTQYLTMRLAPVLRNFYEENVDDDIKRNLRTFNTDTDNSFVNQEQNLRNQY 118 Query 120 RNKSLF-VQQDLLDSSGGSEATWKARKLFEQLISDFASRVFQKNYLSYKENGKVSAGPFL 178 R L +Q D+LD++GG++A WK R + +++ DF +++F KN++ Y + L Sbjct 119 RGDYLVRLQTDILDNTGGNQANWKLRDVNNKIVDDFINKLFTKNFVEYVDKSVGVLSTPL 178 Query 179 YDTISKNSNWQNIVFDA------VNFPETNDDFFAKIQSEVFDQWAEYTDPTIISSVTLK 232 I SNW NI A ND +A IQ ++ DQ+ +P ++S V Sbjct 179 KGLIENQSNWNNIKIQAKFVDKNKRLRINNDAVYAAIQDKLLDQFVTNENPNLVSRVVFT 238 Query 233 YSAPN 237 PN Sbjct 239 NETPN 243 >gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1271 Score = 80.1 bits (196), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query 13 LLLGGLSTSSIILSACATPSNSALQAVFKPTSNQFFNGEHGTIQS--ALNTALRDPETNK 70 L G+ ++II +AC+T + + L + + I L +AL D Sbjct 13 LAFSGVGATAII-TACSTINTANLFPTLNRSQKLIGFSDQNIINPDVVLKSALNDGSGVD 71 Query 71 KFVAAPLLKALEAWYENNQDKNITQFLKDTKTNVDNQYKTVVDKVVSAPRNKSLFVQQDL 130 + AL+ WY+ N D+NI+ LK + NV++++ ++D+ A R K Q Sbjct 72 SILRVSFGSALQKWYQANADRNISNRLKIFEENVEDEHDNLIDEKKRADRVKWPIEVQKE 131 Query 131 LDSSGGSEATWKARKLFEQLISDFASRVFQKNYLSYK---ENGKVSAGPFLYDTISKNSN 187 D GG++ +WK KL+++LI+DF S +F N +S N ++ + I K N Sbjct 132 YDQFGGNQESWKKLKLYDRLITDFQSLIF--NNISANVSLVNSSDTSVATTKENIEKTEN 189 Query 188 WQNIVFDAVNFPETNDDFFAKIQSEVFDQWAEYTDPTIISSVTLKYSAP 236 + F N + N DFF +Q+ +F QW +P +++ + Y +P Sbjct 190 --KLKFINSNLNDVNGDFFTNLQAYLFSQWLIEENPFLLNQASFNYQSP 236 Lambda K H a alpha 0.315 0.129 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24169873 Query= gi|13508179|ref|NP_110128.1| Mollicute specific lipoprotein, MG307 homolog, from M. genitalium [Mycoplasma pneumoniae M129] Length=726 Score E Sequences producing significant alignments: (Bits) Value gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma ge... 686 0.0 gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma ge... 108 7e-26 >gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1177 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/728 (53%), Positives = 501/728 (69%), Gaps = 30/728 (4%) Query 4 QGETKDQYNTFGLRLVRNSVGVSVLGLDGFVKFIKGGSGGSNGGSSSAKKIDKEEQKKFL 63 Q + + N LRLVRN GV+V+G+DG GS SSS + D E+QK+FL Sbjct 475 QNTSHNSNNQLKLRLVRNGEGVAVIGIDG-------GSYYLTKNSSSKTERDIEKQKQFL 527 Query 64 KFRAFQAKIGTFYNTNFAFSFPLNETLKGWFDKHRGLILANALVKVTLDTKEKASKALVD 123 +RAFQAK TF N+ ++FSFPLNETLK WF+K++ LIL NAL+ K+K S A+ Sbjct 528 MWRAFQAKTNTFKNSLYSFSFPLNETLKTWFEKNQELILVNALINTDFQKKDKGSDAMQK 587 Query 124 AFSSYKNWLSEYTPVGLATTMISFYFDQMKALNNKLLERVRSLNQNVNQANPTPWLNGLS 183 AF+ YK + ++ PV LAT +I F QM AL+NKL R LN NVNQ NPTPWLNGLS Sbjct 588 AFNDYKELMQKFAPVALATNVIRDLFLQMDALDNKLTSRTTELNTNVNQINPTPWLNGLS 647 Query 184 AKLPYVNTNGNYEKLNNYFTFLITKVLWPKVGTEDTNVSEEKSKLKTKTEDVNKIREKIL 243 + LPYV +G+YEKLNNYF FLITK LW KVG+E N+SE +KLKT DV+KIR++IL Sbjct 648 SHLPYVRKSGHYEKLNNYFLFLITKTLWKKVGSEKINISENNNKLKTTKADVDKIRDEIL 707 Query 244 NNIDSKLKTFVQKLKPTLAPRPAYSNVILLNINNDKVWSAGANWSLAVLLDPKKVNPLSF 303 ++I++K+ FV +LK T +P +SN+IL++INND+ + ANWSL LLD VNPLSF Sbjct 708 SDINNKVTEFVNQLKVTEKSKPNFSNIILVDINNDQSLTNSANWSLNALLDVTTVNPLSF 767 Query 304 MLLKQMFDQNSLFKKAKTLFENIQNKAKTSGSGKSGTTTNDDADALSKVIGNYYYNTWAK 363 LLK F N F+KAK LFE I++K +G S T+++ DAD+L+KVI NYYY TW+K Sbjct 768 ALLKNAFTSNQQFEKAKKLFEEIKSK-----NGSSSTSSSSDADSLAKVISNYYYMTWSK 822 Query 364 LTDKSIYGNLKDDKFDDLFKLAFDSSINEKSFNVDYKAVIEHYRFIYTLEWLVDKNLKNF 423 LT+K++YGN + D+LFK AF S++E FNV++KAVI+HYRFI+TL+WL++ NLKNF Sbjct 823 LTNKAMYGNPNNGNIDELFKKAFLESVDESGFNVNFKAVIDHYRFIFTLQWLIENNLKNF 882 Query 424 KDLLKANLKFGEIAFIAY-KNTETQNFSNPQGIFGSYFNYENETNAAKS-ATQIIDPNSF 481 KD+L+ANLK+GEIA+IAY KN + N +NPQGIFGS FNYEN+ +A + A Q IDPN+F Sbjct 883 KDILQANLKYGEIAYIAYDKNIISNNTNNPQGIFGSVFNYENDEHATTANANQTIDPNNF 942 Query 482 FYKTTTKPE---AKTTQSANTAVMVQNTQMNNQQTNSYGFTGLSTSSGSMLGAATQQAIL 538 F+KT T P A T S AV N +YGFTGL+T++ SML T QA+L Sbjct 943 FFKTKTSPNTTPATTMLSTRQAVSTSN-------NGTYGFTGLNTTNSSMLENNTNQALL 995 Query 539 DQITKTSLQQYGSQADLKKIIGETKNQLLLDRIANQLIALKPNTSGNSGTQKTIAAYFQT 598 + I SL+QYGS+ DLKK I ETK+QL+LD IA QL L P++S ++G KT++AYFQ Sbjct 996 NHIAANSLKQYGSKDDLKKFISETKDQLVLDNIARQLSRLTPSSSSSNG--KTLSAYFQV 1053 Query 599 DAVGNPTLDFKAKQKLLLDVLDQYKDFFGNNAQAVQRDSGKSGTGNYLTYTDGSDKITYL 658 DA+ N LDFKAKQ LLL VLDQY +F ++ + + G D YL Sbjct 1054 DAINNSALDFKAKQALLLAVLDQYSSYFNSSNSPSISKRSTQTNQKFSEFNFGGDSYNYL 1113 Query 659 QFSYKDIDGLSLSSSNGTSSKFASDVVAALLLFQAAYKGTQQLALSSINKPQLPIGDKRI 718 QF+ DID LSL+S S+ SD+VAAL+LFQA+ GTQQLALS+I KPQ IGDKRI Sbjct 1114 QFTKSDIDSLSLTS----STNIESDIVAALVLFQASDTGTQQLALSAIEKPQFRIGDKRI 1169 Query 719 KTGIDLLK 726 ++G++LLK Sbjct 1170 QSGLNLLK 1177 >gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1225 Score = 108 bits (269), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 155/577 (27%), Positives = 256/577 (44%), Gaps = 99/577 (17%) Query 8 KDQYNTFGLRLVRNSVGVSVLGLDGFVKFIKGGSGGSNGGSSSAKKIDKEEQKKFLKFRA 67 KD + L L R G+ ++G+DG GG S G D +QK+FL FRA Sbjct 443 KDNNSQPDLILARGKDGIHLMGVDG------GGYYLSESGR------DVNKQKQFLLFRA 490 Query 68 FQAKIGTFYNTNFAFSFPLNETLKGWFDKHRGLILANALVKVTLDTKEK------ASKAL 121 Q K G +TN + F L + +K FDK+R L L NAL K+ +D+KE K Sbjct 491 LQTKYG-LIDTNTTYDFKLFDEVKKHFDKNRVLFLFNALFKL-VDSKESNFLSFPQFKKF 548 Query 122 VDAFSSYKNWLSEYTPVGLATTMISFYFDQMKALNNKLLERVRSLNQNV--NQANPTPWL 179 D+ + KN L + + + F+++ NK+ ++ NQ N+ N W+ Sbjct 549 SDSIITVKNELKDL----VESQYQQIVFNEVATAENKVALKLAERNQPFIDNERNKQIWM 604 Query 180 NGLSAKLPYVNTN--GNYEKLNNYFTFLITKVLWPKVGTEDTNVSEEKSKLKTKTEDVNK 237 NGL+A LPY + G+Y +L Y+ +I KV + + S K ++K Sbjct 605 NGLAAVLPYEQDSKTGHYNELGIYYKDIIDKVSSNTSNSNSNSNSSSSDPFSKKI--IDK 662 Query 238 IREKILNNIDSKLKTFVQKLKPTLAPRPAYSNVILLNINNDKVWSAGANWSLAVLLDPKK 297 ++E +++ +K V +LK ++ P P YS +IL++ K+ S N SLA+ L Sbjct 663 LKENKKK-VEAAVKKHVDELKVSVIPSPQYSQIILVDT---KLSSDPRNTSLALNLALNA 718 Query 298 V---NPLSFMLLKQMFDQNSLFKKAKTLFENIQNKAKTSGSGKSGTTTNDDADALSKVIG 354 V + L + + F + FK+A L + K+ + N++ + K Sbjct 719 VLSSDELQNTIRRDYFVNDDQFKQAIDL---------DKLTFKNWNSLNNENWNIFKYT- 768 Query 355 NYYYNTWAKLTDKSIYGN-LKDDKFDDLFKL--AFDSSINEKSF--NVDYKAVIEHYRFI 409 Y ++ + K + SI+GN + + D+ K+ DS N + +D +I +Y ++ Sbjct 769 -YLFDLFQKQANPSIFGNGVNESSTDNKPKINGVLDSLYNSLNLEERLDSNDLINYYSYL 827 Query 410 YTLEWLVDKNLKNFKDLLKANLKFGEIAFIAYK--------NTETQNF------------ 449 YT++WL+ NLKN K L+A L +F+ + NT +Q Sbjct 828 YTVQWLLKDNLKNLKQDLQAKLSRTTNSFLVWSLASDKDRNNTASQAMSVSSSKSVLVKM 887 Query 450 -----------------SNPQGIFG-SYFNY-ENETNAAKSATQIIDPNSFFYKTTTKPE 490 NP +FG S +N+ N+T SA D +S +Y TK Sbjct 888 ANNVASQTNQDFTKQEQQNPNYVFGSSAYNWTNNKTPTVNSAAN--DISSLYY---TKNN 942 Query 491 AKTTQSANTAVMVQNTQMNNQQTNSYGFTGLSTSSGS 527 ++ S +M ++ Q N Q +GF G+ T++ S Sbjct 943 GSSSTSL--TLMQKSAQQTNNQQRRFGFHGIVTNTSS 977 Lambda K H a alpha 0.313 0.130 0.364 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 89990989 Query= gi|13508180|ref|NP_110129.1| hypothetical protein MPN441 [Mycoplasma pneumoniae M129] Length=102 ***** No hits found ***** Lambda K H a alpha 0.322 0.128 0.424 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6505708 Query= gi|13508181|ref|NP_110130.1| species specific lipoprotein [Mycoplasma pneumoniae M129] Length=150 Score E Sequences producing significant alignments: (Bits) Value gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma ge... 171 6e-52 >gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1177 Score = 171 bits (433), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 82/136 (60%), Positives = 103/136 (76%), Gaps = 1/136 (1%) Query 1 MKKLLIKPQFWFLTLGGFISSSVILVACATPSNSALQTVFKARSNQFFNGEQGSLQNALA 60 MKKLL K +FW+ L G +S S ILVAC+TP+NSALQTVF S FF+G++GSL+ L Sbjct 1 MKKLLKKSKFWWFLLCG-LSVSTILVACSTPTNSALQTVFSPTSTNFFHGQKGSLKEGLI 59 Query 61 TALKDPEANKQFVAAPLLKALTAWYENNQDKQVTQFFKDTKKSVDEQYNQAVDKVVSASR 120 TALK P ANK FV PLLKAL AWYENN+DK + +F KDTKK+VD+QY V+ ++S R Sbjct 60 TALKTPSANKHFVIGPLLKALEAWYENNEDKAINKFLKDTKKNVDDQYKNTVNGLISPPR 119 Query 121 NKNLFVQQDLLDSAGG 136 N+ +F+QQDLLD +GG Sbjct 120 NRAVFIQQDLLDKSGG 135 Lambda K H a alpha 0.316 0.128 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12653019 Query= gi|13508182|ref|NP_110131.1| RNA helicase, eIF4-A translation initiation factor [Mycoplasma pneumoniae M129] Length=409 Score E Sequences producing significant alignments: (Bits) Value gi|12045164|ref|NP_072975.1| ATP-dependent RNA helicase, putative... 459 3e-163 gi|12045285|ref|NP_073096.1| ATP-dependent RNA helicase (deaD) [M... 95.1 4e-23 >gi|12045164|ref|NP_072975.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length=410 Score = 459 bits (1182), Expect = 3e-163, Method: Compositional matrix adjust. Identities = 241/410 (59%), Positives = 301/410 (73%), Gaps = 1/410 (0%) Query 1 MHFIQPLQAFLQTKHIVEFSSIQQAVFKVWPRQNVVGIAETGSGKTFAYLLPALNQIDVT 60 M F ++ FL K IVEF+ IQQAVFK+WP QN++GIAETGSGKTFAYLLP L++I+ + Sbjct 1 MQFSSSIRQFLDKKRIVEFTKIQQAVFKLWPFQNIIGIAETGSGKTFAYLLPLLDKINTS 60 Query 61 LNKPQAVVFVPTKELKWQILTILNDIKASFTGLKVSENFNSNAHLIVSLIGKDIILHETI 120 L++PQAV+FVPTKEL+WQI+ IL +IK F + +F+S A LIVSL+ + + + Sbjct 61 LDQPQAVIFVPTKELQWQIINILTEIKKYFKTFTFATSFSSKAQLIVSLLNEKYLFTSKV 120 Query 121 KYVVFDEVDMFLEDSSQAEWINCVQLFQKHKPHFGFFSATLFNEQLQQIRKQVAPLTVVN 180 +YVVFDE+DMFLE SS +W+ CV LFQK KP F FFSATLFN+QLQ I+KQV V+N Sbjct 121 RYVVFDEIDMFLEQSSIQQWLECVHLFQKAKPLFAFFSATLFNQQLQIIKKQVINTKVIN 180 Query 181 QKKRAWKHSLVKHFLLNLNGQEPFAGLLALLNYHHNEQVLVFCSNAKSLKQLTSLLAHNQ 240 + W H LVKHF+++LN + F+GLLALL +H N+Q++VFCSN KSLKQLT LL++N Sbjct 181 LHPKQWIHPLVKHFVVHLNTENRFSGLLALLKHHQNQQIIVFCSNQKSLKQLTQLLSNNN 240 Query 241 LSFKSLHGQLTPNERKHIFTSAANNTVRVLVVSDLLARGIDLPHFSVVISWDLPLVDSFY 300 +SF S++G LT ERK+ FT A NN +++LVVSDL +RGIDL +FSVVISWDLP +DSFY Sbjct 241 ISFGSIYGSLTYQERKNNFTKATNNKLKLLVVSDLFSRGIDLNYFSVVISWDLPKIDSFY 300 Query 301 IHRSGRVARFNSWGNSYVFDLPHNQHKLTKFAHKGILFNSVHLERDGTLKF-PQLKQSKQ 359 IHRSGRVAR NSWG SY+F NQ KL K KGI F +V L +G LKF + Q Sbjct 301 IHRSGRVARLNSWGRSYLFWNDQNQSKLNKLIAKGIKFQNVSLTSNGDLKFLTENNQKTT 360 Query 360 KPAVSSELKTAIKRIKAGYKKVKPNYKKRQKQQIAELFAKRKQRRSWKNF 409 K +S+ IK IKA YKKVKPNYKK QKQQI L +K+ RSWKNF Sbjct 361 KKPLSTLQIKKIKAIKAKYKKVKPNYKKYQKQQIQNLLINKKKPRSWKNF 410 >gi|12045285|ref|NP_073096.1| ATP-dependent RNA helicase (deaD) [Mycoplasma genitalium G-37] Length=449 Score = 95.1 bits (235), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 104/427 (24%), Positives = 183/427 (43%), Gaps = 42/427 (10%) Query 5 QPLQAFLQTKHIVEFSSIQQ-AVFKVWPRQNVVGIAETGSGKTFAYLLPALNQI---DVT 60 Q L L HI + + IQQ ++ + +N++ + TG+GKT A+ +P + ++ D T Sbjct 12 QTLIETLNALHINKPTKIQQISIPQFLSEKNLIVHSPTGTGKTAAFAIPIIEKLLKEDQT 71 Query 61 LNKPQAVVFVPTKELKWQILTILNDIK-----------ASFTGLKVSENFNSNAHLIVSL 109 KP +V PT+EL QI T ++I K + +N +IV Sbjct 72 A-KP-TLVIAPTRELVEQIKTTFSNIAKNKKLRIISLIGGVPAWKQIKKIKTNPQIIVGT 129 Query 110 IGKDIILHE-------TIKYVVFDEVDMFLEDSSQAEWINCVQLFQKHKPHFGFFSATLF 162 +G+ + L E +++++ DEVD+ L+ + + N ++ K +SA+ + Sbjct 130 MGRIMDLLERKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNLLEQINSFK-QIAVYSAS-Y 187 Query 163 NEQLQQIRKQVAPLTVV------NQKKRAWKHSLVKHFLLNLNGQEPFAGLLALLNYHHN 216 N++ I KQ+ + N+ L+K F+ L + L +L+ Sbjct 188 NQEAINIAKQITNNGIFIGSPEFNKDANTNNDKLIKQFVCYLFSDQKKQALYSLIKTAQV 247 Query 217 EQVLVFCSNAKSLKQLTSLLAHNQLSFKSLHG---QLTPNERKHIFTSAANNTVRVLVVS 273 + ++VFC K + L L N+L +LHG Q IF + T+ LV + Sbjct 248 KSIIVFCDTKKLVDDLHVFLRKNELRTFALHGDKKQFIRERNLKIFANTKQPTI--LVTT 305 Query 274 DLLARGIDLPHFSVVISWDLPLVDSFYIHRSGRVARFNSWGNSYVFDLPHNQHKLTKFAH 333 DL+ RGI + +VI++ L YI+R GR R N G F + K Sbjct 306 DLIGRGIHVEAIDMVINYSACLNLEAYINRMGRTGRNNHKGTCVTFCTSQEKKVFLKMVE 365 Query 334 KGILFNSVHLERDGTLKFPQLKQSKQKPAVSSELKTAIKRIKAGYKKVKPNYKKRQKQQI 393 K I N + + +K LK A + + ++ ++ Y KP + ++ Sbjct 366 K-ITDNRIAECKQMEIKLIPLKNK----AKTKKGGISLDCVQKIYANAKPYDRNKRVPLA 420 Query 394 AELFAKR 400 ++LF R Sbjct 421 SDLFKSR 427 Lambda K H a alpha 0.322 0.135 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 47240592 Query= gi|13508183|ref|NP_110132.1| hypothetical protein MPN444 [Mycoplasma pneumoniae M129] Length=1325 Score E Sequences producing significant alignments: (Bits) Value gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma ge... 1451 0.0 gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma ge... 216 6e-59 gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma ge... 77.8 6e-16 >gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1225 Score = 1451 bits (3755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 780/1332 (59%), Positives = 958/1332 (72%), Gaps = 114/1332 (9%) Query 1 MHTFTRKVKWPFMFTAIGLTFGIVAVACAQPTASTVEGLFKPSSAFADRTDFSLSSILQK 60 M F +VKWP + ++I ++ GIVAVACAQP + T+E LF+PSSAF D+ D S+++ L K Sbjct 1 MKRFLHRVKWPLLLSSIAVSLGIVAVACAQPNSRTIENLFRPSSAFTDKNDGSINATLYK 60 Query 61 SLINRESFNQYLAMRLAPVLRTFYEDNYDTDIKERLNGFTADTDNAFVSQEQNLRNQFRE 120 +L NRE QYL MRLAPVLR FYE+N D DIK L F DTDN+FV+QEQNLRNQ+R Sbjct 61 ALENREGLTQYLTMRLAPVLRNFYEENVDDDIKRNLRTFNTDTDNSFVNQEQNLRNQYRG 120 Query 121 NYLVHLQTDIFDNTGGNQAAWKLRDVNNKIIDDFISRIFAKNFVEYVQDGVGPLTKPTKS 180 +YLV LQTDI DNTGGNQA WKLRDVNNKI+DDFI+++F KNFVEYV VG L+ P K Sbjct 121 DYLVRLQTDILDNTGGNQANWKLRDVNNKIVDDFINKLFTKNFVEYVDKSVGVLSTPLKG 180 Query 181 LIENTSNFKNIKLQPKFVNKNAKLKINNDAVYAAIQDKLLDQFITNENPNLVSRVVFTNE 240 LIEN SN+ NIK+Q KFV+KN +L+INNDAVYAAIQDKLLDQF+TNENPNLVSRVVFTNE Sbjct 181 LIENQSNWNNIKIQAKFVDKNKRLRINNDAVYAAIQDKLLDQFVTNENPNLVSRVVFTNE 240 Query 241 TPVDGFDNYFNTKVIQSPTPSYQFQVFNKYNQQSGGTKGANGFNLLASNLKSYKNDQSKG 300 TP DGFDNYFN +I+SPTPSYQFQVFNKYNQQ KGANGF++LASNL+SY N +K Sbjct 241 TPNDGFDNYFNPDLIKSPTPSYQFQVFNKYNQQDNSIKGANGFHILASNLQSYVNTNNKT 300 Query 301 IDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGADSKEVDSLIKDK 360 IDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGA+ E L KDK Sbjct 301 IDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAAFIQGYLALQKKSKGAEQTEYTKLEKDK 360 Query 361 SIIENFFVDNNTQAAAAARAASSSSEGTIQLKTASDGGGTTQSTVHKTDLVKIFGDK--- 417 SIIENFFV+NN+ AA A+SSS +TVHKTDL KIF + Sbjct 361 SIIENFFVENNSAKAAMKSASSSSQT----------------TTVHKTDLAKIFKENETT 404 Query 418 ---DVFAGEYKQQIGNTNANQTGGGGSGGGGGTSTGSSTGSSTETTTGNSSKAVVDLIEV 474 DVF GEY+++ N +ST + +++ A+VDL E+ Sbjct 405 KSTDVFKGEYQKKFSN-----------------------ATSTSNSDSSNNSAIVDLKEL 441 Query 475 KKDSSSQPDYILSRGKDGIHLMAVDGGSHYLTESGRDVAKQKKFLLFRALQTKYGLVDTD 534 KKD++SQPD IL+RGKDGIHLM VDGG +YL+ESGRDV KQK+FLLFRALQTKYGL+DT+ Sbjct 442 KKDNNSQPDLILARGKDGIHLMGVDGGGYYLSESGRDVNKQKQFLLFRALQTKYGLIDTN 501 Query 535 TTYDFKLFDEVKKYFDTNRILFLFEALLDLSSDTNNKDNFLSYPQFKKFADSIKSIEKDL 594 TTYDFKLFDEVKK+FD NR+LFLF AL L + NFLS+PQFKKF+DSI +++ +L Sbjct 502 TTYDFKLFDEVKKHFDKNRVLFLFNALFKLVDSK--ESNFLSFPQFKKFSDSIITVKNEL 559 Query 595 KELVQAHYKQAVFNETAVAENKVTLKLAERNQPFIDNERNNQIEQNGLAAKLPYEQDAKT 654 K+LV++ Y+Q VFNE A AENKV LKLAERNQPFIDNERN QI NGLAA LPYEQD+KT Sbjct 560 KDLVESQYQQIVFNEVATAENKVALKLAERNQPFIDNERNKQIWMNGLAAVLPYEQDSKT 619 Query 655 GHYNDLGNYYKDIIDNVDKKGTSTVKTTSSNTGQTKNFSEEVVSKLKDNKKKVEEAAKKH 714 GHYN+LG YYKDIID V +++ ++S++ FS++++ KLK+NKKKVE A KKH Sbjct 620 GHYNELGIYYKDIIDKVSSNTSNSNSNSNSSSSDP--FSKKIIDKLKENKKKVEAAVKKH 677 Query 715 VEALKVFTIPSPLYSQVILVQTKLSFTPESTSLGLNLALNNYLTSTELQNSIKLSYFQED 774 V+ LKV IPSP YSQ+ILV TKLS P +TSL LNLALN L+S ELQN+I+ YF D Sbjct 678 VDELKVSVIPSPQYSQIILVDTKLSSDPRNTSLALNLALNAVLSSDELQNTIRRDYFVND 737 Query 775 EAFKKIIDITNLTFSQQSGGTGGTNGNNNLTADNWKIFKETYLLDLFESQAQKSIFGHVG 834 + FK+ ID+ LTF N+L +NW IFK TYL DLF+ QA SIFG+ G Sbjct 738 DQFKQAIDLDKLTFKNW----------NSLNNENWNIFKYTYLFDLFQKQANPSIFGN-G 786 Query 835 SSDKNSSTKTGIEGVLDTLYSSLNLEERLDSDDVIDYLSYLYTAHWLLKDNLKNYKQSLQ 894 ++ ++ K I GVLD+LY+SLNLEERLDS+D+I+Y SYLYT WLLKDNLKN KQ LQ Sbjct 787 VNESSTDNKPKINGVLDSLYNSLNLEERLDSNDLINYYSYLYTVQWLLKDNLKNLKQDLQ 846 Query 895 SKLSRTSNAFLVWSVDSEKNKNDSQSTLSSTASSTSNTGLIQLRSVVSLAQNQAAGQGGD 954 +KLSRT+N+FLVWS+ S+K++N++ S S +SS S + N A Q Sbjct 847 AKLSRTTNSFLVWSLASDKDRNNTASQAMSVSSSKSVLVKM---------ANNVASQT-- 895 Query 955 NNSDITQTEVKNPNFVFGSSVYDWTNSKTPEVNRAADDTSSFFYTKSSSSSTGAAQSSAT 1014 N D T+ E +NPN+VFGSS Y+WTN+KTP VN AA+D SS +YTK++ G++ +S T Sbjct 896 -NQDFTKQEQQNPNYVFGSSAYNWTNNKTPTVNSAANDISSLYYTKNN----GSSSTSLT 950 Query 1015 VLRSLNQASGMTTKTAKNRYGFRGIVTSSTSGSLPEAVSRRLFKQFVNQTEKGVKVGGQ- 1073 ++ Q S T + R+GF GIVT+++S +LP+AV RLF FV+Q+EK GGQ Sbjct 951 LM----QKSAQQTNNQQRRFGFHGIVTNTSSNNLPDAVRNRLFTSFVSQSEKSSSNGGQA 1006 Query 1074 MLITTAKSGKATLVLKQQADDAESTTNNAYKGALFSFGSMDNLKNIINGIQTQTEFDALY 1133 L +T SG + YKGALFSFGS+ L I+ I TQ EFDALY Sbjct 1007 QLQSTQSSGSNETI---------------YKGALFSFGSLTKLIETIDNIPTQAEFDALY 1051 Query 1134 NHLTSDLNIDVTGVDKNKTLTEQKTSLTSFVDSNFKQSTQSAQRGDTSARSARSATVQIK 1193 NHLTS+LNI+VTGVD++K+L EQKT+L +F +SNF + TVQ+K Sbjct 1052 NHLTSNLNINVTGVDRSKSLQEQKTNLKNFANSNFN----------------NTQTVQLK 1095 Query 1194 KTQEDNQNTNYKDVFSRFDGYIGDNKVEEKNYTSYQFLSDGGKYHATFVKQVNLDDVEKI 1253 + Q N+N+ DVFSRF+GYIG NK NY+SY FL D YHA + KQ+NL+DV + Sbjct 1096 QAQSKTNNSNFNDVFSRFEGYIGTNKTS--NYSSYNFLQDNQIYHAVYAKQINLEDVSML 1153 Query 1254 GTDSLKQEDSSKDKRLNLSLEEFLAAIALEALDPNNQTQAINALISGNKKGLVKVGDFRI 1313 G+DSL DS+ KRL+LSLEEFL+ +ALEAL+PNNQTQAINALI+ K GLV+VGD R+ Sbjct 1154 GSDSLNSTDSNNSKRLDLSLEEFLSTVALEALNPNNQTQAINALIANAKNGLVRVGDNRL 1213 Query 1314 FSSISAQWVRRF 1325 FS+IS+QWVR+F Sbjct 1214 FSAISSQWVRKF 1225 >gi|12045163|ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1177 Score = 216 bits (550), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 275/1114 (25%), Positives = 484/1114 (43%), Gaps = 199/1114 (18%) Query 1 MHTFTRKVKWPFMFTAIGLTFGIVAVACAQPTASTVEGLFKPSSA-FADRTDFSLSSILQ 59 M +K K+ + F GL+ + VAC+ PT S ++ +F P+S F SL L Sbjct 1 MKKLLKKSKF-WWFLLCGLSVSTILVACSTPTNSALQTVFSPTSTNFFHGQKGSLKEGLI 59 Query 60 KSLINRESFNQYLAMRLAPVLRTFYEDNYDTDIKERLNGFTADTDNAFVSQEQNLRNQF- 118 +L + ++ L L +YE+N D I N F DT Q +N N Sbjct 60 TALKTPSANKHFVIGPLLKALEAWYENNEDKAI----NKFLKDTKKNVDDQYKNTVNGLI 115 Query 119 --RENYLVHLQTDIFDNTGGNQAAWKLRDVNNKIIDDFISRIFAKNFVEYVQDG---VGP 173 N V +Q D+ D +GG++A+WK + + N++I DF +++FAK+F+ Y +G GP Sbjct 116 SPPRNRAVFIQQDLLDKSGGSEASWKSQQLFNQLISDFTAKLFAKDFLVYKPNGQLSTGP 175 Query 174 -----LTKPTKSLIENTSNFKNIKLQ-PKFVNKNAKLKINNDAVYAAIQDKLLDQFITNE 227 L++P K +K+ Q P+F NDA++A +Q ++ + ++ Sbjct 176 YIYDELSQPEK--------WKDFGFQEPRFSE-------TNDALFAKLQAQIFNLWVEYT 220 Query 228 NPNLVSRVVFTNETPVDGFDNYFNTKVIQSP-TPSYQFQVFNK-----YNQQSGGTK--- 278 +P L+S+ F P G +NT+ ++ TPSY F F K NQ G + Sbjct 221 DPTLISQATFKYAAPQQGLGQVYNTEKLKDKLTPSYAFPFFPKDGEIPQNQNVGNKRWEQ 280 Query 279 ---GANGFNLLASNLKSYKNDQSKG--IDIPNKFSSDSGGKLLLKASDMFDTFDPSFSAA 333 G +G N + L+ Y DQ++G ID P S ++ K ++ + ++ D + + A Sbjct 281 LIEGKDGLNTAKTGLEKYILDQNQGNLIDFPTTLSDNTQTKQIVDSLNIVDQLEAANLGA 340 Query 334 FIQGYLAL--QKKSKGADSKEVDSLIKDKSIIENFFVDNNTQAAA--AARAASSSSEGTI 389 + L L Q K + KE++ + + ++E+ ++N+T++ + SS+ + Sbjct 341 SLNLKLDLLNQDKDQLPTIKELNKELNNTIVVESTKIENHTKSNTLFCEHNTTDSSQNNL 400 Query 390 Q--LKTA------SDGGGTTQSTVHKT---DLVKIFGDKDVFAGEYKQQIGNTNANQTGG 438 + +K A S G +H+T D++ Y N+T Sbjct 401 KSLIKDAFISSNDSSNLGKLAKQIHQTTTSDMMVSTKASSSTTSSYLVWDAAIPNNKTNN 460 Query 439 GGSGGGGGTSTGSSTGSSTETTTGNSSKAVVDLIEVKKDSSSQPDYILSRGKDGIHLMAV 498 G S T + N + A V +S++Q L R +G+ ++ + Sbjct 461 GAS-----------------TVSANCANATVQ--NTSHNSNNQLKLRLVRNGEGVAVIGI 501 Query 499 DGGSHYLTESG-----RDVAKQKKFLLFRALQTKYG-LVDTDTTYDFKLFDEVKKYFDTN 552 DGGS+YLT++ RD+ KQK+FL++RA Q K ++ ++ F L + +K +F+ N Sbjct 502 DGGSYYLTKNSSSKTERDIEKQKQFLMWRAFQAKTNTFKNSLYSFSFPLNETLKTWFEKN 561 Query 553 RILFLFEALLDLSSDTNNKDNFLSYPQFKKFADSIKSIEKDLKELVQAHYKQA------- 605 + L L AL++ +D KD K +D+++ D KEL+Q A Sbjct 562 QELILVNALIN--TDFQKKD---------KGSDAMQKAFNDYKELMQKFAPVALATNVIR 610 Query 606 -VFNETAVAENKVTLKLAERNQPFIDNERNNQIEQNGLAAKLPYEQDAKTGHYNDLGNYY 664 +F + +NK+T + E N N+ N NGL++ LPY + K+GHY L NY+ Sbjct 611 DLFLQMDALDNKLTSRTTELNTNV--NQINPTPWLNGLSSHLPYVR--KSGHYEKLNNYF 666 Query 665 KDIIDNVDKKGTSTVKTTSSNTGQTKNFSEEVVSKLKDN-KKKVEEAAKKHVEALKVFTI 723 +I K + K S ++ V K++D + + V LKV Sbjct 667 LFLITKTLWKKVGSEKINISENNNKLKTTKADVDKIRDEILSDINNKVTEFVNQLKVTEK 726 Query 724 PSPLYSQVILVQTKLSFTPESTSLGLNLALNNYL---TSTELQNSIKLSYFQEDEAFKKI 780 P +S +ILV +S + N +LN L T L ++ + F ++ F+K Sbjct 727 SKPNFSNIILVDIN---NDQSLTNSANWSLNALLDVTTVNPLSFALLKNAFTSNQQFEKA 783 Query 781 IDITNLTFSQQSGGTGGTNGNNNLTADNWKIFKETYLLDLFESQAQKSIFGHVGSSDKNS 840 + F + G ++ +++ AD+ Y + K+++G+ + Sbjct 784 KKL----FEEIKSKNGSSSTSSSSDADSLAKVISNYYYMTWSKLTNKAMYGNPNN----- 834 Query 841 STKTGIEGVLDTLYSSLNLEE------RLDSDDVIDYLSYLYTAHWLLKDNLKNYKQSLQ 894 G +D L+ LE ++ VID+ +++T WL+++NLKN+K LQ Sbjct 835 -------GNIDELFKKAFLESVDESGFNVNFKAVIDHYRFIFTLQWLIENNLKNFKDILQ 887 Query 895 SKLSRTSNAFLVWSVDSEKNKNDSQSTLSSTASSTSNTGLIQLRSVVSLAQNQAAGQGGD 954 + L A++ + ++++S Sbjct 888 ANLKYGEIAYIAYD-----------------------------KNIIS------------ 906 Query 955 NNSDITQTEVKNPNFVFGSSVYDWTN---SKTPEVNRAADDTSSFFYTKSSSSSTGAAQS 1011 NN++ NP +FG SV+++ N + T N+ D + FF TK+S ++T Sbjct 907 NNTN-------NPQGIFG-SVFNYENDEHATTANANQTIDPNNFFFKTKTSPNTT----- 953 Query 1012 SATVLRSLNQASGMTTKTAKNRYGFRGIVTSSTS 1045 AT + S QA + + YGF G+ T+++S Sbjct 954 PATTMLSTRQA---VSTSNNGTYGFTGLNTTNSS 984 >gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1271 Score = 77.8 bits (190), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 202/895 (23%), Positives = 349/895 (39%), Gaps = 181/895 (20%) Query 481 QPDYILSRGKDGIHLMAVDGGSHYLTESG---RDVAKQKKFLLFRALQTKYGLVDTD-TT 536 +P Y+ RG D I+ +DGG+++L S R+ KQ + LL R LQ + D + Sbjct 483 KPVYV--RGDDAIYAFHIDGGNYFLENSSPNKRNFEKQAEVLLMRFLQGQTNNFSKDNVS 540 Query 537 YDFKLF---DEVKKYFDTNRILFLFEAL---LDLSSDTNN-------------KDNFLSY 577 + LF E + + + N L L+ AL L+ + NN K+N Sbjct 541 FSVDLFGSNSEFRSWANRNTTLKLYTALTTMLENGTSNNNGQKDVCDLAKKLLKNNTNLS 600 Query 578 PQFKK---FADSIKSIEKDLKELVQAHYKQAVFNETAVAENKVTLKLAERNQPFIDNERN 634 KK F +S+ I+ + ++A K F K+ + +R +I ++ Sbjct 601 ETIKKQQDFNNSLSQIKSSYESYIKAANKLNNFRTDLANIEKLEQAIVDRANNYIKLQKE 660 Query 635 NQIEQNGLAAKLPYEQDAKTGHYNDLGNYYKDIIDNVDKKGTSTVKTTSSN-TGQTKNFS 693 + G LPY++ A G Y L ++ + D + T T+KTT++ T + Sbjct 661 AKESSIGWGQPLPYKR-ANDGSYPSLAKFFNNNSDQSSAQ-TLTLKTTAAAITSDNEPTR 718 Query 694 EEVVSKLKDNKKKVEEAAKKHVEALKVFTIPSPLYSQVILVQTKLSFTPESTSLGLNLAL 753 E+ LK +VE AK+ VE K T S YS++I +++ + + L Sbjct 719 EKNNQTLKTLTTEVENKAKELVEKWKATTYSSSQYSEIITLKSSQLNDLDLDLILSLLTD 778 Query 754 NNYLTSTELQNSIKLSYFQEDEAFKKIIDITNLTFSQQSGGTGGTNGNNNLTADNWKIFK 813 + T T + N K YF+ +F D +N G + N+L K Sbjct 779 SGIRTGT-VANIFKNWYFKNTNSFTNNFDTSNKELK------GEFSDFNDLV-------K 824 Query 814 ETYLLDLFESQAQKSIFGHVGSSDKNSSTKTGIE----------------GVLDTLYSSL 857 + + +++ K FG+ +ST T ++ +LD + Sbjct 825 QALYIRSWQNLTSKERFGYYKDLGSVNSTSTMLQMQNKAAQSHTSSSVNQTLLDLAKKAF 884 Query 858 NLE-ERLDSDDVIDYLSYLYTAHWLLKDNLKNYKQSLQSKLSRTSNAFLVWSVDSEKNKN 916 E E + D Y+ +L WL+K+ +NYK LQ + + AF+ W+V +KN + Sbjct 885 EKELEDPNQDAEYKYMRFLQALMWLVKNGAQNYKNLLQQAIPIGTRAFVSWTVGYDKNPS 944 Query 917 DSQSTLSSTASSTSNTGLIQLRSVVSLAQNQAAGQGGDNNSDITQTEVKNPNFVFGSSVY 976 + S + +++S++N ++NPN+ GS + Sbjct 945 ATVSQKTKSSTSSANENPF-------------------------NRFLQNPNYTQGSEI- 978 Query 977 DWTNSKTPEVNRAADDTSSFFYTKSSSSSTGAAQSSATVLRSLNQASGMTTKTAKNRYGF 1036 +W N K + S ++++ T +++ L N++ G + K K YGF Sbjct 979 NWFNDKQTPI-----QPDSLLESENTYRFTDEPFNNSVALS--NKSQGSSDK--KYFYGF 1029 Query 1037 RGI-VTSSTSGSLPEA-VSRRLFKQFVNQTEKGVKVGGQMLITTAKSGKATLVLKQQADD 1094 G+ + S+ S S A ++++LF + GQ++ T K+G L Q D Sbjct 1030 NGLTINSNQSISTASAGLTQQLFNNY-----------GQLITATDKAG----ALSQYKD- 1073 Query 1095 AESTTNNAYKGALFSFGSMDNLKNIINGIQTQTEFDALYNHLTSDLNIDVTGVDKNKTLT 1154 K L+S +IN + E +A L +N+D + + + Sbjct 1074 ---------KFTLWS---------LINKTSSDAELNAFGELLHRSVNVDTNNLSRFNSRG 1115 Query 1155 EQKTSLTSFVDSNFKQSTQSAQRGDTSARSARSATVQIKKTQEDNQNTNYKDVFSRFDGY 1214 E L SF D+ K R D F +F+GY Sbjct 1116 E---PLISF-DNKKKFLLNVVDRLDDL-------------------------YFHKFEGY 1146 Query 1215 IGDNKVEE---------KNYTSYQFLSDGGKYHATFVKQVNLDDVEKIGTDSLKQEDSSK 1265 +G +K K + +D ++V Q+ DDV KI ++ ++K Sbjct 1147 VGLSKAANTDGSNTEGYKTVQTVPLTNDSSIQTLSYVIQITNDDVNKISSN----WKNNK 1202 Query 1266 DKRLNLSLEEFLAAIALEALDPNNQTQAINALISGNKKGL------VKVGDFRIF 1314 L L E F++ + +ALD Q A LI N+K + VGD R++ Sbjct 1203 ANSLGLKKEIFMSLLIEQALDEGTQELAFLDLIRENQKQHQREHQQILVGDKRLY 1257 Lambda K H a alpha 0.311 0.127 0.348 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 169347563 Query= gi|13508184|ref|NP_110133.1| triacylglycerol lipase (lip) 3 [Mycoplasma pneumoniae M129] Length=289 Score E Sequences producing significant alignments: (Bits) Value gi|12045166|ref|NP_072977.1| lipase/esterase, putative [Mycoplasm... 342 4e-121 gi|12045185|ref|NP_072996.1| lipase/esterase, putative [Mycoplasm... 77.0 3e-18 >gi|12045166|ref|NP_072977.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length=268 Score = 342 bits (878), Expect = 4e-121, Method: Compositional matrix adjust. Identities = 155/263 (59%), Positives = 206/263 (78%), Gaps = 0/263 (0%) Query 21 MRLEIENGLEFVCDPFLNERGKIFFLHAFTGNITNKLSFRTHFKDYSFYGINFPGHGNSV 80 MRLEIENGLEFV DP +NE GKI F H FTGN+TNKLSFR+HF YSFY IN+PGHGNSV Sbjct 1 MRLEIENGLEFVNDPVVNELGKICFFHPFTGNLTNKLSFRSHFNRYSFYAINYPGHGNSV 60 Query 81 IHNQSELDFNFWIKLVQQFFNKYQLKNVVLFGHSIGGGLAIALTQVLTKEQIKGIILEAP 140 I+N +L+F++W+++ +QFF+K+ LK+V+LFGHSIGGGLA+ALT L+ +Q K ++LEAP Sbjct 61 INNPKQLEFSYWLEITKQFFDKHNLKDVILFGHSIGGGLAVALTNYLSSDQYKAVLLEAP 120 Query 141 LNPGIRATPPSIISALVPDTNEDFEAVQRALIYNIEQRFGANFKDFCAKQKQKMIQKYAP 200 LNP I TP +I+ L+PD + DF +Q+ L+YNIE++ GANFK++C ++KQK I + Sbjct 121 LNPAIVETPLNIVQNLIPDPDSDFAVIQKCLVYNIEKKLGANFKEYCEREKQKSIHQNQR 180 Query 201 LKVMLQPEQAEQRLQLIDAAFKRLSYPTLWIHGQEDGIVRYLPSKAYLESLHNPLIELVG 260 LKVML+P +Q + LI+AAF +L+ P LWIHG++DGI++YLPSKAY ESL+N I+ Sbjct 181 LKVMLEPSTLKQNIVLINAAFLKLNCPALWIHGKQDGIIKYLPSKAYYESLNNKQIQFKA 240 Query 261 LSNTAHTTFFEQPQQFLQLVEQF 283 + AHT +FEQPQ+FL LV F Sbjct 241 IEAAAHTPYFEQPQKFLSLVNDF 263 >gi|12045185|ref|NP_072996.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length=268 Score = 77.0 bits (188), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 123/271 (45%), Gaps = 45/271 (17%) Query 39 ERGKIF-FLHAFTGNITNKLSFRTHF-----KDYSFYGINFPGHGNSVIHNQSELDFNFW 92 +R +F FLH F SF F K + F+ NFPGHG++ + +L N + Sbjct 20 KRKNVFIFLHGFGSEYA---SFSRIFSLFKKKKWPFFTFNFPGHGDNESTDTDQLKLNHF 76 Query 93 IKLVQQFFNKYQLKNVVLFGHSIGGGLAIALTQVLTKEQIKGIILEAPLNPGIRATPPSI 152 + LV F + +L NV+L GHS+GG +A+ + +V+ +IK +IL AP+N Sbjct 77 VDLVCDFIVQKKLNNVILIGHSMGGAVAVLVNKVIP-LKIKALILVAPMN---------- 125 Query 153 ISALVPDTNEDFEAVQRALIYNIEQRFGANFKDFCAKQKQK---------MIQKYAPLKV 203 F ++ ++ +R +N KDF ++++ +K K Sbjct 126 --------QTSFSVNKKRILDTFFKRNNSNHKDFVEHEEKRKSLLKIAINAFKKRTTFKT 177 Query 204 MLQP--EQAEQRLQLIDAAFKRL-SYPTLWIHGQEDGIVRYLPSKAYLESLHNPLIELV- 259 + + A+ ++ A++ + + PTL I G D + P+KA ++ L N +++ Sbjct 178 LYSDMVQNAKYGNDSLERAYEMIGNKPTLVILGANDIVT---PTKASVDYLANKSDKIIF 234 Query 260 -GLSNTAHTTFFEQPQQFLQLVEQFLNKLNK 289 + H+ P+ F V +FL+ L K Sbjct 235 KVIDGVGHSPHDSAPKLFFDYVLEFLDNLKK 265 Lambda K H a alpha 0.324 0.141 0.424 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31108731 Query= gi|13508185|ref|NP_110134.1| ribosomal protein S4 [Mycoplasma pneumoniae M129] Length=205 Score E Sequences producing significant alignments: (Bits) Value gi|12045167|ref|NP_072978.1| ribosomal protein S4 [Mycoplasma gen... 379 7e-138 >gi|12045167|ref|NP_072978.1| ribosomal protein S4 [Mycoplasma genitalium G-37] Length=205 Score = 379 bits (972), Expect = 7e-138, Method: Compositional matrix adjust. Identities = 180/205 (88%), Positives = 193/205 (94%), Gaps = 0/205 (0%) Query 1 MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRKTIPGQHGNRFRSSTMSGYAQQLQEKQRM 60 MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRK+IPGQHGNRFRSST+SGYAQQLQEKQRM Sbjct 1 MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRKSIPGQHGNRFRSSTLSGYAQQLQEKQRM 60 Query 61 QYMYGITDKQFRRLFRLVLKQRGNLAVNLFRVLESRLDNIVYRMGFAPTRRSARQLVNHG 120 QYMYGITDKQFRRLFR VLKQ+GNL VNLFRVLESRLDNIVYRMGFAPTR+SARQ+VNHG Sbjct 61 QYMYGITDKQFRRLFRFVLKQKGNLTVNLFRVLESRLDNIVYRMGFAPTRKSARQMVNHG 120 Query 121 HVLLNDRTVDTPSIILNPGDKVRLKAKTIKIPIVKAASESGVVSPFVETNNKTFEGTYVR 180 HV+LND+TVDTPSII+NPGDKVRLKA+ K P+VK E+ V+S FVETN K FEGTY+R Sbjct 121 HVILNDQTVDTPSIIINPGDKVRLKARITKSPLVKNFIENSVISSFVETNKKAFEGTYIR 180 Query 181 FPERSELPAGINESYVVEWYKRLVK 205 FPERSELPAGINESYVVEWYKRLVK Sbjct 181 FPERSELPAGINESYVVEWYKRLVK 205 Lambda K H a alpha 0.320 0.136 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20013915 Query= gi|13508186|ref|NP_110135.1| cytadherence accessory protein HMW1 [Mycoplasma pneumoniae M129] Length=1018 Score E Sequences producing significant alignments: (Bits) Value gi|12045168|ref|NP_072979.1| cytadherence accessory protein (hmw1... 338 3e-101 >gi|12045168|ref|NP_072979.1| cytadherence accessory protein (hmw1) [Mycoplasma genitalium G-37] Length=1139 Score = 338 bits (867), Expect = 3e-101, Method: Compositional matrix adjust. Identities = 152/296 (51%), Positives = 230/296 (78%), Gaps = 1/296 (0%) Query 724 NLFANSDINSIIAELKQGRSNPAINFDDIFKMSSYQMVVKKSFVQISDFITNSKTDITNR 783 N SD+ II+ELK+G NP INFD IF+M+ YQM VK+SF+ ++DF+TN K I+ R Sbjct 844 NFNKKSDLYKIISELKRGELNPTINFDAIFQMNDYQMSVKQSFIHLNDFVTNYKNQISER 903 Query 784 FLLIKKELQAELTRLIEENEQLKAEFLNAKDLSVYQKDELLRSLSNDFTIAHRPSDSYEQ 843 +L+IKKELQ+EL+RLI++NE L +F NAK+L+ QK+E++RSL++DF IA++PS+SYEQ Sbjct 904 YLIIKKELQSELSRLIDQNENLNVQFNNAKNLTTLQKEEMIRSLASDFAIAYKPSNSYEQ 963 Query 844 LQKSGELVRNIQKAILENESKIKNIQITLKELKAVYKLCSDTVLNGMAKLDSVLRFNKKE 903 LQKSGE++R++Q+AI ENE KI++IQ +LK+LK VY C +T++N + KLD+ LRF KKE Sbjct 964 LQKSGEIMRHVQRAITENEKKIESIQGSLKQLKTVYNSCCETIMNNINKLDNTLRFAKKE 1023 Query 904 KDPLLLNSMETLSSFE-TEPQAIIEDLLDFSSSFDKMSNEQLDEFVYQNLDSGLNLDLDG 962 KDPLLL++ ++++ EP +++DL+DFS++FD +SNEQLD+F+Y+N+D ++ + +G Sbjct 1024 KDPLLLSNFDSVTDNGLVEPNQLMDDLIDFSNTFDNISNEQLDDFIYENMDRNIDFEFEG 1083 Query 963 FDHQLSSMNIHGLEPLDPMKLDDFDFETLTPDKTSNLSSILDDELMENGGDFNLDY 1018 F++ ++ ++ + ++D D ETL PD+TSN SS+LD++L E+ GDF+LDY Sbjct 1084 FNNDFVDIDAKVMDSMSAFSVNDLDIETLVPDRTSNFSSLLDEDLFESSGDFSLDY 1139 Score = 209 bits (532), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 103/184 (56%), Positives = 131/184 (71%), Gaps = 20/184 (11%) Query 1 MKKSKEAVFEDKDYTEENPEQIFGNLYDGKLTVQ-DGKVKIAYDGDGNGYYIAFNSETGV 59 M K+K++VFE+K+YT+ PE IFG+LYDGK TV+ D +K+AYD DGNGYYIAFN ETGV Sbjct 1 MAKNKQSVFEEKNYTQTEPENIFGDLYDGKSTVEEDPNIKVAYDADGNGYYIAFNKETGV 60 Query 60 YYDPYGDTEYDISVLFDANGNSFVFADAPTVEVLAGEQEQTEAEPDYLQYVGNEAYGYYD 119 YYDPYGDTEYDIS LFD NGN FVF ++ + E DYL+YVGN YG YD Sbjct 61 YYDPYGDTEYDISQLFDENGNPFVF-------------DEKQEENDYLKYVGNPDYGSYD 107 Query 120 EAGEWVWSGYFEGDQWISTLPQTEAEEKQFGFEDNIE---TTPTASED-FGLEADVPAPE 175 E GEWVWSGYFE DQWIST +++ ++ +GF+ ++ P + ED +G + D+P PE Sbjct 108 ENGEWVWSGYFENDQWIST-KESQPTDENYGFDSDLPPEVKQPESVEDNYGFDNDLP-PE 165 Query 176 VAEP 179 V +P Sbjct 166 VKQP 169 Lambda K H a alpha 0.308 0.128 0.354 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 128702042 Query= gi|13508187|ref|NP_110136.1| hypothetical protein MPN448 [Mycoplasma pneumoniae M129] Length=285 Score E Sequences producing significant alignments: (Bits) Value gi|12045169|ref|NP_072980.1| hypothetical protein MG313 [Mycoplas... 317 1e-110 >gi|12045169|ref|NP_072980.1| hypothetical protein MG313 [Mycoplasma genitalium G-37] Length=287 Score = 317 bits (811), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 167/287 (58%), Positives = 238/287 (83%), Gaps = 2/287 (1%) Query 1 MFPYYPLKVTRNLQLLVWAAVLMALSFIFNIFSINVTSVLKVSFTRIPFALIGWMFGPVW 60 MFPYYPL++ ++LQLLVWA+VL+AL+FIF+IFSI+VT+VL +SF RIPFAL GW+FGP+W Sbjct 1 MFPYYPLRLLKSLQLLVWASVLLALTFIFSIFSISVTNVLSISFLRIPFALFGWIFGPIW 60 Query 61 GFTFGAIADTMDWLTRGYTWFWLFAIQKPMFCFLAGLVKGVYQVRQSSTNWKIDFWILQS 120 GF FG ++DT+DWLT+GY WFW+FA+QKP+F FLAG+VKG+Y VR++++N+K+DFW+LQ+ Sbjct 61 GFIFGFLSDTIDWLTKGYVWFWMFALQKPLFAFLAGIVKGIYLVRKNASNYKVDFWVLQT 120 Query 121 ILIGFFVLTLVLLLMYLTDGNFQAAGNQSFGRG-FDVNVHILQGITMAAFISFFVGLEIF 179 +L+ FFV+++ LLL+YLT+ FQ G ++F VNV +LQ IT+ +F+ FF+ E F Sbjct 121 LLVTFFVVSVTLLLLYLTNNEFQQIGTKNFQTADLSVNVVVLQIITLVSFVIFFLVTEGF 180 Query 180 LGWKYTKVKKPKEMILNLYILMMALLMTLVVSLLIGTVASIEYLVFL-SGKPSKNFVKYG 238 LG+ Y K + ++ +L +Y L++ +LM++VVS+L+GT+A+IE++ F+ +G+PS NFV YG Sbjct 181 LGFVYVKKRNKEQALLTIYSLVLMVLMSVVVSILLGTIAAIEFITFINNGRPSNNFVLYG 240 Query 239 SYFFLMPRVLVQALLMPLYLALFKPLIRIAENNLRNYLRVYNLSWKR 285 YFFL+PRVLVQALL+P+Y+ALF PLI I ENNL+NYL ++ LSWK Sbjct 241 VYFFLLPRVLVQALLLPIYVALFYPLIGIVENNLKNYLLLFTLSWKS 287 Lambda K H a alpha 0.333 0.145 0.465 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30787128 Query= gi|13508188|ref|NP_110137.1| hypothetical protein MPN449 [Mycoplasma pneumoniae M129] Length=448 Score E Sequences producing significant alignments: (Bits) Value gi|12045170|ref|NP_072981.1| hypothetical protein MG314 [Mycoplas... 415 9e-145 >gi|12045170|ref|NP_072981.1| hypothetical protein MG314 [Mycoplasma genitalium G-37] Length=443 Score = 415 bits (1067), Expect = 9e-145, Method: Compositional matrix adjust. Identities = 231/450 (51%), Positives = 309/450 (69%), Gaps = 9/450 (2%) Query 1 MTFSDLLTKLQDNLDIVFNANALKERIQSDPAFAKTIREQLKLLYFLEQKQAKAKTKKKD 60 MTFS++LTK+Q+NLDIVFN L+ RI++D FAKTI QLKLLYFLE+KQ + KTKK D Sbjct 1 MTFSEILTKVQNNLDIVFNNETLRTRIKTDSDFAKTILAQLKLLYFLEEKQKRVKTKKPD 60 Query 61 FQPVFQNLEARFVSLGQTKLANTELNL-KLDLTDATDLANYLPIAVCNLFNRDLNSFSKL 119 +F + +F+ LGQ +L+ EL K DLTDA DLANYL +AV NLFN++LNSF+KL Sbjct 61 -HFLFGSFHDKFIQLGQNQLSEKELKAAKFDLTDALDLANYLNVAVKNLFNKELNSFTKL 119 Query 120 SSVQPTAVEKTTNGANKPTVTIDLNQPRIHTTGTVSPELEN-FVNESLEARARQRAFMRV 178 + Q V + N TV + + I+ + ++ LEN + ++L+ RAR RAF R Sbjct 120 AETQVKPVSELQ--ENNKTVKDNPSFQTINNSQQLNSGLENNILQQTLQVRARDRAFGRF 177 Query 179 TSERMVGKIFEFQFKSQWIKWAQLAIFISMLLIGAAAIAYLVVVNLLFYRYVNPDSNLTK 238 TSE++VGKIFEFQFKSQWIKWAQLAIFISM+ I +IAY+V+VN+ F +V+ +S L Sbjct 178 TSEKLVGKIFEFQFKSQWIKWAQLAIFISMIAIFFISIAYVVMVNVFFTHFVDKNSPLFN 237 Query 239 AVTGQNNTDRPALVDLNGGINLFFPVSASTLITLIFLGFGSTSFLLAFQGKPYSFATRSQ 298 QN + N +N FF +S+S LIT+IFL FG SF AFQGKPYSFATR Q Sbjct 238 VNNDQNTVQQSNADTTN--LNRFFALSSSNLITMIFLAFGGASFFFAFQGKPYSFATRGQ 295 Query 299 TFKAMHFLKHQFGVTDFPRINDNYRYKVRIKWIFWTIFLFVALNALPGGNIITGGILNPS 358 T +AM +L+ +FGV +FP+INDNYRYKVRIKWIFWTIF+FV LN +P GNI+ G N + Sbjct 296 TNRAMRYLRSEFGVKEFPKINDNYRYKVRIKWIFWTIFIFVFLNCIP-GNIVRSGFWNAA 354 Query 359 FLLNALRSNELKINSETFKTIFVGFSIFYLASIIPFALISIIAFVLSPKPSSDQTNEVLN 418 ++ N+L S F + +G + ++ SI+PF++IS+IAF LSPK + +QTNE+ N Sbjct 355 LIIRLFSENQLISVSPLFASYLIGIAWLFVFSIVPFSIISVIAFSLSPKLNLEQTNEIFN 414 Query 419 RYVQEEMQQPFKTDCDPNNDNDLTPPAVFG 448 +Y QEE+ +P +D + D+ PP +FG Sbjct 415 KYFQEELAKPITSD-ESKTTLDIPPPTIFG 443 Lambda K H a alpha 0.322 0.137 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 52723875 Query= gi|13508189|ref|NP_110138.1| hypothetical protein MPN450 [Mycoplasma pneumoniae M129] Length=314 Score E Sequences producing significant alignments: (Bits) Value gi|12045171|ref|NP_072982.1| hypothetical protein MG315 [Mycoplas... 273 7e-93 >gi|12045171|ref|NP_072982.1| hypothetical protein MG315 [Mycoplasma genitalium G-37] Length=297 Score = 273 bits (697), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 140/297 (47%), Positives = 200/297 (67%), Gaps = 1/297 (0%) Query 16 MTVVYGADIGLIHQQLNQLLNPAACKQVWFQDVNKLYDVVLNQNLFAEDTKPILIHNCSF 75 MT++YG DIGLIHQ+L+Q+ + + K +WF+D+ +LYD+ +Q LF + + +++NCSF Sbjct 1 MTIIYGQDIGLIHQKLSQIKSNSPYKTIWFKDLKQLYDL-FSQPLFGSNNEKFIVNNCSF 59 Query 76 LEKNNLTKAELHCLKTLKDTDVVVTIYSDSPANALINDRAITKYACKPVTAKTIHQVISK 135 LEK +LT+ E CL+ LK TDVV+T+Y+D+P + + ++IT C + K++H+ I + Sbjct 60 LEKTSLTRQENLCLEKLKTTDVVLTVYTDNPFSGIKTIKSITTVFCDKLDWKSMHKAIGE 119 Query 136 AAKTLKLNLNPDLIDHLATILPFNLGVIEQELRKLTLLSPAELQDKKMLEAVLCDYQTSQ 195 + L L L+ ++ID LA LP N+GVI QE+ KL+LL E++D K++E V+CDYQ Q Sbjct 120 VCRELNLKLDLEIIDWLANALPLNMGVIYQEINKLSLLGKNEIKDNKLVETVICDYQPVQ 179 Query 196 ILQLTDAMVRLQTAKALKLIERLFLPKQLTPPQFLEFLANELLLALMVKGVKPQAVFQLQ 255 I +LT A+ Q KA K I+ L K QFLEF + ELLLALMVK P+ + + Sbjct 180 IYKLTKALTNSQIVKAFKYIDELASTKPNFATQFLEFFSGELLLALMVKSCNPKQLTNIN 239 Query 256 WNVNPFRLKAIQSQYRFWSTNQLTALINAIWQLDIKIKRNDGLAIHLLKHFVLRFFA 312 NVN FRL AIQSQY +++ L +INAI +LDIK+K NDG AI LLK+F L FF Sbjct 240 LNVNQFRLIAIQSQYHNFTSKVLVNIINAIQKLDIKLKHNDGFAIPLLKNFALSFFT 296 Lambda K H a alpha 0.324 0.137 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 34659956 Query= gi|13508190|ref|NP_110139.1| competence locus operon protein 3 homolog; similar to Swiss-Prot Accession Number P39695, from B. subtilis [Mycoplasma pneumoniae M129] Length=369 Score E Sequences producing significant alignments: (Bits) Value gi|12045172|ref|NP_072983.1| hypothetical protein MG316 [Mycoplas... 435 7e-155 >gi|12045172|ref|NP_072983.1| hypothetical protein MG316 [Mycoplasma genitalium G-37] Length=369 Score = 435 bits (1119), Expect = 7e-155, Method: Compositional matrix adjust. Identities = 222/365 (61%), Positives = 291/365 (80%), Gaps = 0/365 (0%) Query 1 MKWKLFYFFTLLTFTPAYFFIEQNQWVILASFLVIVNLISLTVHWKFGLLLISCSAALLA 60 M+ KLFYFF LL+F P +F ++Q Q+V L+ +++++ L SL WKF LL ++ +A Sbjct 1 MQTKLFYFFVLLSFIPGFFLVQQEQFVALSIWIILITLFSLWYDWKFCLLNLTIVGFFIA 60 Query 61 YCQLMPEFQLAKLMKANWLRTPFISWLDQHTSGVFNQYLKLFLINETTKNTLYQSAIQLN 120 +C +P ++ +++K N++RTPFI+W+DQ T G NQYLKLFLINETTKN LYQ+A++LN Sbjct 61 FCYFVPAVKINQIVKNNFIRTPFINWIDQTTKGELNQYLKLFLINETTKNNLYQNALKLN 120 Query 121 IVHLFVISGFHLSFLFGVMERWLYKRFYINKITGFVMLLLYLFLVGFAFSALRVFVSKLL 180 IVHLFVISGFHLSFLF +MER+L+KR+Y+NK++GF +LL+YLFLVGFAFSALRVF+S LL Sbjct 121 IVHLFVISGFHLSFLFNLMERFLWKRWYLNKLSGFAVLLIYLFLVGFAFSALRVFISTLL 180 Query 181 RQMFPKQLPENNLGLTALLIILMSPGALHNFGFNFSFLACFVLFAINKVKLWKPLQAVLT 240 +Q+F KQLPE+NL LTALLIIL+S AL+NFGFNFSFLACFVL +NK+KL K L+ +++ Sbjct 181 KQVFKKQLPEDNLSLTALLIILISNHALNNFGFNFSFLACFVLLFVNKLKLLKALKPLVS 240 Query 241 STLILIVVSPITLHLNRKLNALSVFHNLLFTPIALFYFCASWLLLPLIPWMGNSLVGFYW 300 S+LILIV+SP++L+LN +LNA SV NLLF+PIALFYFC SW++LP I G + G Y Sbjct 241 SSLILIVISPLSLYLNSRLNAFSVLFNLLFSPIALFYFCVSWIILPFIGVFGQASFGIYL 300 Query 301 PLPWLSQWALNTTVFLNLPKPNWVFYLVYYGLWGLLYTVGTVFYYDRSLWCRYWVNSPAV 360 PL LS+W+L TVFL +PKPN +F+ VYYGL GLLYT+ TV YYD +LW RYW NSP + Sbjct 301 PLKMLSEWSLKVTVFLQIPKPNLIFFFVYYGLLGLLYTIFTVAYYDNNLWSRYWANSPKI 360 Query 361 KPTAQ 365 K + Sbjct 361 KSNQK 365 Lambda K H a alpha 0.333 0.144 0.484 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 41901057 Query= gi|13508191|ref|NP_110140.1| cytadherence accessory protein HMW3 [Mycoplasma pneumoniae M129] Length=672 Score E Sequences producing significant alignments: (Bits) Value gi|12045173|ref|NP_072984.1| cytadherence accessory protein (hmw3... 210 2e-61 >gi|12045173|ref|NP_072984.1| cytadherence accessory protein (hmw3) [Mycoplasma genitalium G-37] Length=599 Score = 210 bits (535), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 101/169 (60%), Positives = 125/169 (74%), Gaps = 7/169 (4%) Query 1 MTDKERAKLAKAYGKLAQKIQKSYPDINVVYGRDAKNKLHALYQDPETGNIFSLEKRKQL 60 M DK++AK+ KAY KL +KI K YPD++VVY RD KNK+HALYQDPE+GNIFSLEKRKQL Sbjct 1 MNDKQKAKINKAYNKLLKKINKRYPDVSVVYARDHKNKVHALYQDPESGNIFSLEKRKQL 60 Query 61 PADYPLFELDSDEPISFAPKIIPLTAFDGNNNEVIVQYDQVNNTFYDQDGNVLDVSGYRD 120 ++YPLFEL SD PISF I+ L A+D NN V VQYDQ NNTFYDQ+GNVLDVS Y D Sbjct 61 ASNYPLFELTSDNPISFTNNIVSLNAYDDKNNLVTVQYDQDNNTFYDQNGNVLDVSSYTD 120 Query 121 GENIPLVDYLNYGGSTASADTTTSEPLSGEGYPDIDAGLPVVDPDATPE 169 + +PL++YL S+ T+ E + + YP IDAGLP ++ D P+ Sbjct 121 EKKVPLINYL-------SSTQTSQEQPTQQDYPSIDAGLPKIEVDDQPK 162 Score = 94.4 bits (233), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 119/383 (31%), Positives = 189/383 (49%), Gaps = 55/383 (14%) Query 322 PVVEAP-KVVEP--TPTPVVEATPAPK-VEPKVVEQPQPTPVTVEVDSPKVEIPKVVTAK 377 P+V P K+V+P P VE P P+ VEPK+ +P+ V+ PK E+ VV + Sbjct 240 PLVNKPAKLVQPEVKHIPQVEVQPKPQIVEPKIEPKPEVKHVSHVEIQPKPEVKPVVDS- 298 Query 378 VALQVAQPTPVPAVPKVAPQPTPAPVVVQPTAVVQPVVKAEPKVVTPTPAPQVVVTPQVA 437 +V QP V VP V QP P V ++P + +P ++++P+V+ P +V Q+ Sbjct 299 -VPEVKQPE-VKHVPHVEVQPKPV-VDLKPQRI-EPRIESKPEVIKHIPQVEVQPKAQMV 354 Query 438 TPKVTPK-------VVQTTPAVPPVVVQPEVVVQPIIRPTQPEP------EWKPSPASVV 484 P++ PK V++TP V +PEV + +P QP P + P A+++ Sbjct 355 EPRIEPKPETKYIPQVESTPQVEVHHWKPEVKTE--YQPQQPLPTSGLQIKVVPRSAALL 412 Query 485 EP------QPCQSACVNNESGAITIHTTNRSLLLEKLASLGH---LHD---ASTRTPLPH 532 + QP Q + IT+ ++ + LLEK+ +L H + D S T Sbjct 413 QSKLDTGFQPRQVERTTD--SDITVSVSSHASLLEKINALNHQRIMSDIALKSDNTIKSS 470 Query 533 ERYQLAPPSEYVATKYNEPLFNLPAIRNSWARFTRPTVESTPIASRFTGVTPM-AVNYRN 591 + P +EYVATKY++PL++ + RF+ + TP SR TP+ + N++N Sbjct 471 NFSRFYPENEYVATKYSDPLYSDTNQSLTSDRFSL-DFDYTP-KSRVNNYTPLRSTNFQN 528 Query 592 PASLNFDSLNSFGAYRSPSSFYPL-RRPLELSSLRRNRSSFFNTHRF-DLGSNYTSFTPR 649 A ++++ R+PSS+YPL RRP L+++ RSSF + R F+ Sbjct 529 NA------ISNYRFSRTPSSYYPLTRRPWRLTNISSYRSSFHSPTRLSSFRRTSLPFSSS 582 Query 650 YRSPLRGGLSQRFPLRSSWSKEF 672 Y GL +R+P RS WSK+F Sbjct 583 Y-----DGL-RRYPSRSYWSKDF 599 Lambda K H a alpha 0.312 0.130 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 82930420 Query= gi|13508192|ref|NP_110141.1| 30K adhesin-related protein [Mycoplasma pneumoniae M129] Length=274 Score E Sequences producing significant alignments: (Bits) Value gi|12045174|ref|NP_072985.1| adhesin P32 [Mycoplasma genitalium G... 160 7e-50 >gi|12045174|ref|NP_072985.1| adhesin P32 [Mycoplasma genitalium G-37] Length=280 Score = 160 bits (406), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 126/288 (44%), Positives = 151/288 (52%), Gaps = 43/288 (15%) Query 7 RKLKLFLLAWMLVLFSALIVLATLILVQHNNTELTEVKSELSPLNVVLHAEED-TVQIQG 65 R KLF++ + +LF+ +++++ +L VK+ S L VV H ED T IQG Sbjct 8 RYKKLFIV--LALLFTTILIVSLSLL-----AFALVVKTNGSELGVVFHQTEDNTTVIQG 60 Query 66 KPITEQAWFIPTVAGCFGFSALAIILGLAIGLPIVKRKEKRLLEEKERQEQLAEQLQRIS 125 + I EQ WFIPTVAG FGFSALAIILGLAIGLPIVKRKEKRLLEEKERQEQ+AEQLQRIS Sbjct 61 RSIVEQPWFIPTVAGSFGFSALAIILGLAIGLPIVKRKEKRLLEEKERQEQIAEQLQRIS 120 Query 126 AQQEEQQALEQQAAAEAHAEAE---------------------VEPAPQPVPVPPQPQVQ 164 QQ EQQ +E ++ P Q P QP Q Sbjct 121 DQQ-EQQTVEIDPQQSQAQPSQPQVQQPLQPQFQQRVPLLRPAFNPNMQQRPGFNQPNQQ 179 Query 165 INFGPRTGFPPQ--PGMAPRPGMPPHPGMAPRPGFPPQPGMAPRPGMPPHPGMAP---RP 219 F P F P+ P M RPG +P M RPGF QP +P +P M P RP Sbjct 180 --FQPHNNFNPRMNPNMQ-RPGF--NPNMQQRPGF-NQPNQQFQPHNNFNPRMNPNMQRP 233 Query 220 GFP-PQPGMAPRPGMPPHPGMAPRPGFPPQPGMAPRPGMQPPRPGMPP 266 GF P P +P +P M RPGF P P P P+ G+ P Sbjct 234 GFNQPHPNQFAQPN-NFNPNMQQRPGFNPNMQQRPNPSQLMPKGGLKP 280 Lambda K H a alpha 0.318 0.139 0.440 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29219265 Query= gi|13508193|ref|NP_110142.1| hypothetical protein MPN454 [Mycoplasma pneumoniae M129] Length=193 Score E Sequences producing significant alignments: (Bits) Value gi|12045175|ref|NP_072986.1| hypothetical protein MG319 [Mycoplas... 186 2e-62 >gi|12045175|ref|NP_072986.1| hypothetical protein MG319 [Mycoplasma genitalium G-37] Length=178 Score = 186 bits (472), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 97/176 (55%), Positives = 126/176 (72%), Gaps = 16/176 (9%) Query 18 VAIAYLFLAIFYFGTVSPSFKLAQPMDVFNRFFSKEALDTVTTSGVGATVTAPKAAAASQ 77 V AYLFLAIFYFG+++P F+LAQPMDVFNRFFSKEALD ++++ GAT TA Q Sbjct 18 VGFAYLFLAIFYFGSLNP-FELAQPMDVFNRFFSKEALDNISSNN-GATATA-------Q 68 Query 78 SHALILAAEQVANNANKLDPRFPIDGSLFSQIPGYVDFLKKPNIPAFLEKVGPYLTKYII 137 + +L+ E ++N LD RFP + S F IPGYVDFLK +P F+E+ PYLTKY+I Sbjct 69 TSSLLQLLE---GSSNGLDNRFPTEKSAFYAIPGYVDFLKNAKLPGFVEQFTPYLTKYVI 125 Query 138 PLGMALVSGLIGALIINFILSKITRAIIKKRRKAKRAQQSRVDDYYYDEAPRRRRR 193 PLGMA VSGLIG LI+NF L+KITR+I +++R K+ +Q YYD++ RR+R Sbjct 126 PLGMAFVSGLIGTLIVNFFLNKITRSIKRRKRNMKKQEQEE----YYDDSRSRRKR 177 Lambda K H a alpha 0.326 0.140 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 18286095 Query= gi|13508194|ref|NP_110143.1| hypothetical protein MPN455 [Mycoplasma pneumoniae M129] Length=287 Score E Sequences producing significant alignments: (Bits) Value gi|12045176|ref|NP_072987.1| hypothetical protein MG320 [Mycoplas... 383 7e-137 >gi|12045176|ref|NP_072987.1| hypothetical protein MG320 [Mycoplasma genitalium G-37] Length=286 Score = 383 bits (983), Expect = 7e-137, Method: Compositional matrix adjust. Identities = 201/288 (70%), Positives = 236/288 (82%), Gaps = 6/288 (2%) Query 1 MINQAN---NQVNFSEQQFVHHKRFSVIRLTFSVAAIGILFIFLIGFGVQQLLTNTTSLG 57 MIN +Q + +QFV K+ SVIRLTF VAA GI FIFL+ VQQLL+ +T L Sbjct 1 MINSTKGYIDQNGLAAKQFVQTKQLSVIRLTFMVAAFGIFFIFLVALTVQQLLSRST-LI 59 Query 58 TLASDIRTLGTIAFVASLVSLILYFVTAFKLRNRNTTLAWFWGLIIADVISYGITLGVLL 117 LASD RTL TIA + S VSLILYFVTAFKLRN NT+L WFW LII DVISYGITLG+LL Sbjct 60 DLASDFRTLSTIAVITSFVSLILYFVTAFKLRNPNTSLTWFWALIITDVISYGITLGILL 119 Query 118 TLATTQLRELIDFKFSDIVFAFLGAALVYGTVWGLSALPSQQRRYQQTQTLFRIFIWAFF 177 TLATT ++ ++F+ +DIV+AFLGA+LV+G+VWGLSALPSQ+RRYQQTQTLF I +WAF Sbjct 120 TLATTFSKQ-VNFEANDIVYAFLGASLVFGSVWGLSALPSQKRRYQQTQTLFHILLWAFV 178 Query 178 ISIIASLLTFVLNFTVFRGGRTNILDLLFPGLSLIVGGIFSLLSVYFVCLQIRNEQDLVK 237 ISI+ASLL+F+LNFTVF TN+LD + PGLSLIVGGIFSL+SVYFV LQIRNEQDL+K Sbjct 179 ISIVASLLSFILNFTVF-ASTTNLLDRIIPGLSLIVGGIFSLISVYFVSLQIRNEQDLIK 237 Query 238 LYESQDPALAKAQMWRSALFFGAWLVSSFMNLVYFILRIILLTRNLSR 285 YES+D +A+ Q WRSALFFGAWL+SSFMNLVYFILRIIL+T+N SR Sbjct 238 YYESEDYEMARRQSWRSALFFGAWLISSFMNLVYFILRIILITKNFSR 285 Lambda K H a alpha 0.333 0.144 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31072194 Query= gi|13508195|ref|NP_110144.1| hypothetical protein MPN456 [Mycoplasma pneumoniae M129] Length=1005 Score E Sequences producing significant alignments: (Bits) Value gi|12045178|ref|NP_072989.1| lipoprotein, putative [Mycoplasma ge... 1263 0.0 >gi|12045178|ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=934 Score = 1263 bits (3268), Expect = 0.0, Method: Compositional matrix adjust. Identities = 657/1009 (65%), Positives = 769/1009 (76%), Gaps = 81/1009 (8%) Query 1 MKFQRKYWGLLSTLGVSSAVALSACAAQA--RDVYVTSSASDLLKNNSVPMSMFNVSPTS 58 MK +++Y L STL VS+A+ LSACA+ + V+ TSS++DLLKNNSVP+SMFNVSPTS Sbjct 1 MKLKKRYLLLGSTLTVSAALILSACASSQLNKGVFFTSSSADLLKNNSVPLSMFNVSPTS 60 Query 59 SFFGSKYAGLTTYIATGSNKDDGVNVATQTQEKLVLELATSVKGYKKKDKATSSQKTSTN 118 SFFG+ YAGLT Y+ATG+N+DDGVNV Q +EKLVLELA SV GYKK + + N Sbjct 61 SFFGNAYAGLTNYVATGTNRDDGVNVTDQIKEKLVLELALSVTGYKKTTHSGLKGRAQKN 120 Query 119 SSCTTTSSGTST--SGEDDWECIGEIKRQSSSNGQNNQQSKSITEEEKFQEISQKATRYE 176 S ++ + + ++W+ IG I R SS KSITE+ + +I+Q+ATRYE Sbjct 121 GSTDSSDGSSKNDYTKFNEWDAIGTIYRDSS---------KSITEDPNYHKITQEATRYE 171 Query 177 FAIDTGIKWVDNNGKPVKDASGNDVKLSSKDFERGFEAYILSSELRFNRNGYFIDLMGLD 236 F I+T + WVDN G+ VK + VKLSSKDFERGFE YILSS L FNRNGYFIDLMGLD Sbjct 172 FTINTSLSWVDNAGREVKQ-NNQPVKLSSKDFERGFETYILSSNLGFNRNGYFIDLMGLD 230 Query 237 VKKTVGMTKKNGAQVQMKVASSDEKDGEEKTVKITDDAYNPEDYQSTDDSKFNVYLTSPF 296 V+KTVGM K NG+ DG K ++ITD+ Y+ E+Y+S DD+KFNVYLTSPF Sbjct 231 VEKTVGMDKTNGSS-----------DGNGKGIEITDENYDVENYRSVDDNKFNVYLTSPF 279 Query 297 PFLLSMMSKEFFFPIPHTHPKVKAIKVGKDSPLVYNEKNGSKILDQTKTNFDGIYGGGVN 356 PF LSMMSKEFFFPIPHTHPKVKA+K+GKDSPL YN+ N KILDQ TNFDGIYGGGVN Sbjct 280 PFFLSMMSKEFFFPIPHTHPKVKALKLGKDSPLKYNQNNNRKILDQANTNFDGIYGGGVN 339 Query 357 AWRDTWSVGPYYVESFNQSQIVFKRNSEYDTHITPNLPKTREDNEKPIPTMINYFQPGAT 416 AW+DTWSVGPYYVESFNQ+QIVFKRN YD ITPNLPKTR++NEKPIP +++YFQPGAT Sbjct 340 AWKDTWSVGPYYVESFNQAQIVFKRNQIYDAIITPNLPKTRQENEKPIPAIVSYFQPGAT 399 Query 417 PEVFYSNYIAGGLSSAEVPYSQQEDARSRFAGTGDLRWVKVQKTAQSAQITYSSRPYVVE 476 PEVFYS+YIAGGLS++ VPYSQQ+DARSRF GTGDLRW+K+QKTAQSAQ+TYS +PYV Sbjct 400 PEVFYSSYIAGGLSASAVPYSQQQDARSRFNGTGDLRWLKIQKTAQSAQVTYSGKPYVAN 459 Query 477 GETVKTNSNITETEAKFLYNSESEEALTIRAGINGLINWQNLAIILLPNSGDLNYSIVPF 536 TV+ N+NITETEAKFLYNSESEEALTIRAGINGLINW+NLAII LPNSGD+NYS VPF Sbjct 460 DSTVQLNANITETEAKFLYNSESEEALTIRAGINGLINWKNLAIIDLPNSGDVNYSTVPF 519 Query 537 GIFKEKGKNGASVQQKAVSTTEGSDLMNDYYYKIEKEQRLGLIPQREGNYEKNKNVLESA 596 GIFKEK NG S S T + NDYYYKI QRLGLIP++ G ++K+KNVL++A Sbjct 520 GIFKEKPANGTS------SGTNTDGIENDYYYKINNNQRLGLIPEQTGTFQKDKNVLDTA 573 Query 597 TVKINYYSSKATSGQAGAAASAAFAKNNNTSDNTQQNQTSSVEAKSVNVTKHSFVQALKK 656 TVK++YYSS T+G A+ S + +QTS V +K V+VTK SF+ ALKK Sbjct 574 TVKLSYYSSTKTNG----------AQVRTASTSGSSSQTSQVSSKQVSVTKQSFISALKK 623 Query 657 VGFSGSNPLHFNMKLGNSSLSANGVDYYNAVKQALTELGTADNGEKLIVPEIILGDAQGP 716 VGF+G+NPLHFN+KLGN+SLS+N VDYYNA+KQALTELG DNGE LI+PEIILGDAQGP Sbjct 624 VGFTGNNPLHFNIKLGNASLSSNQVDYYNALKQALTELGN-DNGENLIIPEIILGDAQGP 682 Query 717 TRNEWYIGLSSVLGFSSWSPDYDGVGTWLDAATQLNDQGGGDVITYSSGAHIVRTLLLAA 776 TRNEWYIGLSSVLGFS WSPDYDGVGTWLDAATQLN +G G+VITY+SG+HIVRTLLLAA Sbjct 683 TRNEWYIGLSSVLGFSYWSPDYDGVGTWLDAATQLNSEGIGEVITYNSGSHIVRTLLLAA 742 Query 777 SQKDVHSKFTQKIDQQNTASTTSDVTVKKADSSQDSSKSNTEEEKW-DDVTSADLFKDDP 835 SQ +V ++ K+ Q NT + D W +TSADLFKDDP Sbjct 743 SQNNVFNQIENKL-QNNTTTNGKD---------------------WCSCITSADLFKDDP 780 Query 836 YVLKNFGDAKAQAAQRSTGSTTSGNGTQASLEFTKKALSLLKFLVDNGILDKEKVKEAIK 895 YV+KNFG T NGT ASL FTKKALSLLKFLVDN +L +KVKEAIK Sbjct 781 YVIKNFG-------------TNGNNGTSASLAFTKKALSLLKFLVDNKVLKADKVKEAIK 827 Query 896 DPNKYLGKRDKIENGTNKPSKNEDF-IGYELKDIYKKAAQLNRFNSIWAEKDTDNAKFLI 954 DP+KYL KR KI++ NKP+ D IGYELKD+Y AAQLNRFNSIWAE+DTDNAKFLI Sbjct 828 DPDKYLSKRSKIDD--NKPANVSDIHIGYELKDLYDNAAQLNRFNSIWAEQDTDNAKFLI 885 Query 955 TVVDSYFPVLPVPAAGLNETSPTLLKPWFQFRSAPSGNGTIRDYGFIPE 1003 TVVDSYFPVLPV A GLNET P+LLKPWF R+APSG T+RD G+I E Sbjct 886 TVVDSYFPVLPVSAPGLNETIPSLLKPWFSLRNAPSGIATMRDSGYIDE 934 Lambda K H a alpha 0.309 0.127 0.357 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126918325 Query= gi|13508196|ref|NP_110145.1| hypothetical protein MPN457 [Mycoplasma pneumoniae M129] Length=329 Score E Sequences producing significant alignments: (Bits) Value gi|12045178|ref|NP_072989.1| lipoprotein, putative [Mycoplasma ge... 392 2e-131 >gi|12045178|ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=934 Score = 392 bits (1006), Expect = 2e-131, Method: Compositional matrix adjust. Identities = 205/310 (66%), Positives = 230/310 (74%), Gaps = 40/310 (13%) Query 19 DNGEKLIVPEIILGDAQGPTRNEWYIGLSSVLGFSFWSPDYDGVGTWLDAATQLNEQGGG 78 DNGE LI+PEIILGDAQGPTRNEWYIGLSSVLGFS+WSPDYDGVGTWLDAATQLN +G G Sbjct 664 DNGENLIIPEIILGDAQGPTRNEWYIGLSSVLGFSYWSPDYDGVGTWLDAATQLNSEGIG 723 Query 79 DVITYSSGAHIVRTLLLAASQSNVHSTFTSKALGNDQTSSMTSSTTAVTVAKSGDGQQQT 138 +VITY+SG+HIVRTLLLAASQ+NV + +K N T+ Sbjct 724 EVITYNSGSHIVRTLLLAASQNNVFNQIENKLQNNTTTNG-------------------- 763 Query 139 GEQKEEDWKD-ISKADLFKDDPYVLKNFGDSTTQAKMQSGGSTNSNGNGSQASLAFTKKA 197 +DW I+ ADLFKDDPYV+KNFG TN N NG+ ASLAFTKKA Sbjct 764 -----KDWCSCITSADLFKDDPYVIKNFG-------------TNGN-NGTSASLAFTKKA 804 Query 198 LSLLKFLVDNKILKKDKVKEAIMNPDQYLSKRSKLDSNNQKPTKDDFIGSEFKDLYENAA 257 LSLLKFLVDNK+LK DKVKEAI +PD+YLSKRSK+D N D IG E KDLY+NAA Sbjct 805 LSLLKFLVDNKVLKADKVKEAIKDPDKYLSKRSKIDDNKPANVSDIHIGYELKDLYDNAA 864 Query 258 KLNRFNSIWAEKDTDNAKFLITVVDSYFPVLPVPAAGLNETSPTLLKPWFQFRSAPSGNG 317 +LNRFNSIWAE+DTDNAKFLITVVDSYFPVLPV A GLNET P+LLKPWF R+APSG Sbjct 865 QLNRFNSIWAEQDTDNAKFLITVVDSYFPVLPVSAPGLNETIPSLLKPWFSLRNAPSGIA 924 Query 318 TIRDYGFIPE 327 T+RD G+I E Sbjct 925 TMRDSGYIDE 934 Lambda K H a alpha 0.311 0.129 0.380 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36523770 Query= gi|13508197|ref|NP_110146.1| hypothetical protein MPN458 [Mycoplasma pneumoniae M129] Length=157 Score E Sequences producing significant alignments: (Bits) Value gi|12045178|ref|NP_072989.1| lipoprotein, putative [Mycoplasma ge... 125 6e-36 >gi|12045178|ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=934 Score = 125 bits (315), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 74/132 (56%), Positives = 95/132 (72%), Gaps = 17/132 (13%) Query 26 FKFEKEQRLGLIPQREGQYEKNKNVLTSATVKVNHYSSKQGQTQSASKAAVAVKANKA-- 83 +K QRLGLIP++ G ++K+KNVL +ATVK+++YSS K N A Sbjct 545 YKINNNQRLGLIPEQTGTFQKDKNVLDTATVKLSYYSS--------------TKTNGAQV 590 Query 84 -AGDSTTTSSQTPSVEAKKVEVTKQSFVQALRKVGFTGNNPLHFNMKLGNSSLSANGVDY 142 ++ +SSQT V +K+V VTKQSF+ AL+KVGFTGNNPLHFN+KLGN+SLS+N VDY Sbjct 591 RTASTSGSSSQTSQVSSKQVSVTKQSFISALKKVGFTGNNPLHFNIKLGNASLSSNQVDY 650 Query 143 YNAVKQALTELG 154 YNA+KQALTELG Sbjct 651 YNALKQALTELG 662 Lambda K H a alpha 0.311 0.123 0.348 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13480629 Query= gi|13508198|ref|NP_110147.1| hypothetical protein MPN459 [Mycoplasma pneumoniae M129] Length=591 Score E Sequences producing significant alignments: (Bits) Value gi|12045178|ref|NP_072989.1| lipoprotein, putative [Mycoplasma ge... 739 0.0 >gi|12045178|ref|NP_072989.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=934 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/576 (66%), Positives = 447/576 (78%), Gaps = 36/576 (6%) Query 23 MKFQRKYWGLLSTLGVSSAVALSACAAQA--RDVYVTSSASDLLKNNLVPMSMFNVSPTS 80 MK +++Y L STL VS+A+ LSACA+ + V+ TSS++DLLKNN VP+SMFNVSPTS Sbjct 1 MKLKKRYLLLGSTLTVSAALILSACASSQLNKGVFFTSSSADLLKNNSVPLSMFNVSPTS 60 Query 81 SFFGSKYAGLTTYIATGSNKDDGVNVTSQTQEKLVLELATSVKGYKKKTSTA---SNMKT 137 SFFG+ YAGLT Y+ATG+N+DDGVNVT Q +EKLVLELA SV GYKK T + K Sbjct 61 SFFGNAYAGLTNYVATGTNRDDGVNVTDQIKEKLVLELALSVTGYKKTTHSGLKGRAQKN 120 Query 138 ASVSSSSSSTGNNGSTEDEWEVVGSEIKRESGKGDNGKSITEDSNFQTISQQATRYEFTI 197 S SS S+ N+ + +EW+ +G+ I R D+ KSITED N+ I+Q+ATRYEFTI Sbjct 121 GSTDSSDGSSKNDYTKFNEWDAIGT-IYR-----DSSKSITEDPNYHKITQEATRYEFTI 174 Query 198 DTSIKWVDNNGKPVKDEKGQEVKLSSKDFERGFEAYILSSELRFNRNGYFIDLMGLDVEK 257 +TS+ WVDN G+ VK + Q VKLSSKDFERGFE YILSS L FNRNGYFIDLMGLDVEK Sbjct 175 NTSLSWVDNAGREVK-QNNQPVKLSSKDFERGFETYILSSNLGFNRNGYFIDLMGLDVEK 233 Query 258 TVGM--TNGKNGTQVKKMTTDSSSTQQSEEKKIEITDDNYDPEDYRSTSDDKFNVYLTSP 315 TVGM TNG + K IEITD+NYD E+YRS D+KFNVYLTSP Sbjct 234 TVGMDKTNG---------------SSDGNGKGIEITDENYDVENYRSVDDNKFNVYLTSP 278 Query 316 FPFLLSMMSKEFFFPIPHTHPKVKAIKVGPNSPLVYNEKNSAKILDQTKTNFDGIYGGGG 375 FPF LSMMSKEFFFPIPHTHPKVKA+K+G +SPL YN+ N+ KILDQ TNFDGIYGGG Sbjct 279 FPFFLSMMSKEFFFPIPHTHPKVKALKLGKDSPLKYNQNNNRKILDQANTNFDGIYGGG- 337 Query 376 VNAWRDAWSVGPYYVESFNQSQIVFKRNKEYDDHITPNLPKTREGNEQPIPTMINYFQPG 435 VNAW+D WSVGPYYVESFNQ+QIVFKRN+ YD ITPNLPKTR+ NE+PIP +++YFQPG Sbjct 338 VNAWKDTWSVGPYYVESFNQAQIVFKRNQIYDAIITPNLPKTRQENEKPIPAIVSYFQPG 397 Query 436 ATPEVFYSNYIAGGLSSAGVSYSQQEDARSRFASTGDLRWVKVQKTAQSAQITYSSRPYI 495 ATPEVFYS+YIAGGLS++ V YSQQ+DARSRF TGDLRW+K+QKTAQSAQ+TYS +PY+ Sbjct 398 ATPEVFYSSYIAGGLSASAVPYSQQQDARSRFNGTGDLRWLKIQKTAQSAQVTYSGKPYV 457 Query 496 LEGETVKTNSNITETEAKFLYNSESEEALTIRAGINGLINWQNLAIILLPNSGDLNYSIV 555 TV+ N+NITETEAKFLYNSESEEALTIRAGINGLINW+NLAII LPNSGD+NYS V Sbjct 458 ANDSTVQLNANITETEAKFLYNSESEEALTIRAGINGLINWKNLAIIDLPNSGDVNYSTV 517 Query 556 PFGIFKEKGKDVQVKQKNTGQASQGSDLMNDYYYKI 591 PFGIFKEK + T + + NDYYYKI Sbjct 518 PFGIFKEKPAN------GTSSGTNTDGIENDYYYKI 547 Lambda K H a alpha 0.311 0.128 0.363 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 72048564 Query= gi|13508199|ref|NP_110148.1| Trk-type K+ transport systems, membrane components [Mycoplasma pneumoniae M129] Length=565 Score E Sequences producing significant alignments: (Bits) Value gi|12045179|ref|NP_072990.1| cation transporter, putative [Mycopl... 771 0.0 >gi|12045179|ref|NP_072990.1| cation transporter, putative [Mycoplasma genitalium G-37] Length=558 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/557 (69%), Positives = 457/557 (82%), Gaps = 2/557 (0%) Query 10 KLLAWLKLILWGDSISQRIFHFYIYCILLGAVLLFLPFALKTDYQKVISYEVDLQGHTIS 69 KL WLK I WG++I+QRIF FYIYCIL G++LLFLP AL+ +YQKV+SY +D QG Sbjct 3 KLTTWLKKIGWGETITQRIFCFYIYCILFGSLLLFLPIALQDNYQKVVSYGIDWQGKRFE 62 Query 70 KQTASYGFLDALFLAVSAFSDTGLSTTVVSETYSVFGQTVLAILLQLGGIGFVVIAFLVW 129 ++T Y FLDALFL+ SAFSDTGLST VVS+TYS+FGQ VLA+LLQLGGIGFVVIAFL W Sbjct 63 QKT-DYNFLDALFLSTSAFSDTGLSTVVVSKTYSIFGQIVLAVLLQLGGIGFVVIAFLAW 121 Query 130 RLFKLHKKGKYSFYEKLMLQSERGGSKLGTTSEMIVVSVLFLFMVELLYGFLYTILFYFI 189 RLF HKK +YSFYEKLMLQSERGGSKLG TSEMI+VS++FLF+VEL+YGFLY ILFYFI Sbjct 122 RLFNFHKKEQYSFYEKLMLQSERGGSKLGNTSEMILVSIIFLFIVELIYGFLYGILFYFI 181 Query 190 PAFESASVFQSSGKVSNQLKALIVDSTKRLPVVHNLNLAFQYGFFHSLSAVNNAGIDLLG 249 P FE A++F KVS QLKAL+VDS + + +++N AFQ GFFHSLSAVNNAGIDL+G Sbjct 182 PGFEPANLFADHAKVSTQLKALVVDSNQTIAAFNDINKAFQAGFFHSLSAVNNAGIDLIG 241 Query 250 ANSFAPYRTNWGIVIQWLAISQIIFGGIGYPVLFDAYEAIKKRRLYGKYYKHQFSLFTKL 309 +SF PYR GI+IQWL ISQIIFGGIGYP LFD +EAIKK+ YG++ KHQFSLFTKL Sbjct 242 GSSFVPYRNGLGIIIQWLTISQIIFGGIGYPCLFDGFEAIKKKIKYGRHTKHQFSLFTKL 301 Query 310 AVLTNLIVTAWCFLMLLMVEFIVITSLTNTIAHLNVEKAYLVEG-LKNKSNQELQSLIFG 368 V+TN++V F +LLMVEFI SLTNTI + + EK L+ L+++SNQ + + +FG Sbjct 302 TVITNIVVILLFFTLLLMVEFIASDSLTNTIVNFSDEKKSLINTQLQSQSNQAIHASVFG 361 Query 369 PIPAASRVMQLWFGVISSRSAGFSVFPWSAESDIIKGIMVIAMFIGGSPSSTAGGIRTTT 428 P ASRVMQL+F VISSRSAGFSVFP ++E K I+ +AMFIG SPSSTAGGIRTTT Sbjct 362 NNPNASRVMQLFFMVISSRSAGFSVFPVASEIQTTKIIIALAMFIGASPSSTAGGIRTTT 421 Query 429 LAVIFLTLKAKFRGQKEVKVFKRSIDGQTVINAFLVAVFGLVSVVLIAILLPLSMQQPLS 488 LAVIFL L AKF+GQKEVK FKRSID TVI+AFLV + L++V+L A+LLPLSM+QP+S Sbjct 422 LAVIFLALVAKFKGQKEVKAFKRSIDQTTVIDAFLVLIISLIAVLLTAVLLPLSMEQPVS 481 Query 489 FVDSLFETTSAFGTVGLSSGATKIMALEPTRNLFNYLTLGLLMIMGQVGVSSSVLTFVKK 548 F+D+LFETTSAFGTVGLSSGAT +AL+P RN FN+L L LLM+MGQVGVSSSVLTFV+K Sbjct 482 FIDALFETTSAFGTVGLSSGATVNIALDPNRNTFNFLALCLLMVMGQVGVSSSVLTFVRK 541 Query 549 HPQGNSFSYPREDVKVG 565 HP+ NS+SYP+E VK+G Sbjct 542 HPKANSYSYPKEAVKIG 558 Lambda K H a alpha 0.326 0.139 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 68418210 Query= gi|13508200|ref|NP_110149.1| KtrA, K+ Na+ uptake [Mycoplasma pneumoniae M129] Length=231 Score E Sequences producing significant alignments: (Bits) Value gi|12045180|ref|NP_072991.1| hypothetical protein MG323 [Mycoplas... 369 5e-133 >gi|12045180|ref|NP_072991.1| hypothetical protein MG323 [Mycoplasma genitalium G-37] Length=227 Score = 369 bits (946), Expect = 5e-133, Method: Compositional matrix adjust. Identities = 176/226 (78%), Positives = 201/226 (89%), Gaps = 0/226 (0%) Query 1 MKRADFCIIGLGRFGMQVAHSLKENNFTLVLIDNDQHKTNTAAQEFDHVVCCDGSNLTAL 60 MKRADFCIIGLGRFGMQVA SLKENNF L+LID D KT+TA+Q+FD+V+CCD SNLTAL Sbjct 1 MKRADFCIIGLGRFGMQVAQSLKENNFNLLLIDLDDKKTDTASQQFDYVICCDASNLTAL 60 Query 61 AELQLEEFSAVIVGVTNIEASIMICANLRELGQKNIIARAKNEVHNRVLRTMGIREALIP 120 ELQ++EF+ VIVGVTNIEASIMICANLRELGQKNIIA+AKNEVH RVL TMGIREALIP Sbjct 61 EELQIDEFAGVIVGVTNIEASIMICANLRELGQKNIIAKAKNEVHKRVLSTMGIREALIP 120 Query 121 EKIVGKNLVIRLIHGMETEIINLGNDILFVRAPVNNKKLFNRTLGEINIREHTNANLISI 180 EKIVGKNLVIRLIHG+E EIINLGN+I+F+R+ VNNK FN+ L EIN R++T+AN+ISI Sbjct 121 EKIVGKNLVIRLIHGLENEIINLGNEIIFIRSAVNNKAFFNKRLEEINFRQNTDANIISI 180 Query 181 MRNGKDVVFPLGPNTQIQPGDVITAVCQLSGVNQYLRYINPNDKNK 226 MR+ K VVFPLGPNT+IQPGD+ITAVCQ +N+YL YINP KNK Sbjct 181 MRSNKTVVFPLGPNTEIQPGDIITAVCQQKSLNKYLNYINPKTKNK 226 Lambda K H a alpha 0.321 0.137 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23534164 Query= gi|13508201|ref|NP_110150.1| hypothetical protein MPN462 [Mycoplasma pneumoniae M129] Length=270 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 225 9e-69 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 225 bits (573), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 123/261 (47%), Positives = 167/261 (64%), Gaps = 35/261 (13%) Query 7 KDATV-DSSKQSTESLKGEESSSSSTTSSTSTTQRGGSSGDTKVKALQVAVKKKSDSEDN 65 KD+ V DSSKQ GE+ S ++ +S +S G + T+ KAL+V V++ S S+ Sbjct 242 KDSPVKDSSKQ------GEKLSETTASSMSS-----GMATSTRAKALKVEVERGSQSD-- 288 Query 66 GQIELETNNLANAPIKRGSNNNQQVQLKADDFGTSPSSSESGQSGTPTPWTPWLATEQIH 125 L N+ A P+K N++ +V+L+A+ T W P L T+QI Sbjct 289 ---SLLKNDFAKKPLKH-KNSSGEVKLEAEKEFTEA-------------WKPLLTTDQIA 331 Query 126 KDLPKWSASILILYDAPYARNRTAIDRVDHLDPKVMTANYPPSWRTPKWNHHGLWDWKAR 185 ++ A+++ YDAPY+ N TA VDH+DPK M NYPPSW+TPKWNHHG+WD+ AR Sbjct 332 RE-KGMGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKTPKWNHHGIWDYNAR 390 Query 186 DVLVQTTGFFNPRRHPDWFDQGQAVAENTQTGFDTDDTDNKKQGFRKQGEQSPAPIALPF 245 ++L+QTTGFFNPRRHP+WFD+GQA A+NT GF DTD+KK GF+K S +PIALPF Sbjct 391 NLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTDHKKDGFKK---NSSSPIALPF 447 Query 246 EAYFANIGNLTWFGQALLVFG 266 EAYFANIGN+ G ++ +FG Sbjct 448 EAYFANIGNMVAIGNSVFIFG 468 Lambda K H a alpha 0.311 0.127 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28649133 Query= gi|13508202|ref|NP_110151.1| hypothetical protein MPN463 [Mycoplasma pneumoniae M129] Length=157 ***** No hits found ***** Lambda K H a alpha 0.316 0.128 0.441 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13480629 Query= gi|13508203|ref|NP_110152.1| involved in cytadherence [Mycoplasma pneumoniae M129] Length=445 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 361 7e-117 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 361 bits (926), Expect = 7e-117, Method: Compositional matrix adjust. Identities = 194/399 (49%), Positives = 255/399 (64%), Gaps = 47/399 (12%) Query 46 FQKYLNTTQALHQMGVIVPSLETWPGKPSTGIATRAAGGVSVQAATRQSTSTNEDLSNVI 105 F KYLNT QAL +G++ ++ NVI Sbjct 265 FNKYLNTKQALESIGILF---------------------------------DDQTPRNVI 291 Query 106 TQLYHTSTSQLAYLNGQIVVMGSDRVPSLWYWVVD---ERTTSGRATWWAHTELNWGTDK 162 TQLY+ STS+LA N IVVMG+ +PS+WYWVV+ + S + TW+A+T L+WG DK Sbjct 292 TQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQENASNKPTWFANTNLDWGEDK 351 Query 163 QKQFVENQLGFKDDSNSDSKNSNLKAQGLTQPAYLIAGLDVVADHLVFAAFKAGAVGYDM 222 QKQFVENQLG+K+ ++++S N ++ TQPAYLI+G+D V D ++F+ FKAG+VGYD Sbjct 352 QKQFVENQLGYKETTSTNSHN--FHSKSFTQPAYLISGIDSVNDQIIFSGFKAGSVGYDS 409 Query 223 TTDSNAS---TKDQVLAWSTTAGLDSDGGYKALVENTAGLNGPINGLFILLDTFAYVTPV 279 ++ S++S TKDQ LAWSTT LDS GYK LV N GLNGPING F + DTF++V P Sbjct 410 SSSSSSSSSSTKDQALAWSTTTSLDSKTGYKDLVTNDTGLNGPINGSFSIQDTFSFVVPY 469 Query 280 SGMKGGSKNTEAVQTKYPVKDDSKASAKIASLINASPLNSYGDDGVTVFDALGLNFNFKL 339 SG + T ++T YPVK D K++ KI SLINA+PLNSYGD+G+ VFDALGLN+NFK Sbjct 470 SGNHTNNGTTGPIKTAYPVKKDQKSTVKINSLINATPLNSYGDEGIGVFDALGLNYNFKS 529 Query 340 DEARLPSRTDQLLVYGIVNESELKSARENAQSTSDDNSNTKVKWTNTASHYLPVPYYYSA 399 ++ RLPSRTDQ+ VYGIV+ +EL+SA+ +A ST D TKV W+NT S YLPVPY YS Sbjct 530 NQERLPSRTDQIFVYGIVSPNELRSAKSSADSTGSD---TKVNWSNTQSRYLPVPYNYSE 586 Query 400 NFPEAGNRRRAEQRNGVITI---KKAIYPEVRGRQLQNI 435 +A +R E R +T K+I P+ + N Sbjct 587 GIIDADGFKRPENRGASVTTFSGLKSIAPDGFANSIANF 625 Lambda K H a alpha 0.311 0.126 0.362 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 52302084 Query= gi|13508204|ref|NP_110153.1| hypothetical protein MPN465 [Mycoplasma pneumoniae M129] Length=199 ***** No hits found ***** Lambda K H a alpha 0.330 0.140 0.514 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 19150005 Query= gi|13508205|ref|NP_110154.1| hypothetical protein MPN466 [Mycoplasma pneumoniae M129] Length=140 ***** No hits found ***** Lambda K H a alpha 0.316 0.132 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11381838 Query= gi|13508206|ref|NP_110155.1| hypothetical protein MPN467 [Mycoplasma pneumoniae M129] Length=101 ***** No hits found ***** Lambda K H a alpha 0.318 0.135 0.375 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6357851 Query= gi|13508207|ref|NP_110156.1| hypothetical protein MPN468 [Mycoplasma pneumoniae M129] Length=208 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 85.9 2e-21 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 85.9 bits (211), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/207 (34%), Positives = 98/207 (47%), Gaps = 46/207 (22%) Query 1 MLDYIPWIGNGYRYGNGYKGVAGAGHSATNGSPAGNTSSTTQSNDVAPTFSNVGVGLKAN 60 LD++PWIGNG S + + S++ S+ PTFSN+ VG+K+ Sbjct 764 FLDFLPWIGNG-----------------KPFSNSPSPSTSASSSTPLPTFSNINVGVKSM 806 Query 61 VQGTLGDSQTTTVGGHQWPTLDPANLQLWTGAEWRNDSKTQNNTTTNENHTKFASATGSG 120 + L T +W + + +WTGA +R S Q N E Sbjct 807 ITQHLNKENT------RWVFIPNFSPDIWTGAGYRVQSANQKNGIPFE------------ 848 Query 121 QQQGSTTTTSAGNPDSLKQDKADKSGNSISVQEATSGDNLTNYTNLPPNLTPTSDWPNAL 180 Q + ++ +P+S +K SG S T Y LP +++PTSDW NAL Sbjct 849 -QVKPSNNSTPFDPNS-DDNKVTPSGGS---------SKPTTYPALPNSISPTSDWINAL 897 Query 181 SFTNKNNAQRAQLFLRGLLGSIPVLVN 207 +FTNKNN QR QL LR LLG+IPVL+N Sbjct 898 TFTNKNNPQRNQLLLRSLLGTIPVLIN 924 Lambda K H a alpha 0.305 0.124 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20445870 Query= gi|13508208|ref|NP_110157.1| hypothetical protein MPN469 [Mycoplasma pneumoniae M129] Length=243 Score E Sequences producing significant alignments: (Bits) Value gi|12045181|ref|NP_072992.1| hypothetical protein MG323.1 [Mycopl... 233 7e-79 >gi|12045181|ref|NP_072992.1| hypothetical protein MG323.1 [Mycoplasma genitalium G-37] Length=269 Score = 233 bits (595), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 133/243 (55%), Positives = 174/243 (72%), Gaps = 1/243 (0%) Query 1 MSKINDKLTEINTVEYEVASKHSQYLFYSRFGLLDTAAYFLFLLSFFVTAVMFLVGIFHT 60 ++KI+DKL+EIN EY+V SKHS YLFYSRFGLLDT YFLF L FF+ V+FL G+FHT Sbjct 28 INKISDKLSEINVAEYQVVSKHSNYLFYSRFGLLDTFVYFLFFLCFFLNNVLFLAGVFHT 87 Query 61 EQFTLNDQNQGISGFYLFWNVKKPADIFNANFVYSISSFGIAILALGLFSLFLMIFLGYR 120 +QFT N+ N G + FYLFW V+KP DI A+ Y IS +GIA L GL SL L++FL +R Sbjct 88 KQFTFNEVN-GFNQFYLFWTVEKPTDIIQASITYQISQYGIANLVFGLISLALLVFLSFR 146 Query 121 WAISLFIKSQITKWERVIFSTGFYFSVVAYCFWIALMLLFLVLSDQHFFPRTTTQLKSNP 180 W +SLF KSQ TKWER+ ++TGF+ S+V Y WI LM+LFLVL DQ FF R T +++S Sbjct 147 WTVSLFFKSQTTKWERIGYTTGFFISIVVYLLWILLMVLFLVLLDQQFFERDTQKIQSAT 206 Query 181 NLSLFFRISHKDNVFSSRLNQLGAFATALCITLVVYELPFLGLFAFNWNKQRAKAIFCRK 240 SLFF + + + V+ S+LN G FATA I+LV Y F+ +FAFN+NK + K +F + Sbjct 207 RFSLFFNVENNNGVYLSKLNSFGVFATAWAISLVFYSFFFIAIFAFNYNKTKLKQLFKKS 266 Query 241 RKQ 243 + + Sbjct 267 KAK 269 Lambda K H a alpha 0.333 0.143 0.443 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 25027975 Query= gi|13508209|ref|NP_110158.1| X-Pro dipeptidase [Mycoplasma pneumoniae M129] Length=354 Score E Sequences producing significant alignments: (Bits) Value gi|12045182|ref|NP_072993.1| aminopeptidase P (pepP) [Mycoplasma ... 595 0.0 >gi|12045182|ref|NP_072993.1| aminopeptidase P (pepP) [Mycoplasma genitalium G-37] Length=354 Score = 595 bits (1534), Expect = 0.0, Method: Compositional matrix adjust. Identities = 278/354 (79%), Positives = 313/354 (88%), Gaps = 0/354 (0%) Query 1 MHNELQQKLAVLHKLLQDNKADAILIGSDQNRFWLTGFPSSAGWLVVHKQRVNLFIDGRY 60 M +ELQQK+ VL LL+ NKADAILIGSDQNRFWLT FPSSAGWL++ + LFIDGRY Sbjct 1 MISELQQKITVLKDLLKTNKADAILIGSDQNRFWLTNFPSSAGWLIITSNKAKLFIDGRY 60 Query 61 FEAAKTAIDPLVKVELFTTYKQVKALCEQVGVKHLLIEGDYLTFNYQNFIKELCAQYTVI 120 +EAA+ I+P+V+VELF ++KQVKA CE G+ HLLIEGDYLTFNYQ++I+ +C QYTVI Sbjct 61 YEAARNFINPIVEVELFVSFKQVKAFCESNGINHLLIEGDYLTFNYQDWIQAICKQYTVI 120 Query 121 NAQEIRRQKLPSEILAIEKVVEITRKVAVKLKRFIQPGMTELFIAQWITDQLVKAGGAKN 180 NAQEIRR KLPSEI AIEK V+ITRKVAVKLKRFI+P MTELFI+QWIT++LVK GGAKN Sbjct 121 NAQEIRRVKLPSEIQAIEKAVDITRKVAVKLKRFIKPKMTELFISQWITNELVKQGGAKN 180 Query 181 SFDPIVATGKNGANPHHKPSKLKVKSGDFVTCDFGTIYNGYCSDITRTFLVGKKPNNEVL 240 SFDPIVATGKNGANPHHKP+K VK GDF+TCDFGTIYNGYCSDITRTFLVGKKP + L Sbjct 181 SFDPIVATGKNGANPHHKPTKTIVKEGDFITCDFGTIYNGYCSDITRTFLVGKKPKSAKL 240 Query 241 LKAYKKVDEANMAGINAANTQLTGAEVDKVCRDIIEASEFKDYFVHSTGHGVGLDIHEMP 300 L AYKKV+EAN+AGINA NT LTG++VDKVCRDIIE SEFKD+FVHSTGHGVG+DIHEMP Sbjct 241 LSAYKKVEEANLAGINAVNTTLTGSQVDKVCRDIIENSEFKDFFVHSTGHGVGIDIHEMP 300 Query 301 NVSTSYNKLLCENAVITIEPGIYIPSVGGIRIEDMVLVKDHKSVWLSAKIPRAF 354 NVS SYNKLLCEN V+TIEPGIYIP++GGIRIEDMVLVK KSVWLS IPRAF Sbjct 301 NVSQSYNKLLCENGVVTIEPGIYIPNLGGIRIEDMVLVKKEKSVWLSKSIPRAF 354 Lambda K H a alpha 0.320 0.137 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 40062895 Query= gi|13508210|ref|NP_110159.1| ribosomal protein L33 [Mycoplasma pneumoniae M129] Length=53 Score E Sequences producing significant alignments: (Bits) Value gi|12045183|ref|NP_072994.1| ribosomal protein L33 (rpL33) [Mycop... 101 6e-33 >gi|12045183|ref|NP_072994.1| ribosomal protein L33 (rpL33) [Mycoplasma genitalium G-37] Length=53 Score = 101 bits (252), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 50/53 (94%), Positives = 52/53 (98%), Gaps = 0/53 (0%) Query 1 MAVKRSTRLGCNDCREINYLTFKNVKKNPEKLALNKFCSRCRKVVVHKEVKRK 53 MAVKRSTRLGCN+C EINYLTFKNVKKNPEKLALNKFCSRCRKVV+HKEVKRK Sbjct 1 MAVKRSTRLGCNECSEINYLTFKNVKKNPEKLALNKFCSRCRKVVLHKEVKRK 53 Lambda K H a alpha 0.324 0.134 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4410315 Query= gi|13508211|ref|NP_110160.1| hypothetical protein MPN472 [Mycoplasma pneumoniae M129] Length=293 Score E Sequences producing significant alignments: (Bits) Value gi|12045184|ref|NP_072995.1| hypothetical protein MG326 [Mycoplas... 412 5e-148 >gi|12045184|ref|NP_072995.1| hypothetical protein MG326 [Mycoplasma genitalium G-37] Length=295 Score = 412 bits (1058), Expect = 5e-148, Method: Compositional matrix adjust. Identities = 201/291 (69%), Positives = 238/291 (82%), Gaps = 2/291 (1%) Query 2 KTAIITDSTASIKEGEIQDVYVLPLQVIINGQDTYRDGKDIDYDRVYQLLKEHPQGLNIS 61 KTAIITDSTASIK GEI VY+LPLQVI++G+ ++RDG +IDYD V++LLKE+P GLNIS Sbjct 3 KTAIITDSTASIKPGEINGVYILPLQVIVDGEKSFRDGIEIDYDHVHKLLKENPHGLNIS 62 Query 62 TSLPRQADLIELIEAIKDKYDRFVFLPLSKGLSGTYDMIVQAVKPLS--TPKKEFVVLET 119 TSLPRQ+DL+++ E IK KYDRF+FLPLSKGLSGTYDM+VQ K LS KEF+V ET Sbjct 63 TSLPRQSDLLKIFEEIKTKYDRFIFLPLSKGLSGTYDMLVQLAKELSEQNKDKEFLVFET 122 Query 120 SDIAISLKWLVQEVKALTDTNCPTKAIAEVVDQHKQSIFTAVTVKNLVQLRKGGRISGLK 179 SDIAISLKWLV+++KAL D C + I V+ HKQ+I +AVT+KNLVQ+RKGGRISGLK Sbjct 123 SDIAISLKWLVEDIKALVDKGCDNQTIKAKVESHKQNILSAVTLKNLVQMRKGGRISGLK 182 Query 180 KIIATLLRVKPIIFFDKGVNTLSGKAFTFVQALEKIFTFVKSKFGDNFKIKRIGFCNAFT 239 K I TLLRVKPII FDKGVNTL K F+F QA+EKIF FVK+KFGDN+KIKRIGFC +F Sbjct 183 KFITTLLRVKPIILFDKGVNTLGAKVFSFSQAVEKIFGFVKTKFGDNYKIKRIGFCYSFC 242 Query 240 PVKAKEVKALILDFLHTNKITLQREIESSFITSAIIAHTGIDAFSISLLLD 290 A E+K +I DF+ NKI Q EIE++FITS II HTGIDAFSISLL+D Sbjct 243 KNYANEIKKIITDFIEHNKINFQNEIENAFITSVIIVHTGIDAFSISLLID 293 Lambda K H a alpha 0.321 0.137 0.380 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31676927 Query= gi|13508212|ref|NP_110161.1| triacylglycerol lipase (lip) 2 [Mycoplasma pneumoniae M129] Length=268 Score E Sequences producing significant alignments: (Bits) Value gi|12045185|ref|NP_072996.1| lipase/esterase, putative [Mycoplasm... 379 5e-136 gi|12045166|ref|NP_072977.1| lipase/esterase, putative [Mycoplasm... 84.3 4e-21 gi|12045203|ref|NP_073014.1| lipase/esterase, putative [Mycoplasm... 71.2 2e-16 >gi|12045185|ref|NP_072996.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length=268 Score = 379 bits (974), Expect = 5e-136, Method: Compositional matrix adjust. Identities = 176/266 (66%), Positives = 219/266 (82%), Gaps = 0/266 (0%) Query 1 MASSKSDPFQSIFAFKPHRKRHNFIFLHGFGSEYSSFKHVFKLFEKKRWSFFAFNFPGHG 60 + S+K+ F SIFAFKP ++++ FIFLHGFGSEY+SF +F LF+KK+W FF FNFPGHG Sbjct 2 LTSNKNTLFNSIFAFKPKKRKNVFIFLHGFGSEYASFSRIFSLFKKKKWPFFTFNFPGHG 61 Query 61 NNQSNSVDELKLKHYVELVCDFIIQKRLKKVVLVGHSMGGAIAVLVNAVLRERIKALVLV 120 +N+S D+LKL H+V+LVCDFI+QK+L V+L+GHSMGGA+AVLVN V+ +IKAL+LV Sbjct 62 DNESTDTDQLKLNHFVDLVCDFIVQKKLNNVILIGHSMGGAVAVLVNKVIPLKIKALILV 121 Query 121 APMNQTSFVVSKKRILDTLFTRSPKNQQDFIEHTDDKKSIVNFFVGAFKKRVNFKTLYSD 180 APMNQTSF V+KKRILDT F R+ N +DF+EH + +KS++ + AFKKR FKTLYSD Sbjct 122 APMNQTSFSVNKKRILDTFFKRNNSNHKDFVEHEEKRKSLLKIAINAFKKRTTFKTLYSD 181 Query 181 MVQNAKYGNDYLEAGYNAIKDKPTLVVLGSNDIVTPTKASVEYLAKHSETIIFKIIDGVG 240 MVQNAKYGND LE Y I +KPTLV+LG+NDIVTPTKASV+YLA S+ IIFK+IDGVG Sbjct 182 MVQNAKYGNDSLERAYEMIGNKPTLVILGANDIVTPTKASVDYLANKSDKIIFKVIDGVG 241 Query 241 HSPHYYAPKLFFDYIGEFLDNIKRNK 266 HSPH APKLFFDY+ EFLDN+K+ + Sbjct 242 HSPHDSAPKLFFDYVLEFLDNLKKQR 267 >gi|12045166|ref|NP_072977.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length=268 Score = 84.3 bits (207), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/231 (29%), Positives = 119/231 (52%), Gaps = 24/231 (10%) Query 48 RWSFFAFNFPGHGNNQSNSVDELKLKHYVELVCDFIIQKRLKKVVLVGHSMGGAIAV-LV 106 R+SF+A N+PGHGN+ N+ +L+ +++E+ F + LK V+L GHS+GG +AV L Sbjct 45 RYSFYAINYPGHGNSVINNPKQLEFSYWLEITKQFFDKHNLKDVILFGHSIGGGLAVALT 104 Query 107 NAVLRERIKALVLVAPMNQTSFVVSKKRILDTLFTRSPKNQQDF------IEHTDDKKSI 160 N + ++ KA++L AP+N + V + I+ L P DF + + +KK Sbjct 105 NYLSSDQYKAVLLEAPLN-PAIVETPLNIVQNLI---PDPDSDFAVIQKCLVYNIEKKLG 160 Query 161 VNFFVGAFKKRVNFKTLYSD-----MVQNAKYGNDYLEAGYNAIK-DKPTLVVLGSNDIV 214 NF + +R K+++ + M++ + + + +K + P L + G D + Sbjct 161 ANF--KEYCEREKQKSIHQNQRLKVMLEPSTLKQNIVLINAAFLKLNCPALWIHGKQDGI 218 Query 215 T---PTKASVEYLAKHSETIIFKIIDGVGHSPHYYAPKLFFDYIGEFLDNI 262 P+KA E L +++ I FK I+ H+P++ P+ F + +F I Sbjct 219 IKYLPSKAYYESL--NNKQIQFKAIEAAAHTPYFEQPQKFLSLVNDFFQLI 267 >gi|12045203|ref|NP_073014.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length=273 Score = 71.2 bits (173), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 46/235 (20%) Query 15 FKPHRK--RHNFIFLHGFGSEYSSFKHVFKLFEKKRWSFFAFNFPGHGNNQSNSVDELKL 72 F+P +K + +F HGF +S F+ +K + ++A +PGH N + EL Sbjct 19 FQPAKKTKKQTVVFAHGFSVFHSYFQSFYKTLTD--YDYYAPLWPGHNVNGFD-YKELSP 75 Query 73 KHYVELVCDFIIQKRLKKVVLVGHSMGGAI-AVLVNAVLRERIKALVLVAPMNQTSFVVS 131 HY EL+ FI K L+ +VL+GHSMG A+ + +N + +R++ L+L+AP++ + + Sbjct 76 IHYGELLAAFIENKDLENIVLIGHSMGAAVCSYAMNLLNAKRVEKLILLAPLSYCNLL-- 133 Query 132 KKRILDTLFTRSPKNQQDFIEHTDDKKSIVNFFVGAFKKRVNFKTLYSDMVQNAKYGNDY 191 R K + F D + + NF + F+T +S++ + N+ Sbjct 134 ----------RYFKIKSSF--KKDKAERMANF-------KAMFQTKFSNLTDENSWENEL 174 Query 192 L-------EAGYNAIKDKPTL------------VVLGSNDIVTPTKASVEYLAKH 227 + N +K+ P L +VL ND+ PTK ++ Y K+ Sbjct 175 SKHSKMAKKLSNNILKELPVLNKTYKNLKLPVFLVLAQNDLFMPTKLTLSYFNKY 229 Lambda K H a alpha 0.323 0.138 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28364067 Query= gi|13508213|ref|NP_110162.1| coiled coil protein, putative structural protein involved in cytosceleton [Mycoplasma pneumoniae M129] Length=1033 Score E Sequences producing significant alignments: (Bits) Value gi|12045186|ref|NP_072997.1| hypothetical protein MG328 [Mycoplas... 163 4e-43 >gi|12045186|ref|NP_072997.1| hypothetical protein MG328 [Mycoplasma genitalium G-37] Length=756 Score = 163 bits (412), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 138/391 (35%), Positives = 205/391 (52%), Gaps = 79/391 (20%) Query 663 FDSKTLTLTKQQLEQTQFDLSLTQEQLATFKQQNQSLTDKLMASETQLNHLQQS------ 716 FD K Q++Q +L Q+ ++ K +N L D++ + ++ N + Sbjct 421 FDENETKFDKLQVKQQALNLDY-QKTISALKHENDVLLDEIEWTRSKDNDFNNTKNSFEE 479 Query 717 -----DENLTQLQTQHELLQ------ESYNKLQDEAN-----HTQQQFHQAQNELDAAHQ 760 DE L L Q++ LQ E +N+ + N + QQQ +QN + A Sbjct 480 QKKALDEKLNGLTIQNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNLFNVAQD 539 Query 761 QLALFKQNNEELTDKCSNIQNELHDLNRVKTNWENLNTEHNLLQDKYAQQKEQMQHEHSN 820 +LA ++ N L +K +++++EL + EN N NLL Sbjct 540 KLATLEEVNLALNEKINDLEDEL-------SGSENSN---NLL----------------- 572 Query 821 LAQIQAEHELLQESYNKVKAELNEIQITNLNEANAQYQDLLSAYELLQSNHNKLKQELQV 880 A++QA+HE+LQESY K+K + +++ LN+AN QYQDLLSA+E S K KQ L Sbjct 573 -AKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLSAFEETNSELEKAKQSLSA 631 Query 881 LNQVNLEKQQLAQKLHNTHQSLSQTHAELTQLQAAYNNLQATPPVSDELLEQFNQVQLEK 940 + E QL Q++++ L+ A LQ TP SDE L++ +++EK Sbjct 632 SDS---ENNQLKQQINS--------------LENAKKELQFTPVTSDEHLDELETLKIEK 674 Query 941 QRLLQQNLALVHELQYFNELNSSQTHEIKTKQDETVKEVIIVEKEIPVPPEKKPRLKKRD 1000 ++L +N AL ++LQYFN+++++QT EIK DE + PV KKPR+KKRD Sbjct 675 EQLFLENQALQNQLQYFNDISANQTEEIKEASDE----------DKPVEI-KKPRIKKRD 723 Query 1001 IVIENKEDALGKLSKKERIQAYAERLAKING 1031 VI+NK+D L KLSKKERIQAYAERLAKIN Sbjct 724 FVIQNKDDKLAKLSKKERIQAYAERLAKINA 754 Score = 160 bits (405), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 123/395 (31%), Positives = 229/395 (58%), Gaps = 33/395 (8%) Query 406 NLTQELNELQQKLFKSQNNSLLLARLEE----ENRTLKQHLQNNLPEANQLNFVLEKQLE 461 +L QE+++L+++L + ++ L +L++ ENR L + LQN N L+ + ++LE Sbjct 268 DLEQEIDDLKRRLSEEKSKHLHTKKLQDDLLQENRDLYEQLQNKPVAINPLSDEVNEELE 327 Query 462 QLQQDKHSLTLQIEQYKFDSKKHQEQLALIPSLRSEINSLETEVISLKQTNQRLSLIERE 521 L+Q+K L+ Q++ K S Q+QLAL+P L ++IN L+ ++++ ++ NQRL L+E+E Sbjct 328 NLKQEKALLSDQLDALKNKSSNVQQQLALLPVLNNQINELQNQLLTAREANQRLDLVEQE 387 Query 522 NNFLKTEIKQLRETKLNDENTKYRNLLKQYELMRADSDAKLKELEHEQHLAHQHHQEQLA 581 N+FLK E+K+L + NDEN KY +LL QYEL+ +++ K +L+ +Q + +Q+ ++ Sbjct 388 NDFLKNELKKLHDNTSNDENEKYDDLLNQYELLFDENETKFDKLQVKQQALNLDYQKTIS 447 Query 582 QLQRHNEALVKELDQVKATNFELGLAAQGFEQQKVVLEQKNSSLLASLQAAEENVQALGI 641 L+ N+ L+ E++ ++ + + FE+QK L++K + L I Sbjct 448 ALKHENDVLLDEIEWTRSKDNDFNNTKNSFEEQKKALDEK--------------LNGLTI 493 Query 642 TNSELQNQLNVLEFTHKEKTAFDSKTLTLTKQQLEQTQFDLSLTQEQLATFKQQNQSLTD 701 N +LQ+++ LE ++EK+ ++ L +QQL+ +Q ++ Q++LAT ++ N +L + Sbjct 494 QNQQLQDKIAELEEWNEEKSNLNTNQLVNLQQQLKDSQNLFNVAQDKLATLEEVNLALNE 553 Query 702 KLMASETQLNHLQQSDENLTQLQTQHELLQESYNKLQ-----------DEANHTQQQ--- 747 K+ E +L+ + S+ L +LQ HE+LQESY KL+ ++AN Q Sbjct 554 KINDLEDELSGSENSNNLLAKLQADHEILQESYGKLKTDFEKLKKNKLNDANEQYQDLLS 613 Query 748 -FHQAQNELDAAHQQLALFKQNNEELTDKCSNIQN 781 F + +EL+ A Q L+ N +L + ++++N Sbjct 614 AFEETNSELEKAKQSLSASDSENNQLKQQINSLEN 648 Lambda K H a alpha 0.309 0.124 0.323 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 130760177 Query= gi|13508214|ref|NP_110163.1| GTPase, GTP binding [Mycoplasma pneumoniae M129] Length=449 Score E Sequences producing significant alignments: (Bits) Value gi|12045187|ref|NP_072998.1| conserved hypothetical GTP-binding p... 702 0.0 gi|12044858|ref|NP_072668.1| thiophene and furan oxidation protei... 72.0 2e-15 >gi|12045187|ref|NP_072998.1| conserved hypothetical GTP-binding protein [Mycoplasma genitalium G-37] Length=448 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/444 (76%), Positives = 393/444 (89%), Gaps = 1/444 (0%) Query 1 MFTVAIIGRPNVGKSSLFNRLIQKPYAIISDTPNTTRDRIYGVGEWLTRQIAFIDTGGLI 60 MFTVAIIGR NVGKS+LFNRLIQKP AI+SDTPNTTRDRI+G+GEWL R+IAFIDTGGLI Sbjct 1 MFTVAIIGRTNVGKSTLFNRLIQKPMAIVSDTPNTTRDRIFGIGEWLKRKIAFIDTGGLI 60 Query 61 SQKTPLQQQIEVQVRAALSQANAIIFLVSYQEQISSDDFYVAKVLKKIKDKPILLVVNKS 120 +++TPLQQ I +QV+AALSQA AIIFLVS QEQ++SDDFYVAKVLKK KDKP++LVVNK+ Sbjct 61 AKQTPLQQLIALQVQAALSQAKAIIFLVSLQEQLNSDDFYVAKVLKKNKDKPVILVVNKA 120 Query 121 ENLKPDAYEPNLQQFYSFGFGQPVCVSASHGIGIGNLMDRLVKDNQLPPYHGSSETNPEV 180 EN P E L+ +YS GFG+PV +SA+HGIGIG+LMD LVK NQL P + + ++ Sbjct 121 ENFNPKTAEETLKDYYSLGFGRPVVISAAHGIGIGDLMDLLVKQNQLLPNENNDDL-AKI 179 Query 181 RFCVIGKPNVGKSSLINQLVQQNRVLVSDESGTTRDAIDIPLRVNGQNYLLIDTAGIRRK 240 RFCVIGKPNVGKSSLINQLV+QNRVLVS+ESGTTRDAID+PL+VNG+ +LLIDTAGI+RK Sbjct 180 RFCVIGKPNVGKSSLINQLVKQNRVLVSNESGTTRDAIDVPLKVNGEKFLLIDTAGIKRK 239 Query 241 GKIAPGIEAASYGKTQLAIARSNIILLMVDGSKPLSEQDEIIGGLAQAALIPVIILVNKW 300 GKI GIE ASY KT+LAIARSN+ILLMVDGSKP+SEQDE+IGGLAQAALIPVIILVNKW Sbjct 240 GKINMGIETASYIKTKLAIARSNVILLMVDGSKPISEQDEVIGGLAQAALIPVIILVNKW 299 Query 301 DLVQKDSNTMAKFKKQLQSQFQHLSFAPIVFISVKNNKRLHTIFEQLQIIQEQLTKKIST 360 DLV K++NT +KK L+ F+HL FAP++FISV N+RL+TIFEQL+IIQ QL K++T Sbjct 300 DLVLKNNNTTNAYKKMLKLHFKHLDFAPVLFISVLKNQRLNTIFEQLKIIQSQLETKVAT 359 Query 361 SLLNDVIQQAQLFNQAPLFKGGRLQVTYAVQTHSQTPHFVLFCNDPKFVHFSYARFLENK 420 LLNDVIQQAQL+NQ PLFKG RLQ+TYAVQT SQ PHFVLFCNDPK++HFSYARFLENK Sbjct 360 PLLNDVIQQAQLYNQPPLFKGKRLQITYAVQTKSQIPHFVLFCNDPKYLHFSYARFLENK 419 Query 421 IRESFGFSAVPITLYFKSKNARIR 444 IRE+FGF++VPI+LYFKSKNARIR Sbjct 420 IRENFGFNSVPISLYFKSKNARIR 443 >gi|12044858|ref|NP_072668.1| thiophene and furan oxidation protein (tdhF) [Mycoplasma genitalium G-37] Length=442 Score = 72.0 bits (175), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 61/94 (65%), Gaps = 3/94 (3%) Query 181 RFCVIGKPNVGKSSLINQLVQQNRVLVSDESGTTRDAIDIPLRVNGQNYLLIDTAGIRRK 240 + +IG+ NVGKSSL+N L+ Q++ +VS+ G+TRD ++ +NG ++DTAGIR+ Sbjct 219 KIAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRKH 278 Query 241 GKIAPGIEAASYGKTQLAIARSNIILLMVDGSKP 274 G+E A K+ +I ++N+++ ++D + P Sbjct 279 ---KSGLEKAGIKKSFESIKQANLVIYLLDATHP 309 Score = 58.2 bits (139), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 50/88 (57%), Gaps = 0/88 (0%) Query 2 FTVAIIGRPNVGKSSLFNRLIQKPYAIISDTPNTTRDRIYGVGEWLTRQIAFIDTGGLIS 61 F +AIIG NVGKSSL N L+ + AI+S+ +TRD + G I +DT G+ Sbjct 218 FKIAIIGETNVGKSSLLNALLNQDKAIVSNIKGSTRDVVEGDFNLNGYLIKILDTAGIRK 277 Query 62 QKTPLQQQIEVQVRAALSQANAIIFLVS 89 K+ L++ + ++ QAN +I+L+ Sbjct 278 HKSGLEKAGIKKSFESIKQANLVIYLLD 305 Lambda K H a alpha 0.320 0.136 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 52864472 Query= gi|13508215|ref|NP_110164.1| cytidylate kinase [Mycoplasma pneumoniae M129] Length=217 Score E Sequences producing significant alignments: (Bits) Value gi|12045188|ref|NP_072999.1| cytidylate kinase (cmk) [Mycoplasma ... 305 3e-108 >gi|12045188|ref|NP_072999.1| cytidylate kinase (cmk) [Mycoplasma genitalium G-37] Length=217 Score = 305 bits (781), Expect = 3e-108, Method: Compositional matrix adjust. Identities = 142/217 (65%), Positives = 182/217 (84%), Gaps = 0/217 (0%) Query 1 MYFQIAIDGPSSSGKSSVAKTVARQLGFEYFSTGKMYRAFAYVMQVNRLDVNLLLKVINQ 60 M +QIAIDGPSSSGKSSVAK +A +L F YFS+GKMYRAFAYVMQVNRL+++L LK+INQ Sbjct 1 MNWQIAIDGPSSSGKSSVAKKIAEELDFFYFSSGKMYRAFAYVMQVNRLNIDLFLKIINQ 60 Query 61 INWRFEHEKVFYNNADISEVILNQEIAQLASNLATNPEVRKMAVLRQQALAKNTNIVMDG 120 INWRFE + V+YNNADI+ VI Q +A +AS +A +P +RK+AV++QQ LA+N NIVMDG Sbjct 61 INWRFEKDAVYYNNADITTVITTQSVANIASKIAVDPNIRKIAVIKQQKLAENKNIVMDG 120 Query 121 RDIGTVVLKDAQLKYFLDAKPEIRAQRRAQDLGIAYDSDKAFQELVAEIKHRDAVDTSRT 180 RDIGTVVLK+AQLK+FLDAK EIRAQRR QD+GI+ ++K +EL+ E+K RD +D+SRT Sbjct 121 RDIGTVVLKNAQLKFFLDAKVEIRAQRRLQDMGISLSNEKKLKELIQELKQRDQIDSSRT 180 Query 181 ADPLVQAPDAIYIDSSNLTFQQVVELMVQQARTVFKL 217 ADPL +A DAIY+D+S L+F VV+ +++A+ VFKL Sbjct 181 ADPLKKAQDAIYLDTSELSFDAVVKQTLKEAKKVFKL 217 Lambda K H a alpha 0.320 0.133 0.362 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21525150 Query= gi|13508216|ref|NP_110165.1| hypothetical protein MPN477 [Mycoplasma pneumoniae M129] Length=209 Score E Sequences producing significant alignments: (Bits) Value gi|12045189|ref|NP_073000.1| hypothetical protein MG331 [Mycoplas... 183 1e-60 >gi|12045189|ref|NP_073000.1| hypothetical protein MG331 [Mycoplasma genitalium G-37] Length=212 Score = 183 bits (465), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 144/211 (68%), Gaps = 2/211 (1%) Query 1 MGRLEKFRFYRQNDDNNTTVQKALLKAQKQVASWKVELDELSPKILSHYQPFSELSANPV 60 MGR+EKFRFYRQ+ DNN V+KAL+ AQK SWK +L++++ KIL +Y PFSE + NPV Sbjct 1 MGRVEKFRFYRQSFDNNKIVKKALINAQKNTESWKKQLNKINQKILINYHPFSEFNKNPV 60 Query 61 KRKSEPNQVLQSLQTLINNFQTSDFQAIATQADALWLQIKHHDSATGYESWITDDRGMDK 120 K +EPN++ ++LQ LI + + +DF+ + + D +WL ++ +++GYESWI+DD+G++K Sbjct 61 KHHTEPNKLFKTLQELIVDLKNTDFKLLEEKVDRMWLNAAYNQTSSGYESWISDDKGIEK 120 Query 121 IDNLKRFFEDNEQQFIQQTQTFVVQLGNYNKALMALTNEKVSF-TTTDLSQP-LASSYNP 178 I++L +F+E NE+Q++++T L YNK L + E +F + D +P L ++ Sbjct 121 INHLSKFYEANEKQWLKKTSNLTSDLKEYNKILTVFSTESFAFKKSIDNIEPNLFNANKA 180 Query 179 LFKRILLSLLVFFISSLVGLVVLLTLLFTSL 209 +FK ++++L+ F + S++ ++ L + F S Sbjct 181 IFKNLVITLISFMLFSILFFLIFLIVSFVSF 211 Lambda K H a alpha 0.319 0.132 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20377142 Query= gi|13508217|ref|NP_110166.1| similar to spore coat protein [Mycoplasma pneumoniae M129] Length=235 Score E Sequences producing significant alignments: (Bits) Value gi|12045190|ref|NP_073001.1| hypothetical protein MG332 [Mycoplas... 362 2e-130 >gi|12045190|ref|NP_073001.1| hypothetical protein MG332 [Mycoplasma genitalium G-37] Length=239 Score = 362 bits (930), Expect = 2e-130, Method: Compositional matrix adjust. Identities = 177/234 (76%), Positives = 208/234 (89%), Gaps = 0/234 (0%) Query 1 MPRKHLIASQTNKKQQSNAKQLQKLAKRIAAAVKKGGSNIDANPQLKVAVELALAHGLSA 60 MPRKHLIA+QTNKKQQ++AKQLQKLAKRIA+AVKKGG+NI +NP LKVAV+LALA GLS Sbjct 1 MPRKHLIANQTNKKQQTSAKQLQKLAKRIASAVKKGGTNIQSNPHLKVAVDLALAKGLSM 60 Query 61 DSIKRNIHGSEKDPTKLSEFCYEIFGPNGVGIIVFGLTDNPNRLLSSLNGYIAKLKAQLA 120 DSIKRNIHGSEKD TK+SEFCYEIFGPNGVGIIVFGLTDNPNRLLSSLNGY+AKLK QLA Sbjct 61 DSIKRNIHGSEKDTTKISEFCYEIFGPNGVGIIVFGLTDNPNRLLSSLNGYLAKLKGQLA 120 Query 121 KPNSVKINFEEKGIALVKHNNFTQDELIELLISNNINLLDLNEDDDSFEVVVDSPSYFAL 180 KPNSVKINF+E+GI V NN+ +D+LIELLI +NINL+D++ D++ FE+ + S SYF Sbjct 121 KPNSVKINFQEEGIIFVNKNNYLKDDLIELLILDNINLIDVDYDEECFEISLHSNSYFHA 180 Query 181 KDLLVKNSFTIEASELRLIPLLTVELNAEQHTLLNRFLNACEEDDDIQTVVHNA 234 K+LL KN+F+I SE++L+PLLTV+L+ Q TLL+RFLNACEEDDDIQ VVHNA Sbjct 181 KELLKKNNFSIVDSEIKLVPLLTVDLDRNQQTLLSRFLNACEEDDDIQFVVHNA 234 Lambda K H a alpha 0.315 0.133 0.362 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23883839 Query= gi|13508218|ref|NP_110167.1| ACYL CARRIER PROTEIN PHOSPHODIESTERASE [Mycoplasma pneumoniae M129] Length=197 Score E Sequences producing significant alignments: (Bits) Value gi|13277519|ref|NP_077807.1| acyl carrier protein phosphodiestera... 323 5e-116 >gi|13277519|ref|NP_077807.1| acyl carrier protein phosphodiesterase [Mycoplasma genitalium G-37] Length=197 Score = 323 bits (827), Expect = 5e-116, Method: Compositional matrix adjust. Identities = 151/197 (77%), Positives = 173/197 (88%), Gaps = 0/197 (0%) Query 1 MKKVIIIDASVSPSGSYTHLLLERFLATFQAKNKDVELSTWNLNELPVGQISYNTQNAGT 60 MKKVII+DASV+PSGSYTHLLL+RFL T++ +N VE WNLNELPVG+ISYNTQNA Sbjct 1 MKKVIIVDASVTPSGSYTHLLLDRFLQTYKKQNSSVEFIDWNLNELPVGKISYNTQNASN 60 Query 61 FFSVENSDKYIDALKAAHGVIILAPMTNFNYPATLKNFIDHVFVANKTFKDKYVTKGASS 120 FFS ENSD YIDALK A+G++ILAPMTNFNYPA+LKNFIDHVFVANKTF+DKYVTKGAS Sbjct 61 FFSFENSDYYIDALKTAYGIVILAPMTNFNYPASLKNFIDHVFVANKTFQDKYVTKGASK 120 Query 121 GMLGNLKVVVLGSQGAPLGWYPWGDHVNSLRGLFGFAGVASFASVIIDGTKLLYKDKSKS 180 G+L NLKVVVL SQGAPLGWYPW DHV++L+GLFGFAGV F SV+ID TK+LYKDK+K Sbjct 121 GLLTNLKVVVLASQGAPLGWYPWADHVSNLKGLFGFAGVTHFESVLIDDTKILYKDKNKQ 180 Query 181 EVVDMFAKQVDAIANEF 197 EVVD+FA +VD +AN F Sbjct 181 EVVDLFAHKVDQVANNF 197 Lambda K H a alpha 0.318 0.134 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 18862035 Query= gi|13508219|ref|NP_110168.1| valyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=838 Score E Sequences producing significant alignments: (Bits) Value gi|12045191|ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycopl... 1153 0.0 gi|12045204|ref|NP_073015.1| isoleucyl-tRNA synthetase (ileS) [My... 150 4e-39 gi|12045122|ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycop... 67.8 3e-13 >gi|12045191|ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycoplasma genitalium G-37] Length=837 Score = 1153 bits (2982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/837 (66%), Positives = 672/837 (80%), Gaps = 1/837 (0%) Query 1 MDKQFSFQGQYDFKTVSTGLYDSWSSASFFKPQKNKVPFTAILPPPNLTGTLHIGHAFEV 60 M +FSFQ YDF VS GLY+ W++A FFKP+ FTAILPPPNLTGTLHIGHAFEV Sbjct 1 MKDKFSFQKNYDFNLVSDGLYEIWNNAGFFKPKDKNNSFTAILPPPNLTGTLHIGHAFEV 60 Query 61 SITDQIMRFKRLRGYGVNWIPGFDHAGIATQTKYEKLARETNPEYFQAPRKQKVKMIMDW 120 SITDQIMRFK+++G+ +NWIPGFDHAGIATQTKYEK+A + N +YF A +K +MIM+W Sbjct 61 SITDQIMRFKKMQGFSINWIPGFDHAGIATQTKYEKIALKENQKYFDADDDKKSEMIMNW 120 Query 121 ALTQGDTIQSQIKSLGASLNWNQVNFTLSKKASQIVNDSFIQLFEQGFIYQAETLVNWDT 180 AL Q + I++Q+KSLG LNW++ FTLS++A++IVN+ F L+E GFIYQA TLVNWDT Sbjct 121 ALNQSEIIKNQLKSLGVCLNWSETKFTLSEQANKIVNNCFKNLYENGFIYQAYTLVNWDT 180 Query 181 KLNTAISNIEVINKPVDQQLYYIAYKLANNPKKRLVVATTRPETIFVDVCLFVHPKDKHY 240 KLNTAISNIEVINKPV+Q L+Y+ YKLAN+ K+ L+VATTRPETIF DVCL V+PKDK Y Sbjct 181 KLNTAISNIEVINKPVNQHLHYVVYKLANDSKQELIVATTRPETIFADVCLLVNPKDKRY 240 Query 241 HSFVKQKVVNPLTGALMPVFTDSYVDKKFGTGVLKCTPAHDFNDFALNEKYRLPFVSCID 300 +F + VVNPLTG +PV TDSYVD KFGTG+LKCTPAHDFND+ +N KY+ F+SCID Sbjct 241 TNFWNKLVVNPLTGKQIPVVTDSYVDIKFGTGILKCTPAHDFNDYEINTKYKFDFLSCID 300 Query 301 HNGLLNEHAKQFTGLTVSAARQQVVEFLQTQKLLVKTMPLTSNVGFSERSDTVVEPLLSK 360 NG+LN++A +F GL+V AR ++V++L+ KLLVK++PLTSNVGFSERS TVVEP+LSK Sbjct 301 SNGILNQNASKFQGLSVLQARNKIVKWLEKNKLLVKSIPLTSNVGFSERSGTVVEPMLSK 360 Query 361 QWFVDLPKLKKALAIKKYPELIPKRFNKQVTRWLSQLKPWCISRQLIWGHPIPVWTHKQS 420 QWFVDLPKLK L +KKYP+ IPKRFNKQV+ WL++LKPWCISRQLIWGH IPVW + Sbjct 361 QWFVDLPKLKDHLYLKKYPDFIPKRFNKQVSNWLNKLKPWCISRQLIWGHKIPVWFENNT 420 Query 421 GALHVGSTAPTDKQNYTQSTDVLDTWFSSSLWPLICLDWHKNKHFVPTDLLVTGYDILFF 480 G + VG + QNYT+S DVLDTWFSSSLWPLICL+W ++ F T+LLVTGYDILFF Sbjct 421 GEIVVGEKPSKNLQNYTRSKDVLDTWFSSSLWPLICLNWEQDDSFHETELLVTGYDILFF 480 Query 481 WVLRMTFNSYFQTKQLPFKQVLIHGLVRDAQNRKMSKSLNNGINPMDLIRDYGADATRLF 540 WVLRM FNS+F+TK+LPFK VLIHGLVRD QNRKMSKSLNNGI+P+DLIR+YGADA RLF Sbjct 481 WVLRMLFNSFFETKKLPFKTVLIHGLVRDEQNRKMSKSLNNGIDPVDLIRNYGADAVRLF 540 Query 541 LTSNHTPGDDLIFNEQKLKSAANFLNKLWNVTKYVLQLGEQAKTVPSTHLPSTLSERWIW 600 L SNHTPGDDLIF+EQK+KSA NFLNKLWNVTK+V+QL E + + +LSE WI Sbjct 541 LCSNHTPGDDLIFSEQKIKSAWNFLNKLWNVTKFVIQL-ENDQEISYDLDKLSLSETWIL 599 Query 601 AKLKQLIVQTTKLLDKYQLALANQALVNFIWNDFCNTFIETIKQEDTALLPQLYTTAKTV 660 AKL ++I + TKLLDK+QLALANQ LV F+W+DFCNTFIE IK+E L PQL+ TAK+V Sbjct 600 AKLDKVIQKITKLLDKFQLALANQILVKFVWDDFCNTFIEAIKKEPNQLKPQLFYTAKSV 659 Query 661 LSTAVVMLSTVTPFLAERIYQQFHSGSVMQASWPTAKAVKPPKLFADVVEAVSSLRHYKA 720 LS ++LS PFL+ERIYQQF++ SVMQA+WP A +K PKLF V+ A++ LR+Y+ Sbjct 660 LSNIAILLSITVPFLSERIYQQFNNKSVMQATWPLATKIKIPKLFDLVLAAINDLRNYRK 719 Query 721 NNQLVANQNLAVVLSGKAAPVVQNYFHFNWVDLRIEVNKTPGFQIKIVDNAANNLAHLEK 780 L + Q L V+LSGK A V+ YF+F+W++L+IE NK F+ +IVD+ L L+K Sbjct 720 QYMLNSQQKLVVILSGKNAVDVKQYFNFSWIELKIETNKKVSFKYQIVDDTTQRLKSLQK 779 Query 781 QRSFYLAEVQRSQAITTNPAFLKKAPPHKVKAELLKLEEYQKKLAEVNHLIAKLTKA 837 Q++F+ +EV+RSQAI N +FL+KAP KVK+E LKLEEYQKKL E N LIAKLTKA Sbjct 780 QQAFFESEVKRSQAIVKNKSFLEKAPKEKVKSEFLKLEEYQKKLTETNQLIAKLTKA 836 >gi|12045204|ref|NP_073015.1| isoleucyl-tRNA synthetase (ileS) [Mycoplasma genitalium G-37] Length=895 Score = 150 bits (379), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 187/807 (23%), Positives = 317/807 (39%), Gaps = 112/807 (14%) Query 6 SFQGQYDFKTVSTGLYDSWSSASFFKPQK--NKVPFTAIL--PPPNLTGTLHIGHAFEVS 61 SF Q + T +D W F+ K NK IL PP G++H+GHA Sbjct 13 SFAMQANLSTSEKNFHDFWKDKKVFQKLKKQNKGKQIKILHDGPPYANGSIHVGHALNKI 72 Query 62 ITDQIMRFKRLRGYGVNWIPGFDHAGIATQTKYEKLARETNPEYFQAPRKQKVKMIMDWA 121 + D I+R GY V +IPG+D G+ + ++++ Y +K K+ +A Sbjct 73 LKDFILRSWLYEGYDVVFIPGWDCHGLPIE---HAVSKKNPSSYSNLSTVEKRKLCHQFA 129 Query 122 LTQGDTIQSQIKSLGASLNWNQVNFTLSKKASQIVNDSFIQLFEQGFIYQAETLVNWDTK 181 L+Q + Q + LG ++ +T+ + + F+Q ++G I+Q W Sbjct 130 LSQIAVQKEQFQRLGLLNDFQNCYYTIDESFQFKELELFLQAIKKGLIFQDLKPTYWSPI 189 Query 182 LNTAISNIEVINKPVDQQLYYIAYKLAN----NPKKRLVVATTRPETIFVDVCLFVHPK- 236 T+++ E+ K V+ Y+ +K++ + L+V TT P T+ + + +HP Sbjct 190 SRTSLAEAEIEYKEVNSIALYLTFKVSKSDFLDENANLLVWTTTPWTLPTNQAIAIHPDF 249 Query 237 DKHYHSFVKQKVV----------NPLT-------------------------GALMPVFT 261 D + +QK V N L ++PV Sbjct 250 DYLLFEYNQQKFVILEKLFEVFTNKLNWTNAIKLKKFKGSNLKNSSYSHCFYNKVLPVLM 309 Query 262 DSYVDKKFGTGVLKCTPAHDFNDFALNEKYRLPFV-SCIDHNGLLNE--HAKQFTGLTVS 318 +V GTG++ +PA +DF L +K ++ V ID G+ N + K+ Sbjct 310 GIHVVDNEGTGIVHSSPAFGIDDFYLCQKNKIKEVLISIDEKGVFNNLLNDKELENCFYL 369 Query 319 AARQQVVEFLQTQKLLVKTMPLTSNVGFSERSDTVVEPLLSKQWFVDLPKLKKALAIK-K 377 A ++ L+ + + ++ RS T V SKQ F+ +KK L + Sbjct 370 KANDLIINRLKQNNSFIFSEVISHREPHDWRSKTPVIYRASKQLFIKTKSIKKQLKKQIN 429 Query 378 YPELIPKRFNKQVTRWLSQLKPWCISRQLIWGHPIPVWTHKQSGALHVGSTAPTDKQ--- 434 + + ++ L Q WCISRQ +WG PIP+ L + T KQ Sbjct 430 QVNFLNSKNQLRLKEMLLQRDEWCISRQRVWGLPIPIVYANNKPLLDFSTIQYTIKQLKK 489 Query 435 ------------------------NYTQSTDVLDTWF-SSSLWPLICLDWHKNKHFVPTD 469 Y + D LD WF S S + ++ + NK+ D Sbjct 490 HGIDSWFEKDVTCFLKPDKTKKWVKYHKEIDTLDVWFDSGSSYNVLEI----NKYGSIAD 545 Query 470 LLVTGYDILFFWVLRMTFNSYFQTKQLPFKQVLIHGLVRDAQNRKMSKSLNNGINPMDLI 529 L + G D W + Q +PFK ++ HG D KMSKSL N ++P+ + Sbjct 546 LYIEGSDQYRGWFNSSSNCGIIQNDLIPFKSLVSHGFTLDENGNKMSKSLGNIVDPLKIC 605 Query 530 RDYGADATRLFLTSNHTPGDDLIFNEQKLKSAANFLNKLWN-VTKYVLQLGEQAKTVPST 588 YGAD RL++ + D+ I LK A ++ N + +++L Sbjct 606 DQYGADILRLWVANTDWQIDNKI-GVNILKQVAEQYRRIRNSLLRFILGNINGFNFTSMD 664 Query 589 HLPSTLSERWIWAKLKQLIVQTTKLLDKYQLALANQALVNFI-WNDFCNTFIETIKQEDT 647 +L ++ + K L+ Q K L+KY + + F+ W + + E IK DT Sbjct 665 DYKFSLEDKIVIHKTNSLVEQIEKFLEKYNFLGCLKVINKFVLW--LSSWYFEIIK--DT 720 Query 648 ALLPQLYTTAKT-------------VLSTAVVMLSTVTPFLAERIYQQFHSG----SVMQ 690 LY AK + + + L+ P AE ++ + SV Sbjct 721 -----LYCDAKNNPNRLAKQAVLNYIFTQLISFLNIFIPHTAEDAWKNYSFNKKPISVNL 775 Query 691 ASWPTAKAVKPPKLFADVVEAVSSLRH 717 + PT V K ++ + +S+++ Sbjct 776 FTKPTVFKVANSKNLGNIYKTFTSIKN 802 >gi|12045122|ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycoplasma genitalium G-37] Length=792 Score = 67.8 bits (164), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 55/242 (23%) Query 380 ELIPKRFNKQVTRWLSQLKPWCISRQLIWGHPIPVWTHKQSGALHVGSTAPT-------- 431 ELI + K T + +L+ W SRQ WG P P+ ++ H+ P Sbjct 388 ELISQNKAKLTTVY--KLRDWIFSRQRYWGEPFPI-IFDENNTPHLVEQLPVELPLLENY 444 Query 432 ---------------------DKQNYTQSTDVLDTWFSSSLWPLICLDWHKNKHF----- 465 D +Y + T+ + W S + L L KN +F Sbjct 445 KPDGSGNSPLMRNQAWVNIVKDNIHYQRETNTMPQWAGSCWYYLGYLMLIKNPNFWPIDS 504 Query 466 ----------VPTDLLVTGYD-----ILF--FWVLRMTFNSYFQTKQLPFKQVLIHGLVR 508 +P DL V G + +L+ FW + F+ + + PF++++ G+V Sbjct 505 KEAKKLFDQYLPVDLYVGGAEHAVLHLLYARFW-HKFLFDKKLVSTKEPFQKLINQGMVL 563 Query 509 DAQNRKMSKSLNNGINPMDLIRDYGADATRLFLTSNHTPGDDLIFNEQKLKSAANFLNKL 568 +KMSKS N INP L+ +GADA RL+L L +N++ L +L+++ Sbjct 564 GPDGKKMSKSKGNTINPTPLVDSHGADALRLYLMFMGPISASLTWNDEGLNGMRRWLDRV 623 Query 569 WN 570 +N Sbjct 624 YN 625 Lambda K H a alpha 0.320 0.133 0.403 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 105014520 Query= gi|13508220|ref|NP_110169.1| GTP binding, era like [Mycoplasma pneumoniae M129] Length=193 Score E Sequences producing significant alignments: (Bits) Value gi|12045192|ref|NP_073003.1| conserved hypothetical GTP-binding p... 300 4e-107 >gi|12045192|ref|NP_073003.1| conserved hypothetical GTP-binding protein [Mycoplasma genitalium G-37] Length=191 Score = 300 bits (768), Expect = 4e-107, Method: Compositional matrix adjust. Identities = 143/189 (76%), Positives = 168/189 (89%), Gaps = 0/189 (0%) Query 1 MEARFLKSASDLESCPQDSVKEVCFMGRSNVGKSSLINAFFQKKLAKTSATPGRTQLLNF 60 M+A FLKSASDL+ CPQD++ E+CFMGRSNVGKSSLINAFF+KKLAKTSATPGRTQLLN+ Sbjct 1 MDAHFLKSASDLKDCPQDNIPEICFMGRSNVGKSSLINAFFKKKLAKTSATPGRTQLLNY 60 Query 61 FEYNRKRFVDLPGYGFAKLSKVQKEAITNLLTQFLNFRQNLTGVVLVIDSGVVTVQDQEV 120 FEY KRFVDLPGYGFAK++K +K+ ITNLLTQFLNFR NL GVVL++DSGVVTVQDQEV Sbjct 61 FEYKDKRFVDLPGYGFAKINKNKKDFITNLLTQFLNFRSNLVGVVLIVDSGVVTVQDQEV 120 Query 121 VKTILQTGLNFLVIANKFDKLNQSERFHTQNKLAHFLKVNPNKCLFVSAKTGYNLQVMHK 180 VK ILQTGLNFL++ANKFDKLNQSER+ + +A+FLKVN +KC+F S KT +NL ++HK Sbjct 121 VKIILQTGLNFLIVANKFDKLNQSERYFSLKNIANFLKVNFDKCVFASTKTHHNLALVHK 180 Query 181 QIFELFKAD 189 +IFELF D Sbjct 181 KIFELFVED 189 Lambda K H a alpha 0.322 0.135 0.380 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 18286095 Query= gi|13508221|ref|NP_110170.1| hypothetical protein MPN482 [Mycoplasma pneumoniae M129] Length=64 Score E Sequences producing significant alignments: (Bits) Value gi|12045193|ref|NP_073004.1| M. genitalium predicted coding regio... 124 2e-41 >gi|12045193|ref|NP_073004.1| M. genitalium predicted coding region MG335.1 [Mycoplasma genitalium G-37] Length=73 Score = 124 bits (310), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 60/64 (94%), Positives = 64/64 (100%), Gaps = 0/64 (0%) Query 1 MGIPLSLLVGVIIGYFISIKIFKKQIRDNPPITENQIKAMYAKMGRKLSETQVKEIMRSI 60 +GIPLSLLVG+I+GYFISIKIFKKQ+RDNPPITENQIKAMYAKMGRKLSETQVKEIMRSI Sbjct 10 LGIPLSLLVGMILGYFISIKIFKKQMRDNPPITENQIKAMYAKMGRKLSETQVKEIMRSI 69 Query 61 KNQK 64 KNQK Sbjct 70 KNQK 73 Lambda K H a alpha 0.322 0.139 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4438140 Query= gi|13508222|ref|NP_110171.1| bifunctional threonine dehydrogenase; galactosyltransferase [Mycoplasma pneumoniae M129] Length=341 Score E Sequences producing significant alignments: (Bits) Value gi|12045194|ref|NP_073005.1| hypothetical protein MG335.2 [Mycopl... 395 5e-140 >gi|12045194|ref|NP_073005.1| hypothetical protein MG335.2 [Mycoplasma genitalium G-37] Length=341 Score = 395 bits (1015), Expect = 5e-140, Method: Compositional matrix adjust. Identities = 190/339 (56%), Positives = 263/339 (78%), Gaps = 0/339 (0%) Query 1 MNKLISILVPCYQSQPFLDRFFKSLLKQDWNGVKVIFFNDNKPDPTYEILKQFQQAHPQL 60 M+KL+SILVPCY+S+PFL RFF SLLKQD N K+IFFNDN D TYE+L++F++ H L Sbjct 1 MDKLVSILVPCYKSKPFLKRFFNSLLKQDLNQAKIIFFNDNVADETYEVLQKFKKEHNNL 60 Query 61 AIEVHCGEKNVGVGGSRDQLINYVDTPYFYFVDPDDEFSDPNCFKAIVETIQGENFDIAV 120 AIEV+C ++N G+G RD+L+N V TPYFYF+DPDD F++ N K IVE+I+ E+FD+ V Sbjct 61 AIEVYCDKQNEGIGKVRDKLVNLVTTPYFYFIDPDDCFNNKNVIKEIVESIKKEDFDLGV 120 Query 121 LNSIVYLQMLKNDFLIKHIPLKNIFQGKVKLNPDNTVNHLHYIQNNDQYIWNIVINTAFF 180 L S+VYL LK+DF+IK +PLK IFQG+VKL +N VN L+YI+NNDQYIWNIVINT FF Sbjct 121 LKSMVYLCFLKHDFIIKFLPLKGIFQGRVKLINNNNVNKLNYIKNNDQYIWNIVINTDFF 180 Query 181 KALDLQFVNRFIEDIAVWFPIMFKAQKVLWIDVNGVNYYLRPNSASTQKNSIKLLSFIEA 240 + L+L F +R EDI +W+P+ F +QK+++IDV G NY++R +S ST ++ + L+ I+ Sbjct 181 RKLNLTFESRLFEDIPIWYPMFFSSQKIVFIDVIGTNYFIRNDSLSTTISAPRYLNLIQC 240 Query 241 YERLYFHLKKVGKLADFIDPNNKIESRFWRRQAFIWFSFINVSWMKAEFEQTKSVLQKLF 300 YE+LY +L + G LA FIDPN+KIE+RFWRRQ F+WF+ + + K F ++K +L+KLF Sbjct 241 YEKLYVNLSQNGSLASFIDPNHKIEARFWRRQMFVWFALFSFEYFKKNFSESKKILEKLF 300 Query 301 DFMEANGIYDRVFTNKHHGIYLLWVNRLKHFKKLVQAQP 339 F+E NG+Y+RVF K+ GIY +WV RLK+FK +++++ Sbjct 301 VFLEKNGVYERVFQTKNQGIYYIWVQRLKYFKHVLESKS 339 Lambda K H a alpha 0.326 0.141 0.444 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 38222550 Query= gi|13508223|ref|NP_110172.1| hypothetical protein MPN484 [Mycoplasma pneumoniae M129] Length=103 ***** No hits found ***** Lambda K H a alpha 0.311 0.130 0.333 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6653565 Query= gi|13508224|ref|NP_110173.1| species specific lipoprotein [Mycoplasma pneumoniae M129] Length=316 Score E Sequences producing significant alignments: (Bits) Value gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma ge... 137 8e-38 >gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1271 Score = 137 bits (345), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 150/312 (48%), Gaps = 60/312 (19%) Query 7 VAIRSIVSRAKIAMTDQTPGFKVDPAFVKVKQNNQTDAFYTTQRKLSGGQTNGGSNNSND 66 V ++S +++++ +D GF V F+K+ + + + S + NNS+ Sbjct 386 VMMKSAMTKSQEVTSDNN-GFNVKSEFLKINPSLSSSGSDNSSNTQSFWKQVQALNNSSQ 444 Query 67 KHHYLQDAVRLTSSQAMAAASTGAGSSSGTNVGGSSGGNSVLIPLPRSAALTHTQQQVQQ 126 DAVR+ S+ + A T ++L+ L S+ T QQQ Sbjct 445 TATIF-DAVRMESNSSQAQVVTS----------------NLLVSL--SSKTTQKQQQ--- 482 Query 127 TTSTLQTPVYARGDDGTYALAIDGGDYFLAN---NKRDFTKQADILLYRYLQAKSNNFKE 183 PVY RGDD YA IDGG+YFL N NKR+F KQA++LL R+LQ ++NNF + Sbjct 483 ------KPVYVRGDDAIYAFHIDGGNYFLENSSPNKRNFEKQAEVLLMRFLQGQTNNFSK 536 Query 184 NGVEFSLNLLESGSLFQTWAQTGLTAKLYGALVAMMGSGQGTQVKGSVQGSSRAASVSVQ 243 + V FS++L S S F++WA T KLY AL M+ +G Sbjct 537 DNVSFSVDLFGSNSEFRSWANRNTTLKLYTALTTMLENG--------------------- 575 Query 244 TTQQSRQQSTDTQESEVVKLAKALLKSSADLAKPFTDNPTFKKALTDIQSEYKDYLAAAG 303 S + + +V LAK LLK++ +L++ F +L+ I+S Y+ Y+ AA Sbjct 576 -------TSNNNGQKDVCDLAKKLLKNNTNLSETIKKQQDFNNSLSQIKSSYESYIKAAN 628 Query 304 KLSEFKKDLGEV 315 KL+ F+ DL + Sbjct 629 KLNNFRTDLANI 640 Lambda K H a alpha 0.309 0.124 0.332 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 34944054 Query= gi|13508225|ref|NP_110174.1| hypothetical protein MPN486 [Mycoplasma pneumoniae M129] Length=147 ***** No hits found ***** Lambda K H a alpha 0.323 0.136 0.447 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12216708 Query= gi|13508226|ref|NP_110175.1| bifunctional; nifS-like; also related to tRNA splicing protein spl 1; molecular function: classV pyridoxal-phosphate-dependent transferase; subunit to MPN487 [Mycoplasma pneumoniae M129] Length=408 Score E Sequences producing significant alignments: (Bits) Value gi|12045195|ref|NP_073006.1| nitrogen fixation protein (nifS) [My... 515 0.0 >gi|12045195|ref|NP_073006.1| nitrogen fixation protein (nifS) [Mycoplasma genitalium G-37] Length=408 Score = 515 bits (1327), Expect = 0.0, Method: Compositional matrix adjust. Identities = 252/407 (62%), Positives = 314/407 (77%), Gaps = 0/407 (0%) Query 1 MTKTKFNPYQFRKQFKWFKNNPQWVNFDNAATSIALDTVSQACKEYYELFSVNPHNKTPD 60 M+ KFNP FRK FKWF+NN W+NFDNAATSIALD V++A KEYY+ F VNPHNK P+ Sbjct 1 MSAIKFNPSSFRKNFKWFENNKNWINFDNAATSIALDVVAEASKEYYQYFCVNPHNKNPE 60 Query 61 LNNQIIAIIAETRQLVADWFNVTALEIIFTSSATESINLFAHGLKPWIKPGDEIVLKGDE 120 +N ++IAII ETR L+A +FN EIIFTSSATES+NLFA GL +K DEI+LK DE Sbjct 61 INQKLIAIIEETRDLLAKFFNAKKNEIIFTSSATESLNLFAFGLSSLVKSNDEIILKEDE 120 Query 121 HSANVLPWVALAKQTKARLVWVEKQANQSLEDTFKSLINPKTKVVAITATSNLFGNSIDF 180 H+ANV PWV LAK+ KA+L ++K N+S D F P TK++ ITATSNLFGNSID+ Sbjct 121 HAANVFPWVNLAKENKAKLKIIKKTPNKSWTDAFLKACTPSTKLLVITATSNLFGNSIDY 180 Query 181 AQIADYLKQVNPKAFVAVDAVQTVQHKQIDIAKTQIDFLAFSTHKFYGPTGLGVAYIKKS 240 +I+ +LK+++P +F+ VDAVQ V H +IDI IDFL FSTHKFYGPTGLG+A+IK Sbjct 181 EKISKHLKKISPNSFIVVDAVQAVPHHKIDITSANIDFLTFSTHKFYGPTGLGIAFIKSE 240 Query 241 LQPQLQPLKLGGDIFTQIDPDNTIHFKSTPLKFEAGTPNIMAIYALNKLLRFFKQKFNFA 300 LQ +L+P KLGGDIF +D + I FK P KFEAGT NIMAIYALNK L+F +++FNF+ Sbjct 241 LQSRLKPFKLGGDIFKSLDNNFKIIFKEGPSKFEAGTLNIMAIYALNKQLKFMQKEFNFS 300 Query 301 QMMAYGHQLKQQAYELLNSNPQIVLANHDQDVPIFSFKHRQLATIDLATFLNINKIMVRQ 360 +M+ Y QLK AY+LL+ NP IVLANHDQDVPIF+FKH+ + + DLATFLNI KI+VRQ Sbjct 301 EMVFYSKQLKNLAYQLLSQNPNIVLANHDQDVPIFAFKHKYINSADLATFLNIKKIIVRQ 360 Query 361 GSICVGRYRNKDYFVRVSLMHYNTVKELQYLAKLLATDTKTIIKNVI 407 GSICVG+++NK+ F+RVSL+HYNT +EL YL KLL T +II +I Sbjct 361 GSICVGKFKNKESFLRVSLLHYNTKEELLYLEKLLKTSKNSIINELI 407 Lambda K H a alpha 0.321 0.134 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 47403216 Query= gi|13508227|ref|NP_110176.1| nifU-like, complementing transferase subunit for MPN488 [Mycoplasma pneumoniae M129] Length=140 Score E Sequences producing significant alignments: (Bits) Value gi|12045196|ref|NP_073007.1| hypothetical protein MG337 [Mycoplas... 146 6e-48 >gi|12045196|ref|NP_073007.1| hypothetical protein MG337 [Mycoplasma genitalium G-37] Length=138 Score = 146 bits (368), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 68/138 (49%), Positives = 96/138 (70%), Gaps = 0/138 (0%) Query 1 MDRKIREQIIAIYSNLQHKQDLTQFAHCLTTKADDNCEDFFNLGLQFQNNQLTALGFNGE 60 MD + R +II IYSNL++K+ L F LTT DNCEDFFN+GL N++TA+GF+G+ Sbjct 1 MDIRARTKIIDIYSNLKYKKPLKSFQKILTTSDSDNCEDFFNIGLNIDKNKITAIGFDGD 60 Query 61 GCIISTIASELTLSALEGKTIKEAIVLLEQFMEAVQTGSLSTPLPQALQLLWDFQIDQKR 120 GCIISTIA+EL++ A+E KTI +A +L + + + + + + L+LL + + +KR Sbjct 61 GCIISTIATELSIKAIENKTINQAKKILSDLIATYKDKNSANQVVEELKLLIEMNVTEKR 120 Query 121 LNCLLLTPQNLLQWLKDF 138 L CLLLTP NLLQW K+F Sbjct 121 LQCLLLTPSNLLQWFKNF 138 Lambda K H a alpha 0.322 0.136 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11381838 Query= gi|13508228|ref|NP_110177.1| species specific lipoprotein [Mycoplasma pneumoniae M129] Length=1300 Score E Sequences producing significant alignments: (Bits) Value gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma ge... 1125 0.0 gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma ge... 75.9 2e-15 >gi|12045197|ref|NP_073008.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1271 Score = 1125 bits (2910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 625/1295 (48%), Positives = 850/1295 (66%), Gaps = 125/1295 (10%) Query 1 MGYKLKRWPLVAFTFTGIGLGVVLAACSALNTSNLFPRQNRSKQLIGFTENNIIKPEAVL 60 M ++ KRW L+A F+G+G ++ ACS +NT+NLFP NRS++LIGF++ NII P+ VL Sbjct 1 MAHRFKRWSLIALAFSGVGATAIITACSTINTANLFPTLNRSQKLIGFSDQNIINPDVVL 60 Query 61 KAALAEDNGTETILRVNFGEALKSWYQNNKDRNIATRLTIFSENVEDEHDNLLDQKQQAE 120 K+AL + +G ++ILRV+FG AL+ WYQ N DRNI+ RL IF ENVEDEHDNL+D+K++A+ Sbjct 61 KSALNDGSGVDSILRVSFGSALQKWYQANADRNISNRLKIFEENVEDEHDNLIDEKKRAD 120 Query 121 PINWPIELQKEYDQWGGSESSWKALKLYDRLIADFQSLIFSNIVANVQLTDGSDQFKPTT 180 + WPIE+QKEYDQ+GG++ SWK LKLYDRLI DFQSLIF+NI ANV L + SD TT Sbjct 121 RVKWPIEVQKEYDQFGGNQESWKKLKLYDRLITDFQSLIFNNISANVSLVNSSDTSVATT 180 Query 181 KDNLDSTSNKIKFVNSKPNDPNGEFFANLQAYLFAQWVVEENPLPLTQAFFAYQAPKDGL 240 K+N++ T NK+KF+NS ND NG+FF NLQAYLF+QW++EENP L QA F YQ+P GL Sbjct 181 KENIEKTENKLKFINSNLNDVNGDFFTNLQAYLFSQWLIEENPFLLNQASFNYQSPIAGL 240 Query 241 DSLYDQAAIG-SALQLGYAFPAFREPNNGQSQGKTTFDPTPNSAQNFGDFIKAV-FPEQK 298 S+YD+ AIG S L L Y FPAF++P +S G+T NSA+ F +F K + Sbjct 241 GSIYDENAIGASNLNLSYNFPAFQDP--SESGGQT------NSAKLFEEFDKQLQTANSS 292 Query 299 NGQTQQSNTSSRTGLFDWQTKWNTNGAANKLLVTKSNLRGAFKGVGLATAIIDQYEYLVG 358 + T++R L D++ K+ +A+K+L++K+N+ K V L+ A+IDQY YL+ Sbjct 293 GSSQSSAATNTRNDLLDFENKY----SASKVLISKNNILSVLKTVNLSAAVIDQYHYLLN 348 Query 359 G----SKTSSLPEVKVDSNKSNQNPLDSFFMEGK-DAVAIRSIVSRAKIAMTDQTPGFKV 413 + T++ SN NPLD F V ++S +++++ +D GF V Sbjct 349 NKTELTTTTTTTTTTTGGTSSNLNPLDKFIKSSSATTVMMKSAMTKSQEVTSDNN-GFNV 407 Query 414 NPAFVKVK---QSQQNDTFYQNQRKLSGGQSGDNNSQGKHHYLQDAVRLTSSQAMAAAST 470 F+K+ S +D Q Q+ +N+SQ + DAVR+ S+ + A T Sbjct 408 KSEFLKINPSLSSSGSDNSSNTQSFWKQVQALNNSSQTATIF--DAVRMESNSSQAQVVT 465 Query 471 GADSSSGTNVGGSSGGNSVLIPLPRSAALTHTQQQVQQTTSTLQTPVYARGDDGTYALAI 530 ++L+ L S+ T QQ Q PVY RGDD YA I Sbjct 466 S----------------NLLVSL--SSKTTQKQQ---------QKPVYVRGDDAIYAFHI 498 Query 531 DGGDYFLAN---NKRDFTKQADILLYRYLQAKSNNFKENGVEFSLNLLESGSLFQTWAQT 587 DGG+YFL N NKR+F KQA++LL R+LQ ++NNF ++ V FS++L S S F++WA Sbjct 499 DGGNYFLENSSPNKRNFEKQAEVLLMRFLQGQTNNFSKDNVSFSVDLFGSNSEFRSWANR 558 Query 588 GLTAKLYGALVAMMGSGQGTQVKGSVQGSSRAASVSVQTTQQNRQQSTDTQESEVVKLAK 647 T KLY AL M+ +G T+ N Q+ +V LAK Sbjct 559 NTTLKLYTALTTMLENG---------------------TSNNNGQK-------DVCDLAK 590 Query 648 SLLKSSADLAKPFTDNPTFKKALTDIQSEYKDYLAAAGKLSEFKKDLGEVSGLQQAIIDR 707 LLK++ +L++ F +L+ I+S Y+ Y+ AA KL+ F+ DL + L+QAI+DR Sbjct 591 KLLKNNTNLSETIKKQQDFNNSLSQIKSSYESYIKAANKLNNFRTDLANIEKLEQAIVDR 650 Query 708 ADKYIQLEKQAQKSAIGLGQPLPYQRASDGSYPALEKFFIPEDSAADGKVKASESGSAAL 767 A+ YI+L+K+A++S+IG GQPLPY+RA+DGSYP+L KFF S+ SA Sbjct 651 ANNYIKLQKEAKESSIGWGQPLPYKRANDGSYPSLAKFF----------NNNSDQSSAQT 700 Query 768 VTLKTTDSQKSTNTVKQPDIKPTRENNDKKLKQLTSDVETKASSLITKWGATPQIGSQFS 827 +TLKTT + ++ D +PTRE N++ LK LT++VE KA L+ KW AT SQ+S Sbjct 701 LTLKTTAAAITS------DNEPTREKNNQTLKTLTTEVENKAKELVEKWKATTYSSSQYS 754 Query 828 EIVSLK-SKDNKPQTNMILALLSDVGIKWTKILNSFKEWFFTNTNDFKNNYDSEKKELKG 886 EI++LK S+ N ++IL+LL+D GI+ + N FK W+F NTN F NN+D+ KELKG Sbjct 755 EIITLKSSQLNDLDLDLILSLLTDSGIRTGTVANIFKNWYFKNTNSFTNNFDTSNKELKG 814 Query 887 NEYKDFNDLVKQTLYLRSWQRLTSKEKFGYYKELGSVKAQAAQSGMVSLSSSAAVANAVA 946 E+ DFNDLVKQ LY+RSWQ LTSKE+FGYYK+LGSV S S+ + N A Sbjct 815 -EFSDFNDLVKQALYIRSWQNLTSKERFGYYKDLGSVN---------STSTMLQMQNKAA 864 Query 947 SSGMQKSGDQTLLELGKKAFESELEASSSDGQYKYLRFLSTLMWLVKDGAKNYKRLLQQA 1006 S S +QTLL+L KKAFE ELE + D +YKY+RFL LMWLVK+GA+NYK LLQQA Sbjct 865 QSHTSSSVNQTLLDLAKKAFEKELEDPNQDAEYKYMRFLQALMWLVKNGAQNYKNLLQQA 924 Query 1007 ITVGTRAFVSWTVSYDDTATASAAAAKAQVAVLKTAQATNTQSDNPFNKFVQNPDYVQGS 1066 I +GTRAFVSWTV YD +A+ + T +T++ ++NPFN+F+QNP+Y QGS Sbjct 925 IPIGTRAFVSWTVGYDKNPSATVSQK--------TKSSTSSANENPFNRFLQNPNYTQGS 976 Query 1067 ETNWFNDKSTPIKPDSLLESESTYNFTAEPFDDKTKSQKRSTGGTTNEKHFFGFNGLTIN 1126 E NWFNDK TPI+PDSLLESE+TY FT EPF++ +S G++++K+F+GFNGLTIN Sbjct 977 EINWFNDKQTPIQPDSLLESENTYRFTDEPFNNSVALSNKSQ-GSSDKKYFYGFNGLTIN 1035 Query 1127 SPQSVSTASAGLTEQIFNNFGQLVTSSDKSGALSQYKDKATLKRLIQNTNSDAELNAFGE 1186 S QS+STASAGLT+Q+FNN+GQL+T++DK+GALSQYKDK TL LI T+SDAELNAFGE Sbjct 1036 SNQSISTASAGLTQQLFNNYGQLITATDKAGALSQYKDKFTLWSLINKTSSDAELNAFGE 1095 Query 1187 VLHRAVNVDTSNLGRFNSSGEPLISFDNKKKFLVDVVDKLDDVYFNKFEGYVGQTKVKMS 1246 +LHR+VNVDT+NL RFNS GEPLISFDNKKKFL++VVD+LDD+YF+KFEGYVG +K + Sbjct 1096 LLHRSVNVDTNNLSRFNSRGEPLISFDNKKKFLLNVVDRLDDLYFHKFEGYVGLSKAANT 1155 Query 1247 DSSSSSQGTKTIRKPKPHHSPRTRVSRLWAMSFRL 1281 D S+++G KT++ P T S + +S+ + Sbjct 1156 D-GSNTEGYKTVQTV-----PLTNDSSIQTLSYVI 1184 >gi|12045165|ref|NP_072976.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=1225 Score = 75.9 bits (185), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/268 (26%), Positives = 124/268 (46%), Gaps = 13/268 (5%) Query 7 RWPLVAFTFTGIGLGVVLAACSALNTSNLFPRQNRSKQLIGFTENNIIKPEAVLKAALAE 66 +WPL+ + + LG+V AC+ N+ + +N + FT+ N A L AL Sbjct 9 KWPLL-LSSIAVSLGIVAVACAQPNSRTI---ENLFRPSSAFTDKNDGSINATLYKALEN 64 Query 67 DNGTETILRVNFGEALKSWYQNNKDRNIATRLTIFSENVEDEHDNLLDQKQQAEPINWPI 126 G L + L+++Y+ N D +I L F+ + ++ N + ++ + Sbjct 65 REGLTQYLTMRLAPVLRNFYEENVDDDIKRNLRTFNTDTDNSFVNQEQNLRNQYRGDYLV 124 Query 127 ELQKE-YDQWGGSESSWKALKLYDRLIADFQSLIFS-NIVANVQLTDG--SDQFKPTTKD 182 LQ + D GG++++WK + ++++ DF + +F+ N V V + G S K ++ Sbjct 125 RLQTDILDNTGGNQANWKLRDVNNKIVDDFINKLFTKNFVEYVDKSVGVLSTPLKGLIEN 184 Query 183 NLDSTSNKI--KFV--NSKPNDPNGEFFANLQAYLFAQWVVEENPLPLTQAFFAYQAPKD 238 + + KI KFV N + N +A +Q L Q+V ENP +++ F + P D Sbjct 185 QSNWNNIKIQAKFVDKNKRLRINNDAVYAAIQDKLLDQFVTNENPNLVSRVVFTNETPND 244 Query 239 GLDSLYDQAAIGSALQLGYAFPAFREPN 266 G D+ ++ I S Y F F + N Sbjct 245 GFDNYFNPDLIKSPTP-SYQFQVFNKYN 271 Score = 67.0 bits (162), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 155/660 (23%), Positives = 268/660 (41%), Gaps = 112/660 (17%) Query 639 ESEVVKLAKSLLKSSADLAKPFTDNPTFKK---ALTDIQSEYKDYLAAAGKLSEFKKDLG 695 ++ V+ L +L K F P FKK ++ +++E KD + + + F + Sbjct 518 KNRVLFLFNALFKLVDSKESNFLSFPQFKKFSDSIITVKNELKDLVESQYQQIVFNEVAT 577 Query 696 EVSGLQQAIIDRADKYIQLEKQAQKSAIGLGQPLPYQRASD-GSYPALEKFFIPEDSAAD 754 + + + +R +I E+ Q GL LPY++ S G Y L ++ Sbjct 578 AENKVALKLAERNQPFIDNERNKQIWMNGLAAVLPYEQDSKTGHYNELGIYY----KDII 633 Query 755 GKVKASESGSAALVTLKTTDSQKSTNTVKQPDIKPTRENNDKKLKQLTSDVETKASSLIT 814 KV ++ S S + ++D + I +EN K + V+ S+I Sbjct 634 DKVSSNTSNSNSNSNSSSSDP------FSKKIIDKLKENKKKVEAAVKKHVDELKVSVI- 686 Query 815 KWGATPQIGSQFSEIVSLKSK--DNKPQTNMILALLSDVGIKWTKILNSFKEWFFTNTND 872 +PQ +S+I+ + +K + T++ L L + + ++ N+ + +F N + Sbjct 687 ---PSPQ----YSQIILVDTKLSSDPRNTSLALNLALNAVLSSDELQNTIRRDYFVNDDQ 739 Query 873 FKNNYDSEKKELKGNEYKDFNDLVKQTLYLRSWQRLTSKE----KFGYYKELGSVKAQAA 928 FK D +K L ++W L ++ K+ Y +L + QA Sbjct 740 FKQAIDLDK------------------LTFKNWNSLNNENWNIFKYTYLFDL--FQKQAN 779 Query 929 QSGMVSLSSSAAVANAVASSGMQKSGDQTLLELGKKAFESELEASSSDGQYKYLRFLSTL 988 S + + ++ N +G+ S +L E L+ S+ Y +L T+ Sbjct 780 PSIFGNGVNESSTDNKPKINGVLDSLYNSL------NLEERLD---SNDLINYYSYLYTV 830 Query 989 MWLVKDGAKNYKRLLQQAITVGTRAFVSWTVSYDD--TATASAAAAKAQVAVLKTAQATN 1046 WL+KD KN K+ LQ ++ T +F+ W+++ D TAS A + + + A N Sbjct 831 QWLLKDNLKNLKQDLQAKLSRTTNSFLVWSLASDKDRNNTASQAMSVSSSKSVLVKMANN 890 Query 1047 --TQSDNPFNK-FVQNPDYVQGSET-NWFNDKSTPIKPDSLLESESTYNFTAEPFDDKTK 1102 +Q++ F K QNP+YV GS NW N+K TP + + S Y +T T Sbjct 891 VASQTNQDFTKQEQQNPNYVFGSSAYNWTNNK-TPTVNSAANDISSLY-YTKNNGSSSTS 948 Query 1103 --SQKRSTGGTTNEKHFFGFNGLTINSPQSVSTASAGLTEQIFNN-FGQLVTSSDKS--- 1156 ++S T N++ FGF+G+ N T+S L + + N F V+ S+KS Sbjct 949 LTLMQKSAQQTNNQQRRFGFHGIVTN------TSSNNLPDAVRNRLFTSFVSQSEKSSSN 1002 Query 1157 --------------------GALSQYKDKATLKRLIQNTNSDAELNAFGEVLHRAVNVDT 1196 GAL + L I N + AE +A L +N++ Sbjct 1003 GGQAQLQSTQSSGSNETIYKGALFSFGSLTKLIETIDNIPTQAEFDALYNHLTSNLNINV 1062 Query 1197 SNLGRFNSSGEP---LISFDNKKKFLVDVV-----------DKLDDVYFNKFEGYVGQTK 1242 + + R S E L +F N V +DV F++FEGY+G K Sbjct 1063 TGVDRSKSLQEQKTNLKNFANSNFNNTQTVQLKQAQSKTNNSNFNDV-FSRFEGYIGTNK 1121 Lambda K H a alpha 0.311 0.127 0.354 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 166667775 Query= gi|13508229|ref|NP_110178.1| recombination protein RecA [Mycoplasma pneumoniae M129] Length=336 Score E Sequences producing significant alignments: (Bits) Value gi|12045198|ref|NP_073009.1| recA protein (recA) [Mycoplasma geni... 551 0.0 >gi|12045198|ref|NP_073009.1| recA protein (recA) [Mycoplasma genitalium G-37] Length=340 Score = 551 bits (1421), Expect = 0.0, Method: Compositional matrix adjust. Identities = 259/329 (79%), Positives = 307/329 (93%), Gaps = 1/329 (0%) Query 1 MVQKEMINKKISQDNS-FIQNNNLADFDFLDAKKNSEIKTVSTGSLHLDEALGTGGLPLG 59 M QKE+INKK +Q NS FI++NNL FDF DAKKNSEI+T+STGSL+LDEALG+GGLPLG Sbjct 1 MAQKEIINKKNTQKNSSFIESNNLTSFDFFDAKKNSEIETISTGSLNLDEALGSGGLPLG 60 Query 60 RIVELYGNESSGKTTVALHAVASFQKAGKVACYIDAEGALDLSYAKAIGIDLGKLLVAHP 119 RIVELYGNESSGKTT+AL+AVASFQKAGK ACYIDAEGALDL+YAK+IGIDL KLL+AHP Sbjct 61 RIVELYGNESSGKTTIALNAVASFQKAGKTACYIDAEGALDLAYAKSIGIDLNKLLIAHP 120 Query 120 KHGENAFALMESLIKTNKVALIVVDSVAALIPKQELEGNMDDQTIGLHARMMSKGLRRVQ 179 +HGENAFAL+ESLIKTNK++LIV+DSVAALIPKQELEG +++QTIGLHARMMSKGLRR+Q Sbjct 121 RHGENAFALIESLIKTNKISLIVIDSVAALIPKQELEGTIEEQTIGLHARMMSKGLRRIQ 180 Query 180 SLLPESDTCLLFINQLREKPGVMFGNGEVTTGGRALKFYASMRMEAKRSELLKDRFGNYV 239 S+LP+S TC+LFINQLREKPGVMFGN EVTTGG+AL+FY+S+RMEAKR ELLKD+F NYV Sbjct 181 SILPDSKTCVLFINQLREKPGVMFGNNEVTTGGKALRFYSSLRMEAKRVELLKDKFNNYV 240 Query 240 GIKSKLTVSKNKVARPFGVAFLEIMFNRGIVYEHEVIELALKHNVVVRSDNAYSFKSQNI 299 GIK+K+ VSKNK+A+PFGVA LEIMFNRG V+EHEVI+LALK NVVVR+ N+YSF +++I Sbjct 241 GIKTKVMVSKNKIAKPFGVAILEIMFNRGFVHEHEVIDLALKFNVVVRAGNSYSFNNESI 300 Query 300 AIGKEKLFSVLAEKPELFEQIKQLTIKQI 328 A+GKEKL +VL+EKP LFEQIK+LT++Q+ Sbjct 301 AVGKEKLLNVLSEKPALFEQIKELTVQQL 329 Lambda K H a alpha 0.317 0.134 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37514725 Query= gi|13508230|ref|NP_110179.1| membrane nuclease [Mycoplasma pneumoniae M129] Length=474 ***** No hits found ***** Lambda K H a alpha 0.308 0.125 0.350 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56045200 Query= gi|13508231|ref|NP_110180.1| similar to D-ARABINO-6-HEXULOSE 3-PHOSPHATE isomerase from E.coli [Mycoplasma pneumoniae M129] Length=305 ***** No hits found ***** Lambda K H a alpha 0.321 0.134 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33381515 Query= gi|13508232|ref|NP_110181.1| 3-hexulose-6- phosphate synthase [Mycoplasma pneumoniae M129] Length=218 ***** No hits found ***** Lambda K H a alpha 0.320 0.134 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21668651 Query= gi|13508233|ref|NP_110182.1| similar to phosphotransferase protein II, component A, for pentitol, SGAT homolog [Mycoplasma pneumoniae M129] Length=159 ***** No hits found ***** Lambda K H a alpha 0.323 0.135 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13770535 Query= gi|13508234|ref|NP_110183.1| similar to PTS system: EIIB [Mycoplasma pneumoniae M129] Length=95 ***** No hits found ***** Lambda K H a alpha 0.314 0.129 0.342 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5636958 Query= gi|13508235|ref|NP_110184.1| similar to phosphotransferase protein for pentitol from E.coli, SGAT homolog [Mycoplasma pneumoniae M129] Length=660 ***** No hits found ***** Lambda K H a alpha 0.325 0.141 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 81260680 Query= gi|13508236|ref|NP_110185.1| similar to PHOSPHOTRIESTERASE HOMOLOGY PROTEIN [Mycoplasma pneumoniae M129] Length=143 ***** No hits found ***** Lambda K H a alpha 0.318 0.135 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11634960 Query= gi|13508237|ref|NP_110186.1| L-ribulose-5-phosphate 4-epimerase [Mycoplasma pneumoniae M129] Length=242 ***** No hits found ***** Lambda K H a alpha 0.318 0.132 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24884958 Query= gi|13508238|ref|NP_110187.1| hypothetical protein MPN499 [Mycoplasma pneumoniae M129] Length=163 ***** No hits found ***** Lambda K H a alpha 0.324 0.139 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14350347 Query= gi|13508239|ref|NP_110188.1| hypothetical protein MPN500 [Mycoplasma pneumoniae M129] Length=527 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 208 7e-60 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 208 bits (530), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 147/381 (39%), Positives = 201/381 (53%), Gaps = 68/381 (18%) Query 28 LPTFSNVGVGLKANVQGTLGGRQTTTTGNNIPKWATLDQANLQLWTGAGWRNDKTTSGST 87 LPTFSN+ VG+K+ + L T +W + + +WTGAG+R S Sbjct 793 LPTFSNINVGVKSMITQHLNKENT--------RWVFIPNFSPDIWTGAGYR-----VQSA 839 Query 88 GNANDTKFTSATGSGSGQGSSSGTNTSAGNPDGLQADKVDQNGQVKTSVQEATSGDNLTN 147 N F S + ++ + P G G K + A Sbjct 840 NQKNGIPFEQVKPSNNSTPFDPNSDDNKVTPSG---------GSSKPTTYPAL------- 883 Query 148 YTNLPPANLTPTADWPNALSFTNKNNAQRAQLFLRGLLGSIPVLVNKSGQDDNSKF-KAE 206 P +++PT+DW NAL+FTNKNN QR QL LR LLG+IPVL+NKSG D N +F K Sbjct 884 -----PNSISPTSDWINALTFTNKNNPQRNQLLLRSLLGTIPVLINKSG-DSNDQFNKDS 937 Query 207 DQKWSYTDLQSDQTKLNLPAYGEVNGLLNPALVETYFGNTRASGSGSNTTSS-PGIGFKI 265 +QKW T+ NLP +GEVNGL N AL+ TY G+NT S+ P IGFK Sbjct 938 EQKWDKTETNEG----NLPGFGEVNGLYNAALLHTY------GFFGTNTNSTDPKIGFKA 987 Query 266 PEQSGTNTTSKAVLITPGLAWTPQDVGN-IVVSGTSFSFQLGGWLVTFTDFIKPRAGYLG 324 S +++T L+ GL WT QDVGN +V++ TSF FQLGGW +TFTDFI+PR GYLG Sbjct 988 DSSSSSSST----LVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYLG 1043 Query 325 LQLTGLDVSEATQRELIWAKRPWAAFRGSWVNRLGRVESVWDFKGVWADQAQLAAQAATS 384 + L+ L + +IWA +PW +F+GS+++ G +S+WD A ++ + Sbjct 1044 ITLSSLQ-----DQTIIWADQPWTSFKGSYLDSDGTPKSLWD---------PTALKSLPN 1089 Query 385 STTTTATGATLPEHPNALAYQ 405 S+TT T TL P+ YQ Sbjct 1090 SSTTYDTNPTL--SPSFQLYQ 1108 Lambda K H a alpha 0.308 0.125 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 63112308 Query= gi|13508240|ref|NP_110189.1| hypothetical protein MPN501 [Mycoplasma pneumoniae M129] Length=196 ***** No hits found ***** Lambda K H a alpha 0.311 0.128 0.338 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 18718050 Query= gi|13508241|ref|NP_110190.1| hypothetical protein MPN502 [Mycoplasma pneumoniae M129] Length=422 Score E Sequences producing significant alignments: (Bits) Value gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genita... 304 2e-94 >gi|12045044|ref|NP_072854.1| adhesin P1 (mgpB) [Mycoplasma genitalium G-37] Length=1444 Score = 304 bits (779), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 171/396 (43%), Positives = 233/396 (59%), Gaps = 47/396 (12%) Query 25 TEATLTTATTFALRRYDLAGRALYDLDFSKL-NPQTPTRDQTGQITFNPFGGFGLSGAAP 83 E L FA+RRYD GRALYD++ +K+ NP T R G+ F+PF GFGL+G AP Sbjct 118 VEKYLDGQQNFAIRRYDNNGRALYDINLAKMENPSTVQRGLNGEPIFDPFKGFGLTGNAP 177 Query 84 QQWNEVKDKVPVEVAQDPSNPYRFAVLLVPRSVVYYEQLQRGLALPNQGSSSGSGQQNTT 143 WNE+K KVPVEV Q P +P + VLLVP+ + Y L + + S Q++ Sbjct 178 TDWNEIKGKVPVEVVQSPHSPNLYFVLLVPKVALEYHNLNNQVV---KESLEVKATQSSF 234 Query 144 IGAYGLKVKNAEADTAKSNEKLQGYESKSSNGSSSTSTTQRGGSSNENKVKALQVAVKKK 203 L+ + D++K EKL S +T+++ G + + KAL+V V++ Sbjct 235 NPTQRLQKDSPVKDSSKQGEKL----------SETTASSMSSGMATSTRAKALKVEVER- 283 Query 204 SGSQGNSGDQGTEQVELESNDLANAPIKRGSNNNQQVQLKAD-DFGTAPSSSGSGTQDGT 262 GSQ +S L ND A P+K N++ +V+L+A+ +F A Sbjct 284 -GSQSDS---------LLKNDFAKKPLKH-KNSSGEVKLEAEKEFTEA------------ 320 Query 263 PTPWTPWLTTEQIHNDPAKFAASILILYDAPYARNRTAIDRVDHLDPKVMTANYPPSWRT 322 W P LTT+QI + A+++ YDAPY+ N TA VDH+DPK M NYPPSW+T Sbjct 321 ---WKPLLTTDQIAREKG-MGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKT 376 Query 323 PKWNHHGLWDWKARDVLLQTTGFFNPRRHPEWFDGGQTVADNEKTGFDVDNSENTKQGFQ 382 PKWNHHG+WD+ AR++LLQTTGFFNPRRHPEWFD GQ ADN GF V ++++ K GF+ Sbjct 377 PKWNHHGIWDYNARNLLLQTTGFFNPRRHPEWFDEGQAKADNTSPGFKVGDTDHKKDGFK 436 Query 383 KEADSDKSAPIALPFEAYFANIGNLTWFEQALLVFG 418 K + S+PIALPFEAYFANIGN+ ++ +FG Sbjct 437 KNS----SSPIALPFEAYFANIGNMVAIGNSVFIFG 468 Lambda K H a alpha 0.311 0.128 0.380 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 49068353 Query= gi|13508242|ref|NP_110191.1| protein family involved in cytadherence [Mycoplasma pneumoniae M129] Length=381 Score E Sequences producing significant alignments: (Bits) Value gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma geni... 276 3e-86 >gi|12045045|ref|NP_072855.1| mgpC protein (mgpC) [Mycoplasma genitalium G-37] Length=1052 Score = 276 bits (707), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 159/363 (44%), Positives = 205/363 (56%), Gaps = 84/363 (23%) Query 3 GVAQDKVH-GLEQTTQWNQQASQKNLTNNPAPKAVTGFKLDKGRAYRKLNEAWPVYEPLD 61 G Q +VH G Q QW Q +Q +L NNP+P A TGFKL G AYRKL+E+WP+YEP+D Sbjct 168 GKTQREVHLGSGQANQWTSQRNQHDLNNNPSPNASTGFKLTTGNAYRKLSESWPIYEPID 227 Query 62 STKDGKGKDKDGWTTSGASEPKGDAPLVSSTESQMAAVTDSQQSGHNSGLVSLAQRSTTV 121 TK GKGKD GW+++ +E K DAP VS S Sbjct 228 GTKQGKGKDSSGWSSTEENEAKNDAPSVSGGGSSSGT----------------------- 264 Query 122 AVQKSDSSGSQGQGTTDNKFQKYLNTAQALHQMGVIVPSLETWPGKPSTGIATRAGGGVS 181 F KYLNT QAL +G++ Sbjct 265 -------------------FNKYLNTKQALESIGILF----------------------- 282 Query 182 VQAATRQSSSTNEDLP-NVITQLYHTSTSQLAYLNGQIVVMGSNAVPSLWYWVVD---ER 237 ++ P NVITQLY+ STS+LA N IVVMG++ +PS+WYWVV+ + Sbjct 283 -----------DDQTPRNVITQLYYASTSKLAVTNNHIVVMGNSFLPSMWYWVVERSAQE 331 Query 238 TTSGRATWWAHTELNWGTDKQKQFVENQLGFKDDSNSSLTNFKSQGLTQPAYLIAGLDVV 297 S + TW+A+T L+WG DKQKQFVENQLG+K+ ++++ NF S+ TQPAYLI+G+D V Sbjct 332 NASNKPTWFANTNLDWGEDKQKQFVENQLGYKETTSTNSHNFHSKSFTQPAYLISGIDSV 391 Query 298 QDHLVFAAFKAGAVGYD---MTTDSNASTKDQALAWSTTAGLDSAGGYNKLVENTGGLNG 354 D ++F+ FKAG+VGYD ++ S++STKDQALAWSTT LDS GY LV N GLNG Sbjct 392 NDQIIFSGFKAGSVGYDSSSSSSSSSSSTKDQALAWSTTTSLDSKTGYKDLVTNDTGLNG 451 Query 355 PIN 357 PIN Sbjct 452 PIN 454 Lambda K H a alpha 0.309 0.125 0.370 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 43594029 Query= gi|13508243|ref|NP_110192.1| hypothetical protein MPN504 [Mycoplasma pneumoniae M129] Length=126 ***** No hits found ***** Lambda K H a alpha 0.311 0.132 0.354 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9516325 Query= gi|13508244|ref|NP_110193.1| hypothetical protein MPN505 [Mycoplasma pneumoniae M129] Length=253 ***** No hits found ***** Lambda K H a alpha 0.316 0.134 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26458145 Query= gi|13508245|ref|NP_110194.1| hypothetical protein MPN506 [Mycoplasma pneumoniae M129] Length=793 Score E Sequences producing significant alignments: (Bits) Value gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma ge... 738 0.0 gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma ge... 518 4e-176 >gi|12045115|ref|NP_072926.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=765 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/827 (50%), Positives = 543/827 (66%), Gaps = 102/827 (12%) Query 1 MKFK-YGAIFFSGFLGLSAILAACGTKGKFDQVDDGKIKLASSLTSKSASKALQAIVKKY 59 MK K + A+ S F G S +L AC +FDQVDDGKIKLASSLTSK A++AL+ +VKKY Sbjct 1 MKLKGFLAVGVSVF-GFSGLLMACSVVSQFDQVDDGKIKLASSLTSKRAAEALETVVKKY 59 Query 60 NEVKKPGDYPIEITQIAGGYDGGRSDLQTRVNVKDTTNFYNLILNYPDLVSTLGRVGMEL 119 N+ K PGDYPIEI QIAGGYDGG+ D+QT+V+ KD NFYNLILNYP++VSTL R M L Sbjct 60 NDTKDPGDYPIEIVQIAGGYDGGKKDVQTKVSTKDKNNFYNLILNYPEIVSTLSRSKMAL 119 Query 120 PFDNVKVDKLSPRFLDFNNRISAISKPGIYGIPVSLSTEVLSINGPVLHYILNNAKKKEG 179 FD V VDKL P FL FN+RI I GIY IP+S+ST+++ INGPVLHYILN+A+K EG Sbjct 120 NFDGVNVDKLHPNFLSFNSRIGGIRDDGIYAIPISMSTDLMVINGPVLHYILNSARK-EG 178 Query 180 TLNQ---KMTSSSEGKNSSGTLTVATDTETSSLWKKIEDSAKANGKSDEKGKGKKKDNKS 236 T + T SS GTL +A D+ET+ LW+ I+ +A+ N S+E K +K+ +S Sbjct 179 TPTSTTVQATVSSRSAEKKGTLEIANDSETTKLWQNIQTTAQNN--SNETTKEQKQVKRS 236 Query 237 ATFSLVQLKQTQEKTDDSQDTKNSDDQVKKSWGEYQEVDGVLKNFEFKASIFENWHDLLD 296 ++ T T +++DT SD+++K+ WGEYQEVDG LKNF FKASIFENW++ LD Sbjct 237 SS-----SSSTTSTTGETKDTTKSDNKIKEFWGEYQEVDGGLKNFTFKASIFENWNETLD 291 Query 297 FSTRVAKSF-KKIHENSNKKGNDIQGILGVDSTPNSLFTSVFAAGGGDYNNFFYKIE--N 353 F+TR+A SF +K+ +NK G D+QG+LGVDS+ N+L+ +VFAAG +Y+NFF+ I+ Sbjct 292 FATRIANSFPEKVKNITNKTGLDLQGVLGVDSSSNALYAAVFAAGQANYDNFFFNIDKRT 351 Query 354 GRADFSNFKNKGTSYQNLQKVFGDFKGLIDKNGIFVNKGGSYSSNFQKFHQLAYSISSTS 413 G AD+SNF NK +SYQNL+ V+ DF LI NG+FVN+GGSYSSNF+KFHQLA+S+SS+ Sbjct 352 GYADYSNFLNKDSSYQNLESVYNDFYKLIQANGLFVNRGGSYSSNFEKFHQLAFSVSSSG 411 Query 414 GFFYSFAGKSAKRLNFGDSFIEYPRFTQEIKAPSKNGENGQTNEGNSTNGEQNLLGTFEV 473 G+ Y FA +AKRL F + IEYP FTQ I+AP NS+ E NLLGTF++ Sbjct 412 GYSYYFAKDNAKRLKFSNYAIEYPSFTQTIQAP------------NSSETESNLLGTFKL 459 Query 474 KDDSKPKEEVKSNKNSGKESSQNQGKKSNNNKTIYLYETKIPDGKTAGDNAILIKDKNVI 533 + K I LY+ IP GK G +AILI + N+I Sbjct 460 SE-----------------------------KDINLYKGSIPSGKQQGVDAILISNPNLI 490 Query 534 EKLKSAAKEENKEQTAEATKAAITSNKAKSTKKESSKVIGYTTTDSVREDGKNIFAIDRV 593 L+ A K++N Q +E+T ++K+IGYTTT +V D +NIF++ ++ Sbjct 491 NILEQA-KQKNTAQGSEST---------------TNKIIGYTTTANVNVDNQNIFSVSKL 534 Query 594 NGENYDRKIIVGAKAETLNQSSTLQSEEAIVLPAPGKYLNGDPKKVTITQGPNIIGIHAN 653 N E + RKIIV A ETL+QS TLQS E+IVLP PGKY + D KV ITQGPN+IGIHAN Sbjct 535 NNEQFQRKIIVNATEETLDQSQTLQSNESIVLPMPGKYKSTDKNKVMITQGPNLIGIHAN 594 Query 654 EKENAETQKFVDWFLNSPQT-WEKQSRDKKGSSEKQTAAEFFAESASYILPLKEIFDKND 712 EKEN ET+KFV+WFLN T W ++ K +TAAE+F + ASYILPLKE F+K+ Sbjct 595 EKENIETKKFVNWFLNQSITDWNSNNQQKNSDQTTKTAAEYFTDQASYILPLKEKFNKSS 654 Query 713 TKTEKGKNS----------------------------KTQQRTNTYAEKALELFKQISQN 744 KG +S KT +NT+ KALELF+Q + N Sbjct 655 DLELKGSSSSSNLTTSSASASLLISNNSSTASSPAPKKTNNNSNTFTAKALELFQQAANN 714 Query 745 QIVSYSDPSDFRSGKFRDAIGATFNAAVSSKADFNKFVQNFTATLGS 791 +I+ +SDPSDFR+G FR+ I ++FNAAV+SK FN+FVQNF +LGS Sbjct 715 EIIPFSDPSDFRNGTFRNNISSSFNAAVNSKVSFNQFVQNFINSLGS 761 >gi|12045038|ref|NP_072848.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=701 Score = 518 bits (1333), Expect = 4e-176, Method: Compositional matrix adjust. Identities = 316/803 (39%), Positives = 459/803 (57%), Gaps = 115/803 (14%) Query 1 MKFKYGAIFF--SGFLGLSAILA-ACGTKGKFDQVDDGKIKLASSLTSKSASKALQAIVK 57 MKFK +FF S LG A+ AC +FDQVDDGKIKLA+ +TS SAS +L I+ Sbjct 1 MKFK---LFFLSSSVLGPIALFTTACSAVYRFDQVDDGKIKLAT-VTSASASGSLTTIIS 56 Query 58 KYNEVKKPGDYPIEITQI--AGGYDGGRSDLQTRVNVKDTTNFYNLILNYPDLVSTLGRV 115 KYN K P DYP+E+ + G Y G+ DLQ ++ KD NFYNL NY D+VS L R Sbjct 57 KYNSQKDPNDYPVELVSLDSRGSYSNGKKDLQAKLLAKDKNNFYNLTFNYSDVVSILSRS 116 Query 116 GMELPFDNVKVDKLSPRFLDFNNRISAISKPGIYGIPVSLSTEVLSINGPVLHYILNNAK 175 MEL FD V P FL FNN IS ++ IY +P ++S EVL +NGPVLHYIL++AK Sbjct 117 QMELSFDTVDTSNFDPSFLSFNNNISNVNPNSIYALPATVSGEVLVLNGPVLHYILSSAK 176 Query 176 KKEGTLNQKMTSSSEGKNSS-GTLTVATDTETSSLWKKIEDSAKANGKSDEKGKGKKKDN 234 K T +++ S NS+ GT+ VA+D+ETSSLW K+E +AK N +++E Sbjct 177 KDSNT---TLSTHSASNNSNKGTMVVASDSETSSLWTKLEAAAKMNAQTNET-------- 225 Query 235 KSATFSLVQLKQTQEKTDDSQDTKNSDDQVKKSWGEYQEVDGVLKNFEFKASIFENWHDL 294 + + + +S T+ SD ++KK WG+YQEVDG LKN+ FKAS+F NW DL Sbjct 226 ----------QVLKSNSSESNQTQASDTEIKKIWGDYQEVDGGLKNYTFKASVFNNWKDL 275 Query 295 LDFSTRVAKSFKKIHENSNKKGNDIQGILGVDSTPNSLFTSVFAAGGGDYNNFFYKIENG 354 DF+TR+AKSF K+ + + KKG ++Q + G+ S N+L+T++FA+G DYNNF + I+N Sbjct 276 NDFATRIAKSFTKL-QTTTKKGEEVQAVFGIGSLENALYTALFASGKADYNNFLFNIKNQ 334 Query 355 RADFSNFKNKG-TSYQNLQKVFGDFKGLIDKNGIFVNKGGSYSSN-FQKFHQLAYSISST 412 R +FSNF NK T++QNL+ +F FK LID+NG+ N + N + KF+QLA+ SST Sbjct 335 RINFSNFFNKSSTAFQNLKTIFNSFKSLIDQNGLISNAHFNTPVNDYAKFNQLAFYTSST 394 Query 413 SGFFYSFAGKSAKRLNFGDSFIEYPRFTQEIKAPSKNGENG-QTNEGNSTNGEQNLLGTF 471 + F YSFA S KRL D IE +KN ++ + N + ++ NL+GT Sbjct 395 ARFPYSFASDSVKRLIVNDKTIE-----------NKNNKSVFEVNLSSDSDNNSNLIGTV 443 Query 472 EVKDDSKPKEEVKSNKNSGKESSQNQGKKSNNNKTIYLYETKIPDGKTAGDNAILIKDKN 531 ++ N+K + LYE ++ K G +A+LIKD+ Sbjct 444 SLE----------------------------NSKQVSLYEKQVDSNKQIGVDALLIKDET 475 Query 532 VIEKLKSAAKEENKEQTAEATKAAITSNKAKSTKKESSKVIGYTTTDSVREDGKNIFAID 591 +I LKS + + + +E ++ K++ + +TT V D K IF + Sbjct 476 LINHLKSLKSQVSAKSASETSQT-----------KQNKTFLAFTT---VNADQKAIFDVG 521 Query 592 RVNGENYDRKIIVGAKAETLNQSSTLQSEEAIVLPAPGKYLNGDPKKVTITQGPNIIGIH 651 ++NG+ KII+ A T + STLQ +EAIVL AP ++ + DP + + QGP++IGIH Sbjct 522 KLNGKT--AKIIINATETTNAKISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIH 579 Query 652 ANEKENAETQKFVDWFLNSPQTWEKQSRDKKGSSEKQTAAEFFAESASYILPLKEIFDKN 711 ANE+E+ ET+KFV+W+LN+ WE+ S +T AE+ A+ ASY+LP K + Sbjct 580 ANEREDIETKKFVNWYLNTKVQWEENSI--------KTPAEYVADKASYLLPFKNRLN-- 629 Query 712 DTKTEKGKNSKTQQRTNTYAEKALELFKQISQNQIVSYSDPSDFRSGKFRDAIGATFNAA 771 TN+Y E Q + + +++P+DF S K RD + + NAA Sbjct 630 --------------NTNSYNEFVKTAVSQFADKNVTKFAEPADFLSNKVRDGVKSNLNAA 675 Query 772 VSSKA-DFNKFVQNFTATLGSDI 793 +++ + DF+ F+ + T LGSD+ Sbjct 676 INNHSIDFDSFINDLTDYLGSDV 698 Lambda K H a alpha 0.309 0.127 0.350 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 98796555 Query= gi|13508246|ref|NP_110195.1| type I restriction enzyme ecokI specificity protein (hsdS) homolog [Mycoplasma pneumoniae M129] Length=363 ***** No hits found ***** Lambda K H a alpha 0.320 0.136 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 41054571 Query= gi|13508247|ref|NP_110196.1| membrane export protein family [Mycoplasma pneumoniae M129] Length=509 Score E Sequences producing significant alignments: (Bits) Value gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 513 0.0 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 480 3e-166 gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 129 7e-34 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 513 bits (1321), Expect = 0.0, Method: Compositional matrix adjust. Identities = 266/489 (54%), Positives = 359/489 (73%), Gaps = 6/489 (1%) Query 23 IPKVSQKLFGLLGDGFFPQLHPKGLKIADNIAALFDQYNLKSIALKNFDLNLERKNDIVI 82 +PKV Q F L + FFPQLHPKGL I ++I +F+QYNLK I LK+F+L L +KNDIVI Sbjct 1 MPKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVI 60 Query 83 QGKVCYSFSIKMDFATIYEGDGSTIDLQFALNASTTNFANLTDLQDSFWQSGKDLNTQLF 142 + K+ YSF IKMDF YEG +T++LQF L A T+NF NL +LQ+SF +G DLNTQLF Sbjct 61 KDKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSF--NGNDLNTQLF 118 Query 143 WKPSVHKLISNGTNDLTTLAQTALGDSLFDTKVNLTESVIEINNQTDVA-TKFREKVLNS 201 WKP ++KL+ NDLT++A+TA+ DSLF + N+ SV++I+ Q D+A TKF ++++ Sbjct 119 WKPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEP 178 Query 202 FKQEREKAHAEHVEKLRKLEEERKLQEAEAKAKAEEVKKLEAEREAFNKSLTAASEFKQY 261 FK+EREKA A++ E+ R L EER+ QE E K K EE K+L+ ++E FNKS A EFK Y Sbjct 179 FKKEREKAKADYEEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKDY 238 Query 262 WSKKNKDVTDKKQLAEALKISLEADRNRTFSFLIAGFRTAI-DWYYNAKKENNDAKQKAF 320 W + KDVTDK QL +ALK S AD+N+TFS LI F A D+Y N KK+ ++ +KAF Sbjct 239 WKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKAF 298 Query 321 GSQGIQFPKDGLNGIYMPDWLRGELTSKSNINLKIKELKVQNKIESPTINWIDGVGIKQD 380 +GIQFP+ GL G+YM DWLRG+LTS ++I L + +K++NK +PTI+W + GI+ Sbjct 299 SEKGIQFPRQGLEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENNPTIDWKNN-GIEFR 357 Query 381 KANPFNYRFEVDIKYTGGYQLYGFYAFAALFTKFPSSWSGEMNLKFIVDGSIPVYTVAKK 440 + P+ ++FE+DIKY GGY+L G +++ A F+ PSSW+GEM++KFIVDG + V Sbjct 358 QHYPYKFKFEIDIKYQGGYKLTGLFSWFAPFSGIPSSWNGEMDVKFIVDGDLDYNLVQNT 417 Query 441 DYPGSLFQFNDKDELLFTLYVKEQISVADPNFMNLLRGQNLHDLELVTGATKPPVVDLAS 500 DYPGSLFQF D ++LLFTL+VKEQI V D FM+LL+ QNLH+L+L GATKPPVVDLAS Sbjct 418 DYPGSLFQFKD-NQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNGATKPPVVDLAS 476 Query 501 YLHFVLLSA 509 YLH+++L++ Sbjct 477 YLHYLVLNS 485 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 480 bits (1235), Expect = 3e-166, Method: Compositional matrix adjust. Identities = 269/526 (51%), Positives = 357/526 (68%), Gaps = 20/526 (4%) Query 1 MNQLQAEINAANAVFPVSDS-TKIPKVSQKLFGLLGDGFFPQLHPKGLKIADNIAALFDQ 59 MNQLQ ++ AANA+FPV D+ K+PKV +LF L+ D FP+L+PKGL I+DNIAALF++ Sbjct 124 MNQLQKQVEAANAIFPVDDAFVKLPKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFER 183 Query 60 YNLKSIALKNFDLNLERKNDIVIQGKVCYSFSIKMDFATIYEGDGST-IDLQFALNASTT 118 YNLKSI LKNFDL RK D++I+ KV Y+F ++M F T+Y G G+T I+L F L A T Sbjct 184 YNLKSIELKNFDLAFLRKADVIIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTV 243 Query 119 NFANLTDLQDSFWQSGKDLNTQLFWKPSVHKLISNGTNDLTTLAQTALGDSLFDTKVNLT 178 NFANL DLQ++F + G DL+TQLFW P+V+KL N NDLT +A+T +G+S F T VNL Sbjct 244 NFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLA 303 Query 179 ESVIEINN-QTDVATKFREKVLNSFKQEREKAHAEHVEKLRKLEEERKLQEAEAKAKAEE 237 +SVIE + Q V F E+VL FK+ERE A + E+ R+LEEERK Q E + + E Sbjct 304 KSVIEYDKVQPLVKQAFEERVLTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAE 363 Query 238 V-----------KKLEAEREAFNKSLTAASEFKQYWSKKNKDVTDKKQLAEALK--ISLE 284 +K EREA+ KS + +FK YW K KDVT K L +ALK I+ Sbjct 364 EKRKAEEAKRNQEKARREREAYEKSFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIATP 423 Query 285 ADRNRTFSFLIAGFRTAIDWYYNAKKENNDAKQKAFGSQGIQFPK--DGLNGIYMPDWLR 342 A RNRTFS LI GF + ++ Y+NA K + + K+ AFG +GIQFP+ G+NG+YM ++LR Sbjct 424 AYRNRTFSLLIKGFASGVERYFNANKNDKELKKLAFGEKGIQFPRADAGVNGLYMSNFLR 483 Query 343 GELTSKSNINLKIKELKVQNKIESPTINWIDGVGIKQDKANPFNYRFEVDIKYTGGYQLY 402 ELTSK+ +L +K++KV+N +E + W D GI +ANP+ + + IKY G Y ++ Sbjct 484 HELTSKAKFSLNLKDIKVENTVEDTQLYWKDN-GIHLKQANPYKFNLNIKIKYNGWYNVH 542 Query 403 GFYAFAALFTKFPSSWSGEMNLKFIVDGSIPVYTVAKKDYPGSLFQFNDKDELLFTLYVK 462 + A P+ WSGEMNL F+V+G + V K DYPG+ FQF DK+ELLFTL V+ Sbjct 543 WWNWLPAKILGIPTDWSGEMNLTFVVNGDLS-EIVDKHDYPGTFFQFTDKNELLFTLAVR 601 Query 463 EQISVADPNFMNLLRGQNLHDLELVTGATKPPVVDLASYLHFVLLS 508 EQI V + +FM LL+ QNLH+L+L +GATKPPVVDLASY HFVLL+ Sbjct 602 EQIKVDNNHFMGLLKSQNLHNLQLASGATKPPVVDLASYFHFVLLT 647 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 129 bits (325), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 140/549 (26%), Positives = 244/549 (44%), Gaps = 55/549 (10%) Query 5 QAEINAANAVFPVSDST----KIPKVSQKLFGLLGDGFFPQLHPKGLKIADNIAALFDQY 60 Q +I A+ +FP + + P V L G GFFP L G + + + F + Sbjct 118 QQKIKDADKIFPSTKDNPPKEENPNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDF 177 Query 61 NLKSIALKNFDLNLERKNDIVIQGKVCYSFSIKMDFATIYEGDGSTIDLQFALNASTTNF 120 + +KNF+++L +NDI+ KV Y+F +K + A + + S +D F T NF Sbjct 178 RINDYKIKNFNVDLVSENDIIKHDKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNF 237 Query 121 ANLTDLQDSFWQSGKDLNTQLFWKPSVHKLISNGTNDLTTLAQTALGDSLFDTKVNLTES 180 +++ + + F L + + K +VHKL NG+ D T +A L D +++L +S Sbjct 238 SDIENFNEIF-NRKPALQFRFYTKINVHKLSFNGS-DSTYIANILLQDQFNLLEIDLNKS 295 Query 181 VIEINNQTDVATKFREKVLNSFKQEREKAHAEHVEKLRKLEEERKLQEA-------EAKA 233 + ++ + + +F ++ + Q+R +A E+ R++ EE++ QE E K Sbjct 296 IYALDLE-NAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKE 354 Query 234 KAEEVKKLEAEREAFNKSLTAASEFKQYWSK----------KNK-DVTDKKQLAEALKIS 282 KAE+ K+++ + K+L F ++S NK +V ++ L +AL+IS Sbjct 355 KAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQIS 414 Query 283 LEADRNRTFSFLIAGFRTAI-----DWYYNAKKENNDAKQKAFGSQG---------IQFP 328 + TF + G++ +NA +++ A Q AFG + P Sbjct 415 YSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDK-AFQYAFGLGPNTSEQQLGRVTLP 473 Query 329 KDGLNGIYMPDWLRGELTSKSNINL---KIKELKVQNKIESPTINWIDGVGIKQDK---- 381 G GI M DWLR L ++ L K E + WI K ++ Sbjct 474 GYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNREYGD 533 Query 382 ANPFN---YRFEVDIKYTGGYQLYGFYAFAALFTKFPSSWSGEMNLKFIVDGSIPVYTVA 438 F YRF++ I + L + A P SWSG++ + DG +P Y + Sbjct 534 GERFKGKAYRFKLSISFELEGHLTAHWWTIAFRGSIPGSWSGKLRVTHEFDGDVPYYRLH 593 Query 439 KKDYPGSLFQFNDKDELLFTLYVKEQIS-VADPNFMNLLRGQNLHDLELVTGATKPPVVD 497 ++ D +LLF + ++++ V + + LLR QNLH+LE + P +D Sbjct 594 TTP---PQYRLTDDMKLLFVPHSIQRVTAVGNESINGLLRSQNLHNLERQSYEATAP-ID 649 Query 498 LASYLHFVL 506 L SY+ + + Sbjct 650 LISYMLYAI 658 Lambda K H a alpha 0.316 0.133 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 60949155 Query= gi|13508248|ref|NP_110197.1| membrane export protein family [Mycoplasma pneumoniae M129] Length=427 Score E Sequences producing significant alignments: (Bits) Value gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 333 2e-112 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 309 5e-101 gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 100 2e-24 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 333 bits (854), Expect = 2e-112, Method: Compositional matrix adjust. Identities = 190/425 (45%), Positives = 277/425 (65%), Gaps = 15/425 (4%) Query 1 MKFHTVYVGKNTKIDLDFALQAQTNNFSSLEELRESFTNSGQTLSTQLFWKPVIDKLITD 60 M F Y G N ++L F L+AQT+NF +L+EL+ SF +G L+TQLFWKP+I+KL+ Sbjct 72 MDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSF--NGNDLNTQLFWKPLINKLVDK 129 Query 61 EGNDLTTIARTAIGENLFDLKVNLTDSVID-GTVLTKARKSFEERILNPFIEQRKEAKRI 119 NDLT+IA+TA+ ++LF N+ +SV+ L A+ FE+ I+ PF ++R++AK Sbjct 130 NQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPFKKEREKAKAD 189 Query 120 HDEEQARLERERKQLEEELKGKEKKVQELIREKTRFLSSFNNVKSFKDYWKGKGKNVEIK 179 ++E+Q L ER++ EEELK KE++ + L ++ +F SF N K FKDYWK + K+V K Sbjct 190 YEEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKDYWKNQKKDVTDK 249 Query 180 SQLIEVLKLAFKTDRNRTFIFLTDAFRNAV-DWYYNAKKDDQDSKKKAFGDVGIELPKLG 238 +QLI+ LK +F D+N+TF L ++F A D+Y N KKD+ ++ KKAF + GI+ P+ G Sbjct 250 TQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKAFSEKGIQFPRQG 309 Query 239 VDGIFIPNWLRWELKHRANLKLNLQSVTTKDIHNDINGWGVPKQIFWNEAKNGIEFRQTY 298 ++G+++ +WLR +L ++KLNL S+ ++ N+ I W NGIEFRQ Y Sbjct 310 LEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENN-------PTIDW--KNNGIEFRQHY 360 Query 299 PFKYAFQIRMKYTGDYGLKGIYWTLANWGLGGIPPEWKGEMELVLNVDGQLADWITSKKD 358 P+K+ F+I +KY G Y L G++ A GIP W GEM++ VDG L + D Sbjct 361 PYKFKFEIDIKYQGGYKLTGLFSWFA--PFSGIPSSWNGEMDVKFIVDGDLDYNLVQNTD 418 Query 359 YPGTLFQFRDDKLLFTLHITQWINVQDQRFKGLLKKQQLDVLEPWGGDIKVPVVDLASYL 418 YPG+LFQF+D++LLFTLH+ + I VQD +F LLK+Q L L+ G K PVVDLASYL Sbjct 419 YPGSLFQFKDNQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNGATKPPVVDLASYL 478 Query 419 HFLIL 423 H+L+L Sbjct 479 HYLVL 483 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 309 bits (792), Expect = 5e-101, Method: Compositional matrix adjust. Identities = 190/445 (43%), Positives = 268/445 (60%), Gaps = 30/445 (7%) Query 1 MKFHTVYVGK-NTKIDLDFALQAQTNNFSSLEELRESFTNSGQTLSTQLFWKPVIDKLIT 59 M+F TVYVG NT I+LDF L+AQT NF++L++L+ +F G LSTQLFW P ++KL Sbjct 218 MQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLSTQLFWIPTVNKLTD 277 Query 60 DEGNDLTTIARTAIGENLFDLKVNLTDSVID-GTVLTKARKSFEERILNPFIEQRKEAKR 118 + GNDLT IA+T IGE+ F VNL SVI+ V +++FEER+L PF ++R+ AK+ Sbjct 278 NAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQAFEERVLTPFKKEREAAKK 337 Query 119 IH----------DEEQARLERERKQLEEELKGKEKKVQELI-REKTRFLSSFNNVKSFKD 167 + + Q R R+ E+ + K+ QE RE+ + SFN+ K FK Sbjct 338 AYEEEQRRLEEERKRQLEELRRREAEEKRKAEEAKRNQEKARREREAYEKSFNSFKDFKF 397 Query 168 YWKGKGKNVEIKSQLIEVLKLAFKTD--RNRTFIFLTDAFRNAVDWYYNAKKDDQDSKKK 225 YW KGK+V K+ LI+ LK A T RNRTF L F + V+ Y+NA K+D++ KK Sbjct 398 YWLTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGVERYFNANKNDKELKKL 457 Query 226 AFGDVGIELPK--LGVDGIFIPNWLRWELKHRANLKLNLQSVTTKDIHNDINGWGVPKQI 283 AFG+ GI+ P+ GV+G+++ N+LR EL +A LNL+ + ++ D Q+ Sbjct 458 AFGEKGIQFPRADAGVNGLYMSNFLRHELTSKAKFSLNLKDIKVENTVEDT-------QL 510 Query 284 FWNEAKNGIEFRQTYPFKYAFQIRMKYTGDYGLKGIYWTLANWGLGGIPPEWKGEMELVL 343 +W + NGI +Q P+K+ I++KY G Y + +W + GIP +W GEM L Sbjct 511 YWKD--NGIHLKQANPYKFNLNIKIKYNGWYNVH--WWNWLPAKILGIPTDWSGEMNLTF 566 Query 344 NVDGQLADWITSKKDYPGTLFQFRD-DKLLFTLHITQWINVQDQRFKGLLKKQQLDVLEP 402 V+G L++ I K DYPGT FQF D ++LLFTL + + I V + F GLLK Q L L+ Sbjct 567 VVNGDLSE-IVDKHDYPGTFFQFTDKNELLFTLAVREQIKVDNNHFMGLLKSQNLHNLQL 625 Query 403 WGGDIKVPVVDLASYLHFLILADKS 427 G K PVVDLASY HF++L +KS Sbjct 626 ASGATKPPVVDLASYFHFVLLTEKS 650 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 100 bits (249), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 119/451 (26%), Positives = 210/451 (47%), Gaps = 54/451 (12%) Query 12 TKIDLDFALQAQTNNFSSLEELRESFTNSGQTLSTQLFWKPVIDKLITDEGNDLTTIART 71 + +D DF +T+NFS +E E F N L + + K + KL + G+D T IA Sbjct 222 SNVDFDFDFILKTDNFSDIENFNEIF-NRKPALQFRFYTKINVHKL-SFNGSDSTYIANI 279 Query 72 AIGENLFDLKVNLTDSVIDGTVLTKARKSFEERILNPFIEQRKEAKRIHDEEQARL---- 127 + + L+++L S+ L A++ F++ + P ++R+EAK +EEQ R+ Sbjct 280 LLQDQFNLLEIDLNKSIY-ALDLENAKERFDKEFVQPLYQKRREAKLAWEEEQRRIAEEQ 338 Query 128 ---ERERKQLEEELKGKEKKVQELIREKTRFLSSFNNVKSFKDYW-KGKGK--------- 174 E ER ++ +ELK K +K + + + + N+ +F +++ G+ + Sbjct 339 RRQEEERARILKELKEKAEKDKRVKEAQNNLQKALGNLDTFFNFFSSGQDRVLLGFDPNK 398 Query 175 -NVEIKSQLIEVLKLAFKTDRNRTF-IFLTDAFRNAVDWY----YNAKKDDQDSKKKAFG 228 NV+ + L + L++++ + TF I L +V +NA +DD+ + + AFG Sbjct 399 YNVQTREGLFKALQISYSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDK-AFQYAFG 457 Query 229 --------DVG-IELPKLGVDGIFIPNWLRWELKHRANLKL----NLQSVTTKDIHNDIN 275 +G + LP G +GI + +WLRW L + + L N+++ D ++ + Sbjct 458 LGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGDANDKKH 517 Query 276 GWGVPKQIFWN-EAKNGIEFRQTYPFKYAFQIRMKYTGDYGLKGIYWTLANWGLGGIPPE 334 W P N E +G F+ Y F++ + + + L +WT+A G IP Sbjct 518 IWISPHTFKLNREYGDGERFKGK---AYRFKLSISFELEGHLTAHWWTIA--FRGSIPGS 572 Query 335 WKGEMELVLNVDGQLADW--ITSKKDYPGTLFQFRDDKLLFTLHITQWIN-VQDQRFKGL 391 W G++ + DG + + T+ Y T D KLLF H Q + V ++ GL Sbjct 573 WSGKLRVTHEFDGDVPYYRLHTTPPQYRLT----DDMKLLFVPHSIQRVTAVGNESINGL 628 Query 392 LKKQQLDVLEPWGGDIKVPVVDLASYLHFLI 422 L+ Q L LE + P +DL SY+ + I Sbjct 629 LRSQNLHNLERQSYEATAP-IDLISYMLYAI 658 Lambda K H a alpha 0.319 0.137 0.414 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 49771338 Query= gi|13508249|ref|NP_110198.1| membrane export protein family [Mycoplasma pneumoniae M129] Length=458 Score E Sequences producing significant alignments: (Bits) Value gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 380 3e-130 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 332 1e-109 gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 121 3e-31 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 380 bits (976), Expect = 3e-130, Method: Compositional matrix adjust. Identities = 209/461 (45%), Positives = 309/461 (67%), Gaps = 22/461 (5%) Query 4 VPKVPENFFSFFQEDYFPRLTPRGLNIADNVASLFNDYNLNSIDFTGFNLKLLRQNDIVL 63 +PKVP+NFF F E++FP+L P+GLNI +++ +FN YNL I FNL+L+++NDIV+ Sbjct 1 MPKVPQNFFKFLNENFFPQLHPKGLNITESIVEIFNQYNLKKIQLKDFNLELVKKNDIVI 60 Query 64 KNKVRYNFALQMGFDTVYAGKNTTI-LKFSLQAQTINFTSLQELRDSFENNGNTLSTHLF 122 K+K+RY+F ++M F+ Y G N T+ L+F L+AQT NF +LQEL++SF NGN L+T LF Sbjct 61 KDKIRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSF--NGNDLNTQLF 118 Query 123 WKPVVEQLTTDGGNDLTNIAKTAIGESLFNLKVNLTDSI--IDQSVLQQAQKSFEDKILD 180 WKP++ +L NDLT+IAKTA+ +SLF N+ +S+ ID+ L A+ FE +I++ Sbjct 119 WKPLINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQ-LDLAKTKFEKEIIE 177 Query 181 PFHAERVEAKRIHDEEARRLEAERKRIAAELKAKEDEARRIREEHWAFYQSTRDVKSFKE 240 PF ER +AK ++E+ R L ER++ ELK KE+EA+R++E+ F +S + K FK+ Sbjct 178 PFKKEREKAKADYEEQQRILAEERRKQEEELKRKEEEAKRLKEQQEQFNKSFENAKEFKD 237 Query 241 FWAKRGKNVADKKQLIEALKLSFQAKQNPTFELLTNAFRNAINWYY-NHKKHDEEAKRTA 299 +W + K+V DK QLI+ALK SF A +N TF LL N+F A + YY N+KK + E + A Sbjct 238 YWKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENAKKA 297 Query 300 FGSGGISFAQSGLNGIFMPNWLRWELINRANIQLQLQNVKV--RENNFEVNGWGVPVSIN 357 F GI F + GL G++M +WLR +L + +I+L L ++K+ +ENN +I+ Sbjct 298 FSEKGIQFPRQGLEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENN---------PTID 348 Query 358 WNDHNNGINYRATTPWTYGFEITMNYKGSYGLKGIYWTLANWGLGGIPPEWSGDMELKFQ 417 W NNGI +R P+ + FEI + Y+G Y L G++ A GIP W+G+M++KF Sbjct 349 W--KNNGIEFRQHYPYKFKFEIDIKYQGGYKLTGLFSWFA--PFSGIPSSWNGEMDVKFI 404 Query 418 IDGKLANWITQKQDYPGSLFQFQNDKLLFTLHVVQRITVKD 458 +DG L + Q DYPGSLFQF++++LLFTLHV ++I V+D Sbjct 405 VDGDLDYNLVQNTDYPGSLFQFKDNQLLFTLHVKEQIKVQD 445 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 332 bits (852), Expect = 1e-109, Method: Compositional matrix adjust. Identities = 204/477 (43%), Positives = 292/477 (61%), Gaps = 37/477 (8%) Query 2 LTVPKVPENFFSFFQEDYFPRLTPRGLNIADNVASLFNDYNLNSIDFTGFNLKLLRQNDI 61 + +PKVP F ++ FP+L P+GLNI+DN+A+LF YNL SI+ F+L LR+ D+ Sbjct 145 VKLPKVPTELFKLVDDNVFPKLNPKGLNISDNIAALFERYNLKSIELKNFDLAFLRKADV 204 Query 62 VLKNKVRYNFALQMGFDTVYAGKNTTI--LKFSLQAQTINFTSLQELRDSFENNGNTLST 119 ++K+KVRYNF +QM F TVY G T+ L F+L+AQT+NF +LQ+L+++F GN LST Sbjct 205 IIKDKVRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLST 264 Query 120 HLFWKPVVEQLTTDGGNDLTNIAKTAIGESLFNLKVNLTDSIIDQSVLQQ-AQKSFEDKI 178 LFW P V +LT + GNDLT+IAKT IGES F VNL S+I+ +Q +++FE+++ Sbjct 265 QLFWIPTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQAFEERV 324 Query 179 LDPFHAERVEAKRIH--------------DEEARRLEAERKRIAAELKAKEDEARRIREE 224 L PF ER AK+ + EE RR EAE KR A E K +++ARR RE Sbjct 325 LTPFKKEREAAKKAYEEEQRRLEEERKRQLEELRRREAEEKRKAEEAKRNQEKARRERE- 383 Query 225 HWAFYQSTRDVKSFKEFWAKRGKNVADKKQLIEALK--LSFQAKQNPTFELLTNAFRNAI 282 A+ +S K FK +W +GK+V K LI+ALK ++ A +N TF LL F + + Sbjct 384 --AYEKSFNSFKDFKFYWLTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGV 441 Query 283 NWYYNHKKHDEEAKRTAFGSGGISF--AQSGLNGIFMPNWLRWELINRANIQLQLQNVKV 340 Y+N K+D+E K+ AFG GI F A +G+NG++M N+LR EL ++A L L+++KV Sbjct 442 ERYFNANKNDKELKKLAFGEKGIQFPRADAGVNGLYMSNFLRHELTSKAKFSLNLKDIKV 501 Query 341 RENNFEVNGWGVPVSINWNDHNNGINYRATTPWTYGFEITMNYKGSYGLKGIYWTLANWG 400 EN E + W D NGI+ + P+ + I + Y G Y + +W Sbjct 502 -ENTVE------DTQLYWKD--NGIHLKQANPYKFNLNIKIKYNGWYNVH--WWNWLPAK 550 Query 401 LGGIPPEWSGDMELKFQIDGKLANWITQKQDYPGSLFQFQN-DKLLFTLHVVQRITV 456 + GIP +WSG+M L F ++G L+ I K DYPG+ FQF + ++LLFTL V ++I V Sbjct 551 ILGIPTDWSGEMNLTFVVNGDLSE-IVDKHDYPGTFFQFTDKNELLFTLAVREQIKV 606 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 121 bits (303), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 126/497 (25%), Positives = 226/497 (45%), Gaps = 63/497 (13%) Query 5 PKVPENFFSFFQEDYFPRLTPRGLNIADNVASLFNDYNLNSIDFTGFNLKLLRQNDIVLK 64 P V + ++ +FP L G N+ + V F D+ +N FN+ L+ +NDI+ Sbjct 141 PNVLDTLANYQGAGFFPSLGKNGFNLPEAVFQNFTDFRINDYKIKNFNVDLVSENDIIKH 200 Query 65 NKVRYNFALQMGFDTVYA-GKNTTILKFSLQAQTINFTSLQELRDSFENNGNTLSTHLFW 123 +KVRY F ++ V + K+ F +T NF+ ++ + F N L + Sbjct 201 DKVRYAFEVKFNIALVLSINKSNVDFDFDFILKTDNFSDIENFNEIF-NRKPALQFRFYT 259 Query 124 KPVVEQLTTDGGNDLTNIAKTAIGESLFNLKVNLTDSIIDQSVLQQAQKSFEDKILDPFH 183 K V +L+ + G+D T IA + + L+++L SI L+ A++ F+ + + P + Sbjct 260 KINVHKLSFN-GSDSTYIANILLQDQFNLLEIDLNKSIYALD-LENAKERFDKEFVQPLY 317 Query 184 AERVEAKRIHDEEARRL-------EAERKRIAAELKAKEDEARRIREEHWAFYQSTRDVK 236 +R EAK +EE RR+ E ER RI ELK K ++ +R++E ++ ++ Sbjct 318 QKRREAKLAWEEEQRRIAEEQRRQEEERARILKELKEKAEKDKRVKEAQNNLQKALGNLD 377 Query 237 SFKEFWAK-----------RGKNVADKKQLIEALKLSFQAKQNPTF------------EL 273 +F F++ NV ++ L +AL++S+ + TF +L Sbjct 378 TFFNFFSSGQDRVLLGFDPNKYNVQTREGLFKALQISYSNFKTWTFYISLLGWKEGSVKL 437 Query 274 LTNAFRNAINWYYNHKKHDEEAKRTAFGSGG---------ISFAQSGLNGIFMPNWLRWE 324 L NA+ D++A + AFG G ++ G GI M +WLRW Sbjct 438 LKKPIWNAL--------RDDKAFQYAFGLGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWA 489 Query 325 LINRANIQLQ-LQNVK---VRENNFEVNGWGVPVSINWN-DHNNGINYRATTPWTYGFEI 379 L + L +NV+ + + N + + W P + N ++ +G ++ Y F++ Sbjct 490 LGYYTSFTLSPPKNVEANLIGDANDKKHIWISPHTFKLNREYGDGERFKGK---AYRFKL 546 Query 380 TMNYKGSYGLKGIYWTLANWGLGGIPPEWSGDMELKFQIDGKLANWITQKQDYPGSLFQF 439 +++++ L +WT+A G IP WSG + + + DG + + + P Sbjct 547 SISFELEGHLTAHWWTIA--FRGSIPGSWSGKLRVTHEFDGDVPYY--RLHTTPPQYRLT 602 Query 440 QNDKLLFTLHVVQRITV 456 + KLLF H +QR+T Sbjct 603 DDMKLLFVPHSIQRVTA 619 Lambda K H a alpha 0.319 0.135 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 54129845 Query= gi|13508250|ref|NP_110199.1| membrane export protein family [Mycoplasma pneumoniae M129] Length=260 Score E Sequences producing significant alignments: (Bits) Value gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 294 1e-99 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 226 1e-71 gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplas... 84.0 4e-20 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 294 bits (753), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 144/252 (57%), Positives = 191/252 (76%), Gaps = 3/252 (1%) Query 4 FKEYWQKQKKDVTDKKQLLEALKLSFAKEQNKTFAFLIKNFQDGISNYYPNDQEDQSEAA 63 FK+YW+ QKKDVTDK QL++ALK SFA ++NKTF+ LI +F S+YY N+++D+SE A Sbjct 235 FKDYWKNQKKDVTDKTQLIDALKTSFAADKNKTFSLLINSFTKATSDYYKNNKKDESENA 294 Query 64 KTAFGTQGIAFPQSGLKGIFMSEWLRKQLGEKAKINLDIKSLKVTDSKISPTIKWNKDIG 123 K AF +GI FP+ GL+G++MS+WLR +L I L++ S+K+ + + +PTI W K+ G Sbjct 295 KKAFSEKGIQFPRQGLEGLYMSDWLRGKLTSYTDIKLNLTSIKIENKENNPTIDW-KNNG 353 Query 124 IKRNQDKPYNFRFEIDIEYQGNYKLSWLEAIIAKFSGIPGEWKGKLNLKFIVDGDLSWEI 183 I+ Q PY F+FEIDI+YQG YKL+ L + A FSGIP W G++++KFIVDGDL + + Sbjct 354 IEFRQHYPYKFKFEIDIKYQGGYKLTGLFSWFAPFSGIPSSWNGEMDVKFIVDGDLDYNL 413 Query 184 VQKPDYPGSLFQFDDQKQQLLFKLHVWEKITVQEPEFMELIKSQNLHNLELRTESTKPPV 243 VQ DYPGSLFQF D QLLF LHV E+I VQ+ +FM+L+K QNLHNL+LR +TKPPV Sbjct 414 VQNTDYPGSLFQFKD--NQLLFTLHVKEQIKVQDGKFMDLLKQQNLHNLDLRNGATKPPV 471 Query 244 VDLASYLHYQLL 255 VDLASYLHY +L Sbjct 472 VDLASYLHYLVL 483 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 226 bits (576), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 124/256 (48%), Positives = 167/256 (65%), Gaps = 8/256 (3%) Query 4 FKEYWQKQKKDVTDKKQLLEALKLSFAKE--QNKTFAFLIKNFQDGISNYYPNDQEDQSE 61 FK YW + KDVT K L++ALK + A +N+TF+ LIK F G+ Y+ ++ D+ E Sbjct 395 FKFYWLTKGKDVTKKADLIDALKTAIATPAYRNRTFSLLIKGFASGVERYFNANKNDK-E 453 Query 62 AAKTAFGTQGIAFPQS--GLKGIFMSEWLRKQLGEKAKINLDIKSLKVTDSKISPTIKWN 119 K AFG +GI FP++ G+ G++MS +LR +L KAK +L++K +KV ++ + W Sbjct 454 LKKLAFGEKGIQFPRADAGVNGLYMSNFLRHELTSKAKFSLNLKDIKVENTVEDTQLYW- 512 Query 120 KDIGIKRNQDKPYNFRFEIDIEYQGNYKLSWLEAIIAKFSGIPGEWKGKLNLKFIVDGDL 179 KD GI Q PY F I I+Y G Y + W + AK GIP +W G++NL F+V+GDL Sbjct 513 KDNGIHLKQANPYKFNLNIKIKYNGWYNVHWWNWLPAKILGIPTDWSGEMNLTFVVNGDL 572 Query 180 SWEIVQKPDYPGSLFQFDDQKQQLLFKLHVWEKITVQEPEFMELIKSQNLHNLELRTEST 239 S EIV K DYPG+ FQF D K +LLF L V E+I V FM L+KSQNLHNL+L + +T Sbjct 573 S-EIVDKHDYPGTFFQFTD-KNELLFTLAVREQIKVDNNHFMGLLKSQNLHNLQLASGAT 630 Query 240 KPPVVDLASYLHYQLL 255 KPPVVDLASY H+ LL Sbjct 631 KPPVVDLASYFHFVLL 646 >gi|12044882|ref|NP_072692.1| hypothetical protein MG032 [Mycoplasma genitalium G-37] Length=666 Score = 84.0 bits (206), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 83/275 (30%), Positives = 131/275 (48%), Gaps = 44/275 (16%) Query 11 QKKDVTDKKQLLEALKLSFAKEQNKTFAFLIKNFQDG--------ISNYYPNDQEDQSEA 62 K +V ++ L +AL++S++ + TF + +++G I N +D+ A Sbjct 397 NKYNVQTREGLFKALQISYSNFKTWTFYISLLGWKEGSVKLLKKPIWNALRDDK-----A 451 Query 63 AKTAFGTQG---------IAFPQSGLKGIFMSEWLRKQLGEKAKINL----DIKSLKVTD 109 + AFG + P G +GI MS+WLR LG L ++++ + D Sbjct 452 FQYAFGLGPNTSEQQLGRVTLPGYGYEGIRMSDWLRWALGYYTSFTLSPPKNVEANLIGD 511 Query 110 SK------ISP-TIKWNKDIGI-KRNQDKPYNFRFEIDIEYQGNYKLSWLEAIIAKFSGI 161 + ISP T K N++ G +R + K Y F+ I E +G+ W IA I Sbjct 512 ANDKKHIWISPHTFKLNREYGDGERFKGKAYRFKLSISFELEGHLTAHWW--TIAFRGSI 569 Query 162 PGEWKGKLNLKFIVDGDLSWEIVQKPDYPGSLFQFDDQKQQLLFKLHVWEKITVQEPEFM 221 PG W GKL + DGD+ + + P DD K LLF H +++T E + Sbjct 570 PGSWSGKLRVTHEFDGDVPYYRLHTT--PPQYRLTDDMK--LLFVPHSIQRVTAVGNESI 625 Query 222 E-LIKSQNLHNLELRT-ESTKPPVVDLASYLHYQL 254 L++SQNLHNLE ++ E+T P +DL SY+ Y + Sbjct 626 NGLLRSQNLHNLERQSYEATAP--IDLISYMLYAI 658 Lambda K H a alpha 0.316 0.135 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27223803 Query= gi|13508251|ref|NP_110200.1| membrane export protein family [Mycoplasma pneumoniae M129] Length=154 Score E Sequences producing significant alignments: (Bits) Value gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycopla... 134 1e-39 gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplas... 110 1e-30 >gi|13277520|ref|NP_077806.1| hypothetical protein MG288m [Mycoplasma genitalium G-37] Length=485 Score = 134 bits (336), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 68/141 (48%), Positives = 97/141 (69%), Gaps = 3/141 (2%) Query 1 MRYSFVIQWDFETVYTGVNSTTNLAFSVKAMTTNFANLQELQDSLVLRGQNLTTQLFWKP 60 +RYSF I+ DFE Y G N+T NL F +KA T+NF NLQELQ+S G +L TQLFWKP Sbjct 64 IRYSFEIKMDFEVDYEGGNNTVNLQFDLKAQTSNFLNLQELQNSF--NGNDLNTQLFWKP 121 Query 61 TVKRLVLGNNNDLTTVAKAAVGDNLFTTQANLTKSVLD-QTVLKEAESRFEATVLKPFIE 119 + +LV N NDLT++AK AV D+LF + N+ SVL L A+++FE +++PF + Sbjct 122 LINKLVDKNQNDLTSIAKTAVSDSLFLSNTNIFNSVLKIDEQLDLAKTKFEKEIIEPFKK 181 Query 120 ARQKALAEHQAHQKVLEEQRQ 140 R+KA A+++ Q++L E+R+ Sbjct 182 EREKAKADYEEQQRILAEERR 202 >gi|12044948|ref|NP_072758.1| hypothetical protein MG096 [Mycoplasma genitalium G-37] Length=650 Score = 110 bits (275), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 61/129 (47%), Positives = 85/129 (66%), Gaps = 8/129 (6%) Query 1 MRYSFVIQWDFETVYTGV-NSTTNLAFSVKAMTTNFANLQELQDSLVLRGQNLTTQLFWK 59 +RY+F +Q F+TVY G N+ NL F++KA T NFANLQ+LQ++ V G +L+TQLFW Sbjct 210 VRYNFEMQMQFQTVYVGGGNTVINLDFTLKAQTVNFANLQDLQNTFVKVGNDLSTQLFWI 269 Query 60 PTVKRLVLGNNNDLTTVAKAAVGDNLFTTQANLTKSVLD----QTVLKEAESRFEATVLK 115 PTV +L NDLT +AK +G++ F T NL KSV++ Q ++K+A FE VL Sbjct 270 PTVNKLTDNAGNDLTHIAKTVIGESFFQTNVNLAKSVIEYDKVQPLVKQA---FEERVLT 326 Query 116 PFIEARQKA 124 PF + R+ A Sbjct 327 PFKKEREAA 335 Lambda K H a alpha 0.314 0.126 0.338 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13234767 Query= gi|13508252|ref|NP_110201.1| hypothetical protein MPN513 [Mycoplasma pneumoniae M129] Length=150 ***** No hits found ***** Lambda K H a alpha 0.320 0.135 0.376 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12653019 Query= gi|13508253|ref|NP_110202.1| hypothetical protein MPN514 [Mycoplasma pneumoniae M129] Length=120 ***** No hits found ***** Lambda K H a alpha 0.318 0.137 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8813340 Query= gi|13508254|ref|NP_110203.1| DNA-directed RNA polymerase beta' chain [Mycoplasma pneumoniae M129] Length=1290 Score E Sequences producing significant alignments: (Bits) Value gi|12045199|ref|NP_073010.1| DNA-directed RNA polymerase, subunit... 2457 0.0 >gi|12045199|ref|NP_073010.1| DNA-directed RNA polymerase, subunit beta' (rpoC) [Mycoplasma genitalium G-37] Length=1292 Score = 2457 bits (6368), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1192/1289 (92%), Positives = 1246/1289 (97%), Gaps = 0/1289 (0%) Query 2 TKRNKKNNKLYKNIKAIKLSIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEAIFG 61 T+RNK+NNKLYKNIKAIKLSIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEAIFG Sbjct 4 TRRNKRNNKLYKNIKAIKLSIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEAIFG 63 Query 62 PVKDYECACGKFKKIKYRGVRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKELPSP 121 PVKDYECACGKFKKIKYRGVRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKELPSP Sbjct 64 PVKDYECACGKFKKIKYRGVRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKELPSP 123 Query 122 SKISLVLNISYKEVEQVLYFVNYIVLDTGKIKDPKIMPFKFKEVLDLAGKGSLTTRQKMR 181 SKISLVLNISYKEVEQVLYFVNYIVLDTGKIKD KIMPFKFKEVLDL GKGSL+TRQKMR Sbjct 124 SKISLVLNISYKEVEQVLYFVNYIVLDTGKIKDDKIMPFKFKEVLDLTGKGSLSTRQKMR 183 Query 182 RVIGYIFRNLIKNRSSEDYRKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGAEAI 241 RVIGYIFRNLIK++SSEDYRKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGAEAI Sbjct 184 RVIGYIFRNLIKSKSSEDYRKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGAEAI 243 Query 242 LELLNKIDLNYEFSKLNDALRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMILHT 301 LELLNKIDLN EFS+LNDALRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMILHT Sbjct 244 LELLNKIDLNLEFSRLNDALRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMILHT 303 Query 302 VPVIPPDIRPIIQLDGAKFTTSDINNFYRRVIIRNDRLRRILEDGTVPAIVVNNEKRLLQ 361 VPVIPPDIRPIIQLDGAKFTTSDINNFYRRVIIRNDRLRRILEDGTVP+IVVNNEKRLLQ Sbjct 304 VPVIPPDIRPIIQLDGAKFTTSDINNFYRRVIIRNDRLRRILEDGTVPSIVVNNEKRLLQ 363 Query 362 ESVDALFDNSSRHKPALSKDKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVVGPE 421 ESVDALFDNSSRHKP+LSKDKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVVGPE Sbjct 364 ESVDALFDNSSRHKPSLSKDKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVVGPE 423 Query 422 LKMYEVGIPALMILKLFKPFIIHGLINKFDSNGNEIRPIASSIRQAEDMIKNQDDLIWGI 481 LKMYEVGIPALMILKLFKPFIIHGLINKFD NGNEIRPIA+SIRQAEDMIKNQDDLIWGI Sbjct 424 LKMYEVGIPALMILKLFKPFIIHGLINKFDENGNEIRPIAASIRQAEDMIKNQDDLIWGI 483 Query 482 VYDVIKDRPVLLNRAPTLHRLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAVHVP 541 VYDVIKDRPVLLNRAPTLHRLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAVHVP Sbjct 484 VYDVIKDRPVLLNRAPTLHRLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAVHVP 543 Query 542 LSENAVNEARAILLASKHILGLKDGRPIVTPTQDMVLGNYYLTTERKGQTGEGIIFGTVH 601 LSENAVNEARA+LLASKHILGLKDGRPIVTPTQDMVLGNYYLTTERKGQ GEGIIF TV+ Sbjct 544 LSENAVNEARAVLLASKHILGLKDGRPIVTPTQDMVLGNYYLTTERKGQLGEGIIFSTVY 603 Query 602 EARAAYEAGKVHLHAIVGISTKAFPNKHFEAQGTLITTVGKIIFNDVLGDNIPYINEGEF 661 EARAAYE+ KVHLHAIVGISTKAFPNK F QGTLITTVGKIIFNDVLG+N+PYIN+GEF Sbjct 604 EARAAYESQKVHLHAIVGISTKAFPNKKFACQGTLITTVGKIIFNDVLGNNVPYINDGEF 663 Query 662 DEHACPQKFIVPPSGDVRAAIAAHQVLPAFGKKVISKLIDLLYTVVEFKDLPRILENIKA 721 DE+ACP+KFIV DVR +I HQ++PAF KKVISKLIDLLY ++EFKDLP+ L+NIKA Sbjct 664 DENACPEKFIVKQGEDVRQSILKHQIIPAFSKKVISKLIDLLYLLLEFKDLPKTLDNIKA 723 Query 722 LGFKYSTHSSTTVSVFDIPKYSNKQQYFDEADQQVLKYKQFYNKGLLTDDERYKRVVKLW 781 LGFKYST SSTTVSVFDIPKY+NKQ YFD ADQQVLKYKQFYNKGLLTDDERYKRVVKLW Sbjct 724 LGFKYSTFSSTTVSVFDIPKYTNKQNYFDSADQQVLKYKQFYNKGLLTDDERYKRVVKLW 783 Query 782 NGVKEKVSSEIQDLIKREEYRDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNYERNN 841 N VKEKVS EIQ+LIK+E+YRDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNYERNN Sbjct 784 NNVKEKVSDEIQNLIKQEQYRDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNYERNN 843 Query 842 QSKIIKDTIEVPIKHSFLEGLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHE 901 QSKIIKDTIEVPIKHSF EGLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHE Sbjct 844 QSKIIKDTIEVPIKHSFFEGLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHE 903 Query 902 LIINHDDCGTRKGIVVEAIVETKTRSLVESLFDRIVNRYTIGPILDPETKAEIVPANSLI 961 LIINHDDCGTRKGIVVEAIVETKT+SL+ESLFDRIVNRY+I PI+DPET+ IV ANSLI Sbjct 904 LIINHDDCGTRKGIVVEAIVETKTKSLIESLFDRIVNRYSITPIVDPETQKTIVEANSLI 963 Query 962 TQELAKQICATSIKQVLVRSVIYCERENGVCQYCFGVDLSTGKLVELGTAVGVIAAQSIG 1021 T +LAKQICATSIK+VLVRSVIYCERENG+CQYCFG+DLSTGKLVELGTAVGVIAAQSIG Sbjct 964 TTQLAKQICATSIKEVLVRSVIYCERENGICQYCFGIDLSTGKLVELGTAVGVIAAQSIG 1023 Query 1022 EPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEVVAPKDYERCVISEVKGVVKSITTTQ 1081 EPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEVV PKD+E+ VISEVKG VKSITT Q Sbjct 1024 EPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEVVTPKDFEKAVISEVKGTVKSITTVQ 1083 Query 1082 NAQEVLIESSVDERTYSIPFSAQLRVKVGDAVELGSKITEGSIDIRQLLRVAGIQRVRQY 1141 NAQEV+I+S+VDER Y+IPFSAQ+RV VGD V GSKITEGS+DI+QLLR+AGIQRVRQY Sbjct 1084 NAQEVVIKSNVDERIYTIPFSAQIRVHVGDQVSPGSKITEGSVDIKQLLRIAGIQRVRQY 1143 Query 1142 MIVEIQKVYRIQGIEIADKYVEIIIRQLTSLLQVTDAGSSNLFVGQLVHSHHLNELNKSL 1201 MIVEIQKVYRIQGI+IADKYVEIIIRQLT+LLQVTDAG+SNLFVGQLVHSH+LNELNKSL Sbjct 1144 MIVEIQKVYRIQGIDIADKYVEIIIRQLTNLLQVTDAGNSNLFVGQLVHSHYLNELNKSL 1203 Query 1202 LLSGKMPVIAINQVFGIDEAASKSNSFLSAASFQDTKKILTDAAVKTQVDYLLGLKENVI 1261 LL+GKMPVIAINQVFGIDEAASKSNSFLSAASFQDTKKILTDAAVK QVDYLLGLKENVI Sbjct 1204 LLAGKMPVIAINQVFGIDEAASKSNSFLSAASFQDTKKILTDAAVKNQVDYLLGLKENVI 1263 Query 1262 IGGKIPAGTGFLTDEELAYLGAKTVQEEY 1290 IGGKIPAGTGFLTDEEL +LG+KTV EEY Sbjct 1264 IGGKIPAGTGFLTDEELTFLGSKTVAEEY 1292 Lambda K H a alpha 0.319 0.136 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 165300525 Query= gi|13508255|ref|NP_110204.1| RNA polymerase beta subunit [Mycoplasma pneumoniae M129] Length=1391 Score E Sequences producing significant alignments: (Bits) Value gi|12045200|ref|NP_073011.1| DNA-directed RNA polymerase, subunit... 2460 0.0 >gi|12045200|ref|NP_073011.1| DNA-directed RNA polymerase, subunit beta (rpoB) [Mycoplasma genitalium G-37] Length=1390 Score = 2460 bits (6375), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1194/1391 (86%), Positives = 1298/1391 (93%), Gaps = 1/1391 (0%) Query 1 MSQKPSFFQKKYSPTATRRYYGKIATDFVQPNLADIQIRSYQTFLDHDLENLIAAYFPIK 60 MSQK +FFQK+YSPTATRRYYGKI T+F+QPNLADIQI+SYQ FLDHDLE LIA+YFPIK Sbjct 1 MSQKSNFFQKRYSPTATRRYYGKIETNFIQPNLADIQIKSYQKFLDHDLEKLIASYFPIK 60 Query 61 SPNDRYTINFKGLRRTAPERNEAQSRSESKTYEIGIYADLELIDSATGTIKKPRKSKKNS 120 SPNDRYTINF+GL RT PER+EAQSR++SKTYE+GIYADLEL+D+ GT+KK RKSKKN Sbjct 61 SPNDRYTINFRGLHRTEPERDEAQSRAQSKTYEVGIYADLELVDNDKGTVKKARKSKKNI 120 Query 121 ATSSVDGVFLTNLPLITRDGVFIVNGIEKFVIAQITRSPGIYMLTKSQLKLSSSRKRVQE 180 A S+ +GVFL ++PLIT DGVFI+NGIEKFVI+QITRSPGIYMLTKSQLKLS+SRKRVQE Sbjct 121 A-SNTNGVFLASMPLITHDGVFIINGIEKFVISQITRSPGIYMLTKSQLKLSNSRKRVQE 179 Query 181 GYVCEVLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGMSGKEI 240 GYVCEVLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFG++ +EI Sbjct 180 GYVCEVLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGLNNREI 239 Query 241 LKVFKNNEFITRSLEAEVYNAKDFLNNVDPEIKNLLREFRDGKTDLRRKGIASDQKIRSL 300 LK+FKNNEFI RSLEAE+YNAKDFL+NVDPEIKNLL+EFRDGKTDLRRKGIASDQK+RSL Sbjct 240 LKIFKNNEFIKRSLEAEIYNAKDFLSNVDPEIKNLLKEFRDGKTDLRRKGIASDQKLRSL 299 Query 301 VSDYVLLEKEHKALSEAKPNDPKVGQLEADMDELMDKIITERAAKHIVHELSISLRGLEN 360 V++YV LEK++ AL + PND + LE +M+ MD +ITERAAKHIV+ELSISLR +EN Sbjct 300 VNEYVTLEKQYNALKQTSPNDSSLTALELEMENKMDSVITERAAKHIVNELSISLRDIEN 359 Query 361 TDECPENSYHALLCSRFFRQRRYNLSAAGRYKVSRKLRITERIYQKTLACDLHLKNGELL 420 T+EC E S+HALLC+RFFR +RYNLS AGRYKVSRKLR+TERIYQKTLACDL LK+G+LL Sbjct 360 TEECHEVSFHALLCARFFRNKRYNLSNAGRYKVSRKLRLTERIYQKTLACDLFLKDGKLL 419 Query 421 LKKGTLLVKEEIDKIKQAAQNNQIDFVQKIKLTTDGSAVNLSPESLLYESLDVYVNNDNF 480 LKKGTLL+KEEIDKIKQAA+NN+I FV K++LTTDG AV+L+ ESL YE++DVY+ NDN Sbjct 420 LKKGTLLLKEEIDKIKQAAKNNEISFVNKMQLTTDGKAVDLAKESLFYETIDVYITNDNL 479 Query 481 DVSVPVVGIHNDNDLNKAITLSDFIASISYVINIPSAIGKYDDIDHLGNKRVKLINELIS 540 VSVPV+GIHN+NDLNKA+TLSDFIASISYVIN+P IGKYDDIDHLGNKRVKLINELI+ Sbjct 480 SVSVPVIGIHNENDLNKAMTLSDFIASISYVINLPYGIGKYDDIDHLGNKRVKLINELIT 539 Query 541 SRLESGITRMERFLKEKLTIADGVNRGQQINEEGQVIEQAEKKELTIKSLINSKPIQIVI 600 ++LESG TRMERFLKEKLTIADGVNRGQQINEEGQVIEQ EKKELTIKSLINSKPIQIVI Sbjct 540 AKLESGFTRMERFLKEKLTIADGVNRGQQINEEGQVIEQGEKKELTIKSLINSKPIQIVI 599 Query 601 RDFFNTHQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIE 660 +DFFNTHQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIE Sbjct 600 KDFFNTHQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIE 659 Query 661 TPEGMNIGLIMSLASFAKIDENGFLMAPYRKIKNGVITDEVEYLTALREDEHIIAEISSL 720 TPEGMNIGLIMSLASFAKIDENGFLMAPYRKIK GVITDEVEYLTALREDEHIIAEISSL Sbjct 660 TPEGMNIGLIMSLASFAKIDENGFLMAPYRKIKAGVITDEVEYLTALREDEHIIAEISSL 719 Query 721 VNIDENNKILDKEIIGRYRSMQGLYDPSKIDYIDVAPHQVVSIGSSLIPFLENDDSARAL 780 VNI +NKILDKEIIGRYRSMQGLYDP KIDYIDVAPHQVVSIGSSLIPFLENDDSARAL Sbjct 720 VNISNDNKILDKEIIGRYRSMQGLYDPLKIDYIDVAPHQVVSIGSSLIPFLENDDSARAL 779 Query 781 MGTNMQRQAYPLIKPYAPVVGTGQEYKIARDSGLTMLAPCSGTVKYVDNSKITIESDSGE 840 MGTNMQRQAYPLIKPYAP VGTGQE+KIA DSGLTM +PCSG V YVDNSKI I SDS + Sbjct 780 MGTNMQRQAYPLIKPYAPAVGTGQEHKIASDSGLTMSSPCSGVVSYVDNSKIIITSDSSK 839 Query 841 QHTLDLIKFERSNQNTCYNHVPLVEKGQRVTKDEVIADGPAVNKSELSLGQNVLVAFTTW 900 + T++L+KFERSNQNTCYNH P+VE GQRV KDE+I DGPAVNKSEL+LGQNVLVAFTTW Sbjct 840 KETVNLVKFERSNQNTCYNHKPIVEIGQRVNKDEIIVDGPAVNKSELALGQNVLVAFTTW 899 Query 901 NGYNYEDAIVISERLVKDDVLTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDE 960 NGYNYEDAIVISERLVK+D+LTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDE Sbjct 900 NGYNYEDAIVISERLVKEDILTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDE 959 Query 961 NGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKLPHGGDGI 1020 NGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLK+ HGGDGI Sbjct 960 NGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKVSHGGDGI 1019 Query 1021 VSCVKRFSIANGNELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADMPH 1080 VS VKRFSIANG+ELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVP+ DMPH Sbjct 1020 VSAVKRFSIANGDELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPIEDMPH 1079 Query 1081 LEDGTPVDILLNPLGVPSRMNIGQIFEMHLGYAAHNLAKRMLISACFDDKKAQALSTEIN 1140 LEDGTPVDILLNPLGVPSRMNIGQIFE HLGYAAH LA R LIS+CFD KA+ + EIN Sbjct 1080 LEDGTPVDILLNPLGVPSRMNIGQIFETHLGYAAHKLAVRSLISSCFDQNKAKEFAIEIN 1139 Query 1141 QPQYKLDRLITGLKAQITNRGLKDEQAALAQLNNGDIALVLKEIGMSFDDLHFKVATPIF 1200 QPQ +++RLI GLK QI +R +K E+ AL +L+N DI+LVLKEIGMSFDDL +K+ATPIF Sbjct 1140 QPQARVERLIKGLKNQINDRNIKSEKEALEKLDNSDISLVLKEIGMSFDDLIYKIATPIF 1199 Query 1201 QGVNFQDLQDIMDEAGLKPAETHGKFKLIDGRTGLPFEKPISLGIMYIMKLNHMVDDKIH 1260 QGVNF DLQD+M EAGL P + GKFKLIDGR+G+PFE+PISLGIMY+MKLNHMVDDKIH Sbjct 1200 QGVNFLDLQDVMQEAGLDPQKNQGKFKLIDGRSGMPFERPISLGIMYMMKLNHMVDDKIH 1259 Query 1261 ARAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNKA 1320 ARAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRN+A Sbjct 1260 ARAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNRA 1319 Query 1321 YAAIVKGAAFPEPGIPESFKLLTKELQGLALSVSFIYDDNTQQDSNNVSILQADGEQDDL 1380 YAAIVKGAAFPEPGIPESFKLLTKELQGLALSVSFIYDDNTQQDSNNVSILQ+DGEQD+ Sbjct 1320 YAAIVKGAAFPEPGIPESFKLLTKELQGLALSVSFIYDDNTQQDSNNVSILQSDGEQDEF 1379 Query 1381 FNDFEFDTEGY 1391 FNDFEFDTEGY Sbjct 1380 FNDFEFDTEGY 1390 Lambda K H a alpha 0.316 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 178339469 Query= gi|13508256|ref|NP_110205.1| suggest reductase homologue [Mycoplasma pneumoniae M129] Length=166 Score E Sequences producing significant alignments: (Bits) Value gi|12045201|ref|NP_073012.1| hypothetical protein MG342 [Mycoplas... 253 2e-89 >gi|12045201|ref|NP_073012.1| hypothetical protein MG342 [Mycoplasma genitalium G-37] Length=168 Score = 253 bits (646), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 119/163 (73%), Positives = 137/163 (84%), Gaps = 0/163 (0%) Query 4 KPLILLLANSKNSINRKFAKALEQQLNAELIELVDYQVDFYCEDLEKDHFPEKIKSLVRK 63 K LIL+L+NS++SINRKFA L+ L+ ELIEL DYQVDFY DLE +FP+KIK+LVRK Sbjct 6 KSLILMLSNSQHSINRKFANELKHSLSCELIELKDYQVDFYSVDLEATNFPDKIKTLVRK 65 Query 64 LHDHKTLIFVTPEHNGFVPAFAKNTIDWMTRDTQYGKNQFLKELDGIICCVTPAAKSGGK 123 + +H LIFVTPEHNGF+PAFAKN IDWMTRD QYG+NQFLK L+G+ICCVTPA GGK Sbjct 66 IKEHSNLIFVTPEHNGFIPAFAKNIIDWMTRDEQYGRNQFLKGLNGVICCVTPATAGGGK 125 Query 124 TVLELLTKFFSFSGLNVKGAVLVNGYHDGFDFQPFITDVQKLI 166 TVLELL KF SFSGLNVKG VLVNGYH+ FDF+PFI V+KLI Sbjct 126 TVLELLDKFLSFSGLNVKGTVLVNGYHENFDFKPFIEQVKKLI 168 Lambda K H a alpha 0.322 0.139 0.412 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14785206 Query= gi|13508257|ref|NP_110206.1| hypothetical protein MPN518 [Mycoplasma pneumoniae M129] Length=348 Score E Sequences producing significant alignments: (Bits) Value gi|12045202|ref|NP_073013.1| hypothetical protein MG343 [Mycoplas... 339 9e-118 >gi|12045202|ref|NP_073013.1| hypothetical protein MG343 [Mycoplasma genitalium G-37] Length=346 Score = 339 bits (870), Expect = 9e-118, Method: Compositional matrix adjust. Identities = 180/341 (53%), Positives = 237/341 (70%), Gaps = 1/341 (0%) Query 6 INEQTLVNEQRLLAYDCFQNTNKVGLLSALEYLDFVNHLVKSNQIKYLLVPSASQTVYQH 65 IN+QTLVNEQRLLAYD FQN+NKVGLLS L+YLDFVN LV+S ++ YLLV S +YQ Sbjct 5 INDQTLVNEQRLLAYDFFQNSNKVGLLSTLQYLDFVNFLVRSKKVNYLLVNKVSLPIYQK 64 Query 66 VFFDHFRFLSFDNNLLSGFGLAIRLHKEAETVFMLVEKTKQTETEIKKLLEAVKQFSGLK 125 ++FD+F FL FDNNL S FGLA+R + +TVF VEKTK T+TEI K L+ +K F GLK Sbjct 65 IYFDNFPFLGFDNNLWSAFGLALRNKSQNDTVFAFVEKTKNTDTEINKFLKILKTFKGLK 124 Query 126 LVVLLVNSPFENKRTKLSYEIVKIIKKHGYQYKRYCRKNFEKKFFNTWNHQKRKQKTKNN 185 +V LL+NSP E KLS ++K IKK +++ Y ++F+ KFF ++K K+KNN Sbjct 125 IVFLLINSPEEKTTIKLSDSLIKEIKKQKIKHEVYSLRSFQNKFFKLVRKLEKKHKSKNN 184 Query 186 LFFVELNSQFAFGTSMANSNSFDLSFTSFKERFNTENNLDIDVHFNVPHKYLLKNLESIK 245 + FVELN F + T+ SN D SFTSF++RF E L I HF +PHKYLLKNLE+IK Sbjct 185 VMFVELNGVFGYETNFEKSN-IDFSFTSFQDRFTIEKKLKITSHFILPHKYLLKNLENIK 243 Query 246 HHLQIDNNTIWKQAFINFAGQLLLYFENLQVFAQEASTLQVNAIVIKQDAYFIVEVMKGY 305 H N IW+Q +F Q LL++ LQVF+ + L+V+A++ + + IVE+MKG+ Sbjct 244 HPNFEQKNLIWQQTVKDFNQQFLLHYSKLQVFSNSPTKLKVDALIFDLEFHLIVEIMKGF 303 Query 306 NYDNNCICLLEANKDQNVGLTTASTNTLIGDIKQYEPCFFI 346 N+D NCICLLE NK+QN L T S +T + DIK Y+ C+F+ Sbjct 304 NFDENCICLLEGNKEQNPNLPTVSLDTKVADIKTYQGCYFL 344 Lambda K H a alpha 0.322 0.135 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39213505 Query= gi|13508258|ref|NP_110207.1| triacylglycerol lipase (lip) 3 [Mycoplasma pneumoniae M129] Length=272 Score E Sequences producing significant alignments: (Bits) Value gi|12045203|ref|NP_073014.1| lipase/esterase, putative [Mycoplasm... 377 5e-135 gi|12045185|ref|NP_072996.1| lipase/esterase, putative [Mycoplasm... 69.3 1e-15 >gi|12045203|ref|NP_073014.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length=273 Score = 377 bits (968), Expect = 5e-135, Method: Compositional matrix adjust. Identities = 183/273 (67%), Positives = 218/273 (80%), Gaps = 1/273 (0%) Query 1 MRDKVNINTVDISQLEVFFQPAKKPAKQTIVFAHGFSVHHSYFKSFSETLVDYDYYAPLW 60 M+ ++N +DIS+LEVFFQPAKK KQT+VFAHGFSV HSYF+SF +TL DYDYYAPLW Sbjct 1 MKRFSDLNQIDISKLEVFFQPAKKTKKQTVVFAHGFSVFHSYFQSFYKTLTDYDYYAPLW 60 Query 61 PGHNHHGFTDKELSPIHYAHLLVAWIEKQDLENIVLIGHSMGGAVASYALQFLKPQRVEK 120 PGHN +GF KELSPIHY LL A+IE +DLENIVLIGHSMG AV SYA+ L +RVEK Sbjct 61 PGHNVNGFDYKELSPIHYGELLAAFIENKDLENIVLIGHSMGAAVCSYAMNLLNAKRVEK 120 Query 121 LVLLAPLSYSNLLNYYKIKKAFKK-KDEKLSYFKRMFQPKFPDLQNDGQWQMELDKHTAM 179 L+LLAPLSY NLL Y+KIK +FKK K E+++ FK MFQ KF +L ++ W+ EL KH+ M Sbjct 121 LILLAPLSYCNLLRYFKIKSSFKKDKAERMANFKAMFQTKFSNLTDENSWENELSKHSKM 180 Query 180 CKKLTFQIFKELSRLNSAYKTITIPAFLLLAQHDDFMPTKATLNYFNRFLIKKGNLQSGV 239 KKL+ I KEL LN YK + +P FL+LAQ+D FMPTK TL+YFN++LIK NLQS V Sbjct 181 AKKLSNNILKELPVLNKTYKNLKLPVFLVLAQNDLFMPTKLTLSYFNKYLIKNNNLQSSV 240 Query 240 ILHSQHQMFNSKHESFCKAMHDILKHNKLSKIY 272 IL+S+HQMFNSK+ESFCKAM DIL HNKLSKIY Sbjct 241 ILNSEHQMFNSKYESFCKAMDDILNHNKLSKIY 273 >gi|12045185|ref|NP_072996.1| lipase/esterase, putative [Mycoplasma genitalium G-37] Length=268 Score = 69.3 bits (168), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 109/224 (49%), Gaps = 33/224 (15%) Query 19 FQPAKKPAKQTIVFAHGFSVHHSYFKSFSETLV-----DYDYYAPLWPGHNHHGFTDKE- 72 F+P K+ K +F HGF S + SFS + ++ +PGH + TD + Sbjct 16 FKPKKR--KNVFIFLHGFG---SEYASFSRIFSLFKKKKWPFFTFNFPGHGDNESTDTDQ 70 Query 73 LSPIHYAHLLVAWIEKQDLENIVLIGHSMGGAVASYALQFLKPQRVEKLVLLAPLSYSNL 132 L H+ L+ +I ++ L N++LIGHSMGGAVA + + P +++ L+L+AP++ ++ Sbjct 71 LKLNHFVDLVCDFIVQKKLNNVILIGHSMGGAVAVLVNKVI-PLKIKALILVAPMNQTSF 129 Query 133 LNYYKIKKAFKKKDEKLSYFKRMFQPKFPDLQNDGQWQMELDKHT--AMCKKLTFQ-IFK 189 + KK ++FKR D + + L K A K+ TF+ ++ Sbjct 130 --------SVNKKRILDTFFKRN-NSNHKDFVEHEEKRKSLLKIAINAFKKRTTFKTLYS 180 Query 190 EL--------SRLNSAYKTI-TIPAFLLLAQHDDFMPTKATLNY 224 ++ L AY+ I P ++L +D PTKA+++Y Sbjct 181 DMVQNAKYGNDSLERAYEMIGNKPTLVILGANDIVTPTKASVDY 224 Lambda K H a alpha 0.323 0.136 0.413 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28934199 Query= gi|13508259|ref|NP_110208.1| isoleucine-tRNA ligase [Mycoplasma pneumoniae M129] Length=861 Score E Sequences producing significant alignments: (Bits) Value gi|12045204|ref|NP_073015.1| isoleucyl-tRNA synthetase (ileS) [My... 1233 0.0 gi|12045191|ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycopl... 163 3e-43 gi|12045122|ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycop... 79.0 1e-16 >gi|12045204|ref|NP_073015.1| isoleucyl-tRNA synthetase (ileS) [Mycoplasma genitalium G-37] Length=895 Score = 1233 bits (3191), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/830 (70%), Positives = 704/830 (85%), Gaps = 0/830 (0%) Query 1 MNLKKTLLMPQTAFEMQGKLTTKEQQFQAFWQSKRIYQKLHRQNKDKPQKILHDGPPYAN 60 M+LKKTLLMP+T+F MQ L+T E+ F FW+ K+++QKL +QNK K KILHDGPPYAN Sbjct 1 MDLKKTLLMPKTSFAMQANLSTSEKNFHDFWKDKKVFQKLKKQNKGKQIKILHDGPPYAN 60 Query 61 GNIHVGHALNKILKDFVLRSWNLQGFGTVFIPGWDCHGLPIEHAVSKKDPQHYASLSLSE 120 G+IHVGHALNKILKDF+LRSW +G+ VFIPGWDCHGLPIEHAVSKK+P Y++LS E Sbjct 61 GSIHVGHALNKILKDFILRSWLYEGYDVVFIPGWDCHGLPIEHAVSKKNPSSYSNLSTVE 120 Query 121 KRDLCKQFALSQIAIQKAQFQRLGLLNDFSKYYKTIDESFQQNELDLFLQAVKKDLIFQA 180 KR LC QFALSQIA+QK QFQRLGLLNDF Y TIDESFQ EL+LFLQA+KK LIFQ Sbjct 121 KRKLCHQFALSQIAVQKEQFQRLGLLNDFQNCYYTIDESFQFKELELFLQAIKKGLIFQD 180 Query 181 LKPTYWSPVSRTSLAEAEIEYKEVKTIGLYLTFTVVQSAVLNSGTKLLVWTTTPWTLPTN 240 LKPTYWSP+SRTSLAEAEIEYKEV +I LYLTF V +S L+ LLVWTTTPWTLPTN Sbjct 181 LKPTYWSPISRTSLAEAEIEYKEVNSIALYLTFKVSKSDFLDENANLLVWTTTPWTLPTN 240 Query 241 QAIAVHPQFEYLLFTYNNEQYVVLASLFESLKTKFGWTDAIQVQTISGSQLQNTTYKHCL 300 QAIA+HP F+YLLF YN +++V+L LFE K WT+AI+++ GS L+N++Y HC Sbjct 241 QAIAIHPDFDYLLFEYNQQKFVILEKLFEVFTNKLNWTNAIKLKKFKGSNLKNSSYSHCF 300 Query 301 YDKVNPVLLGNHVLCNEGTGLVHTSPAYGLDDFYLCKQNKLNEALVSLDEKGVFNDTLND 360 Y+KV PVL+G HV+ NEGTG+VH+SPA+G+DDFYLC++NK+ E L+S+DEKGVFN+ LND Sbjct 301 YNKVLPVLMGIHVVDNEGTGIVHSSPAFGIDDFYLCQKNKIKEVLISIDEKGVFNNLLND 360 Query 361 PVLTGLFYLKANDVIIERLKQHHNFVFSESFLHREPHDWRSKTPVIYRASKQLFIKTKSI 420 L FYLKAND+II RLKQ+++F+FSE HREPHDWRSKTPVIYRASKQLFIKTKSI Sbjct 361 KELENCFYLKANDLIINRLKQNNSFIFSEVISHREPHDWRSKTPVIYRASKQLFIKTKSI 420 Query 421 QSKLKRQIKRVKFVNNKNKERLQEMLLQRAEWCISRQRVWGLPIPLIYADNQPLLDVTTI 480 + +LK+QI +V F+N+KN+ RL+EMLLQR EWCISRQRVWGLPIP++YA+N+PLLD +TI Sbjct 421 KKQLKKQINQVNFLNSKNQLRLKEMLLQRDEWCISRQRVWGLPIPIVYANNKPLLDFSTI 480 Query 481 KYTIQQLKKYGIDSWFEKDINFFLNPKKIQPGVEYKKETDTLEVWFDSGSTYNVLISNKL 540 +YTI+QLKK+GIDSWFEKD+ FL P K + V+Y KE DTL+VWFDSGS+YNVL NK Sbjct 481 QYTIKQLKKHGIDSWFEKDVTCFLKPDKTKKWVKYHKEIDTLDVWFDSGSSYNVLEINKY 540 Query 541 NFPADLYLEGSDQYRGWFNSSASCGIIQTDQLPFKSLISHGFTLDEHGNKMSKSLGNVVD 600 ADLY+EGSDQYRGWFNSS++CGIIQ D +PFKSL+SHGFTLDE+GNKMSKSLGN+VD Sbjct 541 GSIADLYIEGSDQYRGWFNSSSNCGIIQNDLIPFKSLVSHGFTLDENGNKMSKSLGNIVD 600 Query 601 PLKLCDQYGADILRLWVTNVDWQVDNRIGDNIIKQIVEQYRRIRNSLLRFILGNLNHFNF 660 PLK+CDQYGADILRLWV N DWQ+DN+IG NI+KQ+ EQYRRIRNSLLRFILGN+N FNF Sbjct 601 PLKICDQYGADILRLWVANTDWQIDNKIGVNILKQVAEQYRRIRNSLLRFILGNINGFNF 660 Query 661 GEMKDYRFALEDKIVIHKTNALVQELHQWLKQYNFLNCLKAINKFVLWLSGWYFEIIKDT 720 M DY+F+LEDKIVIHKTN+LV+++ ++L++YNFL CLK INKFVLWLS WYFEIIKDT Sbjct 661 TSMDDYKFSLEDKIVIHKTNSLVEQIEKFLEKYNFLGCLKVINKFVLWLSSWYFEIIKDT 720 Query 721 LYCDAKTNPNRVAKQAVLNYIFTQLIGFLNIFIPHTAEDAWQNYLLPKKPVSVNLFAGPA 780 LYCDAK NPNR+AKQAVLNYIFTQLI FLNIFIPHTAEDAW+NY KKP+SVNLF P Sbjct 721 LYCDAKNNPNRLAKQAVLNYIFTQLISFLNIFIPHTAEDAWKNYSFNKKPISVNLFTKPT 780 Query 781 MFKVANVKGLDRLHESFSAIKDRAYAAIEQARQNGVITKNNQVVLTLGVD 830 +FKVAN K L ++++F++IK+ A+ IE+ R+ G+I+KNNQ+ LT+G++ Sbjct 781 VFKVANSKNLGNIYKTFTSIKNAAFKEIEKLRKEGLISKNNQIELTVGIN 830 >gi|12045191|ref|NP_073002.1| valyl-tRNA synthetase (valS) [Mycoplasma genitalium G-37] Length=837 Score = 163 bits (412), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 172/727 (24%), Positives = 316/727 (43%), Gaps = 107/727 (15%) Query 56 PPYANGNIHVGHALNKILKDFVLRSWNLQGFGTVFIPGWDCHGLPIE---HAVSKKDPQH 112 PP G +H+GHA + D ++R +QGF +IPG+D G+ + ++ K+ Q Sbjct 45 PPNLTGTLHIGHAFEVSITDQIMRFKKMQGFSINWIPGFDHAGIATQTKYEKIALKENQK 104 Query 113 YASLSLSEKRDLCKQFALSQIAIQKAQFQRLGLLNDFSKYYKTIDESFQQNELDLFLQAV 172 Y +K ++ +AL+Q I K Q + LG+ ++S+ T+ E + + F Sbjct 105 YFDADDDKKSEMIMNWALNQSEIIKNQLKSLGVCLNWSETKFTLSEQANKIVNNCFKNLY 164 Query 173 KKDLIFQALKPTYWSPVSRTSLAEAEIEYKEVKTIGLYLTFTVVQSAVLNSGTKLLVWTT 232 + I+QA W T+++ E+ K V Y+ + + +S +L+V TT Sbjct 165 ENGFIYQAYTLVNWDTKLNTAISNIEVINKPVNQHLHYVVYKLAN----DSKQELIVATT 220 Query 233 TPWTLPTNQAIAVHPQFEYLLFTYNNEQYVVLASLFESLKTKFGWTDAIQVQTISGSQLQ 292 P T+ + + V+P+ +++Y T F W + V ++G Q+ Sbjct 221 RPETIFADVCLLVNPK---------DKRY-----------TNF-WNKLV-VNPLTGKQI- 257 Query 293 NTTYKHCLYDKVNPVLLGNHVLCNEGTGLVHTSPAYGLDDFYLCKQNKLNEALVSLDEKG 352 PV+ ++V GTG++ +PA+ +D+ + + K + L +D G Sbjct 258 -------------PVVTDSYVDIKFGTGILKCTPAHDFNDYEINTKYKF-DFLSCIDSNG 303 Query 353 VFNDTLNDPVLTGLFYLKANDVIIERLKQHHNFVFSESFLHREPHDWRSKTPVIYRASKQ 412 + N N GL L+A + I++ L+++ V S RS T V SKQ Sbjct 304 ILNQ--NASKFQGLSVLQARNKIVKWLEKNKLLVKSIPLTSNVGFSERSGTVVEPMLSKQ 361 Query 413 LFIKTKSIQSKLKRQIKRVKFVNNKNKERLQEMLLQRAEWCISRQRVWGLPIPLIYADNQ 472 F+ ++ L + K F+ + +++ L + WCISRQ +WG IP+ Sbjct 362 WFVDLPKLKDHLYLK-KYPDFIPKRFNKQVSNWLNKLKPWCISRQLIWGHKIPV------ 414 Query 473 PLLDVTTIKYTIQQLKKYGIDSWFEKDINFFLNPKKIQPGVE-YKKETDTLEVWFDSGST 531 WFE + + +K ++ Y + D L+ WF S S Sbjct 415 ----------------------WFENNTGEIVVGEKPSKNLQNYTRSKDVLDTWF-SSSL 451 Query 532 YNVLISNKLNFPAD-------LYLEGSDQYRGWFNSSASCGIIQTDQLPFKSLISHGFTL 584 + ++ LN+ D L + G D W +T +LPFK+++ HG Sbjct 452 WPLIC---LNWEQDDSFHETELLVTGYDILFFWVLRMLFNSFFETKKLPFKTVLIHGLVR 508 Query 585 DEHGNKMSKSLGNVVDPLKLCDQYGADILRLWVTNVDWQVDNRIGDNII--KQIVEQYRR 642 DE KMSKSL N +DP+ L YGAD +RL++ + ++ GD++I +Q ++ Sbjct 509 DEQNRKMSKSLNNGIDPVDLIRNYGADAVRLFLCS-----NHTPGDDLIFSEQKIKSAWN 563 Query 643 IRNSL---LRFILGNLNHFNFGEMKDYRFALEDKIVIHKTNALVQELHQWLKQYNFLNCL 699 N L +F++ N D + +L + ++ K + ++Q++ + L ++ Sbjct 564 FLNKLWNVTKFVIQLENDQEISYDLD-KLSLSETWILAKLDKVIQKITKLLDKFQLALAN 622 Query 700 KAINKFVLWLSGWYFEIIKDTLYCDAKTNPNRVAKQA--VLNYIFTQLIGFLNIFIPHTA 757 + + KFV ++ +T K PN++ Q + + + L+I +P + Sbjct 623 QILVKFV-------WDDFCNTFIEAIKKEPNQLKPQLFYTAKSVLSNIAILLSITVPFLS 675 Query 758 EDAWQNY 764 E +Q + Sbjct 676 ERIYQQF 682 >gi|12045122|ref|NP_072933.1| leucyl-tRNA synthetase (leuS) [Mycoplasma genitalium G-37] Length=792 Score = 79.0 bits (193), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 100/213 (47%), Gaps = 38/213 (18%) Query 436 NKNKERLQEMLLQRAEWCISRQRVWGLPIPLIYADNQPLLDVTTIKYTIQQLKKYGIDSW 495 ++NK +L + R +W SRQR WG P P+I+ +N V + + L+ Y D Sbjct 391 SQNKAKLTTVYKLR-DWIFSRQRYWGEPFPIIFDENNTPHLVEQLPVELPLLENYKPDGS 449 Query 496 FEKDI---NFFLNPKKIQPGVEYKKETDTLEVWFDSGST-----YNVLISNKLNF----- 542 + ++N ++ + Y++ET+T+ W +GS Y +LI N NF Sbjct 450 GNSPLMRNQAWVNI--VKDNIHYQRETNTMPQW--AGSCWYYLGYLMLIKNP-NFWPIDS 504 Query 543 -----------PADLYLEGSDQY-------RGWFNSSASCGIIQTDQLPFKSLISHGFTL 584 P DLY+ G++ R W ++ T + PF+ LI+ G L Sbjct 505 KEAKKLFDQYLPVDLYVGGAEHAVLHLLYARFWHKFLFDKKLVSTKE-PFQKLINQGMVL 563 Query 585 DEHGNKMSKSLGNVVDPLKLCDQYGADILRLWV 617 G KMSKS GN ++P L D +GAD LRL++ Sbjct 564 GPDGKKMSKSKGNTINPTPLVDSHGADALRLYL 596 Lambda K H a alpha 0.320 0.136 0.415 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 108192591 Query= gi|13508260|ref|NP_110209.1| putative rRNA methylase [Mycoplasma pneumoniae M129] Length=166 Score E Sequences producing significant alignments: (Bits) Value gi|12045205|ref|NP_073016.1| rRNA methylase, putative [Mycoplasma... 288 3e-103 >gi|12045205|ref|NP_073016.1| rRNA methylase, putative [Mycoplasma genitalium G-37] Length=166 Score = 288 bits (737), Expect = 3e-103, Method: Compositional matrix adjust. Identities = 132/166 (80%), Positives = 145/166 (87%), Gaps = 0/166 (0%) Query 1 MYKSAINIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQ 60 MYKS INIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDK+Q Sbjct 1 MYKSVINIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQ 60 Query 61 MFEHKSWEHFIETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLM 120 +FEHKSWEHF++ T NK IWLLTKSG TPDQI M +LYFVFGQETKGLP+T+M Sbjct 61 LFEHKSWEHFLQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIM 120 Query 121 EQYSQNQVRIPIWNPVRSINLSNTVACVLYEYAKQNHYFNLDKQCA 166 + + QNQ+RIPIWN VRSINL+N V C+LYEY+KQN Y NLDKQCA Sbjct 121 DNFKQNQIRIPIWNSVRSINLANAVVCILYEYSKQNQYSNLDKQCA 166 Lambda K H a alpha 0.322 0.135 0.430 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14785206 Query= gi|13508261|ref|NP_110210.1| similar to methyltransferase [Mycoplasma pneumoniae M129] Length=210 Score E Sequences producing significant alignments: (Bits) Value gi|12045206|ref|NP_073017.1| hypothetical protein MG347 [Mycoplas... 238 5e-82 >gi|12045206|ref|NP_073017.1| hypothetical protein MG347 [Mycoplasma genitalium G-37] Length=210 Score = 238 bits (606), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 113/197 (57%), Positives = 146/197 (74%), Gaps = 0/197 (0%) Query 1 MRLRKVKDALVRVQDSPYFSNPEQLSTIESESLFVEIGCGKSWFLSQQAQQNPKCFFVGI 60 MRLRKVK+AL+++ SPYF + ++ + + L +E+GCGK FL ++AQ+N F+GI Sbjct 1 MRLRKVKNALLKINQSPYFYSKDKFAKFTKKQLVLELGCGKGTFLIKEAQKNNNFLFIGI 60 Query 61 EREPTIVLKAINKVNRLEVKPRNLLITCLDANQLTEYLKPQSISKIFINFPDPWPKKRHT 120 EREPTIVLKAINK+N+L+ N+L+ C DA QL +Y + +S+ KIFINFPDPWPKKRH Sbjct 61 EREPTIVLKAINKINKLDFNLENILLLCTDAKQLDDYFQAESVQKIFINFPDPWPKKRHI 120 Query 121 LRRLTAPHFLKQFHQLLKKQGLIEFKTDNDQLFEFTLEVLQKTVAHFKIIEQTTDLHNSP 180 RRLT+P FLK F LL K GLIEFKTDND+LFE+TL LQ+ F+II Q TDL+NS Sbjct 121 QRRLTSPDFLKLFWNLLVKNGLIEFKTDNDKLFEYTLTTLQENSQIFEIIHQITDLNNSE 180 Query 181 LTSTNIMTEYEQRFVSL 197 + N +TEYEQRF+ L Sbjct 181 FSFQNSITEYEQRFMEL 197 Lambda K H a alpha 0.321 0.136 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20520643 Query= gi|13508262|ref|NP_110211.1| probably membrane component, similar to STARP antigen [Mycoplasma pneumoniae M129] Length=305 Score E Sequences producing significant alignments: (Bits) Value gi|12045207|ref|NP_073018.1| lipoprotein, putative [Mycoplasma ge... 375 4e-133 >gi|12045207|ref|NP_073018.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=322 Score = 375 bits (964), Expect = 4e-133, Method: Compositional matrix adjust. Identities = 195/325 (60%), Positives = 237/325 (73%), Gaps = 23/325 (7%) Query 1 MKKWFSSISKKKVSFSTLLLLGSGIVLSSCSNIDKPNVFRTLSQQSVENKVDYSKLPKEN 60 MK+ F ++ KK +LLLG+G++LSSCSNID+ + FR LS +SVE Y++LP + Sbjct 1 MKRLFWNLKHKKAWL--VLLLGTGMILSSCSNIDQ-SFFRELSVESVEKNTAYNQLPVNS 57 Query 61 KTVRNLVFGTAEYNDGNYVLVVTTETDSSQINFLNGSNNQAVSTENWAGDLGTTVKQVQN 120 T RNLVFGT YNDGNYV+V+ TETDSSQINFLNGS NQ S+ +W G LGTT++QVQN Sbjct 58 TTFRNLVFGTRSYNDGNYVVVIATETDSSQINFLNGSTNQGTSSLSWGGTLGTTIRQVQN 117 Query 121 RYSTYPKGVKFLIWNDIDPNPVKWNPFARYPVIASDNELAKQTDKDNSDKLRRNDESAIQ 180 RYSTYP GVKFLIWNDI P VKWNP+AR+PV+ NELA Q DKDNS+KLRR+D SA++ Sbjct 118 RYSTYPNGVKFLIWNDIAPGSVKWNPYARFPVVDRKNELASQEDKDNSNKLRRSDASAVR 177 Query 181 YREIVTFIQTVYSGSVNNLINQSNVHAQTVGTDVTKAIVIAFRKNNLDQISAHFYNPDNS 240 YREIV FIQ Y G+V NLINQSNVHAQTVG DVTKAIVIAFRK+NL++I A+FY DNS Sbjct 178 YREIVDFIQRTYGGNVANLINQSNVHAQTVGNDVTKAIVIAFRKDNLNKIRANFYGLDNS 237 Query 241 NGSNAPGSNQPNQ--------------------DSGNNGSTTPAAPAAAAAKKSYSAGSF 280 NAPGS Q + SGN +TTP +P ++ S S+ Sbjct 238 TNPNAPGSGQGDSTPPASSGEGGGSDGSSGGDSSSGNGQNTTPTSPQSSQPAVQRSQKSY 297 Query 281 GVKRHAVQVSINFLNFLDSVYTPLN 305 G+K+HAV+VS++FLNFLDSVYTPLN Sbjct 298 GIKQHAVRVSVDFLNFLDSVYTPLN 322 Lambda K H a alpha 0.311 0.127 0.360 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33381515 Query= gi|13508263|ref|NP_110212.1| hypothetical protein MPN524 [Mycoplasma pneumoniae M129] Length=168 ***** No hits found ***** Lambda K H a alpha 0.310 0.130 0.339 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15075112 Query= gi|13508264|ref|NP_110213.1| hypothetical protein MPN525 [Mycoplasma pneumoniae M129] Length=413 Score E Sequences producing significant alignments: (Bits) Value gi|12045208|ref|NP_073019.1| hypothetical protein MG349 [Mycoplas... 506 0.0 >gi|12045208|ref|NP_073019.1| hypothetical protein MG349 [Mycoplasma genitalium G-37] Length=404 Score = 506 bits (1302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 240/368 (65%), Positives = 302/368 (82%), Gaps = 1/368 (0%) Query 1 MQPNYYRVIKKATSFSGLDMISHAYGQIAGVEVVGFYLWLITEANAQAFNSEIRTPISRL 60 MQPNYYRVIKKATSFSGL+MISHAYGQIAGVEVVGFYLWLITEAN QAFNSEIRTPISRL Sbjct 15 MQPNYYRVIKKATSFSGLEMISHAYGQIAGVEVVGFYLWLITEANIQAFNSEIRTPISRL 74 Query 61 QNAFNTTGTKNVNVPDWIYKTIGKLESLGLVRTFFSQEKSEMTFWIVEPLGWKEFNQKKH 120 QNAFN K V +WIYKTI KLESLGLVRTFFS ++SE+TF I++PL WKEF Q K Sbjct 75 QNAFNPFEIKKNQVSEWIYKTISKLESLGLVRTFFSPKRSEITFCIIDPLDWKEFKQNKQ 134 Query 121 FKEKLIESMGKLEYDRNCLSFEQIDNIQFDNALEITANFEANFTSKQDCLSFSFDFEAFH 180 KEKL+E+MGK+EYDRNCL+F+QIDN+QFDNALEI+ANFE NFT+ Q + FSF+FE H Sbjct 135 LKEKLVEAMGKVEYDRNCLAFDQIDNLQFDNALEISANFEVNFTANQSDVWFSFNFEELH 194 Query 181 KQLVKQNLFVSFNQKTKAVINGYFEKYQITLEGILECVI-PSVVNDEVDLELLQKLLEQL 239 K+LVK L +S ++K K +INGYFEKY+++L+ I +C+I S +E+D + L+ + Q+ Sbjct 195 KELVKNKLLISLDEKAKTLINGYFEKYKLSLQQITDCIINSSTQENELDFQKLEMMFFQI 254 Query 240 VKNNTAPIVDTVINDRNFFYDNQNLATETKDAISRCHLEYNAEKYLFLLYGKVENEQLDL 299 VKN+TAPI++TV N+++FFY N+ L TK AI+ CH+ +N+EKYLFLLYGK++ QL L Sbjct 255 VKNDTAPILETVSNNKDFFYKNEILDESTKKAITDCHVNFNSEKYLFLLYGKIDESQLQL 314 Query 300 IRRLRQEFGIADKVINLIVDFSFWKNNSMWREQYILKIAESVERYRSHNNYQATLDNFIR 359 +R+LR ++ + DKVINL++DFSFWKNN MWRE+YILKIA+S++ S N+Y+ TL+NFIR Sbjct 315 VRQLRSDYQLLDKVINLVLDFSFWKNNGMWREKYILKIAQSIKINNSQNSYEKTLNNFIR 374 Query 360 ASSLAKKQ 367 A +L KK Sbjct 375 ALTLNKKH 382 Lambda K H a alpha 0.318 0.134 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 47802980 Query= gi|13508265|ref|NP_110214.1| hypothetical protein MPN526 [Mycoplasma pneumoniae M129] Length=328 Score E Sequences producing significant alignments: (Bits) Value gi|12045209|ref|NP_073020.1| hypothetical protein MG350 [Mycoplas... 258 8e-87 >gi|12045209|ref|NP_073020.1| hypothetical protein MG350 [Mycoplasma genitalium G-37] Length=311 Score = 258 bits (659), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 138/291 (47%), Positives = 183/291 (63%), Gaps = 16/291 (5%) Query 43 FKKRFKYLKLTKREVIEKESRELLLQAFRDFENCEKIKGNHCPNKGNAHLNIFREPPFW- 101 FKK F YLKLT++E+ + + + LL A+ F+ C KIK C NKG+ HL RE W Sbjct 14 FKKHFAYLKLTEKELNDPKIQTLLEVAWNHFDQCRKIKERRCSNKGDIHLQAVREWLPWE 73 Query 102 ----------TKSNKKV-----LGKLIGIKMSCAKSIDKEDIFKLRYSNFIIYKPNWFKY 146 TK +V +G ++ ++ C K ++K + F L Y FI+ KPNWFKY Sbjct 74 FNANQLKKNSTKETTQVSENEFMGNVMLMQTICPKLVNKANWFDLTYERFIVTKPNWFKY 133 Query 147 ADEFPQINQLPINKFQEESFEEIRNDLSELYENEKNHKENISFFNLQKVNFNHEGAKLLL 206 D P I LP+ + SF +S L+E EK K+ I FFNLQK N N+ A +L Sbjct 134 MDLIPMIQNLPVTPSDKNSFGYAYKKISNLFETEKKTKKRIFFFNLQKNNINNMAACMLT 193 Query 207 CDFVERGVKTALLYCEEFVSRFDRAYWKVDDYLDLINEANVIIFVSLGEESFVSKNYILF 266 C+ ++ +K AL+YCEEFVSR+D++YWKVDD L+L++EA VIIF+ LG+ESF +KNYILF Sbjct 194 CEIAKKNIKVALIYCEEFVSRYDKSYWKVDDDLNLLDEAKVIIFIGLGQESFHNKNYILF 253 Query 267 LTRLFDIINSKRKDVYFFSTEYNEKNGLIQAFQKSIHFKAKWVNSFFEQLN 317 +TRLF KRKDV+FFST Y++ NGLIQ F+ I A WV FFEQLN Sbjct 254 MTRLFINCFLKRKDVFFFSTTYSDGNGLIQTFKNQIISSANWVKHFFEQLN 304 Lambda K H a alpha 0.320 0.137 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36382205 Query= gi|13508266|ref|NP_110215.1| putative membrane integrated oxidoreductase [Mycoplasma pneumoniae M129] Length=225 Score E Sequences producing significant alignments: (Bits) Value gi|12045210|ref|NP_073021.1| hypothetical protein MG350.1 [Mycopl... 289 7e-102 >gi|12045210|ref|NP_073021.1| hypothetical protein MG350.1 [Mycoplasma genitalium G-37] Length=224 Score = 289 bits (740), Expect = 7e-102, Method: Compositional matrix adjust. Identities = 142/221 (64%), Positives = 175/221 (79%), Gaps = 0/221 (0%) Query 1 MNGARIAFWPKKEQHQLFNLSFSAMMLALALIASFVSHFISIPFLSALKLTIDISSVFLI 60 MNG ++ F PKK HQLFN++FSAMMLALA+I S +S FISIPF S LKLT DIS VFL+ Sbjct 1 MNGNKLVFLPKKSYHQLFNITFSAMMLALAIITSLISEFISIPFFSQLKLTFDISVVFLV 60 Query 61 ACAFFVSYSWALVITVALSLCSFIWDGNNWIGILTLTIANFAIVSFTRLYFHIFAQIKLR 120 ACAFFVS W+L IT+A +L SF W+ NN IG+LT+T+AN + + FTRLYF +F++ + Sbjct 61 ACAFFVSLGWSLTITLASALTSFFWNTNNVIGVLTVTLANLSTILFTRLYFCLFSKRRFC 120 Query 121 WLWVFSLATLSNTLLLTTLNGLLITPLYWYWFGYVPTANFVEVAKIYNKTPYFHFFLFGV 180 W++VF TLSN LLLTTLNG+LITPL+WY+FGYV T NF+ VA+ YNK FHFF FG+ Sbjct 121 WIFVFLFTTLSNALLLTTLNGILITPLFWYYFGYVQTPNFLIVAEQYNKNTDFHFFFFGI 180 Query 181 PNYWGGIFALYSLFNVIKFTLVSLIGVPVMRAFQKFYWKKA 221 NYW GIF LYS FN++KF LVS GVP+MR+FQKFYWK+A Sbjct 181 NNYWLGIFCLYSFFNLVKFGLVSCFGVPIMRSFQKFYWKRA 221 Lambda K H a alpha 0.334 0.143 0.475 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22673158 Query= gi|13508267|ref|NP_110216.1| inorganic pyrophosphatase [Mycoplasma pneumoniae M129] Length=184 Score E Sequences producing significant alignments: (Bits) Value gi|12045211|ref|NP_073022.1| inorganic pyrophosphatase (ppa) [Myc... 318 8e-115 >gi|12045211|ref|NP_073022.1| inorganic pyrophosphatase (ppa) [Mycoplasma genitalium G-37] Length=184 Score = 318 bits (816), Expect = 8e-115, Method: Compositional matrix adjust. Identities = 151/184 (82%), Positives = 167/184 (91%), Gaps = 0/184 (0%) Query 1 MDKFLIDVTVEIPKSSKIKYEYDRKTSQIRVDRILFGSESYPQNYGFIANTLDWDGDELD 60 MDKFLIDV VEIPK+SKIKYEYDR+T QIRVDRILFGSESYPQNYGFI NTLDWDGDELD Sbjct 1 MDKFLIDVIVEIPKNSKIKYEYDRQTGQIRVDRILFGSESYPQNYGFIKNTLDWDGDELD 60 Query 61 CFIFADQAFLPGVVVPTRIVGALEMVDDGELDTKLLGVIDCDPRYKEINSVNDLPKHRVD 120 CFIFADQ FLP VVPTRIVGALEM+DDGE+DTKLLGVIDCDPRYKEIN ++DLPKHR++ Sbjct 61 CFIFADQPFLPATVVPTRIVGALEMIDDGEIDTKLLGVIDCDPRYKEINQISDLPKHRIE 120 Query 121 EIIGFLKTYKLLQKKEVIIKGVQSLEWAKKEYQVCVDLMKQYGKLPKDEFIAKMQKLHPE 180 EI+ FLKTYKLLQKK VIIKG++ + WAKKEY++C+ LMK YG L KD+FI KMQ LHPE Sbjct 121 EILIFLKTYKLLQKKTVIIKGLKDVCWAKKEYEICLQLMKDYGHLSKDQFIQKMQILHPE 180 Query 181 HYQK 184 HYQK Sbjct 181 HYQK 184 Lambda K H a alpha 0.320 0.141 0.417 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17191811 Query= gi|13508268|ref|NP_110218.1| bacterial histone like protein [Mycoplasma pneumoniae M129] Length=109 Score E Sequences producing significant alignments: (Bits) Value gi|12045213|ref|NP_073024.1| hypothetical protein MG353 [Mycoplas... 185 3e-64 >gi|12045213|ref|NP_073024.1| hypothetical protein MG353 [Mycoplasma genitalium G-37] Length=109 Score = 185 bits (469), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 100/109 (92%), Positives = 106/109 (97%), Gaps = 0/109 (0%) Query 1 MEKTTTSSKPLSRSEINKIIAVATGVKEAKIKEIFKYLNTLLLNELVSRSVCILPENLGK 60 MEKT+ +SKPLSRSEINKIIAVATG+KE KIKEIFKYLNTLLLNELVSRSVCILPENLGK Sbjct 1 MEKTSNTSKPLSRSEINKIIAVATGIKEKKIKEIFKYLNTLLLNELVSRSVCILPENLGK 60 Query 61 LRITIRNARIQKDMKTGEMKHIPPKPLVRYSPSKTIKETAAKVRWKYAD 109 LRITIRNAR QKDM+TGE++HIPPKPLVRYSPSKTIKETAAKVRWKYAD Sbjct 61 LRITIRNARYQKDMQTGEIRHIPPKPLVRYSPSKTIKETAAKVRWKYAD 109 Lambda K H a alpha 0.315 0.130 0.356 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7368650 Query= gi|13508269|ref|NP_110219.1| hypothetical protein MPN530 [Mycoplasma pneumoniae M129] Length=136 Score E Sequences producing significant alignments: (Bits) Value gi|12045214|ref|NP_073025.1| hypothetical protein MG354 [Mycoplas... 200 2e-69 >gi|12045214|ref|NP_073025.1| hypothetical protein MG354 [Mycoplasma genitalium G-37] Length=137 Score = 200 bits (508), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 94/137 (69%), Positives = 116/137 (85%), Gaps = 1/137 (1%) Query 1 MEPNNLKEELVSVFEKACSSHKERLDFICSVRESDTFSNVDVPLAPIKTIIEIAKNEENQ 60 ME NN+KE+L+S F +ACS+H+ERLDFICS RESDTFS+VDVPL PIK IIEI K+E Q Sbjct 1 MEQNNIKEQLISFFNQACSTHQERLDFICSTRESDTFSSVDVPLEPIKNIIEITKDENQQ 60 Query 61 TEILKLAIENIKTLSTVG-SGQYIASHFSTHNEVAIIFCISYFLYHFNFLHDENKKQLLK 119 EI K+A+ NIKTLS+VG +GQY+AS FST++E AIIFC+ YFLYHF FL D NKKQ++K Sbjct 61 IEITKIAVNNIKTLSSVGATGQYMASFFSTNSEPAIIFCVIYFLYHFGFLKDNNKKQIIK 120 Query 120 RAFEAVAEKIADYLNEN 136 +A+E +A+ IADYLNEN Sbjct 121 KAYETIADNIADYLNEN 137 Lambda K H a alpha 0.318 0.132 0.368 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10798154 Query= gi|13508270|ref|NP_110220.1| ATP-dependent protease binding subunit ClpB [Mycoplasma pneumoniae M129] Length=715 Score E Sequences producing significant alignments: (Bits) Value gi|12045215|ref|NP_073026.1| ATP-dependent Clp protease, ATPase s... 1204 0.0 >gi|12045215|ref|NP_073026.1| ATP-dependent Clp protease, ATPase subunit (clpB) [Mycoplasma genitalium G-37] Length=714 Score = 1204 bits (3116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 589/711 (83%), Positives = 657/711 (92%), Gaps = 0/711 (0%) Query 1 MDFSFTPTPDKRDFLKEMGRSINDEVLKNKVDPIIGRDNEIRRLIEILSRKNKNNPVLIG 60 M+ +FTP + R+FL+E+GR+INDEVLKNKVDPIIGRDNEIRRLIEILSRK+KNNPVLIG Sbjct 1 MNINFTPAGENRNFLQEIGRNINDEVLKNKVDPIIGRDNEIRRLIEILSRKSKNNPVLIG 60 Query 61 EPGVGKTAIVEGFVRRVVNNDVPLNLRDVEIYELSLSGLIAGTQYQGEFEKRVNGILKQV 120 EPGVGKTAIVEGFVRRVV+NDVPLNLRDVEIYELSLSGLIAGT++QGEFEKR+N ILKQV Sbjct 61 EPGVGKTAIVEGFVRRVVSNDVPLNLRDVEIYELSLSGLIAGTKFQGEFEKRINTILKQV 120 Query 121 KESNGKIILFIDEIHQIVGLGRNSSSGAMDIANILKPMLARGEIKVIGATTLKEYREYVE 180 KESNG+IILFIDEIHQIVGLGRNSSSGAMDIANILKPMLARGEIKVIGATTLKEYREY+E Sbjct 121 KESNGRIILFIDEIHQIVGLGRNSSSGAMDIANILKPMLARGEIKVIGATTLKEYREYIE 180 Query 181 KDGALERRFQKILVSEPSQQEALTIMRGLKTRWELFHNLTIFDSALVAAVEMSARYIPDR 240 KDGALERRFQKIL++EPS QEALTIMRGLKTRWELFHN+TIFDSALVAAVEMS RYI +R Sbjct 181 KDGALERRFQKILINEPSSQEALTIMRGLKTRWELFHNITIFDSALVAAVEMSTRYINER 240 Query 241 NLPDKAIDLIDEASAKIKTEMASEPVVIDTLKREIINLETEYAALKQDKENADNKKKQGH 300 NLPDKAIDLIDEA+AKIKTEM+SEPV ID+LKREIINLETEYAALKQDKEN + + K+ + Sbjct 241 NLPDKAIDLIDEAAAKIKTEMSSEPVAIDSLKREIINLETEYAALKQDKENDNKQSKKEY 300 Query 301 LDNLKQQLDELKKKRDSLTAEWKKEKTNFESINKLKKEIEDLQTRLELYQTEGNYEAASK 360 L+ LK+QLD LK+KRDSL EWKKEK +FE+INKLKKEIE+ QT+LE YQ+EGNYE+ASK Sbjct 301 LEKLKKQLDALKQKRDSLINEWKKEKADFENINKLKKEIEEFQTKLETYQSEGNYESASK 360 Query 361 ILYYDIPKLKNQLEQAQKKYVDSKHDLFKTEVSENEVAEVVSQATGIPLKKLLETEKEKL 420 ILY DIP+LK +LE AQ+KY SKHDLFKTEVSENE+AEV+SQ TGIPLKKLLE+EK+KL Sbjct 361 ILYSDIPRLKKELESAQQKYATSKHDLFKTEVSENEIAEVISQTTGIPLKKLLESEKDKL 420 Query 421 LHLGDEIKKRVKGQDAAVETVVNTVMRGRVNLNDPNRPIGSFIFLGSTGVGKTELAKSLA 480 LHLGDEIKKRVKGQD A++ VVNTV+RGRVN+NDPN+PIGSFIFLGSTGVGKTELAKSLA Sbjct 421 LHLGDEIKKRVKGQDEAIDAVVNTVIRGRVNINDPNKPIGSFIFLGSTGVGKTELAKSLA 480 Query 481 EVLFDNEKAMIRFDMSEYMEKHSVAKLIGAPPGYVGYEQSGLLTEAVRRKPYCVLLFDEI 540 EVLFDNEKA+IRFDMSEYMEKHSVAKLIGAPPGY+GYEQSGLLTEAVRRKPY VLLFDEI Sbjct 481 EVLFDNEKALIRFDMSEYMEKHSVAKLIGAPPGYIGYEQSGLLTEAVRRKPYSVLLFDEI 540 Query 541 EKAHPDVTNILLQVLDDGTLKDSQGRLVNFKNTMIIMTSNLGSNYIMENKRDLAMEALKK 600 EKAHPDVTN+LLQVLDDGTLKDSQGR+VNFKNT+IIMTSNLGSN+++E K+DLA+++LKK Sbjct 541 EKAHPDVTNVLLQVLDDGTLKDSQGRVVNFKNTLIIMTSNLGSNFLLEGKKDLAIQSLKK 600 Query 601 HFRAEFINRIDEIVFFSVLQKTTVLEIITNLLDQLNQRLAKQNLKFTFDPKLNEFIYKSS 660 HFR EFINRIDEIVFF+VL+K TVL II +LL QL++RL KQNL F FD L EFIYKSS Sbjct 601 HFRPEFINRIDEIVFFNVLEKDTVLSIINSLLAQLSKRLNKQNLFFNFDSNLTEFIYKSS 660 Query 661 FDEQFGARPIKRFIDRQIATLIAKQILEGIITKDVSYNVIVEKDKVAIVAN 711 FD+QFGARPIKRFID +ATLIAK IL+G I K V YN+ V KD + I N Sbjct 661 FDQQFGARPIKRFIDHSVATLIAKYILQGKIKKGVGYNIAVVKDNITITQN 711 Lambda K H a alpha 0.316 0.135 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 88465718 Query= gi|13508271|ref|NP_110221.1| similar to choline kinase [Mycoplasma pneumoniae M129] Length=282 Score E Sequences producing significant alignments: (Bits) Value gi|12045216|ref|NP_073027.1| hypothetical protein MG356 [Mycoplas... 434 2e-157 >gi|12045216|ref|NP_073027.1| hypothetical protein MG356 [Mycoplasma genitalium G-37] Length=280 Score = 434 bits (1117), Expect = 2e-157, Method: Compositional matrix adjust. Identities = 207/277 (75%), Positives = 239/277 (86%), Gaps = 0/277 (0%) Query 1 MNKGDAIDFLCEKLNLQPTAVAHVEQIHSGFTNFSFFTELKDGSKYQVRLARKDVPLNRR 60 M+ A+ FLCEKL + T + +EQIHSGFTNFSFF ELKD SK+Q+RL+RKDV L+RR Sbjct 1 MDLKKAVAFLCEKLQVVETDIFKIEQIHSGFTNFSFFCELKDHSKFQIRLSRKDVILDRR 60 Query 61 NEQIILDLVTPIFGNPFVYFDVTAGNAIKKWIEGKQPKRPTRLFLEQLVASLKKVHAVEW 120 NEQIIL LV P F NPFVYFDVT GNAIK+WIEG QPKR T LFL +LV SLKKVH+V+W Sbjct 61 NEQIILQLVEPFFSNPFVYFDVTTGNAIKRWIEGTQPKRATDLFLCRLVESLKKVHSVDW 120 Query 121 KQFANEIWIFDPLIYFNQTKLPDFYKKLYVELTDKHKAIPKTLCHHDSTFDNLVYTPKKQ 180 K FANE+ IFDPL+YF +TKL FYK+LY+ LT KH IPKTLCHHD+TFDNLV+TPKKQ Sbjct 121 KPFANELLIFDPLVYFEKTKLSAFYKRLYLNLTKKHIDIPKTLCHHDATFDNLVWTPKKQ 180 Query 181 VVLIDFEWSCVDNPYYEIANIIREELTIETANQIIDLYGSLDKKLVFETVIYVLLFAFQW 240 V+LIDFEWSCVDNPYYEIANIIREELTIETAN++ID+YG L +KLVFETVIYVLLFAFQW Sbjct 181 VILIDFEWSCVDNPYYEIANIIREELTIETANKLIDIYGGLKRKLVFETVIYVLLFAFQW 240 Query 241 TEIMPQTQQIIDYKKWVQKRLNYFLKALFPNTWKIAK 277 TEIMPQT+ I++Y+KWV+KRL YFLKALFP+ WK A+ Sbjct 241 TEIMPQTEAILNYRKWVEKRLEYFLKALFPSIWKQAQ 277 Lambda K H a alpha 0.324 0.140 0.433 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30359529 Query= gi|13508272|ref|NP_110222.1| acetate kinase [Mycoplasma pneumoniae M129] Length=390 Score E Sequences producing significant alignments: (Bits) Value gi|12045217|ref|NP_073028.1| acetate kinase (ackA) [Mycoplasma ge... 619 0.0 >gi|12045217|ref|NP_073028.1| acetate kinase (ackA) [Mycoplasma genitalium G-37] Length=393 Score = 619 bits (1596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 293/388 (76%), Positives = 339/388 (87%), Gaps = 0/388 (0%) Query 1 MNDNKILVVNAGSSSIKFQLFDYHKKVLAKALCERIFVDGFFKLEFNEQKVEEKVAFPDH 60 M +KILVVNAGSSSIKFQLF+ K+VLAK LCERIF+DGFFKLEFN++K+EEKV F DH Sbjct 1 MQSHKILVVNAGSSSIKFQLFNDKKQVLAKGLCERIFIDGFFKLEFNQKKIEEKVQFNDH 60 Query 61 HAAVTHFLNTLKKHKIIQELSDIILVGHRVVQGANYFKDSVIVDAEALAKIKEFIKLAPL 120 + AV HFLN LKK+KII ELS+I L+GHRVVQGANYF D+V+VD +LAKIKEFIKLAPL Sbjct 61 NLAVKHFLNALKKNKIITELSEIGLIGHRVVQGANYFTDAVLVDTHSLAKIKEFIKLAPL 120 Query 121 HNKPEADVIEIFFKEVPSAKNVAVFDTTFHTTIPQENYLYAVPRSWEQKHLVRRYGFHGT 180 HNKPEADVIEIF KE+ +AKNVAVFDTTFHTTIP+ENYLYAVP +WE+ +LVRRYGFHGT Sbjct 121 HNKPEADVIEIFLKEIKTAKNVAVFDTTFHTTIPRENYLYAVPENWEKNNLVRRYGFHGT 180 Query 181 SYKFINNYLEKHLNKQNLNLIVCHLGNGASVCAIKNGKSFNTSMGFTPLEGLIMGTRSGD 240 SYK+IN +LEK NK+ LNLIVCHLGNGASVCAIK GKS NTSMGFTPLEGLIMGTRSGD Sbjct 181 SYKYINEFLEKKFNKKPLNLIVCHLGNGASVCAIKQGKSLNTSMGFTPLEGLIMGTRSGD 240 Query 241 LDPAIIGYVAEQENMSASDVVNALNKKSGMLALTGASDMRDVFAKPQENAVAIKMYVNRV 300 +DPAI+ Y+AEQ+ +S +DVVN LNKKSGM A+TG+SDMRD+F KP+ N +AIKMYVNRV Sbjct 241 IDPAIVSYIAEQQKLSCNDVVNELNKKSGMFAITGSSDMRDIFDKPEINDIAIKMYVNRV 300 Query 301 ADYIAKYLNQLEGNIDGLVFTGGIGENASDCVELFINAVKSLGFATDLKLFVKYGDSCVV 360 ADYIAKYLNQL G ID LVFTGG+GENAS CV+L I V SLGF T+ LF Y DS ++ Sbjct 301 ADYIAKYLNQLSGEIDSLVFTGGVGENASYCVQLIIEKVASLGFKTNSNLFGNYQDSSLI 360 Query 361 STPQSKYKIYRVRTNEELMIVEDSIRLT 388 ST +SKY+I+RVRTNEELMIVED++R++ Sbjct 361 STNESKYQIFRVRTNEELMIVEDALRVS 388 Lambda K H a alpha 0.320 0.136 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44863758 Query= gi|13508273|ref|NP_110223.1| conserved hypothetical, RNA-expressed [Mycoplasma pneumoniae M129] Length=140 ***** No hits found ***** Lambda K H a alpha 0.317 0.133 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11381838 Query= gi|13508274|ref|NP_110224.1| Holliday junction DNA helicase RuvA [Mycoplasma pneumoniae M129] Length=206 Score E Sequences producing significant alignments: (Bits) Value gi|12045218|ref|NP_073029.1| Holliday junction DNA helicase (ruvA... 295 8e-104 >gi|12045218|ref|NP_073029.1| Holliday junction DNA helicase (ruvA) [Mycoplasma genitalium G-37] Length=260 Score = 295 bits (754), Expect = 8e-104, Method: Compositional matrix adjust. Identities = 141/206 (68%), Positives = 175/206 (85%), Gaps = 1/206 (0%) Query 1 MIASIFGKITFVGKRKIIVEANCISYWFNVKENHSFEKNLEKPRQVFCQIIKRMVTNQIL 60 MI SIFGK+TFVGKRKIIVE N ISYWFN KENH FEKNLEK +Q+FC IIK++V NQI+ Sbjct 56 MITSIFGKVTFVGKRKIIVEHNWISYWFNTKENHKFEKNLEKNKQIFCHIIKKIVANQII 115 Query 61 EEGFAFNTLEEKEWFSKFIELNGIGSKTALNLLNNNLEEMRDYIKNSNYHALTKLTGSNS 120 EE FAFNTLEEKEWF + IELNGIGSKTALNLLNN+LEE++ YI +NY AL + G N+ Sbjct 116 EEAFAFNTLEEKEWFCRLIELNGIGSKTALNLLNNDLEEIKQYILENNYSALCGINGVNN 175 Query 121 KVARALLALELYDRDDGGKRIKPNTAMANDYDEMFDTLKSLGYKPQDIQNALSKIEIKPN 180 K+ARALL+LE++++ + K IK +A+ YDE+F+TLKSLGYK Q+IQ+AL IE+KP+ Sbjct 176 KIARALLSLEIFEKSENNKNIKG-VQVADGYDELFETLKSLGYKQQEIQDALKMIEVKPD 234 Query 181 FDVSEVIAEVIKLMSFQNNEVTNKTA 206 FD+S+++AEVIKLMSF+NNE+TNKTA Sbjct 235 FDISQLVAEVIKLMSFKNNEITNKTA 260 Lambda K H a alpha 0.317 0.133 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20157900 Query= gi|13508275|ref|NP_110225.1| Holliday junction DNA helicase RuvB [Mycoplasma pneumoniae M129] Length=307 Score E Sequences producing significant alignments: (Bits) Value gi|12045219|ref|NP_073030.1| Holliday junction DNA helicase (ruvB... 507 0.0 >gi|12045219|ref|NP_073030.1| Holliday junction DNA helicase (ruvB) [Mycoplasma genitalium G-37] Length=307 Score = 507 bits (1306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 255/306 (83%), Positives = 284/306 (93%), Gaps = 0/306 (0%) Query 1 MKLQIKPPNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIAS 60 MKLQIKPPN F EFVGKQEII+QIQLSIKAS++NK QLDHILLYGPPGVGKTTLARLIA+ Sbjct 1 MKLQIKPPNTFDEFVGKQEIISQIQLSIKASKLNKTQLDHILLYGPPGVGKTTLARLIAN 60 Query 61 EMNTKLQIIQGGHLQRPSDFLNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQV 120 E+ TKLQIIQGGHLQ+PSDFLNA+SLIKKGDVLF+DEIHAVAP+VMELM+PVMD F++QV Sbjct 61 ELKTKLQIIQGGHLQKPSDFLNAISLIKKGDVLFIDEIHAVAPNVMELMYPVMDVFKIQV 120 Query 121 LIGKDFNSKMVEMKVNPFTWIGATTQFGKIINPLEDRFGMILNIDYYSNQEIERIVSIYG 180 LIGKDFNSK+VEMKVNPFT IGATTQ GKIINPLEDRFG+ILNI+YYSN EIE++VSIYG Sbjct 121 LIGKDFNSKIVEMKVNPFTLIGATTQLGKIINPLEDRFGVILNINYYSNAEIEKMVSIYG 180 Query 181 EQMELELKPEEITQITQHSKQTPRIAIRIVKRLFEQKIVNKKIDLAALFKSLMIYKNGLQ 240 +QM+LEL EI+ IT+HSKQTPRIAIRIV+R+FEQKIVNKKIDL LFK+LMIYKNGLQ Sbjct 181 KQMKLELNSNEISAITEHSKQTPRIAIRIVRRIFEQKIVNKKIDLEGLFKNLMIYKNGLQ 240 Query 241 SIDVQYLKALNGQYEPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRTG 300 SIDVQYL+ LN Q EPQGIKSI SMLGID+ T+ENKIEPFLLRENMIQKTKKGRIIT +G Sbjct 241 SIDVQYLEVLNRQNEPQGIKSISSMLGIDRHTIENKIEPFLLRENMIQKTKKGRIITNSG 300 Query 301 RNYLTS 306 R YL + Sbjct 301 REYLVN 306 Lambda K H a alpha 0.321 0.138 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 33665613 Query= gi|13508276|ref|NP_110226.1| UV protection protein MucB [Mycoplasma pneumoniae M129] Length=412 Score E Sequences producing significant alignments: (Bits) Value gi|12045220|ref|NP_073031.1| hypothetical protein MG360 [Mycoplas... 533 0.0 >gi|12045220|ref|NP_073031.1| hypothetical protein MG360 [Mycoplasma genitalium G-37] Length=411 Score = 533 bits (1372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 254/411 (62%), Positives = 323/411 (79%), Gaps = 0/411 (0%) Query 1 MIGTFTYLDPTIQADPNLLFFYFDFDAFFASVEEIENPELKNQPLIVGNRTSRSVVSTCN 60 MI TFTY +P D NL+F YFDFDAFFASVEE+ENPEL NQPLIVGNR SRSVVSTCN Sbjct 1 MINTFTYFEPEYLIDKNLIFLYFDFDAFFASVEELENPELVNQPLIVGNRFSRSVVSTCN 60 Query 61 YLARSYGIKSGMPIAKALELCPQAIFATSHFRNYRKYSAKIFAMIAEQFNLEVHTLSIDE 120 Y+ARSYGI+SGM I KALELCP AIFA S+FRNYRK+S +IF++I F+L++ LS+DE Sbjct 61 YVARSYGIRSGMSILKALELCPNAIFAHSNFRNYRKHSKRIFSVIESTFSLKIDVLSVDE 120 Query 121 GFVCFRDLSPRKAFSLAKRIQRHVYEQLNFHISIGISNQFTLAKIFSNQAKPFGVKSCFS 180 G CF+++S +KAF +AK+I+ V++ L ISIGIS+ F +AKIFSNQAKPFG+KSC Sbjct 121 GVACFQNISFKKAFLIAKKIKNFVFQNLRIKISIGISDHFLIAKIFSNQAKPFGIKSCSV 180 Query 181 KEVKRKLWPLPIVELPGIGKRQLDNAFKNNFHKIGDLAKCKDVTLFKRVFGIAWESLHAV 240 K++K+KLWPLPI E+PGIG++ +D FKNNF+KI DLA C+D +L K+VFG WESL AV Sbjct 181 KDIKKKLWPLPITEIPGIGEKHIDLVFKNNFYKINDLAVCEDASLLKKVFGNFWESLKAV 240 Query 241 ALGETYTQSEQDVKSRSIAVSETLEYLNYSSNQLQQKLTSIFNELYARLQLSFQMCKGVV 300 +LG+ YT + VKSRS AVSETLE LNYS+NQL +KLT IF++L+ RLQLS Q+CKG+V Sbjct 241 SLGKWYTDNNNQVKSRSFAVSETLEDLNYSNNQLNKKLTQIFDQLFIRLQLSSQVCKGIV 300 Query 301 VQLKSNDFIVNSHSQSIKKYTADYQTLLVIVKKLFNRLLMGVGLNIRLIGVSFFGLKNNP 360 VQLKSNDFIVNSHS +KKY+ DY+ LL I K+LFNRLL+ N+RLIG+SFF LK Sbjct 301 VQLKSNDFIVNSHSNKMKKYSNDYRKLLSITKRLFNRLLINTEKNVRLIGISFFDLKKID 360 Query 361 SSSRPEGLLFYEYQQAKPKQQTAHFALDQMIYEINQSFGYEIIQRAKKLAA 411 + + LFY++ + + +LD++I++IN+SFG+EII+RA KL + Sbjct 361 TDEGQKKSLFYQFIPKSISKLSEESSLDKLIFDINESFGFEIIKRANKLKS 411 Lambda K H a alpha 0.323 0.136 0.393 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 47662383 Query= gi|13508277|ref|NP_110227.1| ribosomal protein L10 [Mycoplasma pneumoniae M129] Length=161 Score E Sequences producing significant alignments: (Bits) Value gi|12045221|ref|NP_073032.1| ribosomal protein L10 (rpl10) [Mycop... 252 2e-89 >gi|12045221|ref|NP_073032.1| ribosomal protein L10 (rpl10) [Mycoplasma genitalium G-37] Length=162 Score = 252 bits (644), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 120/161 (75%), Positives = 140/161 (87%), Gaps = 0/161 (0%) Query 1 MEAKKDKAQQVADVSHLLSTSAGFVIFDYTSMSAIEATSIRKKLFKNGSKIKVIKNNILR 60 +++KK+K QQV D S+LLS S GFVIFDY+ MSA++AT +RKKLF GSKIK++KNNILR Sbjct 2 VDSKKNKKQQVTDFSNLLSQSKGFVIFDYSGMSAVDATLMRKKLFNKGSKIKIVKNNILR 61 Query 61 RALKAGKFEGIDETAIKGKLAVAVGVNEIVETLKAVDGVVKAKEAMNFVCGYFDNRAFNS 120 RALK FEG+DE+ IKGK+AVAVG+NEI+ETLK VD VVK KE M FVCG+FDNR FNS Sbjct 62 RALKTSNFEGVDESVIKGKIAVAVGINEILETLKVVDSVVKEKELMKFVCGHFDNRIFNS 121 Query 121 ADLEKIAKLPGRNELYGMFLSVLQAPLRKFLYALEAVKAAK 161 DL+KIAKLPGRNELYGMFLSVLQAPLRKFLYAL+AV+ AK Sbjct 122 DDLQKIAKLPGRNELYGMFLSVLQAPLRKFLYALQAVRNAK 162 Lambda K H a alpha 0.318 0.133 0.355 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 14060441 Query= gi|13508278|ref|NP_110228.1| ribosomal protein L7/L12 ('A' type) [Mycoplasma pneumoniae M129] Length=122 Score E Sequences producing significant alignments: (Bits) Value gi|12045222|ref|NP_073033.1| ribosomal protein L7/L12 (rpl7) [Myc... 218 6e-77 >gi|12045222|ref|NP_073033.1| ribosomal protein L7/L12 (rpl7) [Mycoplasma genitalium G-37] Length=122 Score = 218 bits (555), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 111/122 (91%), Positives = 116/122 (95%), Gaps = 0/122 (0%) Query 1 MAKLDKNQLIESLKEMTIMEIDEIIKAVEEAFGVSATPVVAAGAVGGTQEAASEVTVKVT 60 M KLDK QLIESLKEMTI+EIDEIIKAVEEAFGV+ATP+VAAGA G TQEAASEV+VKVT Sbjct 1 MGKLDKKQLIESLKEMTIVEIDEIIKAVEEAFGVTATPIVAAGAAGATQEAASEVSVKVT 60 Query 61 GYTDNAKLAVLKLYREIAGVGLMEAKTAVEKLPCVVKQDIKPEEAEELKKRFVEVGATVE 120 GY DNAKLAVLKLYREI GVGLMEAKTAVEKLPCVVKQDIKPEEAEELKKRFVEVGATVE Sbjct 61 GYADNAKLAVLKLYREITGVGLMEAKTAVEKLPCVVKQDIKPEEAEELKKRFVEVGATVE 120 Query 121 IK 122 +K Sbjct 121 VK 122 Lambda K H a alpha 0.311 0.128 0.329 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8930705 Query= gi|13508279|ref|NP_110229.1| ribosomal protein L32 [Mycoplasma pneumoniae M129] Length=57 Score E Sequences producing significant alignments: (Bits) Value gi|12045223|ref|NP_073034.1| ribosomal protein L32 (rpL32) [Mycop... 103 2e-33 >gi|12045223|ref|NP_073034.1| ribosomal protein L32 (rpL32) [Mycoplasma genitalium G-37] Length=57 Score = 103 bits (256), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 51/57 (89%), Positives = 54/57 (95%), Gaps = 0/57 (0%) Query 1 MAVQQRRSSKHRRDKRRSHDALTAQALSVCQKCGKKKLFHRVCSCGMYGDLRVKKAY 57 MAVQQRRSSKHRRDKRRSHDALT Q LSVC+KCGKKKL HRVCSCGMYG+LRVKKA+ Sbjct 1 MAVQQRRSSKHRRDKRRSHDALTLQTLSVCKKCGKKKLSHRVCSCGMYGELRVKKAH 57 Lambda K H a alpha 0.327 0.132 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4358043 Query= gi|13508280|ref|NP_110230.1| ribosomal protein S20 [Mycoplasma pneumoniae M129] Length=87 Score E Sequences producing significant alignments: (Bits) Value gi|12045224|ref|NP_073035.1| ribosomal protein S20 (rpsT) [Mycopl... 130 4e-43 >gi|12045224|ref|NP_073035.1| ribosomal protein S20 (rpsT) [Mycoplasma genitalium G-37] Length=88 Score = 130 bits (326), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 67/87 (77%), Positives = 76/87 (87%), Gaps = 0/87 (0%) Query 1 MANIKSNEKRLRQNIKRNLNNKGQKTKLKTNVKNFHKEINLDNLGNVYSQADRLARKGII 60 MANIKSNEKRLRQ+IKRNLNNKGQKTKLKTNVK F+KEINLDNL +VYSQADRLARKGII Sbjct 1 MANIKSNEKRLRQDIKRNLNNKGQKTKLKTNVKKFNKEINLDNLSSVYSQADRLARKGII 60 Query 61 STNRARRLKSRNVAVLNKTQVTAVEGK 87 S NRA+RLKS+N +L+K+ + K Sbjct 61 SLNRAKRLKSKNAVILHKSNTNSTAKK 87 Lambda K H a alpha 0.311 0.126 0.326 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4613575 Query= gi|13508281|ref|NP_110231.1| hypothetical protein MPN542 [Mycoplasma pneumoniae M129] Length=218 Score E Sequences producing significant alignments: (Bits) Value gi|12045225|ref|NP_073036.1| hypothetical protein MG364 [Mycoplas... 272 4e-95 >gi|12045225|ref|NP_073036.1| hypothetical protein MG364 [Mycoplasma genitalium G-37] Length=224 Score = 272 bits (695), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 156/203 (77%), Positives = 183/203 (90%), Gaps = 1/203 (0%) Query 4 GGQQGGFFGLLVIIIPVILLIVFFSKKKNSQKTEFGGEGGSRASKKDEVWKTVKQFLQEQ 63 GGQQG FFGLLVI+IP+ILLIVFFSKKK +QK +F GEGG+R+S+KDEVWKT+KQFLQE+ Sbjct 3 GGQQGSFFGLLVIVIPIILLIVFFSKKKGAQKNDFSGEGGNRSSRKDEVWKTIKQFLQEK 62 Query 64 NERGKEIIKTFVAKNPNPLHSRKDRQFFNQEVQAYITAHNLSKTAAKRYRHEQLKLKQRE 123 NERGKEIIKTFVAK PNPLHS+KDR+ FNQE+QAYIT++NL K+ AKRY++EQ +L QRE Sbjct 63 NERGKEIIKTFVAKKPNPLHSKKDRKLFNQEIQAYITSNNLGKSEAKRYKNEQTRLMQRE 122 Query 124 LYCIYFITKDAKTSVFDEARIIEAEVYQKPNKTGKGAPERLIRILGLKNFNDEMKWIQPL 183 LYCIYF+TKDAK++ D+ARIIEAEVYQKP KT K PERLIRILGLKNF EM+WIQPL Sbjct 123 LYCIYFVTKDAKSTEVDDARIIEAEVYQKPTKT-KSTPERLIRILGLKNFETEMQWIQPL 181 Query 184 MDREEKRKEKEEKRKRELAARQL 206 M REEKRKEKEE++K +LAAR+L Sbjct 182 MVREEKRKEKEEQKKLKLAAREL 204 Lambda K H a alpha 0.316 0.133 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21668651 Query= gi|13508282|ref|NP_110232.1| methionyl-tRNA formyltransferase [Mycoplasma pneumoniae M129] Length=311 Score E Sequences producing significant alignments: (Bits) Value gi|12045226|ref|NP_073037.1| methionyl-tRNA formyltransferase (fm... 432 1e-155 >gi|12045226|ref|NP_073037.1| methionyl-tRNA formyltransferase (fmt) [Mycoplasma genitalium G-37] Length=311 Score = 432 bits (1112), Expect = 1e-155, Method: Compositional matrix adjust. Identities = 207/310 (67%), Positives = 250/310 (81%), Gaps = 0/310 (0%) Query 1 MIKVVFFGTSTLSKCCLEAIFQDPEFVVCGVVTQPDKVNERNNKINFSAVKQFCIENNIP 60 M K+VFFGTSTLSK CLE +F D +F +C VVTQPDK+N RNNKI S VK FC+E NI Sbjct 1 MFKIVFFGTSTLSKKCLEQLFYDNDFEICAVVTQPDKINHRNNKIVPSDVKSFCLEKNIT 60 Query 61 CFQPEKNIQIKTELAQLQADIGVCVAFGQYIHNDIINLFPYKIANLHPSKLPLLRGGAPL 120 FQP+++I IK +L +L+ADIG+CV+FGQY+H DII+LFP K+ NLHPSKLPLLRGGAPL Sbjct 61 FFQPKQSISIKADLEKLKADIGICVSFGQYLHQDIIDLFPNKVINLHPSKLPLLRGGAPL 120 Query 121 HWTIINGFTTSSLSVIELVQKMDAGPIWKQKDFKVNPNWNTGDLFEYVQTHAPQFLIQCL 180 HWTIINGF S+LSVI+LV+KMDAGPIWKQ+DF VN +WNTGDL YV+ H+P FLI+C Sbjct 121 HWTIINGFKKSALSVIQLVKKMDAGPIWKQQDFLVNNDWNTGDLSIYVEEHSPSFLIECT 180 Query 181 KEIVSGKSQWKEQINPPTFGLNIKKEQERLDLNLEPKAFINWVKGLAPKPGGWLEFEGQN 240 KEI++ K +W EQI PTFGLNI+KEQE LDLN K+F+NWVKGLAPKPGGWL FEG+N Sbjct 181 KEILNKKGKWFEQIGEPTFGLNIRKEQEHLDLNQIYKSFLNWVKGLAPKPGGWLSFEGKN 240 Query 241 IKILQATYLGKMTSTTAVGQITKISKQGIEIALANDEIVLLQIIQIPGKRAMGVSEIING 300 IKI +A Y+ K +G+I IS++GI IAL ++EI+ ++ IQIPGKR M VSEIING Sbjct 241 IKIFKAKYVSKSNYKHQLGEIVNISRKGINIALKSNEIISIEKIQIPGKRVMEVSEIING 300 Query 301 KHPFAEGKFF 310 KHPF GK F Sbjct 301 KHPFVVGKCF 310 Lambda K H a alpha 0.321 0.138 0.424 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 34233809 Query= gi|13508283|ref|NP_110233.1| hypothetical protein MPN544 [Mycoplasma pneumoniae M129] Length=664 Score E Sequences producing significant alignments: (Bits) Value gi|12045227|ref|NP_073038.1| hypothetical protein MG366 [Mycoplas... 879 0.0 >gi|12045227|ref|NP_073038.1| hypothetical protein MG366 [Mycoplasma genitalium G-37] Length=667 Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/660 (64%), Positives = 541/660 (82%), Gaps = 5/660 (1%) Query 1 MLTKAFFLKNFDRSKELIPLSYADVFGAASQLLKKHHKQVDTEIDVQEDLIEDPVFEIDI 60 M+TK+FFLKNFDRSKELIPLSY DVF A +Q LK + D +I ++E+LIEDPVFE+D+ Sbjct 1 MITKSFFLKNFDRSKELIPLSYNDVFSAVNQFLKSYTDVNDIDI-IEENLIEDPVFELDV 59 Query 61 LELLNEAPELLFDSKNPRVKEAQIIIEKAKKDIASYFHLDNILDTDNLGLKATVTEKIQF 120 LELLNE P LL DSKNPRV+EA+II KAKK+I YF+L DTD+L +V +K + Sbjct 60 LELLNEDPMLLLDSKNPRVQEAKIIANKAKKNIKDYFNLPIFFDTDSLDKNVSVYQKAEL 119 Query 121 TEKQIEAAVQNKKAAIIFKPVFTVNQCLIQPDAVVVHANGLCEFVVIKATTNTKRKFILE 180 TEK+I+ + +KK+AIIFKP+F + CLIQPDA++VH GLCEFVVIKATTNTKRK+ LE Sbjct 120 TEKKIQEIITSKKSAIIFKPIFEIEDCLIQPDAIIVHEKGLCEFVVIKATTNTKRKYFLE 179 Query 181 IIYDFLLFEKLGKYKLVNYYFCIVNYELKNKHNVSFFLNTEIKTAKNSSTSKTKEEQVLY 240 IIYDF+LF+K+GKYKL+NYYFC V YEL+NK+NVSFFLNTEIKT+KNS + +KE+ + Sbjct 180 IIYDFVLFKKIGKYKLLNYYFCTVKYELQNKNNVSFFLNTEIKTSKNSFSLSSKEKD-YF 238 Query 241 GHLPFNDPKKIAYIHSKKSGGVNGFLLVKLVDNIIRSGVTNLEQIISFVFRELNAPSIRS 300 + PFN P+KIAYIH KKS GVNGFL+VKL+DN+I++ + +L +I FV +E+++ S+R+ Sbjct 239 KNKPFNHPEKIAYIHKKKSNGVNGFLIVKLIDNLIKNNIVDLNKISDFVTKEIDSKSVRN 298 Query 301 LKQIISEVAKVQLDFWNIIDDVKQHQELQDNQITFNYSDAFNSFWNNYLLRNLIKLVFAY 360 ++ +I AK+Q++FW+ I D+K++QEL+ NQI FNYS+ F+SFW+NYLLRNLIKLVFA+ Sbjct 299 IQPLIKNAAKIQINFWDQIQDIKKYQELKINQIVFNYSENFDSFWSNYLLRNLIKLVFAH 358 Query 361 KYSEIFRLSGKLAKWDEVVEAYKENKSVKIDGFLYELNQGKMKKTKNPATSQFNKIHFFL 420 KY+EIF+LSGKLA W ++ AYKENKS+ I+ L+ELNQ K K N +T NKI FFL Sbjct 359 KYNEIFKLSGKLANWSQLTYAYKENKSITINQLLHELNQKKSKANFNNST---NKISFFL 415 Query 421 RAWNDKKGIAVGNKFKSVWQKLKEKKVYFDFETISSAVRVIDKSLPFTQIVTQCSLIVDD 480 AWN +KG A+GNKFK+ W KLK+KKVYFDFETISS++R+I+ SLPF+QIVTQCSLIVD Sbjct 416 EAWNSEKGFAIGNKFKNTWNKLKKKKVYFDFETISSSIRIINNSLPFSQIVTQCSLIVDK 475 Query 481 NTESDKSKLVCQNLIFDPLTIGIEDFKTVVDALYQKQCDQYSFVVYNKSFEKNRLLEMAT 540 N DK KL C+NLIFDPL I + DFK V+D+LYQ C YSFVV+NKSFEKNRLLEMAT Sbjct 476 NEIDDKRKLNCENLIFDPLFISVNDFKKVIDSLYQNNCSDYSFVVFNKSFEKNRLLEMAT 535 Query 541 FINEAPYQQRVQAIIENLFDLADIFGLENDCLAFKQLDGFSSIKKVLPMIDQRFLDASRT 600 INE Y+++V+AI++NLFDLADIF +EN+CLAFKQL+GFSSIKKVL +ID+ FL AS++ Sbjct 536 LINEQIYKEKVKAIVDNLFDLADIFTIENNCLAFKQLNGFSSIKKVLTIIDESFLKASKS 595 Query 601 VSYQSLKVQKGDVAQELTLARFLNCLDEQQWAQTALELKQYCENDVRAMIAIELFIKDFI 660 + YQ+LK+QKGDVAQE+ L+RFLNCL++ +W Q A ELK+YCENDVRAMI+I LFI+D I Sbjct 596 IGYQNLKIQKGDVAQEVALSRFLNCLNKNEWNQVAFELKKYCENDVRAMISIVLFIQDLI 655 Lambda K H a alpha 0.321 0.137 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 81817260 Query= gi|13508284|ref|NP_110234.1| ribonuclease III [Mycoplasma pneumoniae M129] Length=282 Score E Sequences producing significant alignments: (Bits) Value gi|12045228|ref|NP_073039.1| ribonuclease III (rnc) [Mycoplasma g... 387 4e-139 >gi|12045228|ref|NP_073039.1| ribonuclease III (rnc) [Mycoplasma genitalium G-37] Length=262 Score = 387 bits (995), Expect = 4e-139, Method: Compositional matrix adjust. Identities = 184/261 (70%), Positives = 223/261 (85%), Gaps = 0/261 (0%) Query 1 MKNKKDKTQKPKVIDEKFVAFFKSLNIEPQNWQFYEDAFVHSSYVNENEDARASYDRLEF 60 MKNK K + K+ D+K F K+L+I P NW+F+E AF+H+SY+NE+ED SYDRLEF Sbjct 1 MKNKVLKLKNNKIFDKKLATFLKNLDIFPNNWEFFEKAFIHASYINEHEDVSESYDRLEF 60 Query 61 LGDALIDFIVAKKLFELYPNYNEGMLTRTKIEIVKGENLNRIGKELNFGNFIKLGKGMPY 120 LGDALIDF+VAKKLFELYP YNEG+LTRTKIEIVKGENLNRIG EL G+F+KL G Sbjct 61 LGDALIDFVVAKKLFELYPKYNEGLLTRTKIEIVKGENLNRIGMELKLGDFVKLSNGAEL 120 Query 121 TETLFGDVLEALVAAIYEDLGIEKANQFVEEHIFKKTYSEILKYNFFSLFQEQKLPEPRV 180 TE GDVLEALV AIYED+G++KA +FVE++IF++T+SEILKY+FFSLFQEQKLPEPRV Sbjct 121 TENTVGDVLEALVGAIYEDMGMKKATEFVEKYIFERTFSEILKYDFFSLFQEQKLPEPRV 180 Query 181 RVSLTSNNLVLSIIELNGDIIWSQAVPNSKHYDDKSVLEHNAMSAFTQFLKSGKGINFFS 240 RVSLTSNNLVLSIIEL+GDIIWSQA+PN+K+YDDKSVLEHNAM++FT FLKS KG +FFS Sbjct 181 RVSLTSNNLVLSIIELDGDIIWSQAIPNNKNYDDKSVLEHNAMASFTSFLKSSKGSHFFS 240 Query 241 DIKNKLDSQKPMRALTVRPKK 261 D+K K+++QK + L ++PKK Sbjct 241 DLKEKIENQKMCKKLAIKPKK 261 Lambda K H a alpha 0.317 0.135 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30359529 Query= gi|13508285|ref|NP_110235.1| fatty acid/phospholipid synthesis protein PlsX [Mycoplasma pneumoniae M129] Length=328 Score E Sequences producing significant alignments: (Bits) Value gi|12045229|ref|NP_073040.1| fatty acid/phospholipid synthesis pr... 551 0.0 >gi|12045229|ref|NP_073040.1| fatty acid/phospholipid synthesis protein (plsX) [Mycoplasma genitalium G-37] Length=328 Score = 551 bits (1421), Expect = 0.0, Method: Compositional matrix adjust. Identities = 270/328 (82%), Positives = 303/328 (92%), Gaps = 0/328 (0%) Query 1 MAFRLAVDCLGFENHPREAIDAVLEYWSYHQELEFILVGDEKTFDGLDYLPKNITKQLAS 60 MAFR AVDCLGFEN P EAI+AVL+YWS+HQ+L FIL+GDEK FDGLD LPKNITK+LA+ Sbjct 1 MAFRFAVDCLGFENKPSEAIEAVLKYWSFHQDLNFILIGDEKAFDGLDILPKNITKKLAN 60 Query 61 SCIDMTDTPLTARRKVNNSMQKAINLVRDGAADVVISAGSSAVYASLTYDGFGKIHKDVK 120 S I+MTDTPL+ARRKVN+SMQ AINLVR+G ADVVISAGSSAVYASLT D FGKI+K+ K Sbjct 61 SFIEMTDTPLSARRKVNSSMQIAINLVREGNADVVISAGSSAVYASLTNDAFGKINKNTK 120 Query 121 SAFMSYVPTANNDWFYFLDVGANKNFTGKELYFLGLMADIFVKKTTNKISPRIALLNIGT 180 SAFMSYVPT NN+WFYFLDVGANK FTGKELYFLGLMADIFVKKTT K +P+I LLNIGT Sbjct 121 SAFMSYVPTDNNNWFYFLDVGANKYFTGKELYFLGLMADIFVKKTTTKKTPKIGLLNIGT 180 Query 181 EIHKGFDYHQEGYQLLNEDKHLNFTGFIEPRFLLDGVCDILVADGYSGNLVLKSMEGTFK 240 E +KGFDYHQE ++LL DK+LNF GF+E RFLLDG+CDIL+ADGYSGNLVLK+MEGTFK Sbjct 181 EENKGFDYHQEAFKLLKADKNLNFLGFVESRFLLDGICDILIADGYSGNLVLKAMEGTFK 240 Query 241 TIARLLKQGYKRNPLAGLFSLGILKRIAKRFDYKNNAGAVVIGLNKLALKTHGSADKQQF 300 TIAR+LK+GYKRNPLAGLFSLGI+K +AK+FDYKNNAGAVV+GLNKLALKTHGSADKQQF Sbjct 241 TIARILKRGYKRNPLAGLFSLGIIKSVAKKFDYKNNAGAVVMGLNKLALKTHGSADKQQF 300 Query 301 LSTIRLAHTSLKSDLINAIKSSLDNYEK 328 LSTIRLAH SLKSDLINAIK+SL+NYE+ Sbjct 301 LSTIRLAHLSLKSDLINAIKTSLNNYEE 328 Lambda K H a alpha 0.321 0.138 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36382205 Query= gi|13508286|ref|NP_110236.1| dihydroacetone kinase [Mycoplasma pneumoniae M129] Length=558 Score E Sequences producing significant alignments: (Bits) Value gi|12045230|ref|NP_073041.1| hypothetical protein MG369 [Mycoplas... 894 0.0 >gi|12045230|ref|NP_073041.1| hypothetical protein MG369 [Mycoplasma genitalium G-37] Length=557 Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/558 (77%), Positives = 491/558 (88%), Gaps = 1/558 (0%) Query 1 MSTVNLSNFIDMLRLGCKNIANNFEYINQLNVFPVPDGDTGTNMKVTLSEAFKKLESEIS 60 MS+VNLS+FIDMLRLGC NIA N+EYINQLNVFPVPDGDTGTNMKVT++EA KKLE+E S Sbjct 1 MSSVNLSSFIDMLRLGCNNIAKNYEYINQLNVFPVPDGDTGTNMKVTITEAIKKLENEKS 60 Query 61 HIKSFSDLGKSFTRDLLLFSRGNSGVIFSQIMKGFFSDMISTKTATETELGIEDFATAFI 120 HIKSFS+LGK+FTRDLLLFSRGNSGVIFSQIMKGFFS++I KT+ +EL IED A AFI Sbjct 61 HIKSFSELGKNFTRDLLLFSRGNSGVIFSQIMKGFFSNIIVNKTSNNSELSIEDVANAFI 120 Query 121 KAEEVAYKNVSKPVEGTMLTVIRLISTDFKNQKNRAKTVQKLFEQVIKTAWQTVKKTPQM 180 A+EVAYKNVSKPVEGTMLTV RLIS +FK+QKNR KT++KLFEQ +K AWQ VKKTPQM Sbjct 121 VAQEVAYKNVSKPVEGTMLTVARLISNEFKSQKNRPKTLEKLFEQAVKVAWQAVKKTPQM 180 Query 181 LPVLKASGVVDSGAYGFACFLEGMLSFYGEKATLNDGKLTSAELSQMTISGEKHVTEEEF 240 LPVLKASGVVDSGAYGFACFLEGMLS+YG ++ L+D L++ E+ + E+H E+EF Sbjct 181 LPVLKASGVVDSGAYGFACFLEGMLSYYGGESNLDDNTLSTIEI-KFNKFKEQHANEDEF 239 Query 241 GYCTEYVLKLGMSVSQEVEKQKFNQKKFESKVSKIATSVVVASDKDNGFVKVHAHTEKPN 300 GYCTEYVL+LG+ ++Q VEKQKF+QKKFESKV++IA SVV+ASDKDNGFVKVHAHT KP+ Sbjct 240 GYCTEYVLRLGLKINQTVEKQKFHQKKFESKVNRIANSVVIASDKDNGFVKVHAHTLKPH 299 Query 301 LLLELGLNYGEFELVKIENMNLQVAKQKPAPVKRNIKPAIVVTVPTEAFADRIREDYDIQ 360 LLLE+GLNYGEFE VKI+NMNLQV + +P KR +KPAIV TVPTEAFA+RIRED+DI Sbjct 300 LLLEMGLNYGEFEFVKIDNMNLQVNNKNNSPTKRVLKPAIVATVPTEAFAERIREDHDIN 359 Query 361 AILCTDDTGAPSVFSLLEAVKLTHSSNIIFLLHDKNYFLSANEALKQLKHQKISADCVMT 420 AILCTDDTGAPSVFSLLEAVKLT+SSN+IFLLHDKNYFLSANE +KQLKHQKI+AD V+T Sbjct 360 AILCTDDTGAPSVFSLLEAVKLTNSSNVIFLLHDKNYFLSANETIKQLKHQKINADYVIT 419 Query 421 TNPIESLAALTVFNSDLNIHTNVKTMRRFVKGFASATITQASKKYKENRIEVNKGDFIAV 480 NP+ES+AALTVFNSDL+IHTNVK M+RF+K FASATITQASK YKEN++ VNK DFIAV Sbjct 420 ANPVESIAALTVFNSDLSIHTNVKAMKRFIKEFASATITQASKSYKENKVMVNKNDFIAV 479 Query 481 ANNSICVSEKELVQCVFNTIDHLLKKVKKPEFLLAYYGKDITAEEAEAMKEKIEKKYKLF 540 N SI SE +L C F TID L KKVKKPEFLLAYYGKDIT ++A+ M+ +EKKYKLF Sbjct 480 TNKSIIASESQLTDCFFKTIDILSKKVKKPEFLLAYYGKDITEQDAKKMQALVEKKYKLF 539 Query 541 CEFSPGEQKVFSYILGIQ 558 CEFSPGEQKVFSYI+GIQ Sbjct 540 CEFSPGEQKVFSYIIGIQ 557 Lambda K H a alpha 0.317 0.132 0.363 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 67440807 Query= gi|13508287|ref|NP_110237.1| pseudouridine synthase [Mycoplasma pneumoniae M129] Length=326 Score E Sequences producing significant alignments: (Bits) Value gi|12045231|ref|NP_073042.1| hypothetical protein MG370 [Mycoplas... 416 1e-148 gi|12045061|ref|NP_072871.1| sfhB protein, putative [Mycoplasma g... 75.9 2e-17 >gi|12045231|ref|NP_073042.1| hypothetical protein MG370 [Mycoplasma genitalium G-37] Length=323 Score = 416 bits (1069), Expect = 1e-148, Method: Compositional matrix adjust. Identities = 197/318 (62%), Positives = 244/318 (77%), Gaps = 0/318 (0%) Query 5 KFVVPKAVENVRIEKFCLKLLPNIKLSQFFKLLRLGKVLLNNTKAKLGQRVSSGDTIVFQ 64 KF+VPK EN RI++FCLK+LP IK S FFK LRLGKVLLN TK ++ R+ + D I F Sbjct 6 KFLVPKESENQRIDQFCLKILPLIKRSDFFKYLRLGKVLLNKTKPQVNTRLKTKDEIAFL 65 Query 65 FAIEPYLHNHSEVVDLTQVQDDLQVIFEDEQLIVVDKPAGVVCQPDAKHELFNLANSLLK 124 F I PYL +++ + L V+D L++IFEDE +IVVDKP G+VCQPD KH + NL+N LLK Sbjct 66 FDINPYLQTNNDYLSLDLVKDKLKIIFEDENIIVVDKPTGIVCQPDKKHSIINLSNMLLK 125 Query 125 HCGYNQYFKNSLSFIPRFAHRIDRNTCGLVIGAKTNQALQELEAVFRHNLLMKQYQGLVF 184 HCGY Q+ N L+F P+FAHRIDRNT G+VIGAKTN+AL+EL VF++N L K+Y+GLVF Sbjct 126 HCGYRQFDSNKLNFYPQFAHRIDRNTSGIVIGAKTNKALKELNKVFKNNHLTKRYKGLVF 185 Query 185 GPFNFKGTQKAYWAKDAYQALVTVKAKPFPNAKPITTIFENSKYLTKLDLSLLTIRLVSG 244 G FN G Q AYW KD +VTVK KPFP AK I+T FENS Y+ + D+SL+TIRL+SG Sbjct 186 GQFNHLGLQTAYWKKDNNNGIVTVKWKPFPEAKKISTFFENSSYIAQKDMSLITIRLISG 245 Query 245 KTHQIRACLNLLNTQLVGDRKYQLLQFKNRNRDFKHQALHATNLSFAQLDKQKFPLLANY 304 +THQIRACLNL + QLVGD+KY L+QFKNRN +KHQALHA L F +L+ KFP+L NY Sbjct 246 RTHQIRACLNLFSNQLVGDKKYSLIQFKNRNNKYKHQALHAYELVFPKLETSKFPILTNY 305 Query 305 SQRQFKSQLVPWFASLIK 322 S QFKS++VPWF LI+ Sbjct 306 SLMQFKSKIVPWFEYLIQ 323 >gi|12045061|ref|NP_072871.1| sfhB protein, putative [Mycoplasma genitalium G-37] Length=308 Score = 75.9 bits (185), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 80/298 (27%), Positives = 145/298 (49%), Gaps = 45/298 (15%) Query 43 LLNNTKAKLGQRVSSGDTIVF--QFAIEPYLHNHSEVVDLTQVQD---DLQVIFEDEQLI 97 L+ N + K+ ++++ ++++ I+ +H+ + +T V+ L+V+FED+ L+ Sbjct 31 LIMNGQIKVNEKLTFKNSLIVAKDDVIKVEIHDETTSDFITSVEPYNLKLEVLFEDKDLM 90 Query 98 VVDKPAGVVCQPDAKHELFNLANSLLKHCGYNQYFKNSLSFIPRFAHRIDRNTCGLVIGA 157 V++KP+G++ P FN SLL C ++ KN + + HR+DR+T G ++ Sbjct 91 VINKPSGLLTHPTT----FNEKASLLAACIFHNN-KNPVYLV----HRLDRDTSGAIVVC 141 Query 158 KTNQALQELEAVFRHNLLMKQYQGLVFGPFN-FKGTQKAYWA-----KDAYQALVTVKAK 211 K +L L+ ++ L + Y LV PFN G+ A A K ++ T KAK Sbjct 142 KNQASLLNLQNQLQNRTLKRYYVALVHFPFNALTGSINAPLARVNNNKVMFKIAQTAKAK 201 Query 212 PFPNAKPIT---TIFENSKYLTKLDLSLLTIRLVSGKTHQIRACLNLLNTQLVGDRKYQL 268 + IT I +N K +L+++ L++G+THQIR L + + D Y + Sbjct 202 -----QAITKFKVINQNEK------AALISLELLTGRTHQIRVHLKFIQHPVYNDPLYGI 250 Query 269 LQFKNRNRDFKHQALHATNLSFAQLDKQKFPLLANYSQRQFKSQLVPWFASLIKGVSI 326 K+ +D Q LHA + F K P+ F + L P F++ +K +++ Sbjct 251 ---KSEKKDSYGQFLHANRICFIHPTLNK-PM-------DFHAPLEPKFSTKLKSLNL 297 Lambda K H a alpha 0.323 0.137 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36099075 Query= gi|13508288|ref|NP_110238.1| phosphodiesterase [Mycoplasma pneumoniae M129] Length=325 Score E Sequences producing significant alignments: (Bits) Value gi|12045232|ref|NP_073043.1| hypothetical protein MG371 [Mycoplas... 557 0.0 gi|12045043|ref|NP_072853.1| mgpA protein (mgpA) [Mycoplasma geni... 115 2e-31 >gi|12045232|ref|NP_073043.1| hypothetical protein MG371 [Mycoplasma genitalium G-37] Length=324 Score = 557 bits (1435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 264/320 (83%), Positives = 288/320 (90%), Gaps = 0/320 (0%) Query 1 MINIDPHFIHNLTNKLKTFDNFSLYVHVNPDFDAFGAAFAFKAFLAVYFPHKKAYVMGSH 60 MI+IDP FI N + K+K FD FSL+VHVNPDFDAFG+AFAFK FL +F KKAYVMGS+ Sbjct 1 MISIDPQFIKNFSKKVKQFDKFSLFVHVNPDFDAFGSAFAFKTFLNTFFSEKKAYVMGSY 60 Query 61 NIKADGKDLFPFEAAPIDDAFVKNSLAIIFDTSNQERVLTQKHKLAKETVRIDHHPKTES 120 NI ADG++LFPFE I+D FVK SLAIIFDTSNQERVLTQKHKLAKETVRIDHHP+TE Sbjct 61 NINADGRELFPFEQTDINDDFVKESLAIIFDTSNQERVLTQKHKLAKETVRIDHHPRTEK 120 Query 121 FADLEWIDPAFSAAAEMVGYLILQMGYELNAEMAAYIYAGIITDTQRFSSSATTPQTFAL 180 FAD+EWID +FSA AEM+GYLILQMGY+LN E+A+Y+YAGIITDTQRF TTPQTFAL Sbjct 121 FADMEWIDSSFSATAEMIGYLILQMGYKLNDEIASYLYAGIITDTQRFWGPTTTPQTFAL 180 Query 181 TAKLLETGFNRNKVHDAVYLKPLLEHKYFSYVLNKAKITPNGLAYALLKKGTYKQFGVVS 240 TAKL+ETGFNRNKVHDAVYLKPLLEHKYFSYVL+KAKIT NGLAYAL+KKG YK FGVVS Sbjct 181 TAKLMETGFNRNKVHDAVYLKPLLEHKYFSYVLSKAKITKNGLAYALIKKGAYKHFGVVS 240 Query 241 PLPMVHALNNIKGVKIWTTCYFNEDIKKWIGSIRSRSIPINNFAQMFGGGGHKYAAAFVL 300 PLPMVHALNNIKGVKIWTT YFNE IKKWIGSIRSR+IPINNFAQMF GGGHKYAAAFVL Sbjct 241 PLPMVHALNNIKGVKIWTTVYFNESIKKWIGSIRSRNIPINNFAQMFNGGGHKYAAAFVL 300 Query 301 DDKRQFMKLVEIMDDFLAKQ 320 D+K QFMKLV+IMDDFLAKQ Sbjct 301 DEKNQFMKLVQIMDDFLAKQ 320 >gi|12045043|ref|NP_072853.1| mgpA protein (mgpA) [Mycoplasma genitalium G-37] Length=361 Score = 115 bits (289), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/307 (28%), Positives = 141/307 (46%), Gaps = 17/307 (6%) Query 14 NKLKTFDNFSLYVHVNPDFDAFGAAFAFKAFLAVYFPHKKAYVMGSHNIKADGKDLFPFE 73 N +K FD ++ HV PD D GA + F +K+ +G++N +LF F Sbjct 54 NAIKQFDKIVIFHHVRPDGDCLGAQQGLFHLIKANFKNKEVKCVGNNN------NLFSFI 107 Query 74 ----AAPIDDAFVKNSLAIIFDTSNQERVLTQK---HKLAKETVRIDHHPKTESF-ADLE 125 ID++F+K +LAI+ D + + R+ ++ L K +RIDHHP + Sbjct 108 NMTFTNQIDESFLKEALAIVVDANYKNRIELRELLDKNLFKAVLRIDHHPNEDDLNTSFN 167 Query 126 WIDPAFSAAAEMVGYLILQMGYELNAEMAAYIYAGIITDTQRFSSSATTPQTFALTAKLL 185 +++ ++ A E + + + + A +Y GI TD+ RF S T+ +T L A L Sbjct 168 FVEESYVACCEQIVEMATVAKWTIPPVAATLLYIGIYTDSNRFLYSNTSYRTLYLAAILY 227 Query 186 ETGFNRNKVHDAVYLKPLLEHKYFSYVLNKAKITPNGLAYALLKKGTYKQFGVVSPLPMV 245 + + VHD + L + K+ YV N K + + KK + V Sbjct 228 KAKADIRIVHDHLNHTSLADLKFKKYVYNHFKTQGQVIYFICTKKIQKRLRMTADQCARV 287 Query 246 HALNNIKGVKIWTTCYFNEDIKKWIG-SIRSRSIPINNFAQMFGGGGHKYAAAFVLDDKR 304 + L+NI KIW +F E I +RS I + + A +GGGGH A+ ++ +K+ Sbjct 288 NLLSNIADYKIWL--FFIEQANNEIRIDLRSNGINVRDIAIKYGGGGHNNASGAIITNKK 345 Query 305 QFMKLVE 311 Q +V Sbjct 346 QISDVVS 352 Lambda K H a alpha 0.323 0.137 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 35957510 Query= gi|13508289|ref|NP_110239.1| Thiamin biosynthesis protein [Mycoplasma pneumoniae M129] Length=387 Score E Sequences producing significant alignments: (Bits) Value gi|12045233|ref|NP_073044.1| NTP-utilizing enzyme (GuaA family) [... 514 0.0 >gi|12045233|ref|NP_073044.1| NTP-utilizing enzyme (GuaA family) [Mycoplasma genitalium G-37] Length=385 Score = 514 bits (1324), Expect = 0.0, Method: Compositional matrix adjust. Identities = 249/387 (64%), Positives = 307/387 (79%), Gaps = 2/387 (1%) Query 1 MGLHNEPNTILICRYGELVLKGKNRLQFVKQLKKNVKQAFKKLSITNPVDYQFDMLVVGE 60 M L++E +L+ RYGELVLKGKNR F KQLK N+K+AFKKL I N + Y+FD +VV + Sbjct 1 MELNSED--VLVARYGELVLKGKNRSYFTKQLKINIKKAFKKLEINNSIVYEFDRIVVFD 58 Query 61 VISTQRSLLKNLFTRLPGLSVCLFALQIPHDEAQLLALLQQVVQSHPSFKIEVRRRDKLF 120 + QR++L+ LF+ LPG+S+ FA QI +E +LL LL + + SFK+EV+RRDK F Sbjct 59 IKKEQRAILQELFSFLPGISLFFFASQIVREENKLLDLLFNLFKDFNSFKLEVKRRDKNF 118 Query 121 ACNSSAFKKYLALQLWEKYQLKGKLVDPAITVHVEVTKEHFLIISESFNGIGGLPVFTSG 180 A NSS FKKYLA++L+EKYQLKG + +P I ++E+ KEHFL+ +E F G GGLPV++SG Sbjct 119 AENSSNFKKYLAVKLFEKYQLKGVINNPEIIANIEILKEHFLVFTERFKGKGGLPVYSSG 178 Query 181 TALALLSGGIDSPVAASLVLQRGFNVDFITFINEPGHNAATIGKIQRLANLVSLNQTLCT 240 AL LLSGGIDSPVAASLV+QRGFN+DFITFINEP N TI KI RLANL+S N+T+C+ Sbjct 179 KALVLLSGGIDSPVAASLVMQRGFNIDFITFINEPNKNQKTIEKITRLANLISFNKTICS 238 Query 241 GRLFVFDFTDLQKELSHISLEGYRIVLMRRCFYKIASLFKYDCLITGEALGQVASQTIDN 300 G+L VFDFT +QKEL HIS E YRIVLMRR FYK AS+FKYDCL+TGE LGQVASQTI+N Sbjct 239 GKLLVFDFTAIQKELIHISNESYRIVLMRRVFYKAASMFKYDCLVTGEVLGQVASQTIEN 298 Query 301 LKVIQAVVPNTFVIRPLIGLSKDKIIEWAKALGTFETSIEHHMDTCTVFAPKKPTTKAKL 360 LKVIQ+ P+TF++RPLIG SKDKIIE AK TF+ SIE H+DTC+ F+PK PTTKAKL Sbjct 299 LKVIQSATPDTFIVRPLIGFSKDKIIELAKFFNTFDISIEQHLDTCSEFSPKNPTTKAKL 358 Query 361 AIVEKLESELLFVRELIEAGVKKLQND 387 VEKLESEL+F+ +LIE GV +L ND Sbjct 359 INVEKLESELIFLNDLIEKGVSELSND 385 Lambda K H a alpha 0.323 0.139 0.398 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44440515 Query= gi|13508290|ref|NP_110240.1| hypothetical protein MPN551 [Mycoplasma pneumoniae M129] Length=281 Score E Sequences producing significant alignments: (Bits) Value gi|12045234|ref|NP_073045.1| hypothetical protein MG373 [Mycoplas... 441 5e-160 >gi|12045234|ref|NP_073045.1| hypothetical protein MG373 [Mycoplasma genitalium G-37] Length=281 Score = 441 bits (1134), Expect = 5e-160, Method: Compositional matrix adjust. Identities = 204/280 (73%), Positives = 243/280 (87%), Gaps = 0/280 (0%) Query 1 MGFTKQYKIDFDIIDNQIVLSNNYFQKHKGSFRKITGTRFGKVIGISEYETSLKTWANMV 60 MGF KQYK DFDI+DNQIVLS YF ++K F+KITGTRFGKV+G+SEYE+S KTWANMV Sbjct 1 MGFIKQYKTDFDIVDNQIVLSEQYFLRNKALFKKITGTRFGKVLGLSEYESSFKTWANMV 60 Query 61 KIYEDEFDETLSRAGQVIEPKIRDYVIAKTGFNFHSYDPKEVKWDLFPENPVFGGIPDGE 120 KIYEDEFDETL++AG +IEPKIRDYV KTGFNFHSYDPK+V++DLF ++ VFGGIPDGE Sbjct 61 KIYEDEFDETLAKAGNIIEPKIRDYVNLKTGFNFHSYDPKKVQFDLFKDDSVFGGIPDGE 120 Query 121 PVDVYGKLAYDTNAPMLEIKTTSCDSLVYKKINGNLKIVFDENGMPIVKKINGKKDSWFD 180 P+D G+LAY + PMLEIKTTSCDSL+YKKINGNLK++ DENGMPIVKK +GKKDSWFD Sbjct 121 PLDENGELAYQNDLPMLEIKTTSCDSLIYKKINGNLKMILDENGMPIVKKKDGKKDSWFD 180 Query 181 SNGKIVISPAYYCQIGLYLYLRNITKGMFAIAFLEPQDYVHPEWFEAKQRDIRLVPVQID 240 SNGKI+IS YYCQIGLYLYLRN+ KG+FAIAFL+P+DYV PE F A R+IRL+P++ID Sbjct 181 SNGKIIISTLYYCQIGLYLYLRNVNKGLFAIAFLKPEDYVLPEQFNASNREIRLIPIKID 240 Query 241 RKAFEVLTNKAQLWYNSFIRTGKSPQLTSQDWEWLRENGI 280 K F VL +KA++WY ++I TGKSP+LT D +WL+ENGI Sbjct 241 HKGFSVLVDKARIWYENYILTGKSPKLTESDIQWLKENGI 280 Lambda K H a alpha 0.320 0.139 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30216996 Query= gi|13508291|ref|NP_110241.1| hypothetical protein MPN552 [Mycoplasma pneumoniae M129] Length=269 Score E Sequences producing significant alignments: (Bits) Value gi|12045235|ref|NP_073046.1| hypothetical protein MG374 [Mycoplas... 311 6e-109 >gi|12045235|ref|NP_073046.1| hypothetical protein MG374 [Mycoplasma genitalium G-37] Length=274 Score = 311 bits (796), Expect = 6e-109, Method: Compositional matrix adjust. Identities = 159/273 (58%), Positives = 209/273 (77%), Gaps = 4/273 (1%) Query 1 MDRKIVALDINPANFFDAANDLAIWKDFFNKAQ-EKHQLVFISSCWQQTIVYLLDLLSLN 59 MDRKIV LDIN ANFF+ DL +WK+FFN Q HQLVF+SSCWQQ ++YLLDLLSL+ Sbjct 1 MDRKIVVLDINTANFFNTTKDLEVWKNFFNFIQANNHQLVFMSSCWQQAVLYLLDLLSLD 60 Query 60 NVDVIAESGAITWFCKTNQYDYQAFLDLASINVIIHHAVITNSGIFTMGKSRVDDTANLS 119 +VD+IAESGAI W KTN++ YQ+FLD SI+ I+HHA+ITNSG+F +GKS++ + N + Sbjct 61 DVDIIAESGAIIWISKTNEFIYQSFLDSVSIDTIVHHAIITNSGVFAIGKSKISEEPNTT 120 Query 120 ANYFISLQKYKDFKSLWLTDFEQTLKYENFLKQLGKLELSSIYVFSPQYHMDLAFIDQIA 179 NYFISL+KYK FK +WLT+F+QTLKY+NFLK L ++++SSIYVFSPQYH+D ++ I+ Sbjct 121 INYFISLEKYKQFKLIWLTEFDQTLKYQNFLKNLSEMDVSSIYVFSPQYHLDFQLMEHIS 180 Query 180 SGQPRFTHSNFYPNNLLFTSNKVTKFNALEKYTKTQGLMLKDVHYINLDETLVQNSEQLA 239 SGQP+F +SNFY N LFTS K +KF+ALE Y K++ LKDVHY+N+ E + N QLA Sbjct 181 SGQPKFHYSNFYNENFLFTSTKNSKFSALETYVKSKNCSLKDVHYLNVTEVPINNINQLA 240 Query 240 SAVFIKKQ---NNEGLTVQDIPDVLQKLCAQLL 269 S VF+ K+ N+E +I VL+ +C QL+ Sbjct 241 SVVFLSKKQPDNDEEFNNPEISIVLKGICEQLM 273 Lambda K H a alpha 0.322 0.135 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28506600 Query= gi|13508292|ref|NP_110242.1| threonyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=564 Score E Sequences producing significant alignments: (Bits) Value gi|12045236|ref|NP_073047.1| threonyl-tRNA synthetase (thrS) [Myc... 805 0.0 >gi|12045236|ref|NP_073047.1| threonyl-tRNA synthetase (thrS) [Mycoplasma genitalium G-37] Length=564 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/564 (66%), Positives = 459/564 (81%), Gaps = 0/564 (0%) Query 1 MLAGVLLLQSWLKANYPQVQFGSYGVQEGEFYLDFKVEKSFSIKEFEQLEQDLNAYFNQL 60 MLAGVLLLQ WLK Y VQFG +G EFYLDF + ++FS K+F ++E DLN+ ++L Sbjct 1 MLAGVLLLQIWLKCKYANVQFGEHGFNGDEFYLDFYINENFSTKQFAKIESDLNSLSSKL 60 Query 61 NNVVQTKIDKTKSLKFFQADPFTTTLIESIESNSLVVTTVNEQTFWVHDLVLPLPKQGFV 120 + Q + ++L FF+ D FT L++ N +T + FW+ DL L K+ F+ Sbjct 61 EGISQKFVSLDEALSFFENDQFTKNLLKKSNLNKFKITFFENKHFWIEDLTLTFIKKSFI 120 Query 121 KLLNVSANYFLGDPTKPQLQRLVGIFAASKEQLKSLIAANEQKYQNDHRAIGKRLEIFTF 180 KLLNVS NYFLGDP++ QLQR+ GIFA SK++L+ LI NE++ + DHR++GK+LE+F+F Sbjct 121 KLLNVSVNYFLGDPSQLQLQRINGIFAQSKKELEQLIKENEERLKKDHRSLGKQLELFSF 180 Query 181 DPLVGAGFPIWLEKGAVLKKIIGDFVHYQQLMFGFKTVSSPVLANLELYKISGHYVHYSE 240 DPL+GAG PIWL KG L+ IIG+FVH+QQL+FGF TV SPVLAN+EL+KISGHY HY E Sbjct 181 DPLIGAGLPIWLAKGTTLRNIIGNFVHHQQLLFGFNTVCSPVLANIELFKISGHYQHYKE 240 Query 241 DMFPSVKLENQMMMLRPMTCPHHCLIFKHKRRSYKELPQRFCEDSILHRFEASGGLTGLE 300 DMFP++KL++Q MMLRPMTCPHHCLIFK KR SYK++PQRF EDSILHRFEASGGL GLE Sbjct 241 DMFPAIKLDSQAMMLRPMTCPHHCLIFKQKRYSYKKMPQRFSEDSILHRFEASGGLIGLE 300 Query 301 RVRCMTLLDNHIFCRTDQIKAEIKNAFKLIQTVNNKFGFSFDRIDLALHDPNNKAKFIDN 360 RVRCMTLLDNHIFCR DQIK+EIKNAF LIQ VN KFGF FDRIDL+LHDP N++KFIDN Sbjct 301 RVRCMTLLDNHIFCRADQIKSEIKNAFNLIQKVNKKFGFIFDRIDLSLHDPKNQSKFIDN 360 Query 361 DQLWANSESQIESVFKELNVPYKIDVGAAAFYGPKIDFQFKTALNKMITIATIQLDFLLP 420 LW SESQ+E+V K+LN+ Y+ ++GAAAFYGPKIDFQFKT KMITIATIQLDFLLP Sbjct 361 PGLWRESESQMENVLKDLNIQYQKEIGAAAFYGPKIDFQFKTIFKKMITIATIQLDFLLP 420 Query 421 ERFELRYFDEQSNAQTPVIIHVGIVGTYERFIAALLEKTHGNLPLWMAPVQVVVIPVNID 480 E+F+L Y D+++ + PVIIHVGI+GTYERFIAALLEKT GN PLW+APVQ V+IPVNI Sbjct 421 EKFDLTYIDKKNTLKKPVIIHVGIIGTYERFIAALLEKTSGNFPLWLAPVQAVIIPVNIQ 480 Query 481 KHEKAAKKLYQKLLKENIRVSLDESEDRLGKKVRTAIVNKIPLQIIVGDKEMQDLTRITC 540 KH KAAKKLY KLLKENIRV+LD+++DRL KKVR AI+ KIPLQ+IVGDKE+++L ++TC Sbjct 481 KHLKAAKKLYNKLLKENIRVNLDDNQDRLAKKVRQAIIEKIPLQLIVGDKEIENLEKLTC 540 Query 541 RGFKGEKVQKLYWANFVKKVRKDG 564 RGFKGEK+ ++ + NFVK+VR+DG Sbjct 541 RGFKGEKITRISFNNFVKRVRRDG 564 Lambda K H a alpha 0.322 0.138 0.407 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 68278581 Query= gi|13508293|ref|NP_110243.1| hypothetical protein MPN554 [Mycoplasma pneumoniae M129] Length=104 Score E Sequences producing significant alignments: (Bits) Value gi|12045237|ref|NP_073048.1| hypothetical protein MG376 [Mycoplas... 158 7e-54 >gi|12045237|ref|NP_073048.1| hypothetical protein MG376 [Mycoplasma genitalium G-37] Length=104 Score = 158 bits (400), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 76/103 (74%), Positives = 91/103 (88%), Gaps = 0/103 (0%) Query 1 MLNRVFLEGEIESSCWSVKKTGFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKK 60 MLN VFLEGEIES+ WS KKTGFLVTIKQ R FGER FTD++V YANGQLA+ELE +T+K Sbjct 1 MLNCVFLEGEIESTKWSHKKTGFLVTIKQKRLFGERSFTDFFVFYANGQLAFELEAYTQK 60 Query 61 YKTISIEGILRTYLERKSEIWKTTIEIVKIFNPKNEIVIDYKE 103 +KTISIEGILRTYLE++S IWKTTIE+VKI P ++++IDY+E Sbjct 61 FKTISIEGILRTYLEKRSGIWKTTIEVVKIMKPNSKVMIDYQE 103 Lambda K H a alpha 0.322 0.139 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6631785 Query= gi|13508294|ref|NP_110244.1| hypothetical protein MPN555 [Mycoplasma pneumoniae M129] Length=193 Score E Sequences producing significant alignments: (Bits) Value gi|12045238|ref|NP_073049.1| hypothetical protein MG377 [Mycoplas... 341 3e-123 >gi|12045238|ref|NP_073049.1| hypothetical protein MG377 [Mycoplasma genitalium G-37] Length=193 Score = 341 bits (874), Expect = 3e-123, Method: Compositional matrix adjust. Identities = 163/193 (84%), Positives = 181/193 (94%), Gaps = 0/193 (0%) Query 1 MATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIV 60 MATNLKS AKL KPIQYD+VIEV+RIFADPAFIEQHRQRILASFKDAKESALYHELTHIV Sbjct 1 MATNLKSIAKLQKPIQYDKVIEVDRIFADPAFIEQHRQRILASFKDAKESALYHELTHIV 60 Query 61 IKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQGAEDNTVQAIAEKIIKKALVF 120 IKDNLFS AMN IV YFEF I+ ELKNV+EGLKRDV++ A++ T+Q+IAEKIIKKALVF Sbjct 61 IKDNLFSAAMNEIVSYFEFQINPEELKNVVEGLKRDVVKDADEKTIQSIAEKIIKKALVF 120 Query 121 NHLQKEWKVEITDEVVKNVISLYYEKTNQSVREYLDDKQKFEGVRTALLEERMVLETINH 180 N LQKEWKVE++D++VK VISLYYEKTNQ+VREYLDDKQKFEG+RTAL+EERMVLETINH Sbjct 121 NFLQKEWKVEVSDDIVKRVISLYYEKTNQNVREYLDDKQKFEGIRTALIEERMVLETINH 180 Query 181 FKFHFNLTGQLPN 193 FKFHFNLTGQLP+ Sbjct 181 FKFHFNLTGQLPS 193 Lambda K H a alpha 0.319 0.135 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 18286095 Query= gi|13508295|ref|NP_110245.1| arginyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=537 Score E Sequences producing significant alignments: (Bits) Value gi|12045239|ref|NP_073050.1| arginyl-tRNA synthetase (argS) [Myco... 726 0.0 >gi|12045239|ref|NP_073050.1| arginyl-tRNA synthetase (argS) [Mycoplasma genitalium G-37] Length=537 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/537 (63%), Positives = 419/537 (78%), Gaps = 0/537 (0%) Query 1 MLFINTDLQECLNALNLEFDEHKELVKLVKNNSFSGFASTVVFHLKGVNQKETAQQIAAW 60 M FI DL+EC++AL L+FD+ KELVKLVKNNSF+GF+ST++F LK N K+ A I W Sbjct 1 MFFIINDLKECISALKLKFDDQKELVKLVKNNSFNGFSSTIIFQLKSENHKKIADSIVEW 60 Query 61 LLKHKKAHYRRVFVANNNFINFEISPQKYLDFLKTKPTFAPKPTKVLIEWVSANPTGELH 120 LK+KK +Y+ VF+ANNNFINF+IS QKYL++L P F K K+LIE VSANPTG +H Sbjct 61 FLKNKKDNYQNVFIANNNFINFQISYQKYLEYLIKTPCFTKKNIKILIESVSANPTGRIH 120 Query 121 LGHVRNAFFGHVLNNLMVFLGFQTVREYWVNDYGQQARVFGFSVYQALHLQQNIKVTPHP 180 LGHVR AFFG VLNNL LG+ TV EYWVNDYGQQARVF FSVYQ+L L++NI + HP Sbjct 121 LGHVRIAFFGDVLNNLAKLLGYTTVCEYWVNDYGQQARVFSFSVYQSLQLKKNIAIQQHP 180 Query 181 DGYEGELVDSIAKTITGIPLDKLSFEEFLQQPFLDQLLADCTAKVLEVIKQDLATIHIHF 240 DGY G ++D IA I P+D L+FEEF + FLD L +CT KVL +IK DL IH+ Sbjct 181 DGYSGIVIDKIASEIENFPVDNLNFEEFCKTSFLDHFLVNCTQKVLSLIKSDLNKIHVFI 240 Query 241 DSWKFESQVVKETDYKKLLTQFKDEAHYEKDGAIWLKTTLYGDDKDRVLVRQDNRPSYFG 300 DSWKFES++VK+T++ LL Q K +++ +D A+WLKTTLYGDDKDRVL+R D R SYFG Sbjct 241 DSWKFESEIVKKTNFNDLLEQLKPNSYFYQDNALWLKTTLYGDDKDRVLIRSDKRASYFG 300 Query 301 TDVAYHLDKAARGFDLLYDIWGSDHEGHIKRMHCVYEGLKIHQKCQLKITALQLVMLYKN 360 TDVAYHL+K RGFD+L+++WG+DHEGHIKRM+C ++ LK K LKI ALQLV LYKN Sbjct 301 TDVAYHLEKLQRGFDILFNVWGTDHEGHIKRMYCAFDALKNTTKTSLKIFALQLVTLYKN 360 Query 361 KEIVRLSKRAGNVITIKQMLQMLSEDAARWFMLSQTNNSIIKIDLDTANLQNSSNPVYYV 420 KE+VRLSKRAGNVITI+ ML M+SEDAARWFMLSQ N +IIKIDLD ANLQNS+NPVYYV Sbjct 361 KELVRLSKRAGNVITIETMLSMISEDAARWFMLSQNNGTIIKIDLDIANLQNSANPVYYV 420 Query 421 QYAYARMCSVLKVVDQAALAQVNDCSLLTHEKEIALLDQLVYFKSLLEKVQVSHELHLLT 480 QYA+ARM S+L++ + L ++ DCSLL +EKEI+LL+QLVY+ +L+K + ELHLLT Sbjct 421 QYAFARMNSILRIANSDQLKEITDCSLLINEKEISLLNQLVYYPFMLQKAMETGELHLLT 480 Query 481 NYLYETATLFHSWYKACKINDPAQYNLTQQRLLLLQSLHHVFGQLLQILNITAPQQM 537 N+LYETA+LFHSWYK CKIND L+ QRL LL+SL + Q+L +L I+ PQQM Sbjct 481 NFLYETASLFHSWYKVCKINDDKNSLLSAQRLALLRSLQFIVKQILDVLKISTPQQM 537 Lambda K H a alpha 0.322 0.136 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 64508598 Query= gi|13508296|ref|NP_110246.1| NADH-binding oxidoreductase GidA [Mycoplasma pneumoniae M129] Length=612 Score E Sequences producing significant alignments: (Bits) Value gi|12045240|ref|NP_073051.1| glucose-inhibited division protein A... 895 0.0 >gi|12045240|ref|NP_073051.1| glucose-inhibited division protein A (gidA) [Mycoplasma genitalium G-37] Length=612 Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/612 (70%), Positives = 517/612 (84%), Gaps = 0/612 (0%) Query 1 MSFTLTVIGGGHAGLEAAFIASKLGLKVNLLVLDPNHVGSCPCNPAIGGPAKGIVTREID 60 MSF +TVIG GHAGLEAAFI SK +KVNLLVLD NH+GSCPCNP+IGGPAKGIVTREID Sbjct 1 MSFIITVIGAGHAGLEAAFIVSKFNIKVNLLVLDINHLGSCPCNPSIGGPAKGIVTREID 60 Query 61 VLGGMQGKAADATALQYKLLNSSKGPAVQAIRAQIDKIAYQKWFRQQIDQTPNIELIAGE 120 VLGGMQ AAD ALQYKLLNSSKGPAVQAIRAQIDKI Y+ WF+ Q+ NI LI E Sbjct 61 VLGGMQAIAADNNALQYKLLNSSKGPAVQAIRAQIDKIGYKNWFQSQVKLNKNINLIQSE 120 Query 121 AVDILESNGKVKGVVLADGSELASDAVIVTTGTYLKAKTYCGSLSKEEGPDRAKRSEYLS 180 A++++ N K+KGV+L DGSEL SDAVI+TTGTYL++KTYCG+ K +GPD++K SE LS Sbjct 121 AINLIVRNEKIKGVILKDGSELLSDAVIITTGTYLRSKTYCGNTVKNQGPDQSKNSEKLS 180 Query 181 TNLIKRGFKTLRLKTGTPPRILRESLDFSQMAVEANTTPHLAFSFTTKNYLPLEQQVICH 240 TNLI RGFKT+RLKTGTPPRIL+ SLD++QM +E N +LAFS T KN+LPLE+Q+ C+ Sbjct 181 TNLINRGFKTIRLKTGTPPRILKTSLDYNQMELEINNNQNLAFSTTNKNFLPLEKQIPCY 240 Query 241 LIHTNPQIHQLILANLKQSAVFNGSIKANGPLYCPSIEDKVFRFQDKERHQIFVEPESLS 300 L+HTN +IH LIL NLK+SA+FNGSI A GPLYCPSIEDKVF+F K RHQIFVEPESLS Sbjct 241 LVHTNQKIHDLILKNLKKSAMFNGSISAQGPLYCPSIEDKVFKFSQKPRHQIFVEPESLS 300 Query 301 LETVYLAGFSTSFPPEVQEHIVRLLPGFKNARFQKYGYAIEYDAFSSIQLKSTLETKLIQ 360 L+T+YLAG STSF PE+Q+ I++LLPGF+NA +K+GYAIEYDAF S QLK TLETKLI+ Sbjct 301 LDTIYLAGLSTSFTPEIQKEIIQLLPGFQNAEIKKFGYAIEYDAFLSNQLKPTLETKLIE 360 Query 361 NLYFAGQINGTSGYEEAAGQGLIAGINAALKLQRKPEFVLQRNEAYLGVMINDLVTKEIS 420 NLYFAGQINGTSGYEEAAGQGL+AGINAALKL +KP F+LQRNEAY+GVMINDLVTK IS Sbjct 361 NLYFAGQINGTSGYEEAAGQGLMAGINAALKLLKKPPFILQRNEAYIGVMINDLVTKTIS 420 Query 421 DPYRLLTSRAEHRLWLRNDNLQERLIEKSRALGLVEADVYANYLEQQQKKKQLIDYLQTT 480 DPYRLLTSRAE+RLWLRNDN+QERLI+KS LGL + Y +L++++KK++LI +L+ T Sbjct 421 DPYRLLTSRAEYRLWLRNDNVQERLIKKSFELGLTDKKTYELFLKKEKKKQELISFLKNT 480 Query 481 TVGQIAALKLNFKNTAQTLFDFTKRAEIKLVDLVQLLPKRFDLDVQSLNQIDIDIKYAGY 540 VG++ ALK KNTAQ+L+DF KR+EI L L++ LP+++ LD ++L QI+I+IKY GY Sbjct 481 QVGKVKALKFTNKNTAQSLYDFNKRSEINLDKLIKDLPEKYQLDSETLKQIEIEIKYEGY 540 Query 541 IKKSEKYFKSLNNLSSVKIPLKLNYHKVPNLASEAIVKLSKIRPTDLSVASQVAGINFND 600 IKK+EKYFK L+ LS +KIP +YHKV NLASEAI KLS +P++L++ASQ+AG+NFND Sbjct 541 IKKNEKYFKGLDKLSKIKIPHTFDYHKVKNLASEAIFKLSNFKPSNLAIASQIAGVNFND 600 Query 601 ILAIKHFLDNHE 612 I+AIKHFL +E Sbjct 601 IIAIKHFLKTYE 612 Lambda K H a alpha 0.318 0.135 0.379 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 74581720 Query= gi|13508297|ref|NP_110247.1| methyltransferase GidB [Mycoplasma pneumoniae M129] Length=191 Score E Sequences producing significant alignments: (Bits) Value gi|12045241|ref|NP_073052.1| glucose-inhibited division protein B... 217 2e-74 >gi|12045241|ref|NP_073052.1| glucose-inhibited division protein B (gidB) [Mycoplasma genitalium G-37] Length=192 Score = 217 bits (553), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 112/191 (59%), Positives = 140/191 (73%), Gaps = 1/191 (1%) Query 1 MNNSKLKQYVQLVQTANQNFNLTGLKTEGEIYEHLVQEIIELFNEYDSYFDHKKVADLGS 60 MNN+ ++YV LV AN+NFNLTG KT+ IY++LV EI+ LF Y+ +F K VADLGS Sbjct 1 MNNANFEKYVDLVFEANKNFNLTGFKTKEAIYQNLVIEILTLFKGYEKFFIDKTVADLGS 60 Query 61 GNGCPGVILKLLFPQIKTLDLIDSKHKKVNFLKEVIQTLELNNTQALCARIENHTEQYDT 120 GNG PG+ILKLLF +IK L LIDSKHKK++FL ++ + L L T A+C RIE H YD Sbjct 61 GNGSPGIILKLLFQKIKKLVLIDSKHKKISFLNKLTKQLNLEKTVAICERIEVHKNHYDV 120 Query 121 LCSRGLGSIIEVNAFALKLLKPNGIIFHIKQSLDQYLEFEDSEQKDQFKPLFFKFFHGKR 180 +CSRGL +II+VN A LL GIIFHIKQSLDQY+EFE S QK+QF LF K F + Sbjct 121 ICSRGLSTIIKVNDLAFSLLNSKGIIFHIKQSLDQYIEFEKSNQKNQFNLLFIKHFTSQN 180 Query 181 QQ-ILIAMKKN 190 ++ ILIA++KN Sbjct 181 KKLILIALQKN 191 Lambda K H a alpha 0.320 0.138 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17998125 Query= gi|13508298|ref|NP_110248.1| hypothetical protein MPN559 [Mycoplasma pneumoniae M129] Length=235 Score E Sequences producing significant alignments: (Bits) Value gi|12045242|ref|NP_073053.1| hypothetical protein MG381 [Mycoplas... 252 3e-87 >gi|12045242|ref|NP_073053.1| hypothetical protein MG381 [Mycoplasma genitalium G-37] Length=218 Score = 252 bits (644), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 122/215 (57%), Positives = 159/215 (74%), Gaps = 0/215 (0%) Query 14 MFKLGWASFVDPELAKTAFLEFAKQFYVTSSAGAILFDLKKSQGLDQLQAIEKTRKVIIT 73 M KLGWASF + E A+ F++FA QFY AG ILF+LKK+ G++QL IEK +KVII Sbjct 1 MIKLGWASFSNTEFAQDIFIKFANQFYKQDDAGTILFELKKTLGVNQLDEIEKNKKVIIV 60 Query 74 EQFANQTGKWILFDKENTKRINSLAQEHITPLIKRILRLADFKNVLINVQHHKKLQKCLL 133 QF N GK++LF+KENTKRINSLA EHI+ +K+I RL+ FK++LI+VQHHKKLQKCLL Sbjct 61 NQFQNSLGKFLLFNKENTKRINSLANEHISSFLKKIFRLSGFKDMLIDVQHHKKLQKCLL 120 Query 134 WEINGLICLVESLQFMENPTAIMEWFQGLKKHCPNVAVVTISGQHKPVIEPSLTEYKAVF 193 EI+ L+CL+ S QF + I+EW+Q LKKH + V+T S KPVIEP++ EYKA+F Sbjct 121 REIHLLVCLINSNQFSDELMQIIEWYQYLKKHSSKLFVITASSDKKPVIEPTINEYKAIF 180 Query 194 GSSLLSFHLDATTINNSHLVRQILEQIKIKATLKS 228 G L SFHLD ++ L +++L+QIKIKAT K+ Sbjct 181 GEYLSSFHLDLKNNQSNDLFQKLLDQIKIKATSKT 215 Lambda K H a alpha 0.321 0.132 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23883839 Query= gi|13508299|ref|NP_110249.1| arginine deiminase [Mycoplasma pneumoniae M129] Length=438 ***** No hits found ***** Lambda K H a alpha 0.322 0.139 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 51317905 Query= gi|13508300|ref|NP_110250.1| uridine kinase [Mycoplasma pneumoniae M129] Length=213 Score E Sequences producing significant alignments: (Bits) Value gi|12045243|ref|NP_073054.1| uridine kinase (udk) [Mycoplasma gen... 336 1e-120 >gi|12045243|ref|NP_073054.1| uridine kinase (udk) [Mycoplasma genitalium G-37] Length=213 Score = 336 bits (861), Expect = 1e-120, Method: Compositional matrix adjust. Identities = 156/210 (74%), Positives = 185/210 (88%), Gaps = 0/210 (0%) Query 4 KKGILVAIGGGSCSGKTTIADMIYQLLRKKLKVAILPQDNYYKPYKNKSMAQRKAINFDH 63 +KGILVAI GGSCSGKTT+A+MIYQLL KKLKVAI+ QDNYYK YKNK + +RK INFDH Sbjct 3 EKGILVAISGGSCSGKTTVAEMIYQLLSKKLKVAIICQDNYYKSYKNKPLLKRKTINFDH 62 Query 64 PDAFDWKLLWSHLDNLLMGKTVAVPMYDYVNYTRKKETIEIGPLNVVILEGLMPWFDERI 123 PDAFDWKLL SH+++LL G V VP+YDY+NYTR K+T +IGP++VVILEGLMPWFDE++ Sbjct 63 PDAFDWKLLRSHIEDLLNGSIVNVPLYDYINYTRAKKTAKIGPIDVVILEGLMPWFDEKL 122 Query 124 AKLCKLKIFVEATGEERLIRRIERDWERGRDVASIIKQWREAVSPMYEIFVEKMKQKADL 183 ++L KLKIF+E GEERLIRRIERDW+RGR++ SIIKQWRE V+PMYEIFVEKMK+ ADL Sbjct 123 SRLSKLKIFIETNGEERLIRRIERDWQRGRNIDSIIKQWREIVAPMYEIFVEKMKRNADL 182 Query 184 IIPWSERHEVSTNVLDFAIEHLFRKHVDPN 213 I+PWS+R EVST+VLD AIEHLF K V+ N Sbjct 183 ILPWSQRREVSTSVLDVAIEHLFHKTVEKN 212 Lambda K H a alpha 0.322 0.138 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20951146 Query= gi|13508301|ref|NP_110251.1| probable NH(3)-dependent NAD(+) synthetase [Mycoplasma pneumoniae M129] Length=248 Score E Sequences producing significant alignments: (Bits) Value gi|12045244|ref|NP_073055.1| NH(3)-dependent NAD+ synthetase, put... 330 2e-117 >gi|12045244|ref|NP_073055.1| NH(3)-dependent NAD+ synthetase, putative [Mycoplasma genitalium G-37] Length=248 Score = 330 bits (847), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 150/245 (61%), Positives = 198/245 (81%), Gaps = 1/245 (0%) Query 4 NLLNYLNELEAWLTNYVNEAHAQGVVVGLSGGVDSAVVAAMTKKLFP-QNHLTLVMHINN 62 NL+ YL EL+ WL +YV ++ A+GV+ GLSGG+DSAVVAA+ K+ F +NHL L+MHINN Sbjct 3 NLIKYLKELQNWLFDYVKKSKAKGVIFGLSGGIDSAVVAAIAKETFGFENHLALIMHINN 62 Query 63 SELDHKATTALVEQLQLNNKQVDLEPPYRAMLQALTIDPQKELMVAGNLKARLRMACLYT 122 S+LD +AT+ LV+++Q N+ ++LE + +++ L IDP+K+ + AGN+KARLRM LY Sbjct 63 SKLDFQATSELVKKMQFNSINIELEESFNLLVKTLGIDPKKDFLTAGNIKARLRMITLYA 122 Query 123 HAQKHNYLVLGTGNFIEYSLGYFTKWGDGACDVAPLAFLLKSDVYALSQHFNVPELVIER 182 +AQKHN+LVLGTGNF+EY+LGYFTKWGDGACD+APLA+LLK DVY L++HFN+PE+VI R Sbjct 123 YAQKHNFLVLGTGNFVEYTLGYFTKWGDGACDIAPLAWLLKEDVYKLAKHFNIPEIVITR 182 Query 183 APTASLFAGQTDEAEMGLTYKELDQYFQGHLQLSATKQQRVDHLRQSSQHKRSLPKTFKP 242 APTASLF GQTDE EMG+TYKELDQY +G L LS+ KQ+ V L+ ++HK + P FK Sbjct 183 APTASLFEGQTDETEMGITYKELDQYLKGDLILSSEKQKIVLDLKAKAEHKHNSPLKFKH 242 Query 243 LYSFQ 247 LY+FQ Sbjct 243 LYNFQ 247 Lambda K H a alpha 0.319 0.132 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 25743060 Query= gi|13508302|ref|NP_110252.1| small GTPase OBG involved in cell growth [Mycoplasma pneumoniae M129] Length=433 Score E Sequences producing significant alignments: (Bits) Value gi|12045245|ref|NP_073056.1| GTP-binding protein (obg) [Mycoplasm... 692 0.0 gi|12044874|ref|NP_072684.1| GTP-binding protein, putative [Mycop... 75.9 9e-17 >gi|12045245|ref|NP_073056.1| GTP-binding protein (obg) [Mycoplasma genitalium G-37] Length=433 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/433 (81%), Positives = 394/433 (91%), Gaps = 0/433 (0%) Query 1 MGLTDYCECRFSAGNGGNGIIAWRREAHYDKGGPGGGNGGNGGNVVLQADHNCDSLFFLK 60 M +TDYCECRF+AGNGGNGIIAW+REAHYDKGGPGGGNGGNGGNV+LQADHNCDSLFFLK Sbjct 1 MAITDYCECRFTAGNGGNGIIAWKREAHYDKGGPGGGNGGNGGNVILQADHNCDSLFFLK 60 Query 61 NKKHLFAESGGNGKPDLAHGKNGEDLVIKVPVGTTVRDLDTNQILMDFVHDQQSFILCYG 120 NKKHLFAE G NGKPDLAHGKNG DL+IKVP+GTTV++L+ N +L+DFVHD+QSFILC+G Sbjct 61 NKKHLFAEDGQNGKPDLAHGKNGSDLLIKVPIGTTVKNLENNSVLVDFVHDKQSFILCFG 120 Query 121 GKGGKGNAAFKSPIMRAPNLYENGDKGQSLHVSLEIKYLANVGIVGFPNTGKSTLISKLS 180 GKGGKGNAAFKSPIMRAPNLYENGDKG+ L+VSLE+KYLANVGIVGFPN+GKSTLISKLS Sbjct 121 GKGGKGNAAFKSPIMRAPNLYENGDKGEILNVSLEVKYLANVGIVGFPNSGKSTLISKLS 180 Query 181 NAKPKIANYRFTTLVPVLGVVKHNDQSLVFADIPGLIENASEGSGLGHYFLRHIERCEIL 240 NAKPKIANYRFTTL+PVLGVVK+ + SLVFADIPGLIENASEGSGLGH FLRHIERCEIL Sbjct 181 NAKPKIANYRFTTLIPVLGVVKYQNNSLVFADIPGLIENASEGSGLGHDFLRHIERCEIL 240 Query 241 IHLISLDPVDHDDPCQAYEQIMRELSKYSQLLVKKKMLVVANKTDVDLDGTRFQKLAQYL 300 IHLISLDPVD+DDPC+AY QIM ELSKYS LLVKKKMLVVANK DV+ RF+KL ++L Sbjct 241 IHLISLDPVDNDDPCKAYLQIMDELSKYSPLLVKKKMLVVANKIDVNEGEKRFKKLEKFL 300 Query 301 ENKGIPLFKISALKQELGDLVAQVFALHQKTLAQFGANKFHLPMEMEKHYVFEQASETDH 360 + K I + KISALK+ELG+L+ +VF L+ KT++QFGANKF LPME+EKHYVF+ +E ++ Sbjct 301 QKKSISVLKISALKKELGNLLDRVFELYNKTISQFGANKFSLPMELEKHYVFQNTNENNN 360 Query 361 DPLNIERDALGRWHVECKRLHYWFDKIPQTTLDNIRRLGNKIKEVGIEDQLKVAGAKKGD 420 DPLNIE+D+L RW V CKRL YWFDKIPQTTLDNIRRLGNKIKE+GIEDQLK GAKKGD Sbjct 361 DPLNIEKDSLNRWIVNCKRLRYWFDKIPQTTLDNIRRLGNKIKEIGIEDQLKSVGAKKGD 420 Query 421 VIVFAGQEFVIND 433 +I F G EFVIND Sbjct 421 IIFFDGCEFVIND 433 >gi|12044874|ref|NP_072684.1| GTP-binding protein, putative [Mycoplasma genitalium G-37] Length=367 Score = 75.9 bits (185), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 69/131 (53%), Gaps = 24/131 (18%) Query 159 LANVGIVGFPNTGKSTLISKLSNAKPKIANYRFTTLVPVLGVVKHNDQSL---------- 208 + + GIVG PN GKSTL S ++N + +IANY F T+ P G+V +D+ L Sbjct 1 MLSAGIVGLPNVGKSTLFSAITNLQVEIANYPFATIEPNTGIVNVSDERLDKLASLINPE 60 Query 209 -------VFADIPGLIENASEGSGLGHYFLRHIERCEILIHLISL---DPVDH----DDP 254 F DI GL++ AS+G GLG+ FL +I +++ H++ + H DP Sbjct 61 KIVYTTFRFVDIAGLVKGASQGQGLGNQFLANIREVDLICHVVRCFQDKKIVHVNNTIDP 120 Query 255 CQAYEQIMREL 265 +E I+ EL Sbjct 121 VFDFEIIVNEL 131 Lambda K H a alpha 0.319 0.139 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 50614920 Query= gi|13508303|ref|NP_110253.1| similar to NADP-dependent alcohol dehydrogenase [Mycoplasma pneumoniae M129] Length=351 ***** No hits found ***** Lambda K H a alpha 0.321 0.140 0.427 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39638200 Query= gi|13508304|ref|NP_110254.1| hypothetical protein MPN565 [Mycoplasma pneumoniae M129] Length=152 Score E Sequences producing significant alignments: (Bits) Value gi|12045246|ref|NP_073057.1| hypothetical protein MG384.1 [Mycopl... 150 2e-49 >gi|12045246|ref|NP_073057.1| hypothetical protein MG384.1 [Mycoplasma genitalium G-37] Length=149 Score = 150 bits (380), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 74/140 (53%), Positives = 104/140 (74%), Gaps = 0/140 (0%) Query 1 MGREVEPIFDLVLLWFLLVPLVVYALLLLLLFFTTPYLIVEAIPFCYGIALMMISLFMSG 60 MG+E+EPIFDLVLLWFL VPL++Y L LF T Y+I E IPFCY A +I LF+SG Sbjct 1 MGKEIEPIFDLVLLWFLFVPLLIYLFLAFFLFAFTKYIIWELIPFCYSTAFTLIVLFLSG 60 Query 61 MFPQAWNVWVIFGRFVLVLVVLMLSFFVINKLTNLVLLRSRYAMVVAQGLVHTGKVKQQS 120 + P AWN W+I RF LVL+ LMLSFF++NK+TN L+RS+YA+++A+ L+ TGK K ++ Sbjct 61 IIPMAWNSWIILLRFFLVLITLMLSFFLLNKMTNFFLIRSKYAIIIAENLLKTGKSKTKN 120 Query 121 QQAMSDIKTKWDKEKSKTVV 140 +Q + I++ +++KS +V Sbjct 121 RQKLQQIQSDLERKKSAEIV 140 Lambda K H a alpha 0.332 0.142 0.428 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12943893 Query= gi|13508305|ref|NP_110255.1| Glpq or Uplq glycerophosphoryl diester phosphodiesterase [Mycoplasma pneumoniae M129] Length=237 Score E Sequences producing significant alignments: (Bits) Value gi|12045247|ref|NP_073058.1| hypothetical protein MG385 [Mycoplas... 313 1e-110 gi|12045149|ref|NP_072960.1| glycerophosphoryl diester phosphodie... 115 4e-33 >gi|12045247|ref|NP_073058.1| hypothetical protein MG385 [Mycoplasma genitalium G-37] Length=236 Score = 313 bits (801), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 153/237 (65%), Positives = 191/237 (81%), Gaps = 1/237 (0%) Query 1 MRKQFLIAHRGYSTIAPENTHLAFAAAQLFGFDGLWMEVQLTKDKQIVVTNLDNYKVGNK 60 MRKQFLIA+RGYS+IAPENT LAF AAQ+F FDG+W+++QLTKDKQIVVT+ +N+KV NK Sbjct 1 MRKQFLIAYRGYSSIAPENTKLAFQAAQVFDFDGIWIDIQLTKDKQIVVTHKENFKVSNK 60 Query 61 THKLSDINLVNLKKINLAKQFKVNVQEQTILTLKEVLMEFLTPFRFLLLFIKGEEEQQNQ 120 L+ INLV+LKK+NLA +FK+ V Q I TLKEVL +F+ PF++LL+ IK ++E N Sbjct 61 NLNLNQINLVDLKKVNLASEFKLKVTSQQIQTLKEVLTQFIQPFKYLLIHIKDDKENNNS 120 Query 121 VLVEQLAQLLEGFELAKEKLILLSSHFSTIKYLNEKLKSFKTSFVFNSKKQLVHLTKDEI 180 +L EQL L + F LAKEK+ILLSS+F IK +NE K FKT FV +KK L+ ++DE+ Sbjct 121 LL-EQLNLLCKDFVLAKEKMILLSSNFHIIKLINETFKGFKTGFVIANKKALLVASRDEL 179 Query 181 TQNCRFLAPNDSFYHKNCAELQSYGLPIILWVIKGLLRYQFYENDRFVKFQIAAQLY 237 + CRFL PN+SFYHKNC E+Q+ GLP+ILWVIKGLLRYQFYENDRFVKFQI AQ+Y Sbjct 180 MRYCRFLVPNESFYHKNCKEIQNLGLPVILWVIKGLLRYQFYENDRFVKFQITAQIY 236 >gi|12045149|ref|NP_072960.1| glycerophosphoryl diester phosphodiesterase, putative [Mycoplasma genitalium G-37] Length=244 Score = 115 bits (287), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 136/237 (57%), Gaps = 11/237 (5%) Query 3 KQFLIAHRGYSTIAPENTHLAFAAAQLFGFDGLWMEVQLTKDKQIVV----TNLDNYKVG 58 KQ L+AHRGYS IAPENT LAF A + FDG+ ++V LTKD+Q+V+ T L V Sbjct 4 KQLLLAHRGYSFIAPENTKLAFDLAFEYCFDGIELDVHLTKDEQLVIIHDETTLRTALVN 63 Query 59 NKTHKLSDINLVNLKKINLAKQFKVNVQEQTILTLKEVLMEFLTPFRFLLLFIKGEEEQQ 118 + S LV+LK+ + + F + +Q Q+ILTLKE L +L F+ + + IK +Q+ Sbjct 64 KEVEFES---LVSLKRDDHSAFFHLKIQFQSILTLKEFLDLYLDKFKLINIEIKT--DQK 118 Query 119 NQVLVE-QLAQLLEGF-ELAKEKLILLSSHFSTIKYLNEKLKSFKTSFVFNSKKQLVHLT 176 + +E +L L++G+ + A +K++ S +F +++ + + S+K F+F +KKQ ++ Sbjct 119 PYLGIEKKLVDLVKGYGKKAIDKILFSSFNFESLQKVYDLDNSYKKGFLFWTKKQFETIS 178 Query 177 KDEITQNCRFLAPNDSFYHKNCAELQSYGLPIILWVIKGLLRYQFYENDRFVKFQIA 233 I + C+FL P Y K ++ LP+ LW + ++Q + D V QIA Sbjct 179 TARIQKICQFLHPWTKIYEKYPQMIKKLNLPLNLWTVNSQNKFQQFLADNHVYAQIA 235 Lambda K H a alpha 0.323 0.138 0.393 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24169873 Query= gi|13508306|ref|NP_110256.1| similar to cyto adherence proteins [Mycoplasma pneumoniae M129] Length=1036 Score E Sequences producing significant alignments: (Bits) Value gi|12045248|ref|NP_073059.1| protein P200 [Mycoplasma genitalium ... 347 4e-102 gi|12045052|ref|NP_072862.1| dnaJ-like protein [Mycoplasma genita... 62.8 1e-11 >gi|12045248|ref|NP_073059.1| protein P200 [Mycoplasma genitalium G-37] Length=1616 Score = 347 bits (889), Expect = 4e-102, Method: Compositional matrix adjust. Identities = 187/342 (55%), Positives = 231/342 (68%), Gaps = 51/342 (15%) Query 705 SDPSFEPEVEIQPEP---EPNFDLETIPEPESIETTEPEPNFEPEVELEPEIEPNFESET 761 S+P FEP+VE QP EP+ + + ES++ ++PEP E EV+ +PEI+P Sbjct 1309 SEPQFEPQVEQQPGEAVFEPSAEAKFDSPVESVQDSQPEPLLE-EVQTQPEIQP------ 1361 Query 762 EVQQELAQESSFESEPEPNFETEVEVQPE---------SEIESKFEAEVQSEPKVSLNSD 812 ES+PE F+T VQPE S +E+ E +V SEP+V + + Sbjct 1362 -----------VESQPEATFDT---VQPEQTPQEAKFDSPVETIQEPQVSSEPEVVVQPN 1407 Query 813 FETKPEAQAEVTPETLEVEATSEAPELQPETEATKVVDDVEEEQLDWELLIGNSNYGHYE 872 FE E PET+ E +A E+QPE EEE LDWELL+GN++YGHYE Sbjct 1408 FE-------ERKPETVLEEP--QADEIQPEAS--------EEESLDWELLVGNNSYGHYE 1450 Query 873 PSGEWVWAGYFDDNQIWTPDASVEWARESDYTDLIGDEIYGRYNRKGEWIWYGYYDETGE 932 P GEWVWAG+F D+Q W DA+V+WARE DY LIGDE+YGRYN KGEWIWYG+YDE+G+ Sbjct 1451 PDGEWVWAGFFGDDQKWNKDATVKWARERDYLPLIGDEVYGRYNNKGEWIWYGFYDESGD 1510 Query 933 WVLVDEHYQNHQPRISEAPRFWEQLIGNEDYGYYEDNEWKWYDGEFDSEGNWLVFHSSNA 992 WVLVDE ++N QPRI+EAP+FWE+LIGNE+YGYYEDNEW WYDGEFDSEGNWLVF S Sbjct 1511 WVLVDEQWKNRQPRINEAPKFWEKLIGNEEYGYYEDNEWNWYDGEFDSEGNWLVFQSEET 1570 Query 993 EDAKNIDIAKDIPVFESFDVDSIDADEWLDQFSDSDAKEVFG 1034 E+ N DI KDIP E +D+DSIDADEWL QFS DAK+VFG Sbjct 1571 ENL-NEDITKDIPALEGYDIDSIDADEWLSQFSADDAKDVFG 1611 Score = 257 bits (656), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 158/390 (41%), Positives = 215/390 (55%), Gaps = 66/390 (17%) Query 18 KKYLEQSKEKTA-KAKNKDVSIDDLLKKPFLEEIKTNVLKKNKTTRASTATRGTSKVKKQ 76 KKYLE + +K+ K K + +++L +PFL EIK N+LKK K+ + SK K Sbjct 19 KKYLESANKKSVTKPKKEQDKVENLFDQPFLGEIKKNILKKTKSFNSKKKETVKSKSK-- 76 Query 77 IVESSIDFFDEKKRGVFIVPPAGTSVINDDRDDNKAVEETV-----SKTAISQNQLAHYA 131 S IDFFDE KRGVFIVPP T +++ + K V TV S I++N+L Sbjct 77 ---SPIDFFDETKRGVFIVPPE-TDILSRRELNQKTVVNTVPNQTSSYPTINENKLVELN 132 Query 132 NSELVETEQFELKPVALEHNQVLTSTRHSQERESIFEKAQLFWQIFVGDVRFGFWKNHTW 191 N Q E K + + + T+ R E++ E +Q FW IFVGD ++GFWKNHTW Sbjct 133 N-------QPETKVLETKKDSFTTTIR---EKKLNPEDSQAFWYIFVGDRKYGFWKNHTW 182 Query 192 IWLGFFDQHQNWYYFEVVETVELPQEHTAFIKRKQIDSCFWKPLVGNPNYGYIQNNIWVW 251 +WLG+FDQ Q W YF+V+ETVE+PQEH AFIK++ D FW+PLVGNPNYG++QNN W+W Sbjct 183 VWLGYFDQLQRWNYFKVIETVEVPQEHAAFIKQRPADIDFWRPLVGNPNYGFVQNNTWIW 242 Query 252 KGFFDTKLNWIPDPVRFTLPMVEKATTTTPVVQIELPAPPTVTVVDQTSPPTAAVTVSTS 311 KGFFD KLNWIPDPVRFT E+A T ++VD+ T + Sbjct 243 KGFFDKKLNWIPDPVRFT----EEALGHTD------------SLVDEIEKKTIS-----E 281 Query 312 QPVIEEQT----TVFNQTTQLEQLSVSAPLLDQSEVETEMVEVPFVAPSTTTTQPQVVTV 367 QP E++ TVFN T L + LL+ S E ++E Sbjct 282 QPYWEQENDIVVTVFN-TKSLASSLENELLLENSSEEQPVIE------------------ 322 Query 368 QAQPASSSIQFQEPIIKVEFVNESFDFKKP 397 + +P + + F+ P+ K+ F E F+F P Sbjct 323 EVKPRRNEVIFRNPVTKLHFEKEKFEFLNP 352 Score = 62.0 bits (149), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 10/88 (11%) Query 906 LIGDEIYGRYNRKGEWIWYGYYDETGEW-----VLVDEHYQNHQPRISEAP---RFWEQL 957 +GD YG + + W+W GY+D+ W + E Q H I + P FW L Sbjct 168 FVGDRKYGFW-KNHTWVWLGYFDQLQRWNYFKVIETVEVPQEHAAFIKQRPADIDFWRPL 226 Query 958 IGNEDYGYYEDNEWKWYDGEFDSEGNWL 985 +GN +YG+ ++N W W G FD + NW+ Sbjct 227 VGNPNYGFVQNNTWIWK-GFFDKKLNWI 253 Score = 60.5 bits (145), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 29/88 (33%), Positives = 45/88 (51%), Gaps = 10/88 (11%) Query 177 FVGDVRFGFWKNHT-WIWLGFFDQHQNWYYFEVVETVELPQEHTAFIKRKQIDSCFWKPL 235 +GD +G + N WIW GF+D+ +W + P+ + A FW+ L Sbjct 1484 LIGDEVYGRYNNKGEWIWYGFYDESGDWVLVDEQWKNRQPRINEA--------PKFWEKL 1535 Query 236 VGNPNYGYIQNNIWVW-KGFFDTKLNWI 262 +GN YGY ++N W W G FD++ NW+ Sbjct 1536 IGNEEYGYYEDNEWNWYDGEFDSEGNWL 1563 >gi|12045052|ref|NP_072862.1| dnaJ-like protein [Mycoplasma genitalium G-37] Length=601 Score = 62.8 bits (151), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/150 (37%), Positives = 67/150 (45%), Gaps = 46/150 (31%) Query 630 ETESKATSEAQAELDWEALIGNSEYGYFDAEQNWIWTGYFDEDNKWVSTATAQTEANAEE 689 E SK E A DWEAL+G++ YGYFD +W W GYFDE KWV Sbjct 155 ELRSKVPGEVTAS-DWEALVGDTRYGYFDETGDWSWKGYFDEQGKWVWNEPV-------- 205 Query 690 VVLTADAETSELNTESDPSFEPEVEIQPEPEPNFDLETIPEPESIETTEPEPNFEPEVEL 749 D+ETSE V ++PEP P PE S E +PE N EPE Sbjct 206 -----DSETSE------------VSVEPEPTP-----VAPE-ASFEEAQPEINAEPEASF 242 Query 750 E--PEIEPNFESETEVQQELAQESSFE-SE 776 E P EP +A E+SFE ++ Sbjct 243 ESTPTPEP-----------VAPEASFEEAQ 261 Lambda K H a alpha 0.308 0.126 0.361 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 131171804 Query= gi|13508307|ref|NP_110257.1| small GTPase ERA involved in regulating metabolism and cell division [Mycoplasma pneumoniae M129] Length=291 Score E Sequences producing significant alignments: (Bits) Value gi|12045249|ref|NP_073060.1| GTP-binding protein (era) [Mycoplasm... 360 6e-128 >gi|12045249|ref|NP_073060.1| GTP-binding protein (era) [Mycoplasma genitalium G-37] Length=290 Score = 360 bits (925), Expect = 6e-128, Method: Compositional matrix adjust. Identities = 174/290 (60%), Positives = 228/290 (79%), Gaps = 2/290 (1%) Query 1 MESIRIGVLGLTNAGKSTLVNQLHKANNLLVSPMNNTTLLAVSTNTITHEKQNITFIDVP 60 M+ +++GVLG TNAGKSTL+N LH ++L+VS MNNTTLL++ST I +NI FIDVP Sbjct 1 MKVLKVGVLGPTNAGKSTLINFLHNDDSLMVSSMNNTTLLSISTEVINQANKNIVFIDVP 60 Query 61 GFSEKRHSSYELISQEIRKALSGIDVLLLVVRSDQQQKLPLLQTQLQPLKRYRDLTRVLL 120 GF+EK+HS+YELI++EIRKALSGIDVLLLVVRSDQ K+ L+TQLQ LKRY++LTR+ L Sbjct 61 GFTEKKHSNYELITKEIRKALSGIDVLLLVVRSDQNNKIEFLKTQLQQLKRYQNLTRIFL 120 Query 121 INNFFDVVLQAEDKQAIVLDFKPQAVLETDLLHFDATSFWNQFNEVKLQANEFRKDVEFL 180 IN F L +K I+ +FKPQ +E +LL FD FW+ F +V+L+ N FRKD+ F+ Sbjct 121 INKFHQKSLSEVNKAIILEEFKPQKTIEINLLKFDKNLFWSIFKQVELRYNIFRKDINFI 180 Query 181 DADTDNFKILEALREQIIKYCSEEIPHVVRLEIVDKSFDQAKNLLKLHLSISVPKLSQKK 240 DA+ D+FKILE LREQII YC EIPH+ R+EI++KSF++ KNLLK+HL ISVPKLSQKK Sbjct 181 DANNDDFKILEGLREQIIFYCKNEIPHIARIEIIEKSFNKEKNLLKIHLVISVPKLSQKK 240 Query 241 IIIGRNAQMVKKIGMQMRQKLLEYYDCNVFVELFVRTYDPKQKKSPYGSL 290 IIIG+NA+M+K IG+ R+KLL ++DC++F+++FV+T KQK Y L Sbjct 241 IIIGKNAEMIKAIGIATRKKLLNHFDCDIFIDIFVKT--EKQKLPVYSFL 288 Lambda K H a alpha 0.320 0.136 0.375 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31392829 Query= gi|13508308|ref|NP_110258.1| predicted metalloenzyme interacting with hemolysin [Mycoplasma pneumoniae M129] Length=108 Score E Sequences producing significant alignments: (Bits) Value gi|12045250|ref|NP_073061.1| hypothetical protein MG388 [Mycoplas... 162 2e-55 >gi|12045250|ref|NP_073061.1| hypothetical protein MG388 [Mycoplasma genitalium G-37] Length=101 Score = 162 bits (410), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 74/99 (75%), Positives = 86/99 (87%), Gaps = 0/99 (0%) Query 8 MKRLNRQFLNRKGVTDVISICYNENEAGFSPAIGEIFLCPKHIFKQAKQFGCTPWFLLTR 67 MK+LN+QFL R+G TDVIS+CYNE E GFS AIGEIFLCPK+IFK+AK+ GC WFLLTR Sbjct 1 MKKLNKQFLKRRGCTDVISLCYNETETGFSLAIGEIFLCPKYIFKKAKEIGCNNWFLLTR 60 Query 68 NLIHGLLHLFEFDHEQSLAFESVTMFFQDEIHETVLKLW 106 LIHG+LHLFEF+HE+S AFESVTMFFQD IHE +L +W Sbjct 61 CLIHGILHLFEFNHEESEAFESVTMFFQDAIHEEILSVW 99 Lambda K H a alpha 0.329 0.141 0.462 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7221277 Query= gi|13508309|ref|NP_110259.1| hypothetical protein MPN570 [Mycoplasma pneumoniae M129] Length=129 Score E Sequences producing significant alignments: (Bits) Value gi|12045251|ref|NP_073062.1| hypothetical protein MG389 [Mycoplas... 159 1e-53 >gi|12045251|ref|NP_073062.1| hypothetical protein MG389 [Mycoplasma genitalium G-37] Length=127 Score = 159 bits (403), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 81/129 (63%), Positives = 103/129 (80%), Gaps = 2/129 (2%) Query 1 MKQKIIGLTLAFFVLFLTAVAILFTVKVQRYLTTSLWAKLSEQTFLVFKNEQDEAQFNQV 60 MKQKI+G+T+AF +L LT VAILF+VKV++YL +LW +Q FL+FKNE+DE FN V Sbjct 1 MKQKILGITIAFIILLLTTVAILFSVKVKQYLNVNLWTT-QQQNFLMFKNEKDENLFNNV 59 Query 61 SWTNFQAETTKKEDKKAFRLYKKKISLEQLENENQQQLFQAVNLSINLKQGWYNITILLP 120 SWTNFQAETT+K KKAFRLYKKKIS ++ +E + L + V+LS+ L+QGWYNITI+LP Sbjct 60 SWTNFQAETTEKSAKKAFRLYKKKISTSEISSELNKNLVK-VDLSVTLEQGWYNITIMLP 118 Query 121 SKALFETVF 129 SK LFE +F Sbjct 119 SKDLFEVIF 127 Lambda K H a alpha 0.322 0.132 0.371 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9955540 Query= gi|13508310|ref|NP_110260.1| similar to hemolysin ABC-type exporter [Mycoplasma pneumoniae M129] Length=660 Score E Sequences producing significant alignments: (Bits) Value gi|12045252|ref|NP_073063.1| ABC transporter, ATP-binding protein... 918 0.0 >gi|12045252|ref|NP_073063.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=660 Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/660 (70%), Positives = 546/660 (83%), Gaps = 0/660 (0%) Query 1 MKIIYQEQPNECGICVLGMLANELHEDKYAHDELLEQINLPASGLSFFELETYGKKFGLE 60 MKIIYQEQ NECGICV+GMLAN +H++KY HDELLEQINLP +GLS FE+E+YGKKFGLE Sbjct 1 MKIIYQEQQNECGICVIGMLANAIHDEKYVHDELLEQINLPPNGLSLFEMESYGKKFGLE 60 Query 61 IASYQLTLEELKQLEGKYFIVHFPKHFVVVHKKQDNLWEVFDPAKGKYLLNDEELKKQWT 120 I SYQLT +ELK+L+ K+ IVHF HFV+V K +N WEV+DPAKGKYLL DE+L+K WT Sbjct 61 INSYQLTFQELKELDSKFIIVHFKDHFVIVKNKHENSWEVYDPAKGKYLLTDEKLEKLWT 120 Query 121 GYAATVQKSFKEIPPINKRNFFKHFFDLNLIIFYVFIELIIIGISTLLATASKTMIANTV 180 GYAATV K+FKEIPP+NK NFF +FFD NL+ FYVFIELIIIGISTLLATAS+T+I NTV Sbjct 121 GYAATVAKAFKEIPPVNKSNFFSNFFDFNLVTFYVFIELIIIGISTLLATASRTIITNTV 180 Query 181 DFGTSVNIVVFVVFFLVLKGLYLLLYALLQMVRNVLFWKQYRGYLGWIMQTLQTKSFVYF 240 DFGT+VN+VV VV+F LKGL LLL +LQ++RN LFWKQYRGYLGWI+Q+LQ KSFVYF Sbjct 181 DFGTAVNLVVLVVYFSCLKGLNLLLQVILQLIRNFLFWKQYRGYLGWIIQSLQQKSFVYF 240 Query 241 SNKSPNQLTERQFYLKEVLSFFNVHIPNLIISCTVALIIGTLIGINQMEFLWIAIVQIVV 300 SNKSPNQL ERQFYLKEVLSFFN +IPNLIISC VALIIG LIGINQ+EFL IAI QIVV Sbjct 241 SNKSPNQLIERQFYLKEVLSFFNFYIPNLIISCVVALIIGVLIGINQLEFLLIAIAQIVV 300 Query 301 NCAIFLYDFFFTKRITKQAIPQMELQNKVSLQLDGNLRDEQNGKRFNYLMMQLRKALIKN 360 N +F YDFFFTK+ITK+ IP +ELQNK+SLQLD NLR+EQN KRFN+LM+ RKAL++N Sbjct 301 NAGLFCYDFFFTKKITKKEIPYVELQNKISLQLDENLREEQNKKRFNFLMLNFRKALLQN 360 Query 361 QNISNQKEVNHLASDGVKSFAQQVFDFLILALGIIGIIEQRYTLAFLFYIFSIQALFSAY 420 QNI+NQKE+N L + +KSF QQ FDF IL LG+IGIIEQRY L+FLFY+F IQ+LFS Y Sbjct 361 QNINNQKEINRLTIENIKSFFQQGFDFAILGLGVIGIIEQRYQLSFLFYVFGIQSLFSTY 420 Query 421 ATRIIQFGAAVNLYQFCKDKLVTLFEDKVNDCNFKVSWKCPKVINLNNCSITLNQNLDLA 480 ATRI+QFGAA+N+Y +C++KLV LF + D KV+W+CP I+L N S+TLNQ++DLA Sbjct 421 ATRIVQFGAAINIYHYCREKLVNLFIETKKDEGIKVNWQCPDEISLENLSVTLNQHVDLA 480 Query 481 NLNLNLTNGMVISGENGSGKSTLLKILTGRGLSYQGQIKLDELDLKDFSASQLFHNVYYL 540 NL+L + N VI G+NGSGKST LKILTGRG Y G IK + +DLK S QLF NVYYL Sbjct 481 NLSLKIKNETVIFGQNGSGKSTFLKILTGRGFEYTGNIKFNNVDLKRCSKEQLFENVYYL 540 Query 541 TGQLTAYNDITDFGYSEALLNCKNPQVYQLLADTGIHNQIKLSSGQKQILQLFLLQNLKD 600 GQ + DFG+SEAL N +NP +YQLL D G+ NQ KLSSGQKQILQLFLL N+K+ Sbjct 541 KGQNLMQTEANDFGFSEALFNNQNPHIYQLLFDAGVQNQTKLSSGQKQILQLFLLSNIKN 600 Query 601 KVILLDETLNAIATELKPRVYQLLIKPLTYNNFVLMVEHDLRFVNSEQDLINLSPYLQQT 660 KVILLDE +NAIA E+K RVYQLL+KPLT NNFV++VEHDL F + Q+ INL+ YL+ + Sbjct 601 KVILLDECMNAIAPEIKNRVYQLLVKPLTLNNFVVLVEHDLSFASEAQNKINLTNYLRNS 660 Lambda K H a alpha 0.325 0.140 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 81260680 Query= gi|13508311|ref|NP_110261.1| similar to CYTOSOL AMINOPEPTIDASE (LEUCINE AMINOPEPTIDASE) (LAP)) [Mycoplasma pneumoniae M129] Length=445 Score E Sequences producing significant alignments: (Bits) Value gi|12045253|ref|NP_073064.1| cytosol aminopeptidase [Mycoplasma g... 707 0.0 >gi|12045253|ref|NP_073064.1| cytosol aminopeptidase [Mycoplasma genitalium G-37] Length=447 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/451 (78%), Positives = 388/451 (86%), Gaps = 10/451 (2%) Query 1 MKLNKLF--DSKTVVFKKSDKYG-KSDCCKTKCVEGQIEFGVKIPTDFPAFNRALVTFLK 57 M++NK F DS TVVF S YG K + +EFGV +PTDFPAFNRALV FLK Sbjct 1 MRINKPFSDDSNTVVFVSSKTYGVKEEAAHNP----NVEFGVVLPTDFPAFNRALVQFLK 56 Query 58 TQKNQLNVDLDSFVELYKA-ENL-CYKTALKVVVASITFCETTPFTMKTEPQKNVEVAVK 115 +K +LN++LDS +ELYK EN C+ TA+K V+ S+TFCETTPFTMKT+P+KNVEVAV+ Sbjct 57 RKKTKLNINLDSLIELYKKNENSGCFHTAIKTVITSVTFCETTPFTMKTKPEKNVEVAVQ 116 Query 116 CDSEHTSLIKEYEVVGNYVNMARQLQDTPSDQLYPEEFVKRFEKAATGLGVKITVLKQAD 175 C E+ +L+KEYE VG YVN+AR+LQDTPSD LY E FVK FEKAA+ L VKI VLKQ+D Sbjct 117 CAVEYHNLVKEYETVGEYVNLARELQDTPSDLLYSEVFVKHFEKAASKLPVKIKVLKQSD 176 Query 176 LIKKKMGLLLGVNKGSEREARLLVISYNNNKKSSETLALVGKGITYDSGGMNIKTGDYMR 235 LIKKKMGLLLGVN+GSEREARLLVISY NK S E LA VGKGITYDSGGMNIKTGDYMR Sbjct 177 LIKKKMGLLLGVNQGSEREARLLVISYQANKNSKEKLAFVGKGITYDSGGMNIKTGDYMR 236 Query 236 GMKYDMSGAAIVCSTVLALAKNKVKTNVVAVAALTENLPGPHAQRPDDIQTAYNGKTVEI 295 GMKYDMSGAAIVCSTVLALAKNKVKTNVVAVAALTENLPG AQRPDDI+ AYNGK+VEI Sbjct 237 GMKYDMSGAAIVCSTVLALAKNKVKTNVVAVAALTENLPGAKAQRPDDIKIAYNGKSVEI 296 Query 296 DNTDAEGRLVLADAISYAAKDLKATQIIDVATLTGLMSYILSTTYTGIFSTCDMAWDAFK 355 DNTDAEGRLVLADAI+YAAKDL AT IIDVATLTGLMSYILSTTYTGIFSTCD W++FK Sbjct 297 DNTDAEGRLVLADAITYAAKDLAATHIIDVATLTGLMSYILSTTYTGIFSTCDHQWESFK 356 Query 356 KAACCAGEPVWRLPMHPDYLKPLE-SKLADLQNSTSVKGAGSSRAACFLAEFREGVPLIH 414 KAAC AGEPVWRLPMHPDYLKPL+ +KLADLQNSTS +GAGSSRAACFLAEFREGV LIH Sbjct 357 KAACSAGEPVWRLPMHPDYLKPLQLTKLADLQNSTSARGAGSSRAACFLAEFREGVSLIH 416 Query 415 CDIASTASIQDLGQGVLVRTLYERAAQQAKE 445 CDIASTASI++LGQGVLVRTLYERA+Q A + Sbjct 417 CDIASTASIENLGQGVLVRTLYERASQLANK 447 Lambda K H a alpha 0.317 0.131 0.375 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 52302084 Query= gi|13508312|ref|NP_110262.1| heat shock protein GroEL [Mycoplasma pneumoniae M129] Length=543 Score E Sequences producing significant alignments: (Bits) Value gi|12045254|ref|NP_073065.1| heat shock protein (groEL) [Mycoplas... 929 0.0 >gi|12045254|ref|NP_073065.1| heat shock protein (groEL) [Mycoplasma genitalium G-37] Length=543 Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/543 (85%), Positives = 515/543 (95%), Gaps = 0/543 (0%) Query 1 MAKELVFGKNARNKLLAGINKLADAVKVTVGPKGQNVILGRKFSNPLITNDGVTIAKEIE 60 MAKEL+FGK+AR +LL GINK+A+AVKVTVGPKGQNVIL RKF+NPLITNDGVTIAKEIE Sbjct 1 MAKELIFGKDARTRLLQGINKIANAVKVTVGPKGQNVILERKFANPLITNDGVTIAKEIE 60 Query 61 LTDPLENIGAKVISVAAVSTNDIAGDGTTTATILAQEMTNRGVEAVNNGANPVNVRRGIE 120 L+DP+ENIGAKVISVAAVSTNDIAGDGTTTATILAQEMTNRG+E +N GANPVN+RRGIE Sbjct 61 LSDPVENIGAKVISVAAVSTNDIAGDGTTTATILAQEMTNRGIEIINKGANPVNIRRGIE 120 Query 121 DASQLIITELDKRSKKINTNEEIEQVAAISSGSKEIGKLIAQAMALVGKNGVITTDDAKT 180 DAS LII EL+K SKKINTNEEIEQVAAISSGSKEIGKLIAQAMALVGKNGVITTDDAKT Sbjct 121 DASLLIIKELEKYSKKINTNEEIEQVAAISSGSKEIGKLIAQAMALVGKNGVITTDDAKT 180 Query 181 INTTLETTEGIEFKGTYASPYMVSDQEKMEVVLDQPKILVSAMKINTIKEILPLLEGSME 240 INTTLETTEGIEFKGTYASPYMVSDQEKMEVVL+QPKILVS++KINTIKEILPLLEGS+E Sbjct 181 INTTLETTEGIEFKGTYASPYMVSDQEKMEVVLEQPKILVSSLKINTIKEILPLLEGSVE 240 Query 241 NGNPLLIVAPDFAEEVVTTLAVNKLRGTINVVAVKCNEYGERQKAALEDLAISTGTLAYN 300 NGNPLLIVAPDFAEEVVTTLAVNKLRGTINVVAVKCNEYGERQKAALEDLAIS+GTLAYN Sbjct 241 NGNPLLIVAPDFAEEVVTTLAVNKLRGTINVVAVKCNEYGERQKAALEDLAISSGTLAYN 300 Query 301 NELGGGFKDVTVNHLGEARRVQVAKEKTTVIGGKGSKETIQKHLDLLNGRLKQTTEKYDT 360 E+ GFKDVTV++LG+AR+VQ+AK KTTVIGGKG+K+ I+KH++LLNGRLKQTT+KYD+ Sbjct 301 TEINSGFKDVTVDNLGDARKVQIAKGKTTVIGGKGNKDKIKKHVELLNGRLKQTTDKYDS 360 Query 361 DLLKERIAHLSQGVAVVRVGGATELAQKELKLRIEDALNSTKAAVEEGIISGGGIALLNV 420 DL+KERIA+LSQGVAV+RVGGATELAQKELKLRIEDALNSTKAAVEEGII+GGG+ LLN Sbjct 361 DLIKERIAYLSQGVAVIRVGGATELAQKELKLRIEDALNSTKAAVEEGIIAGGGVGLLNA 420 Query 421 STILNDSKLADKYKAETSAENLKEILVGYEIVRKSLEAPVRQIIENSGVNPVKVFAELRS 480 S +L +SKL ++Y+ ETS EN+KEIL+G+EIV+KSLEAP RQII+NSGV+PVK+ +EL++ Sbjct 421 SCVLTNSKLKERYENETSVENIKEILLGFEIVQKSLEAPARQIIQNSGVDPVKILSELKN 480 Query 481 EADGVGFDAETKKKVDMIRSGIIDPTKVTKTALEKAASVASSLITTSVAVYDIKENKEGS 540 E GVGFDAETKKKVDMI +GIIDPTKVTKTALEKAASVASSLITT+VAVYD+KE K+ S Sbjct 481 EKTGVGFDAETKKKVDMIANGIIDPTKVTKTALEKAASVASSLITTNVAVYDVKERKDNS 540 Query 541 FQE 543 F E Sbjct 541 FSE 543 Lambda K H a alpha 0.310 0.129 0.337 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 65346372 Query= gi|13508313|ref|NP_110263.1| heat shock protein GroES [Mycoplasma pneumoniae M129] Length=116 Score E Sequences producing significant alignments: (Bits) Value gi|12045255|ref|NP_073066.1| heat shock protein (groES) [Mycoplas... 164 6e-56 >gi|12045255|ref|NP_073066.1| heat shock protein (groES) [Mycoplasma genitalium G-37] Length=110 Score = 164 bits (415), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 81/101 (80%), Positives = 92/101 (91%), Gaps = 1/101 (1%) Query 1 MKITPIHDNILVSLVESNKEEVSQKGIITALANPDKNES-AHKGTVVALGAGPAYGKSEK 59 M ITPIHDN+LVSLVESNKEEVS+KGIIT+LA+ DK+++ A+KG V+ALGAGPAYGK+EK Sbjct 1 MNITPIHDNVLVSLVESNKEEVSKKGIITSLASNDKSDANANKGIVIALGAGPAYGKTEK 60 Query 60 PKYAFGIGDTIYFKEYSGISFEEEGTKYKIISLEDVLAFEK 100 PKYAFG+GD IYFKEYSGISFE EG KYKII EDVLAFEK Sbjct 61 PKYAFGVGDIIYFKEYSGISFENEGNKYKIIGFEDVLAFEK 101 Lambda K H a alpha 0.308 0.130 0.352 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8225784 Query= gi|13508314|ref|NP_110264.1| hypothetical protein MPN575 [Mycoplasma pneumoniae M129] Length=128 ***** No hits found ***** Lambda K H a alpha 0.327 0.143 0.407 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9809135 Query= gi|13508315|ref|NP_110265.1| serine hydroxymethyltransferase [Mycoplasma pneumoniae M129] Length=406 Score E Sequences producing significant alignments: (Bits) Value gi|12045256|ref|NP_073067.1| serine hydroxymethyltransferase (gly... 683 0.0 >gi|12045256|ref|NP_073067.1| serine hydroxymethyltransferase (glyA) [Mycoplasma genitalium G-37] Length=406 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/406 (78%), Positives = 364/406 (90%), Gaps = 0/406 (0%) Query 1 MEPKIRRILNKELQRQRDCICLIASENYVSRDILEVTGSILTNKYAEGYPTRRFYEGCEV 60 M K+R +LNKELQRQR+ ICLIASENYVS+DIL VTGS+LTNKYAEGYP++RFY+GCEV Sbjct 1 MFSKVRLLLNKELQRQRENICLIASENYVSQDILAVTGSVLTNKYAEGYPSKRFYQGCEV 60 Query 61 VDESESLAINTCKELFGAKWANVQPHSGSSANYAVYLALLKPGDAILGLDLNCGGHLTHG 120 VDESE+LAI +CK LFGA+WANVQPHSGSSANYAVYLALLKPGD ILGLDLNCGGHLTHG Sbjct 61 VDESENLAIESCKTLFGAQWANVQPHSGSSANYAVYLALLKPGDTILGLDLNCGGHLTHG 120 Query 121 NKFNFSGKQYQPYSYTINPETEMLDYDEVLRVAREVKPKLIICGFSNYSRTVDFERFSAI 180 + NFSGKQYQ +Y+++ ETE LDYD +L++A E KPKLIICGFSNYSRTVDF++FSAI Sbjct 121 SPVNFSGKQYQAVTYSLDFETETLDYDAILQIALEHKPKLIICGFSNYSRTVDFKKFSAI 180 Query 181 AKEVGAYLLADIAHIAGLVAAGLHPNPLPYTDVVTSTTHKTLRGPRGGLIMSNNEAIIRK 240 AK+V AYLLADIAHIAG +AAGLH NPLP+ DVVTSTTHKTLRGPRGG+IMSNN+AII+K Sbjct 181 AKQVNAYLLADIAHIAGFIAAGLHQNPLPFVDVVTSTTHKTLRGPRGGIIMSNNQAIIKK 240 Query 241 LDSGVFPGCQGGPLQHVIAAKYVCFKEALQPKYKQYIQNVKTNAASMASWFKQQGYRVIS 300 LDSGVFPGCQGGPLQHVIAAKYVCFKEAL PK+KQY+Q VK NA +MA+WF +QGYRV+S Sbjct 241 LDSGVFPGCQGGPLQHVIAAKYVCFKEALNPKFKQYMQQVKDNALAMANWFLKQGYRVVS 300 Query 301 NGTDTHLFSLDVGKGKDVSQWLQQANIVLNMNTVPFDKNPAINPSGIRIGTPAMTTRGFK 360 GT+THLFSL VG GKDV+ WLQ+ANIVLNMNT+PF+ A +PSGIR+GTPAMTTRGFK Sbjct 301 KGTETHLFSLVVGNGKDVALWLQKANIVLNMNTIPFETKSAFSPSGIRLGTPAMTTRGFK 360 Query 361 EKHFLYVAALIDKIIKSDGNKKVIKEVKKAVLKLLERFPLYKGLEY 406 F++VA+LIDK+IKS+GN+KVI + K AVL LL+RFPLYKGL Y Sbjct 361 TNDFIFVASLIDKVIKSNGNQKVISQTKTAVLNLLKRFPLYKGLAY 406 Lambda K H a alpha 0.319 0.136 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 47121054 Query= gi|13508316|ref|NP_110266.1| hypothetical protein MPN577 [Mycoplasma pneumoniae M129] Length=346 Score E Sequences producing significant alignments: (Bits) Value gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 221 4e-70 gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 169 5e-50 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 159 3e-46 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 221 bits (563), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 203/364 (56%), Gaps = 31/364 (9%) Query 1 MQLANNKWRVFGTGWLIDWKKPKRTHNLSEPFYLYLATNLHIAVALSNPKDYAPFNKASI 60 + A+NK +GTGWLIDWK + ++PF +YLATNLH+ AL N DY P+NK S Sbjct 61 LNFASNKRNTYGTGWLIDWKGDENNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSN 120 Query 61 GNS-----LTTVFCLGKYINPQLFKLRTDVSN---AFVSIQTSTIPKTAFVARDFVPLQN 112 + +T F +GKY P +F + N AFVSIQTSTIPKTA+ A +FV Q Sbjct 121 NQAFNSEEITRFFSIGKYTYPSIFSELNFIINAREAFVSIQTSTIPKTAYAAVNFVETQG 180 Query 113 RGNQWVAPVRASEDDPALAKSYLDFAIIEVPLFLHNQMDKQIYDHFMRPAINTYERLGNS 172 + + S D+ Y DFA+IE+PLFL N D Q+++ F++PAI TY++LGNS Sbjct 181 EDESYTDSL--STDNK--RDIYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNS 236 Query 173 VGIFAYQPMASFKRDSYFALGYPQVESNIAALNLNQ-TEVKPTRPEDVA-QVTFKEPWSV 230 F + + K D+++ LGYP VES+I AL LNQ + + E Q K+ ++ Sbjct 237 S--FEKKQLDQHKNDNFYMLGYPLVESSIDALILNQRRQYNNSYTEKYTPQTLTKDQRTI 294 Query 231 DHHREIPTLTTNQLTTIKTKHFSGSKL----------SWPFDHTKSFKIKNKWLGQNYQM 280 D RE+PTL N KT++ +GS+L + K + K + ++Y+ Sbjct 295 DLSREVPTLIQN-----KTENSTGSQLLVNQSLSSTSEGIIEFIKLPEFKLNYHNKSYRQ 349 Query 281 YGHGLGIDQVNLRKGTSSSLVINQKRQIVGIYFATVITNPKKAVRNDVGLVQMLRFQGEG 340 YG G + N R G+S +L++N ++QI GIYF + ++ +++G+ Q+LR + Sbjct 350 YGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGVGQILRVPQKN 409 Query 341 NSLN 344 N+ N Sbjct 410 NTRN 413 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 169 bits (429), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 119/355 (34%), Positives = 180/355 (51%), Gaps = 46/355 (13%) Query 11 FGTGWLIDWKKPKRTHNLSEPFYLYLATNLHIAVALSNPKDYAPFNKASIGNSL-----T 65 +GTGWLIDWK + T F+ Y+ATNLH+A L N D+ P++K T Sbjct 112 YGTGWLIDWKGDENTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYEST 171 Query 66 TVFCLGKYINP-------QLFKL-RTDVSNAFVSIQTSTIPKTAFVARDFVPLQNRGNQW 117 F +GKY N Q KL + V+++ +SIQTS IPKTA+ A +F+ +G Sbjct 172 VYFSIGKYTNKTDITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFL----KGVNS 227 Query 118 VAPVRASEDDPALAKSYLDFAIIEVPLFLHNQMDKQIYDHFMRPAINTYERLGNSVGIFA 177 + PV Y DFA+IE+ L L N D QI++ F++PAINTY+ LG+S IF Sbjct 228 IKPV------------YADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFE 275 Query 178 YQPMASFKRDSYFALGYPQVESNIAALNLNQTEVKPTRPEDV---AQVTFKEPWSVDHHR 234 + + S++ LGYP +E L + + + R + +Q+ K + V + Sbjct 276 TKDLEQHWNHSHYLLGYPVLERGYDQNRLLEQKEEFARTHNFNQKSQLWSKNTYLVSTAK 335 Query 235 EIPTLTTNQL------TTIKTKHFSGSKLSWPFDHTK------SFK-IKNKWLGQNYQMY 281 EIP +T N + I +K S + H K +FK K K+ + YQ Y Sbjct 336 EIPVITKNARKDGQIGSEIFSKKTQDSHVDKVIKHEKGIVTFQNFKNFKLKYHDKEYQQY 395 Query 282 GHGLGIDQVNLRKGTSSSLVINQKRQIVGIYFATV-ITNPKKAVRNDVGLVQMLR 335 G+GL +D NL G+S S + N ++I IYF + + K ++++G+ Q+LR Sbjct 396 GYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGMSQLLR 450 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 159 bits (402), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/406 (31%), Positives = 193/406 (48%), Gaps = 69/406 (17%) Query 1 MQLANNKWRVFGTGWLIDWK--KPKRTHNLS---------------------EPFYLYLA 37 + N K + FGTGWLIDWK + K + L+ + F Y+A Sbjct 65 LNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKEKQDDKLFIAYIA 124 Query 38 TNLHIAVALSNPKDYAPFNKASIGNSL-----TTVFCLGKYINPQL--------FKLRTD 84 TNLH+ L N DY P+NK G S T F LG++ NP++ ++++T Sbjct 125 TNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKINSKPEEMNYQVQTR 184 Query 85 V-SNAFVSIQTSTIPKTAF-----VARDFVPLQNRGNQWVAPVRASEDDPALA--KSYLD 136 + +A V IQTST+PKTA+ + D+ + W +++ + P KSY D Sbjct 185 LKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFWTKK-QSTANFPRTRTLKSYAD 243 Query 137 FAIIEVPLFLHNQMDKQIYDHFMRPAINTYERLGNSVGIFAYQPMASFKRDSYFALGYPQ 196 FA++EVPLFL N D +IY ++RPA+ Y+ LG+ IFA P A + ++Y+ LGYP Sbjct 244 FAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAEYINNTYYLLGYPV 303 Query 197 VESNIAALNLNQTEV-KPTRPEDVAQVTFKEPWS-----VDHHREIPTLTTNQLTTIKTK 250 +N L Q E K ++ V + K+P V+ +PTLT N+ K Sbjct 304 TNNNKYQFILGQDEKWKFSQQTSVLKHYQKQPLQQRTVYVERDDGLPTLTFNE---DKLT 360 Query 251 HFSGSKLSWPFDHTKSFKIKNKWLGQ-------------NYQMYGHGLGIDQVNLRKGTS 297 H G+ L D + N + Y+++G+G ++ N G+S Sbjct 361 HVQGTDL-INVDQITDTNLGNGLINYAGLSRFTLSYHNVEYKLFGYGTILNNTNFPGGSS 419 Query 298 SSLVINQKRQIVGIYFATVITNPKKAVRN-DVGLVQMLRFQGEGNS 342 S V N+++Q+ IYF ++I RN ++GL Q+LR NS Sbjct 420 GSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRTYNTNNS 465 Lambda K H a alpha 0.319 0.134 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 38930375 Query= gi|13508317|ref|NP_110267.1| hypothetical protein MPN578 [Mycoplasma pneumoniae M129] Length=100 ***** No hits found ***** Lambda K H a alpha 0.325 0.133 0.469 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6209994 Query= gi|13508318|ref|NP_110268.1| hypothetical protein MPN579 [Mycoplasma pneumoniae M129] Length=109 ***** No hits found ***** Lambda K H a alpha 0.328 0.143 0.433 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 7368650 Query= gi|13508319|ref|NP_110269.1| hypothetical protein MPN580 [Mycoplasma pneumoniae M129] Length=140 Score E Sequences producing significant alignments: (Bits) Value gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 96.7 4e-26 gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 93.2 5e-25 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 69.3 2e-16 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 96.7 bits (239), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 78/131 (60%), Gaps = 8/131 (6%) Query 11 KFNQQTYEQYGKGLALNDLYIRRGASGSLVFNQDQQISGIFFAVAS---HSDPKPGEKTL 67 K++ + Y+QYG GL L+D + G+SGS +FN +Q+I+ I+F V +S + Sbjct 386 KYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGM 445 Query 68 VQLLRLPVDEST-----TATVKDNCVPYDLIFGNRNTTHYYTQFAKQHHTHLYEQIQQSN 122 QLLR ES T +D YDLIFG+ NT +Y QFAK+H+THLY+QI+ S Sbjct 446 SQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHLYDQIKSSE 505 Query 123 DQLIKFIDRKN 133 + K++D+ N Sbjct 506 KEEFKYVDKNN 516 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 93.2 bits (230), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 5/132 (4%) Query 12 FNQQTYEQYGKGLALNDLYIRRGASGSLVFNQDQQISGIFFAVASHSDPKP--GEKTLVQ 69 ++ ++Y QYG+G AL + R G+SG+L+ N +QI+GI+F V + + Q Sbjct 342 YHNKSYRQYGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGVGQ 401 Query 70 LLRLPVDEST-TATVKDNCVPYDLIFGNRNTTHYYTQFAKQHHTHLYEQIQQSNDQLIKF 128 +LR+P +T ++ N YDLIFG+ NTT++Y +FA+Q++THLY+ I S D +K+ Sbjct 402 ILRVPQKNNTRNRSIATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDTKLKY 461 Query 129 ID--RKNVSCSM 138 ++ K V S+ Sbjct 462 VNTVEKTVKASI 473 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 69.3 bits (168), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 65/119 (55%), Gaps = 6/119 (5%) Query 17 YEQYGKGLALNDLYIRRGASGSLVFNQDQQISGIFFAV---ASHSDPKPGEKTLVQLLRL 73 Y+ +G G LN+ G+SGS VFN+++Q++ I+F + + + L Q+LR Sbjct 400 YKLFGYGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRT 459 Query 74 PVDESTTATVKDNCVPYDLIFGNRNTTHYYTQFAKQHHTHLYEQIQQSNDQLIKFIDRK 132 +T + YDLIFG++NT +Y QFAK+ THL+ +IQ S + I F K Sbjct 460 ---YNTNNSKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSSISFYKDK 515 Lambda K H a alpha 0.318 0.133 0.384 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11381838 Query= gi|13508320|ref|NP_110270.1| hypothetical protein MPN581 [Mycoplasma pneumoniae M129] Length=265 Score E Sequences producing significant alignments: (Bits) Value gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 209 1e-66 gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 162 1e-48 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 158 5e-47 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 209 bits (532), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 111/243 (46%), Positives = 154/243 (63%), Gaps = 15/243 (6%) Query 8 RAEYQTKWATNTVPKPTDFYHQLYNLSFSLTLTSQRWNTYGTGWLIDWKDTSTNENK--- 64 R ++T++ N++P +D YH Y+L+FSL S + NTYGTGWLIDWK N K Sbjct 32 RRGFRTQFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGDENNPEKNDP 91 Query 65 FTAYLATNFHVADTLKNPHDYPPY-----NQVDNTQDLTTSFRIGKYTDPSLFG---LYT 116 F YLATN HV D L+N +DY PY NQ N++++T F IGKYT PS+F Sbjct 92 FKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPSIFSELNFII 151 Query 117 NVKHAFVDVQLAALPKMAYAAVDFVDYRFDNKHWKSLNEICPEVGLKPYADFAVLEVPLY 176 N + AFV +Q + +PK AYAAV+FV+ + +++ + + + + YADFAV+E+PL+ Sbjct 152 NAREAFVSIQTSTIPKTAYAAVNFVETQGEDESY--TDSLSTDNKRDIYADFAVIEIPLF 209 Query 177 LNNKLDYQVWENFIKPAIATYKALGDSTNLFASTSSSDLQNDTYFALGYPLLESNIDAIH 236 L N DYQV+ FIKPAI TYK LG+S+ F +ND ++ LGYPL+ES+IDA+ Sbjct 210 LTNHRDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQHKNDNFYMLGYPLVESSIDALI 267 Query 237 FNQ 239 NQ Sbjct 268 LNQ 270 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 162 bits (411), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 99/250 (40%), Positives = 144/250 (58%), Gaps = 32/250 (13%) Query 2 QLEKVPRAEYQTKWATNT--VPKPTDFYHQLYNLSFSLTLTSQRWNTYGTGWLIDWK--- 56 Q KV + Y + NT +P+ +D Y + Y+L+F+L TS ++YGTGWLIDWK Sbjct 65 QQPKVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKGDE 124 Query 57 DTSTNENKFTAYLATNFHVADTLKNPHDYPPYNQVDNTQDL-----TTSFRIGKYTDPS- 110 +T+ + F AY+ATN HVAD L+N D+ PY++ D+ ++ T F IGKYT+ + Sbjct 125 NTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTD 184 Query 111 LFGLYTN-------VKHAFVDVQLAALPKMAYAAVDFVDYRFDNKHWKSLNEICPEVGLK 163 + LY V + + +Q + +PK AY A +F+ K +N I P Sbjct 185 ITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFL---------KGVNSIKP----- 230 Query 164 PYADFAVLEVPLYLNNKLDYQVWENFIKPAIATYKALGDSTNLFASTSSSDLQNDTYFAL 223 YADFAV+E+ L L N D+Q++ FIKPAI TYK+LGDSTN+F + N +++ L Sbjct 231 VYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLL 290 Query 224 GYPLLESNID 233 GYP+LE D Sbjct 291 GYPVLERGYD 300 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 158 bits (400), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 144/265 (54%), Gaps = 49/265 (18%) Query 15 WATNTVPKPTDFYHQLYNLSFSLTLTSQRWNTYGTGWLIDWKDTST-------------- 60 + NTVPK +FY + Y+L+F+L T+Q+ +GTGWLIDWK T Sbjct 44 YVNNTVPK-NNFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSII 102 Query 61 ------------NENKFTAYLATNFHVADTLKNPHDYPPYNQVDNTQDL-----TTSFRI 103 ++ F AY+ATN H+ D LKN HDY PYN+ N T SF + Sbjct 103 SSVSNHSLKEKQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLL 162 Query 104 GKYTDPSL--------FGLYTNVKH-AFVDVQLAALPKMAYAAVDFVDYRF-----DNKH 149 G++ +P + + + T +K A V +Q + LPK AYA +D +++ + ++ Sbjct 163 GRFANPKINSKPEEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGF 222 Query 150 W---KSLNEICPEVGLKPYADFAVLEVPLYLNNKLDYQVWENFIKPAIATYKALGDSTNL 206 W +S LK YADFAVLEVPL+L+N D ++++ +I+PA+ YK LGD N+ Sbjct 223 WTKKQSTANFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENI 282 Query 207 FASTSSSDLQNDTYFALGYPLLESN 231 FA T ++ N+TY+ LGYP+ +N Sbjct 283 FAKTPYAEYINNTYYLLGYPVTNNN 307 Lambda K H a alpha 0.317 0.132 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27936468 Query= gi|13508321|ref|NP_110271.1| hypothetical protein MPN582 [Mycoplasma pneumoniae M129] Length=439 Score E Sequences producing significant alignments: (Bits) Value gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 219 2e-68 gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 193 8e-58 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 178 3e-52 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 219 bits (559), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 160/454 (35%), Positives = 231/454 (51%), Gaps = 70/454 (15%) Query 22 ACSAFRKPDKFEGYY----INNIPGSAEIDHANYDLTFFLGFFNRIEKTEKDKSQIDFGS 77 CS F +P G+ IN+IP ++ H NYDLTF L F + T Sbjct 23 GCS-FVRPQFRRGFRTQFKINSIPTVSDPYHINYDLTFSLNFASNKRNT----------- 70 Query 78 IHGTGWLIDWKEVDKKDKKANKFTVYLATNLHVIQALKNREDHPPYNQFDINFVRTVD-- 135 +GTGWLIDWK + +K + F VYLATNLHVI AL+N D+ PYN+ N + Sbjct 71 -YGTGWLIDWKGDENNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEI 129 Query 136 ---FRIGKYTDVKQFVAPSKLG-LPNSTQAFVAAQPTVLPKTAFIAHDFVNYTLSKDQKN 191 F IGKYT F S+L + N+ +AFV+ Q + +PKTA+ A +FV Sbjct 130 TRFFSIGKYTYPSIF---SELNFIINAREAFVSIQTSTIPKTAYAAVNFV---------- 176 Query 192 KKQREQQWKVQIKPNKDEVHPYADSAVLELPLFLNNSSDRQIFDHFIQPAIRAYKQLGDS 251 + Q E + ++ YAD AV+E+PLFL N D Q+F+ FI+PAI YKQLG+S Sbjct 177 ETQGEDESYTDSLSTDNKRDIYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNS 236 Query 252 LNIFAYPTLDQFKHSHYYVLGYPYIAKKLPTLFVNQTGK------EKTVPGETAQIPNDQ 305 F LDQ K+ ++Y+LGYP + + L +NQ + EK P + DQ Sbjct 237 S--FEKKQLDQHKNDNFYMLGYPLVESSIDALILNQRRQYNNSYTEKYTP---QTLTKDQ 291 Query 306 PFVSTINEEGPHLGRIKSDKFNGGTWAWNHDNTKN---------FP-FNRQFRGKEYQMY 355 + ++ E P L + K++ G N + P F + K Y+ Y Sbjct 292 RTID-LSREVPTLIQNKTENSTGSQLLVNQSLSSTSEGIIEFIKLPEFKLNYHNKSYRQY 350 Query 356 GKGIGITNGSLSRGASGSLVLNNKRQIVAIY-----FASRITETQEWGLAQLLRWKPRSV 410 G+G + N + G+SG+L+LNN++QI IY F ++ G+ Q+LR ++ Sbjct 351 GRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGVGQILRVPQKN- 409 Query 411 LNEEKDSVA-----YDLIFGNSNTKKYYAQFAKK 439 N S+A YDLIFG+SNT +YA+FA++ Sbjct 410 -NTRNRSIATNKSNYDLIFGDSNTTNFYAKFARQ 442 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 193 bits (490), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 167/526 (32%), Positives = 237/526 (45%), Gaps = 126/526 (24%) Query 1 MWVALKRFGFLSGLLAL-TVLSACSA----------------------FRKPDKFEGYYI 37 MW LK GF L++L +L++CSA F+ +G + Sbjct 6 MWFKLKSLGF--SLISLQALLASCSAVSPVPVPIEEKNDSTTDNNATPFKDEQSDQGTEV 63 Query 38 NN-------------------IPGSAEIDHANYDLTFFLGFFNRIEKTEKDKSQIDFGSI 78 N IP ++I YDLTF L F + + Sbjct 64 NQQPKVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDS------------ 111 Query 79 HGTGWLIDWKEVDKKDKKANKFTVYLATNLHVIQALKNREDHPPYNQFDI-----NFVRT 133 +GTGWLIDWK + +K F Y+ATNLHV L+N DH PY++ D + T Sbjct 112 YGTGWLIDWKGDENTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYEST 171 Query 134 VDFRIGKYT---DVKQFVAPSKLGLPNSTQAFVAAQPTVLPKTAFIAHDFVNYTLSKDQK 190 V F IGKYT D+ + KL + ++ Q + +PKTA+ A +F+ S Sbjct 172 VYFSIGKYTNKTDITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFLKGVNS---- 227 Query 191 NKKQREQQWKVQIKPNKDEVHPYADSAVLELPLFLNNSSDRQIFDHFIQPAIRAYKQLGD 250 IKP YAD AV+EL L L N D QIF+ FI+PAI YK LGD Sbjct 228 ------------IKP------VYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGD 269 Query 251 SLNIFAYPTLDQ-FKHSHYYVLGYPYIAKKLPTLFVNQTGKEKTVP---GETAQIPNDQP 306 S NIF L+Q + HSH Y+LGYP + + + + +E + +Q+ + Sbjct 270 STNIFETKDLEQHWNHSH-YLLGYPVLERGYDQNRLLEQKEEFARTHNFNQKSQLWSKNT 328 Query 307 FVSTINEEGPHL-------GRIKSDKFNGGTWAWNHD-------------NTKNFPFNRQ 346 ++ + +E P + G+I S+ F+ T + D N KNF + Sbjct 329 YLVSTAKEIPVITKNARKDGQIGSEIFSKKTQDSHVDKVIKHEKGIVTFQNFKNFKL--K 386 Query 347 FRGKEYQMYGKGIGITNGSLSRGASGSLVLNNKRQIVAIYFA------SRITETQEWGLA 400 + KEYQ YG G+ + + +L G+SGS + NN ++I +IYF + T G++ Sbjct 387 YHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGMS 446 Query 401 QLLRWKPRS-------VLNEEKDSVAYDLIFGNSNTKKYYAQFAKK 439 QLLR R N YDLIFG+SNTK +YAQFAKK Sbjct 447 QLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKK 492 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 178 bits (451), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 155/499 (31%), Positives = 227/499 (45%), Gaps = 88/499 (18%) Query 10 FLSGLLALTVLSACS--------AFRKPDKFEGYYINNIPGSAEIDHANYDLTFFLGFFN 61 F+ G + +LS+CS + R Y+NN YDLTF L F N Sbjct 13 FMPGCI---LLSSCSFRSYIPTPSLRNTVGNHNSYVNNTVPKNNFYEKFYDLTFALNFTN 69 Query 62 RIEKTEKDKSQIDFGSIHGTGWLIDWKEVDKKD----------------------KKANK 99 +KT++ GTGWLIDWK + KD K+ +K Sbjct 70 --QKTQE----------FGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKEKQDDK 117 Query 100 -FTVYLATNLHVIQALKNREDHPPYNQFDINFV------RTVDFRIGKYTDVKQFVAPSK 152 F Y+ATNLH+I LKN D+ PYN+ D N + +T F +G++ + K P + Sbjct 118 LFIAYIATNLHLIDGLKNDHDYQPYNK-DGNGLSFPFDQKTQSFLLGRFANPKINSKPEE 176 Query 153 LGLPNSTQ----AFVAAQPTVLPKTAFIAHDFVNYTLSKDQKNKKQREQQWKVQIKPNKD 208 + T+ A V Q + LPKTA+ D +N+ + ++ P Sbjct 177 MNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFWTKKQSTANFPRTR 236 Query 209 EVHPYADSAVLELPLFLNNSSDRQIFDHFIQPAIRAYKQLGDSLNIFAYPTLDQFKHSHY 268 + YAD AVLE+PLFL+N++D +I+ +I+PA++AYK+LGD NIFA ++ ++ Y Sbjct 237 TLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAEYINNTY 296 Query 269 YVLGYPYIAKKLPTLFVNQTGK-----EKTVPGETAQIPNDQPFVSTINEEGPHLGRIKS 323 Y+LGYP + Q K + +V + P Q V ++G Sbjct 297 YLLGYPVTNNNKYQFILGQDEKWKFSQQTSVLKHYQKQPLQQRTVYVERDDGLPTLTFNE 356 Query 324 DKFN--GGTWAWNHDNTKNF-------------PFNRQFRGKEYQMYGKGIGITNGSLSR 368 DK GT N D + F + EY+++G G + N + Sbjct 357 DKLTHVQGTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNVEYKLFGYGTILNNTNFPG 416 Query 369 GASGSLVLNNKRQIVAIYFASRITETQ------EWGLAQLLRWKPRSVLNEEKDSV--AY 420 G+SGS V N ++Q+ +IYF S I T GL Q+LR N K S +Y Sbjct 417 GSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILR---TYNTNNSKHSAPSSY 473 Query 421 DLIFGNSNTKKYYAQFAKK 439 DLIFG+ NT K+YAQFAK+ Sbjct 474 DLIFGDKNTIKFYAQFAKE 492 Lambda K H a alpha 0.319 0.136 0.413 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 51458502 Query= gi|13508322|ref|NP_110272.1| hypothetical protein MPN583 [Mycoplasma pneumoniae M129] Length=225 Score E Sequences producing significant alignments: (Bits) Value gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 93.6 6e-24 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 77.0 4e-18 gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 71.6 3e-16 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 93.6 bits (231), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 72/214 (34%), Positives = 109/214 (51%), Gaps = 46/214 (21%) Query 3 NNAQAFVNVQTTVIPKTAFTAHDFVNYTLPKDKKKQNDTENKKKQPKDGENDKQKEQAET 62 N +AFV++QT+ IPKTA+ A +FV GE++ + T Sbjct 152 NAREAFVSIQTSTIPKTAYAAVNFV--------------------ETQGEDESYTDSLST 191 Query 63 QPFEWIQQKDADDKKESNTANTSDSLAYADFAVLELTLFLDNPVDKKVFDHFIQPAIKTY 122 D+K++ YADFAV+E+ LFL N D +VF+ FI+PAI+TY Sbjct 192 -----------DNKRD----------IYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETY 230 Query 123 EQLGNSLKLFAKPTLTELKNHRYYLSGYPFLENKVNVLSVNQIKKDTSTETTINGQTVQQ 182 +QLGNS F K L + KN +Y+ GYP +E+ ++ L +NQ ++ ++ T T Q Sbjct 231 KQLGNS--SFEKKQLDQHKNDNFYMLGYPLVESSIDALILNQRRQYNNSYT--EKYTPQT 286 Query 183 SNHEQPLIVRSTIAKPTLIRNQGDDFNGSNWVWN 216 +Q I S PTLI+N+ ++ GS + N Sbjct 287 LTKDQRTIDLSR-EVPTLIQNKTENSTGSQLLVN 319 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 77.0 bits (188), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 93/199 (47%), Gaps = 32/199 (16%) Query 7 AFVNVQTTVIPKTAFTAHDFVNYTLPKDKKKQNDTENKKKQPKDGENDKQKEQAETQPFE 66 A V +QT+ +PKTA+ D +N+ E ++ F Sbjct 189 AMVFIQTSTLPKTAYAGIDPINF-------------------------DYHETSDESGF- 222 Query 67 WIQQKDADDKKESNTANTSDSLAYADFAVLELTLFLDNPVDKKVFDHFIQPAIKTYEQLG 126 W +++ +N T +YADFAVLE+ LFLDN D K++ +I+PA++ Y++LG Sbjct 223 WTKKQST-----ANFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELG 277 Query 127 NSLKLFAKPTLTELKNHRYYLSGYPFLENKVNVLSVNQIKK-DTSTETTINGQTVQQSNH 185 + +FAK E N+ YYL GYP N + Q +K S +T++ +Q Sbjct 278 DVENIFAKTPYAEYINNTYYLLGYPVTNNNKYQFILGQDEKWKFSQQTSVLKHYQKQPLQ 337 Query 186 EQPLIVRSTIAKPTLIRNQ 204 ++ + V PTL N+ Sbjct 338 QRTVYVERDDGLPTLTFNE 356 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 71.6 bits (174), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 34/66 (52%), Positives = 45/66 (68%), Gaps = 0/66 (0%) Query 89 AYADFAVLELTLFLDNPVDKKVFDHFIQPAIKTYEQLGNSLKLFAKPTLTELKNHRYYLS 148 YADFAV+EL L L+N D ++F+ FI+PAI TY+ LG+S +F L + NH +YL Sbjct 231 VYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLL 290 Query 149 GYPFLE 154 GYP LE Sbjct 291 GYPVLE 296 Lambda K H a alpha 0.312 0.128 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22673158 Query= gi|13508323|ref|NP_110273.1| hypothetical protein MPN584 [Mycoplasma pneumoniae M129] Length=135 Score E Sequences producing significant alignments: (Bits) Value gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 93.2 7e-25 gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 90.5 5e-24 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 84.7 6e-22 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 93.2 bits (230), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 53/137 (39%), Positives = 80/137 (58%), Gaps = 15/137 (11%) Query 7 QKFKVY-LEFSGKKYRIYGQSIGISHLDLGGGSSGSLLLNDKKQIAGIYFGV-------D 58 Q FK + L++ K+Y+ YG + + +L GGSSGS + N+ ++I IYFGV Sbjct 378 QNFKNFKLKYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSK 437 Query 59 GANNELGLAQLLRWKPETYHNDEARSVA-------YDLIFGNKNTTKYYAQFVKEHKTHL 111 + +G++QLLR ++ R+ YDLIFG+ NT +YAQF K+H THL Sbjct 438 THKDNIGMSQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHL 497 Query 112 YEQIKQINNDEFRFVEK 128 Y+QIK +EF++V+K Sbjct 498 YDQIKSSEKEEFKYVDK 514 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 90.5 bits (223), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 49/130 (38%), Positives = 78/130 (60%), Gaps = 13/130 (10%) Query 13 LEFSGKKYRIYGQSIGISHLDLGGGSSGSLLLNDKKQIAGIYFGV------DGANNELGL 66 L + K YR YG+ + + + GSSG+L+LN++KQIAGIYFGV + +G+ Sbjct 340 LNYHNKSYRQYGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGV 399 Query 67 AQLLRWKPETYHNDEARSVA-----YDLIFGNKNTTKYYAQFVKEHKTHLYEQIKQINND 121 Q+LR + +N RS+A YDLIFG+ NTT +YA+F +++ THLY+ I + Sbjct 400 GQILRVPQK--NNTRNRSIATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDT 457 Query 122 EFRFVEKTKR 131 + ++V ++ Sbjct 458 KLKYVNTVEK 467 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 84.7 bits (208), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 51/128 (40%), Positives = 75/128 (59%), Gaps = 14/128 (11%) Query 13 LEFSGKKYRIYGQSIGISHLDLGGGSSGSLLLNDKKQIAGIYFG----VDGANNE---LG 65 L + +Y+++G +++ + GGSSGS + N +KQ+ IYFG V NN LG Sbjct 393 LSYHNVEYKLFGYGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLG 452 Query 66 LAQLLRWKPETYHNDEARSVA---YDLIFGNKNTTKYYAQFVKEHKTHLYEQIKQINNDE 122 L Q+LR TY+ + ++ A YDLIFG+KNT K+YAQF KE +THL+ +I+ N Sbjct 453 LGQILR----TYNTNNSKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSS 508 Query 123 FRFVEKTK 130 F + K Sbjct 509 ISFYKDKK 516 Lambda K H a alpha 0.317 0.137 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10652233 Query= gi|13508324|ref|NP_110274.1| hypothetical protein MPN585 [Mycoplasma pneumoniae M129] Length=302 Score E Sequences producing significant alignments: (Bits) Value gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 183 3e-56 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 140 7e-40 gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 139 4e-39 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 183 bits (465), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/269 (42%), Positives = 158/269 (59%), Gaps = 31/269 (12%) Query 31 EFYINNIPSSTEIHRFNYDLNFSLTFTNRITSNGEAKFSVTYGTGWLIDWKEPDKKKE-N 89 +F IN+IP+ ++ + NYDL FSL F + + TYGTGWLIDWK + E N Sbjct 38 QFKINSIPTVSDPYHINYDLTFSLNFASNKRN--------TYGTGWLIDWKGDENNPEKN 89 Query 90 DPFRAYLATNLHVAASLINPQDYEPYKNKDDAGW-------TTTFRLGKYTKVSDFVSPN 142 DPF+ YLATNLHV +L N DYEPY NKD T F +GKYT S F N Sbjct 90 DPFKVYLATNLHVIDALRNNNDYEPY-NKDSNNQAFNSEEITRFFSIGKYTYPSIFSELN 148 Query 143 QFGLPNAAQALVNVQTSVIPKTAFAARDFVDYSFPQEQKDKEKRKQQWVKNSHTKNSDVQ 202 + NA +A V++QTS IPKTA+AA +FV+ + + + +S + ++ Sbjct 149 --FIINAREAFVSIQTSTIPKTAYAAVNFVE----------TQGEDESYTDSLSTDNKRD 196 Query 203 PFAEFAILEIPLFSKSKVDRKIFNHFIQPAIRTYKQLGDSLNIFANPTLDQLKQNRYYVL 262 +A+FA++EIPLF + D ++FN FI+PAI TYKQLG+S F LDQ K + +Y+L Sbjct 197 IYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQHKNDNFYML 254 Query 263 GYPFLKNKVSSLFLNQTGKKKGIFRRKYT 291 GYP +++ + +L LNQ + + KYT Sbjct 255 GYPLVESSIDALILNQRRQYNNSYTEKYT 283 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 140 bits (353), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 109/335 (33%), Positives = 158/335 (47%), Gaps = 67/335 (20%) Query 1 MLVVFKRLGFIVSIFSLTFLSACAAFDKW------------QEFYINN-IPSSTEIHRFN 47 ML F + G + + LS+C+ F + Y+NN +P + +F Sbjct 1 MLYRFWKTGLAIFMPGCILLSSCS-FRSYIPTPSLRNTVGNHNSYVNNTVPKNNFYEKF- 58 Query 48 YDLNFSLTFTNRITSNGEAKFSVTYGTGWLIDWKEPD----------------------- 84 YDL F+L FTN+ T +GTGWLIDWK + Sbjct 59 YDLTFALNFTNQKTQE--------FGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSL 110 Query 85 KKKENDP-FRAYLATNLHVAASLINPQDYEPYKNKDDAGW-------TTTFRLGKYTKVS 136 K+K++D F AY+ATNLH+ L N DY+PY NKD G T +F LG++ Sbjct 111 KEKQDDKLFIAYIATNLHLIDGLKNDHDYQPY-NKDGNGLSFPFDQKTQSFLLGRFANPK 169 Query 137 DFVSPNQFGLPNAAQ----ALVNVQTSVIPKTAFAARDFVDYSFPQEQKDKEKRKQQWVK 192 P + + A+V +QTS +PKTA+A D +++ + E D+ W K Sbjct 170 INSKPEEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDY-HETSDESGF---WTK 225 Query 193 NSHTKN----SDVQPFAEFAILEIPLFSKSKVDRKIFNHFIQPAIRTYKQLGDSLNIFAN 248 T N ++ +A+FA+LE+PLF + D KI+ +I+PA++ YK+LGD NIFA Sbjct 226 KQSTANFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAK 285 Query 249 PTLDQLKQNRYYVLGYPFLKNKVSSLFLNQTGKKK 283 + N YY+LGYP N L Q K K Sbjct 286 TPYAEYINNTYYLLGYPVTNNNKYQFILGQDEKWK 320 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 139 bits (349), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/243 (38%), Positives = 128/243 (53%), Gaps = 42/243 (17%) Query 37 IPSSTEIHRFNYDLNFSLTFTNRITSNGEAKFS-VTYGTGWLIDWK-EPDKKKENDPFRA 94 IP ++I+R YDL F+L FT+ FS +YGTGWLIDWK + + ++ F A Sbjct 85 IPEESDIYRKGYDLTFTLNFTS---------FSNDSYGTGWLIDWKGDENTTQKQGSFFA 135 Query 95 YLATNLHVAASLINPQDYEPYKNKDDA------GWTTTFRLGKYTKVSDFV---SPNQFG 145 Y+ATNLHVA L N D+ PY DD T F +GKYT +D + Sbjct 136 YIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTDITKLYQEEKLE 195 Query 146 LPNAAQALVNVQTSVIPKTAFAARDFVDYSFPQEQKDKEKRKQQWVKNSHTKNSDVQPFA 205 +L+++QTS IPKTA+ A +F+ NS +A Sbjct 196 QRKVNDSLLSIQTSNIPKTAYTATNFL----------------------KGVNSIKPVYA 233 Query 206 EFAILEIPLFSKSKVDRKIFNHFIQPAIRTYKQLGDSLNIFANPTLDQLKQNRYYVLGYP 265 +FA++E+ L ++ D +IFN FI+PAI TYK LGDS NIF L+Q + +Y+LGYP Sbjct 234 DFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLLGYP 293 Query 266 FLK 268 L+ Sbjct 294 VLE 296 Lambda K H a alpha 0.320 0.135 0.409 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32955368 Query= gi|13508325|ref|NP_110275.1| hypothetical protein MPN586 [Mycoplasma pneumoniae M129] Length=347 Score E Sequences producing significant alignments: (Bits) Value gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 202 1e-62 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 174 5e-52 gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 170 3e-50 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 202 bits (513), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 131/324 (40%), Positives = 182/324 (56%), Gaps = 36/324 (11%) Query 42 NGAQAFVSAQTSTIPKTAFTAHDFVDYTLPQEQKGKEQKEQQWMKNSQTKDTDVHPYADF 101 N +AFVS QTSTIPKTA+ A +FV+ Q E + +S + D YADF Sbjct 152 NAREAFVSIQTSTIPKTAYAAVNFVE----------TQGEDESYTDSLSTDNKRDIYADF 201 Query 102 AVLEILLFPDSSTDRKIFNHFIQPAIRAYKQLGDSLNIFANQTLDQPKHNRYYLLGYPFL 161 AV+EI LF + D ++FN FI+PAI YKQLG+S F + LDQ K++ +Y+LGYP + Sbjct 202 AVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQHKNDNFYMLGYPLV 259 Query 162 RNKAASLFLNQTEQ-RKEHMDK-TTQILHEKPFVVLTDPAKPTLIRNKGANFTGNTWTSN 219 + +L LNQ Q + +K T Q L + + PTLI+NK N TG+ N Sbjct 260 ESSIDALILNQRRQYNNSYTEKYTPQTLTKDQRTIDLSREVPTLIQNKTENSTGSQLLVN 319 Query 220 YDLSKKSGLYHKFL----------GKKYQIYGKSIVISDLNLSSGSSGSLLLNDRKQIVG 269 LS S +F+ K Y+ YG+ + + N GSSG+L+LN++KQI G Sbjct 320 QSLSSTSEGIIEFIKLPEFKLNYHNKSYRQYGRGFALQNTNFRPGSSGTLMLNNQKQIAG 379 Query 270 IYFGV-DGPKD-----ELGFSQLLRWQAKNNDEEKDSVA-----YDLIFGNKNTTKYYAQ 318 IYFGV D +D +G Q+LR KNN + S+A YDLIFG+ NTT +YA+ Sbjct 380 IYFGVLDFGEDVSLMSNIGVGQILRVPQKNNTRNR-SIATNKSNYDLIFGDSNTTNFYAK 438 Query 319 FAKEHKTHLYEQIDRSNDQQFTFV 342 FA+++ THLY+ I S D + +V Sbjct 439 FARQNNTHLYQMISNSKDTKLKYV 462 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 174 bits (442), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 123/349 (35%), Positives = 179/349 (51%), Gaps = 43/349 (12%) Query 32 LCHQTKIGLPNGAQAFVSAQTSTIPKTAFTAHDFV--DYTLPQEQKGKEQKEQQWMKNSQ 89 + +Q + L A F+ QTST+PKTA+ D + DY ++ G K+Q + Sbjct 177 MNYQVQTRLKQDAMVFI--QTSTLPKTAYAGIDPINFDYHETSDESGFWTKKQSTANFPR 234 Query 90 TKDTDVHPYADFAVLEILLFPDSSTDRKIFNHFIQPAIRAYKQLGDSLNIFANQTLDQPK 149 T+ + YADFAVLE+ LF D++ D KI+ +I+PA++AYK+LGD NIFA + Sbjct 235 TRT--LKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAEYI 292 Query 150 HNRYYLLGYPFLRNKAASLFLNQTEQRK--------EHMDKTTQILHEKPFVVLTDPAKP 201 +N YYLLGYP N L Q E+ K +H K Q L ++ V D P Sbjct 293 NNTYYLLGYPVTNNNKYQFILGQDEKWKFSQQTSVLKHYQK--QPLQQRTVYVERDDGLP 350 Query 202 TLIRNK-------GANFT----------GNTWTSNYDLSKKSGLYHKFLGKKYQIYGKSI 244 TL N+ G + GN + LS+ + YH +Y+++G Sbjct 351 TLTFNEDKLTHVQGTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNV---EYKLFGYGT 407 Query 245 VISDLNLSSGSSGSLLLNDRKQIVGIYFGV-------DGPKDELGFSQLLRWQAKNNDEE 297 ++++ N GSSGS + N KQ+ IYFG + LG Q+LR NN + Sbjct 408 ILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRTYNTNNSKH 467 Query 298 KDSVAYDLIFGNKNTTKYYAQFAKEHKTHLYEQIDRSNDQQFTFVKNQK 346 +YDLIFG+KNT K+YAQFAKE +THL+ +I S + +F K++K Sbjct 468 SAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSSISFYKDKK 516 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 170 bits (430), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/341 (36%), Positives = 178/341 (52%), Gaps = 62/341 (18%) Query 46 AFVSAQTSTIPKTAFTAHDFVDYTLPQEQKGKEQKEQQWMKNSQTKDTDVHP-YADFAVL 104 + +S QTS IPKTA+TA +F+ KG + P YADFAV+ Sbjct 202 SLLSIQTSNIPKTAYTATNFL--------KGV---------------NSIKPVYADFAVI 238 Query 105 EILLFPDSSTDRKIFNHFIQPAIRAYKQLGDSLNIFANQTLDQPKHNRYYLLGYPFL-RN 163 E+ L ++ D +IFN FI+PAI YK LGDS NIF + L+Q ++ +YLLGYP L R Sbjct 239 ELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLLGYPVLERG 298 Query 164 KAASLFLNQTEQ--RKEHMDKTTQILHEKPFVVLTDPAKPTLIRNKGAN-------FTGN 214 + L Q E+ R + ++ +Q+ + ++V T P + +N + F+ Sbjct 299 YDQNRLLEQKEEFARTHNFNQKSQLWSKNTYLVSTAKEIPVITKNARKDGQIGSEIFSKK 358 Query 215 TWTSNYD--LSKKSGLYH---------KFLGKKYQIYGKSIVISDLNLSSGSSGSLLLND 263 T S+ D + + G+ K+ K+YQ YG +++ D NL GSSGS + N+ Sbjct 359 TQDSHVDKVIKHEKGIVTFQNFKNFKLKYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNN 418 Query 264 RKQIVGIYFGV-------DGPKDELGFSQLLRWQAKNNDEEKDSVA--------YDLIFG 308 ++I IYFGV KD +G SQLLR + +++ K YDLIFG Sbjct 419 NQKINSIYFGVLEVYKNSKTHKDNIGMSQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFG 478 Query 309 NKNTTKYYAQFAKEHKTHLYEQIDRSNDQQFTFV--KNQKC 347 + NT +YAQFAK+H THLY+QI S ++F +V NQK Sbjct 479 DSNTKSFYAQFAKKHNTHLYDQIKSSEKEEFKYVDKNNQKT 519 Lambda K H a alpha 0.318 0.133 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39071940 Query= gi|13508326|ref|NP_110276.1| hypothetical protein MPN587 [Mycoplasma pneumoniae M129] Length=150 Score E Sequences producing significant alignments: (Bits) Value gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 80.5 3e-20 gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 74.7 3e-18 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 59.7 6e-13 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 80.5 bits (197), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 71/127 (56%), Gaps = 22/127 (17%) Query 22 ACATISLSDKSG---EFYINNIPSSAELHRINYDLTFSLGFTNRIQTKKKNEVNFVAFYG 78 C+ + + G +F IN+IP+ ++ + INYDLTFSL F + K+N YG Sbjct 23 GCSFVRPQFRRGFRTQFKINSIPTVSDPYHINYDLTFSLNFA----SNKRNT------YG 72 Query 79 TGLLIDWK--EGN--QYQPFRVYLATNVHVAAGLKNEADYLPYSQPDAELGWTVD----- 129 TG LIDWK E N + PF+VYLATN+HV L+N DY PY++ + + Sbjct 73 TGWLIDWKGDENNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRF 132 Query 130 FRLGKYT 136 F +GKYT Sbjct 133 FSIGKYT 139 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 74.7 bits (182), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 48/110 (44%), Positives = 61/110 (55%), Gaps = 19/110 (17%) Query 40 IPSSAELHRINYDLTFSLGFTNRIQTKKKNEVNFVAFYGTGLLIDWK-EGNQYQP---FR 95 IP ++++R YDLTF+L FT+ YGTG LIDWK + N Q F Sbjct 85 IPEESDIYRKGYDLTFTLNFTSFSNDS----------YGTGWLIDWKGDENTTQKQGSFF 134 Query 96 VYLATNVHVAAGLKNEADYLPYSQPDA-----ELGWTVDFRLGKYTNVKD 140 Y+ATN+HVA GL+N D+ PYS+ D E TV F +GKYTN D Sbjct 135 AYIATNLHVADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTD 184 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 59.7 bits (143), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/177 (30%), Positives = 72/177 (41%), Gaps = 49/177 (28%) Query 2 VIALKRFSFLASIATLTVLNACATISLSDKSGEFYINNIPSSAELHRINYDLTFSLGFTN 61 I L SF + I T ++ N + Y+NN + YDLTF+L FTN Sbjct 17 CILLSSCSFRSYIPTPSLRNTVG-------NHNSYVNNTVPKNNFYEKFYDLTFALNFTN 69 Query 62 RIQTKKKNEVNFVAFYGTGLLIDWK---------------------------EGNQYQPF 94 + K E +GTG LIDWK E + F Sbjct 70 Q----KTQE------FGTGWLIDWKGDETKDLNTLTIASSSIISSVSNHSLKEKQDDKLF 119 Query 95 RVYLATNVHVAAGLKNEADYLPYSQPDAELGWTVD-----FRLGKYTNVKDFVSPNE 146 Y+ATN+H+ GLKN+ DY PY++ L + D F LG++ N K P E Sbjct 120 IAYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKINSKPEE 176 Lambda K H a alpha 0.320 0.135 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12653019 Query= gi|13508327|ref|NP_110277.1| hypothetical protein MPN588 [Mycoplasma pneumoniae M129] Length=531 Score E Sequences producing significant alignments: (Bits) Value gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 421 2e-144 gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 335 1e-111 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 285 7e-92 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 421 bits (1081), Expect = 2e-144, Method: Compositional matrix adjust. Identities = 235/541 (43%), Positives = 332/541 (61%), Gaps = 53/541 (10%) Query 1 MRLQFKLLGFLTLLGTSTILSACAATQPNFEPNNIEESGPITP---TTPTTDVP------ 51 M + K LGF +L+ +L++C+A P P IEE T TP D Sbjct 6 MWFKLKSLGF-SLISLQALLASCSAVSP--VPVPIEEKNDSTTDNNATPFKDEQSDQGTE 62 Query 52 ---KPTAEVVPVNRGFHFQTNKVPSESDVFKHNYDLTFSLNFTNKSNDIYGTGWLFDWKG 108 +P E NR F F T+ +P ESD+++ YDLTF+LNFT+ SND YGTGWL DWKG Sbjct 63 VNQQPKVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKG 122 Query 109 DEKALGIDGSFVPSITSNIDNSLLKDDQFTVYLATNLHVADALRNDQDYEPYKKDQNKQD 168 DE GSF Y+ATNLHVAD LRN D+ PY K ++++ Sbjct 123 DENTTQKQGSFF------------------AYIATNLHVADGLRNIGDHWPYSKTDDQRE 164 Query 169 FTENTKTEFFSLGKYLEGEQLKQYISKEENQSANQTDKALVSIQASNIPKTAYTATDFVD 228 F E T +FS+GKY + + + +EE + + +L+SIQ SNIPKTAYTAT+F+ Sbjct 165 FNEYESTVYFSIGKYTNKTDITK-LYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFLK 223 Query 229 MNSYSYNNITTSLPGNYADFAVIEVNLNLKNQRDQQILHDFVKPAIKAYKALGDTLELFS 288 S+ YADFAVIE+ LNL+N RD QI ++F+KPAI YK+LGD+ +F Sbjct 224 G--------VNSIKPVYADFAVIELELNLENLRDWQIFNEFIKPAINTYKSLGDSTNIFE 275 Query 289 AKPLNQFIEQNYYLLGYPVINKGNNTANLLLAQQKSFDHNNSDHNQKSQWFTKDQSYINK 348 K L Q ++YLLGYPV+ +G + N LL Q++ F + + NQKSQ ++K+ ++ Sbjct 276 TKDLEQHWNHSHYLLGYPVLERGYD-QNRLLEQKEEFARTH-NFNQKSQLWSKNTYLVST 333 Query 349 LDRIPVLTNNYRAYNESTGSQLFANQQNESWLNGVVIQDKGVVNFASFSNFTLKYHEKRF 408 IPV+T N R + GS++F+ + +S ++ V+ +KG+V F +F NF LKYH+K + Sbjct 334 AKEIPVITKNARK-DGQIGSEIFSKKTQDSHVDKVIKHEKGIVTFQNFKNFKLKYHDKEY 392 Query 409 QQYGYGLMLNDTNFPGGSSGSPLIGKDNKLNSIYFGVLEIYQSGSLARNDIGMSQILRTP 468 QQYGYGLML+DTN PGGSSGS + + K+NSIYFGVLE+Y++ +++IGMSQ+LRT Sbjct 393 QQYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGMSQLLRTS 452 Query 469 QNDKGSSISKGS--------YDLIFGDKNTKNYYAKFAKDHQTHLYQKIKESKDEQFRFV 520 + + + ++ + YDLIFGD NTK++YA+FAK H THLY +IK S+ E+F++V Sbjct 453 KRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHLYDQIKSSEKEEFKYV 512 Query 521 E 521 + Sbjct 513 D 513 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 335 bits (858), Expect = 1e-111, Method: Compositional matrix adjust. Identities = 210/475 (44%), Positives = 271/475 (57%), Gaps = 49/475 (10%) Query 62 RGFH--FQTNKVPSESDVFKHNYDLTFSLNFTNKSNDIYGTGWLFDWKGDEKALGIDGSF 119 RGF F+ N +P+ SD + NYDLTFSLNF + + YGTGWL DWKGDE Sbjct 33 RGFRTQFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGDE--------- 83 Query 120 VPSITSNIDNSLLKDDQFTVYLATNLHVADALRNDQDYEPYKKDQNKQDFTENTKTEFFS 179 N+ K+D F VYLATNLHV DALRN+ DYEPY KD N Q F T FFS Sbjct 84 ---------NNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFS 134 Query 180 LGKYLEGEQLKQYISKEENQSANQTDKALVSIQASNIPKTAYTATDFVDM----NSYSYN 235 +GKY I E N N + A VSIQ S IPKTAY A +FV+ SY+ + Sbjct 135 IGKYTYPS-----IFSELNFIINARE-AFVSIQTSTIPKTAYAAVNFVETQGEDESYTDS 188 Query 236 NITTSLPGNYADFAVIEVNLNLKNQRDQQILHDFVKPAIKAYKALGDTLELFSAKPLNQF 295 T + YADFAVIE+ L L N RD Q+ ++F+KPAI+ YK LG++ F K L+Q Sbjct 189 LSTDNKRDIYADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNS--SFEKKQLDQH 246 Query 296 IEQNYYLLGYPVINKGNNTANLLLAQQKSFDHNNSDHNQKSQWFTKDQSYINKLDRIPVL 355 N+Y+LGYP++ + L+L Q++ ++ N+ Q TKDQ I+ +P L Sbjct 247 KNDNFYMLGYPLVESSIDA--LILNQRRQYN-NSYTEKYTPQTLTKDQRTIDLSREVPTL 303 Query 356 TNNYRAYNESTGSQLFANQQNESWLNGVVIQDKGVVNFASFSNFTLKYHEKRFQQYGYGL 415 N STGSQL NQ S +G++ F F L YH K ++QYG G Sbjct 304 IQN--KTENSTGSQLLVNQSLSS-------TSEGIIEFIKLPEFKLNYHNKSYRQYGRGF 354 Query 416 MLNDTNFPGGSSGSPLIGKDNKLNSIYFGVLEIYQSGSLARNDIGMSQILRTPQ--NDKG 473 L +TNF GSSG+ ++ ++ IYFGVL+ + SL N IG+ QILR PQ N + Sbjct 355 ALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSN-IGVGQILRVPQKNNTRN 413 Query 474 SSIS--KGSYDLIFGDKNTKNYYAKFAKDHQTHLYQKIKESKDEQFRFVETQETT 526 SI+ K +YDLIFGD NT N+YAKFA+ + THLYQ I SKD + ++V T E T Sbjct 414 RSIATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDTKLKYVNTVEKT 468 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 285 bits (729), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 189/500 (38%), Positives = 272/500 (54%), Gaps = 47/500 (9%) Query 50 VPKPTAEVVPVNRGFHFQTNKVPSESDVFKHNYDLTFSLNFTNKSNDIYGTGWLFDWKGD 109 +P P+ N + N VP +++ ++ YDLTF+LNFTN+ +GTGWL DWKGD Sbjct 29 IPTPSLRNTVGNHN-SYVNNTVP-KNNFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGD 86 Query 110 E-KALGIDGSFVPSITSNIDNSLLKDDQ----FTVYLATNLHVADALRNDQDYEPYKKDQ 164 E K L SI S++ N LK+ Q F Y+ATNLH+ D L+ND DY+PY KD Sbjct 87 ETKDLNTLTIASSSIISSVSNHSLKEKQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDG 146 Query 165 NKQDFTENTKTEFFSLGKYL------EGEQLKQYISKEENQSANQTDKALVSIQASNIPK 218 N F + KT+ F LG++ + E++ + Q A +V IQ S +PK Sbjct 147 NGLSFPFDQKTQSFLLGRFANPKINSKPEEMNYQVQTRLKQDA------MVFIQTSTLPK 200 Query 219 TAYTATDFVDMNS---------YSYNNITTSLP-----GNYADFAVIEVNLNLKNQRDQQ 264 TAY D ++ + ++ T + P +YADFAV+EV L L N D + Sbjct 201 TAYAGIDPINFDYHETSDESGFWTKKQSTANFPRTRTLKSYADFAVLEVPLFLDNANDAK 260 Query 265 ILHDFVKPAIKAYKALGDTLELFSAKPLNQFIEQNYYLLGYPVINKGNNTANLLLAQQKS 324 I ++++PA++AYK LGD +F+ P ++I YYLLGYPV N NN +L Q + Sbjct 261 IYQEWIRPAVQAYKELGDVENIFAKTPYAEYINNTYYLLGYPVTN--NNKYQFILGQDEK 318 Query 325 FDHNNS----DHNQKSQWFTKDQSYINKLDRIPVLTNNYRAYNESTGSQLF-ANQQNESW 379 + + H QK Q + Y+ + D +P LT N G+ L +Q ++ Sbjct 319 WKFSQQTSVLKHYQK-QPLQQRTVYVERDDGLPTLTFNEDKLTHVQGTDLINVDQITDTN 377 Query 380 LNGVVIQDKGVVNFASFSNFTLKYHEKRFQQYGYGLMLNDTNFPGGSSGSPLIGKDNKLN 439 L G++N+A S FTL YH ++ +GYG +LN+TNFPGGSSGS + K+ +L Sbjct 378 LGN------GLINYAGLSRFTLSYHNVEYKLFGYGTILNNTNFPGGSSGSAVFNKEKQLT 431 Query 440 SIYFGVLEIYQSGSLARNDIGMSQILRTPQNDKGSSISKGSYDLIFGDKNTKNYYAKFAK 499 SIYFG L +G+ ++G+ QILRT + + SYDLIFGDKNT +YA+FAK Sbjct 432 SIYFGSLINVTTGNNRNVNLGLGQILRTYNTNNSKHSAPSSYDLIFGDKNTIKFYAQFAK 491 Query 500 DHQTHLYQKIKESKDEQFRF 519 + QTHL+ KI+ S + F Sbjct 492 EKQTHLWNKIQTSVNSSISF 511 Lambda K H a alpha 0.313 0.131 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 63670824 Query= gi|13508328|ref|NP_110278.1| hypothetical protein MPN589 [Mycoplasma pneumoniae M129] Length=157 Score E Sequences producing significant alignments: (Bits) Value gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 76.6 8e-19 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 59.7 6e-13 gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 58.5 2e-12 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 76.6 bits (187), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 45/120 (38%), Positives = 66/120 (55%), Gaps = 15/120 (13%) Query 32 MPTLTKNLRQ----GQPVAGSKVHTDYSNGFLNEYSLNQGIVDFGTFKSAITDYHGYEYK 87 +P +TKN R+ G + K + + + +GIV F FK+ YH EY+ Sbjct 337 IPVITKNARKDGQIGSEIFSKKTQDSHVDKVIKH---EKGIVTFQNFKNFKLKYHDKEYQ 393 Query 88 NHGYGLALTDTDLLGGSSGSLVFNQDKKISSIY--------SAATESDSVGYAQLLPVPK 139 +GYGL L DT+L GGSSGS +FN ++KI+SIY ++ T D++G +QLL K Sbjct 394 QYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTHKDNIGMSQLLRTSK 453 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 59.7 bits (143), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/133 (32%), Positives = 66/133 (50%), Gaps = 13/133 (10%) Query 32 MPTLTKNLRQGQPVAGSK-VHTDYSNGFLNEYSLNQGIVDFGTFKSAITDYHGYEYKNHG 90 +PTLT N + V G+ ++ D + + +L G++++ YH EYK G Sbjct 349 LPTLTFNEDKLTHVQGTDLINVDQ----ITDTNLGNGLINYAGLSRFTLSYHNVEYKLFG 404 Query 91 YGLALTDTDLLGGSSGSLVFNQDKKISSIY--------SAATESDSVGYAQLLPVPKDVN 142 YG L +T+ GGSSGS VFN++K+++SIY + + ++G Q+L N Sbjct 405 YGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRTYNTNN 464 Query 143 GVSLVKYSYDLIL 155 SYDLI Sbjct 465 SKHSAPSSYDLIF 477 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 58.5 bits (140), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 18/140 (13%) Query 27 DFYGSMPTLTKNLRQGQPVAGSKVHTDYSNGFLNEYSLNQGIVDFGTFKSAITDYHGYEY 86 D +PTL +N + + GS++ + S S ++GI++F +YH Y Sbjct 295 DLSREVPTLIQN--KTENSTGSQLLVNQSLS-----STSEGIIEFIKLPEFKLNYHNKSY 347 Query 87 KNHGYGLALTDTDLLGGSSGSLVFNQDKKISSIYSAATE-------SDSVGYAQLLPVPK 139 + +G G AL +T+ GSSG+L+ N K+I+ IY + ++G Q+L VP+ Sbjct 348 RQYGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGVGQILRVPQ 407 Query 140 DVN----GVSLVKYSYDLIL 155 N ++ K +YDLI Sbjct 408 KNNTRNRSIATNKSNYDLIF 427 Lambda K H a alpha 0.315 0.134 0.413 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13480629 Query= gi|13508329|ref|NP_110279.1| hypothetical protein MPN590 [Mycoplasma pneumoniae M129] Length=217 Score E Sequences producing significant alignments: (Bits) Value gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 128 3e-36 gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 100 1e-26 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 82.8 3e-20 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 128 bits (321), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/239 (36%), Positives = 127/239 (53%), Gaps = 39/239 (16%) Query 11 LRYRLKGFVFLTLLLVQGVFTACAPA----VPVNNKSVSAV----------QPEDKQALK 56 + ++LK F +L+ +Q + +C+ VP+ K+ S Q + + Sbjct 6 MWFKLKSLGF-SLISLQALLASCSAVSPVPVPIEEKNDSTTDNNATPFKDEQSDQGTEVN 64 Query 57 PDPALGE--YTSDLKFNTNFIPKKDDPFRPFYDLSFTLQFQDPYTATYGTGWLIDWK-DN 113 P + + Y + KFNT+FIP++ D +R YDL+FTL F +YGTGWLIDWK D Sbjct 65 QQPKVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTFTLNFTSFSNDSYGTGWLIDWKGDE 124 Query 114 NQPNK---FTAYIATNLHVADNLRNVNDY---------EFFNQFDYFDDPTESFTLGKFV 161 N K F AYIATNLHVAD LRN+ D+ FN++ + T F++GK+ Sbjct 125 NTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTDDQREFNEY----ESTVYFSIGKYT 180 Query 162 DGNEIKQIVPDAMHEP-----SLVRIETSKLPKTAYTTTLFINDLGEYRLPAADFAVLE 215 + +I ++ + E SL+ I+TS +PKTAYT T F+ + + ADFAV+E Sbjct 181 NKTDITKLYQEEKLEQRKVNDSLLSIQTSNIPKTAYTATNFLKGVNSIKPVYADFAVIE 239 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 100 bits (250), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/168 (40%), Positives = 87/168 (52%), Gaps = 21/168 (13%) Query 69 KFNTNFIPKKDDPFRPFYDLSFTLQFQDPYTATYGTGWLIDWK-DNNQPNK---FTAYIA 124 +F N IP DP+ YDL+F+L F TYGTGWLIDWK D N P K F Y+A Sbjct 38 QFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGDENNPEKNDPFKVYLA 97 Query 125 TNLHVADNLRNVNDYEFF-----NQFDYFDDPTESFTLGKFVDGNEIKQIVPDAMHEPSL 179 TNLHV D LRN NDYE + NQ ++ T F++GK+ + ++ + Sbjct 98 TNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPSIFSELNFIINAREAF 157 Query 180 VRIETSKLPKTAYTTTLFINDLGE------------YRLPAADFAVLE 215 V I+TS +PKTAY F+ GE R ADFAV+E Sbjct 158 VSIQTSTIPKTAYAAVNFVETQGEDESYTDSLSTDNKRDIYADFAVIE 205 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 82.8 bits (203), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/174 (34%), Positives = 84/174 (48%), Gaps = 38/174 (22%) Query 57 PDPALGEYTSDLKFNTNFIPKKDDPFRPFYDLSFTLQFQDPYTATYGTGWLIDWKDN--- 113 P P+L + N K++ + FYDL+F L F + T +GTGWLIDWK + Sbjct 30 PTPSLRNTVGNHNSYVNNTVPKNNFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGDETK 89 Query 114 -----------------------NQPNK-FTAYIATNLHVADNLRNVNDYEFFNQFDY-- 147 Q +K F AYIATNLH+ D L+N +DY+ +N+ Sbjct 90 DLNTLTIASSSIISSVSNHSLKEKQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDGNGL 149 Query 148 ---FDDPTESFTLGKFVDGN------EIKQIVPDAMHEPSLVRIETSKLPKTAY 192 FD T+SF LG+F + E+ V + + ++V I+TS LPKTAY Sbjct 150 SFPFDQKTQSFLLGRFANPKINSKPEEMNYQVQTRLKQDAMVFIQTSTLPKTAY 203 Lambda K H a alpha 0.320 0.138 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 21525150 Query= gi|13508330|ref|NP_110280.1| hypothetical protein MPN591 [Mycoplasma pneumoniae M129] Length=353 Score E Sequences producing significant alignments: (Bits) Value gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 227 8e-72 gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 185 2e-56 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 182 5e-55 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 227 bits (579), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 151/391 (39%), Positives = 217/391 (55%), Gaps = 65/391 (17%) Query 1 MANSLRNVNDYDPFKYR--PSYFDLEAPTESFALGKFVDAIEVKQMALDAFSES-----S 53 +A+ LRN+ D+ P+ F+ T F++GK+ + ++ ++ + E S Sbjct 143 VADGLRNIGDHWPYSKTDDQREFNEYESTVYFSIGKYTNKTDITKLYQEEKLEQRKVNDS 202 Query 54 MVSIATSQLPKTAYTATSFIESEYYSFPYLFNDQKYYWDYFDYKIPAADFAVLELELDLN 113 ++SI TS +PKTAYTAT+F++ P ADFAV+ELEL+L Sbjct 203 LLSIQTSNIPKTAYTATNFLKGVNSIKPVY-----------------ADFAVIELELNLE 245 Query 114 NQQDQQIKDHFIDPAIKAYKQLGDSTGLFATKPLTEYQNDTHYLLGYPVVPT--DHTQLW 171 N +D QI + FI PAI YK LGDST +F TK L ++ N +HYLLGYPV+ D +L Sbjct 246 NLRDWQIFNEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLLGYPVLERGYDQNRLL 305 Query 172 ECK----------QGAERFSYGYFYSNMAR----LTKNLRQGDPNAGS-----KTHIEYS 212 E K Q ++ +S + + A+ +TKN R+ D GS KT + Sbjct 306 EQKEEFARTHNFNQKSQLWSKNTYLVSTAKEIPVITKNARK-DGQIGSEIFSKKTQDSHV 364 Query 213 NELLDKDSMDQGIVRFSTFLGANINYHDYDYRQQGYGLTLTDTNLPGGSSGSLVFNQDKK 272 ++++ ++GIV F F + YHD +Y+Q GYGL L DTNLPGGSSGS +FN ++K Sbjct 365 DKVI---KHEKGIVTFQNFKNFKLKYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQK 421 Query 273 ISSIY--------SAATESDSVGYAQLLRTPR---DVNGISVVS-----QSYDLIFGDSN 316 I+SIY ++ T D++G +QLLRT + + N + Q YDLIFGDSN Sbjct 422 INSIYFGVLEVYKNSKTHKDNIGMSQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSN 481 Query 317 TKRYYAMFAKKQQTHLYSEILKSTDEQYRYV 347 TK +YA FAKK THLY +I S E+++YV Sbjct 482 TKSFYAQFAKKHNTHLYDQIKSSEKEEFKYV 512 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 185 bits (470), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/372 (36%), Positives = 195/372 (52%), Gaps = 36/372 (10%) Query 1 MANSLRNVNDYDPFKYRPS--YFDLEAPTESFALGKFVDAIEVKQMALDAFSESSMVSIA 58 + ++LRN NDY+P+ + F+ E T F++GK+ ++ + + VSI Sbjct 102 VIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPSIFSELNFIINAREAFVSIQ 161 Query 59 TSQLPKTAYTATSFIESEYYSFPY---LFNDQKYYWDYFDYKIPAADFAVLELELDLNNQ 115 TS +PKTAY A +F+E++ Y L D K D + ADFAV+E+ L L N Sbjct 162 TSTIPKTAYAAVNFVETQGEDESYTDSLSTDNK--RDIY------ADFAVIEIPLFLTNH 213 Query 116 QDQQIKDHFIDPAIKAYKQLGDSTGLFATKPLTEYQNDTHYLLGYPVVPTDHTQLWECKQ 175 +D Q+ + FI PAI+ YKQLG+S+ F K L +++ND Y+LGYP+V + L ++ Sbjct 214 RDYQVFNEFIKPAIETYKQLGNSS--FEKKQLDQHKNDNFYMLGYPLVESSIDALILNQR 271 Query 176 GAERFSYGYFYSNMARLTKNLRQGDPNAGSKTHIEYSNE------LLDKDSMD---QGIV 226 SY Y+ LTK+ R D + T I+ E LL S+ +GI+ Sbjct 272 RQYNNSYTEKYTPQT-LTKDQRTIDLSREVPTLIQNKTENSTGSQLLVNQSLSSTSEGII 330 Query 227 RFSTFLGANINYHDYDYRQQGYGLTLTDTNLPGGSSGSLVFNQDKKISSIYSAATE---- 282 F +NYH+ YRQ G G L +TN GSSG+L+ N K+I+ IY + Sbjct 331 EFIKLPEFKLNYHNKSYRQYGRGFALQNTNFRPGSSGTLMLNNQKQIAGIYFGVLDFGED 390 Query 283 ---SDSVGYAQLLRTPRDVN----GISVVSQSYDLIFGDSNTKRYYAMFAKKQQTHLYSE 335 ++G Q+LR P+ N I+ +YDLIFGDSNT +YA FA++ THLY Sbjct 391 VSLMSNIGVGQILRVPQKNNTRNRSIATNKSNYDLIFGDSNTTNFYAKFARQNNTHLYQM 450 Query 336 ILKSTDEQYRYV 347 I S D + +YV Sbjct 451 ISNSKDTKLKYV 462 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 182 bits (463), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 128/394 (32%), Positives = 200/394 (51%), Gaps = 49/394 (12%) Query 1 MANSLRNVNDYDPFKYRPS--YFDLEAPTESFALGKFVDAI------EVKQMALDAFSES 52 + + L+N +DY P+ + F + T+SF LG+F + E+ + Sbjct 129 LIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRFANPKINSKPEEMNYQVQTRLKQD 188 Query 53 SMVSIATSQLPKTAYTATSFIESEYYSFPYLFNDQKYYW--DYFDYKIPA-------ADF 103 +MV I TS LPKTAY I +Y+ +D+ +W P ADF Sbjct 189 AMVFIQTSTLPKTAYAGIDPINFDYHET----SDESGFWTKKQSTANFPRTRTLKSYADF 244 Query 104 AVLELELDLNNQQDQQIKDHFIDPAIKAYKQLGDSTGLFATKPLTEYQNDTHYLLGYPVV 163 AVLE+ L L+N D +I +I PA++AYK+LGD +FA P EY N+T+YLLGYPV Sbjct 245 AVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIFAKTPYAEYINNTYYLLGYPVT 304 Query 164 PTDHTQL-------WECKQGAERFSYGYFYSNMARLTKNLRQGDP------NAGSKTHIE 210 + Q W+ Q + Y + + T + + D N TH++ Sbjct 305 NNNKYQFILGQDEKWKFSQQTSVLKH-YQKQPLQQRTVYVERDDGLPTLTFNEDKLTHVQ 363 Query 211 YSNELLDKD-----SMDQGIVRFSTFLGANINYHDYDYRQQGYGLTLTDTNLPGGSSGSL 265 +L++ D ++ G++ ++ ++YH+ +Y+ GYG L +TN PGGSSGS Sbjct 364 -GTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNVEYKLFGYGTILNNTNFPGGSSGSA 422 Query 266 VFNQDKKISSIY--------SAATESDSVGYAQLLRTPRDVNGISVVSQSYDLIFGDSNT 317 VFN++K+++SIY + + ++G Q+LRT N SYDLIFGD NT Sbjct 423 VFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILRTYNTNNSKHSAPSSYDLIFGDKNT 482 Query 318 KRYYAMFAKKQQTHLYSEILKSTDEQYRYVVDKQ 351 ++YA FAK++QTHL+++I S + + DK+ Sbjct 483 IKFYAQFAKEKQTHLWNKIQTSVNSSISFYKDKK 516 Lambda K H a alpha 0.316 0.133 0.386 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39921330 Query= gi|13508331|ref|NP_110281.1| hypothetical protein MPN592 [Mycoplasma pneumoniae M129] Length=521 Score E Sequences producing significant alignments: (Bits) Value gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma gen... 370 1e-124 gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma ge... 275 1e-88 gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma ge... 246 7e-77 >gi|12045257|ref|NP_073068.1| putative lipoprotein [Mycoplasma genitalium G-37] Length=524 Score = 370 bits (949), Expect = 1e-124, Method: Compositional matrix adjust. Identities = 235/565 (42%), Positives = 322/565 (57%), Gaps = 95/565 (17%) Query 1 MGFKLKGFGFLTLFASQAFLTACSATLTVANTNHKNESDKFVIFEPQPPLSQTIPKPEAE 60 M FKLK GF +L + QA L +CSA P P +P E Sbjct 6 MWFKLKSLGF-SLISLQALLASCSAV------------------SPVP-----VPIEEKN 41 Query 61 PVIEPDAVATP-----PVQNAEVQIKPDSSKGVYSPGFKFNTNFIPKVNTKYRPGYDLSF 115 D ATP Q EV +P + VY+ FKFNT+FIP+ + YR GYDL+F Sbjct 42 DST-TDNNATPFKDEQSDQGTEVNQQPKVEQKVYNRNFKFNTSFIPEESDIYRKGYDLTF 100 Query 116 ALKFGTSWKEAYGTGWLIDWKD----VKQDNKFTAYLATNLHVADSLRNKDDYKPYNKDG 171 L F + ++YGTGWLIDWK ++ F AY+ATNLHVAD LRN D+ PY+K Sbjct 101 TLNFTSFSNDSYGTGWLIDWKGDENTTQKQGSFFAYIATNLHVADGLRNIGDHWPYSKTD 160 Query 172 NQKEFLPGDITTEFSLGKYIDAQTVQKLTPEYQNLKHLNNRNSDALVSIQTSKLPKTAYT 231 +Q+EF + T FS+GKY + + KL YQ K + +D+L+SIQTS +PKTAYT Sbjct 161 DQREFNEYESTVYFSIGKYTNKTDITKL---YQEEKLEQRKVNDSLLSIQTSNIPKTAYT 217 Query 232 ATDFIKTAQYKYNHIVSNTVYELDLFQNAVSYADFAVLELELNLANNRDQQIFDSFINPA 291 AT+F+K N++ + YADFAV+ELELNL N RD QIF+ FI PA Sbjct 218 ATNFLKGV---------NSIKPV--------YADFAVIELELNLENLRDWQIFNEFIKPA 260 Query 292 VTAYEKLGNSLGLFSNLQLDQYVDDTHYLLGYPLLKR--------------EKTSYWNLP 337 + Y+ LG+S +F L+Q+ + +HYLLGYP+L+R +T +N Sbjct 261 INTYKSLGDSTNIFETKDLEQHWNHSHYLLGYPVLERGYDQNRLLEQKEEFARTHNFNQK 320 Query 338 QKGYSSPLYENSN-KEVSRITRNIRKDDEIPGSRLV--QNQINYLPFAQNDPKGVMDFSK 394 + +S Y S KE+ IT+N RKD +I GS + + Q +++ KG++ F Sbjct 321 SQLWSKNTYLVSTAKEIPVITKNARKDGQI-GSEIFSKKTQDSHVDKVIKHEKGIVTFQN 379 Query 395 YLNYVFNYHEKQYQHHGYGLLLEDTDFPGGSSGSPLFNQNKQINSIYFAALP----SKSY 450 + N+ YH+K+YQ +GYGL+L+DT+ PGGSSGS +FN N++INSIYF L SK++ Sbjct 380 FKNFKLKYHDKEYQQYGYGLMLDDTNLPGGSSGSAIFNNNQKINSIYFGVLEVYKNSKTH 439 Query 451 ----GVSQIL------------RATQNKDKSKNYDLIFGDSNTKKYYAQFAKEHKTHLYH 494 G+SQ+L R T N+DK ++YDLIFGDSNTK +YAQFAK+H THLY Sbjct 440 KDNIGMSQLLRTSKRESEKNKTRTTNNRDKFQHYDLIFGDSNTKSFYAQFAKKHNTHLYD 499 Query 495 QILQSNDEQFRFVENDQTVTSQTPF 519 QI S E+F++V+ + +TPF Sbjct 500 QIKSSEKEEFKYVDKN---NQKTPF 521 >gi|12044920|ref|NP_072730.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=474 Score = 275 bits (703), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 176/460 (38%), Positives = 261/460 (57%), Gaps = 56/460 (12%) Query 80 IKPDSSKGVYSPGFKFNTNFIPKVNTKYRPGYDLSFALKFGTSWKEAYGTGWLIDWK--- 136 ++P +G + +F N IP V+ Y YDL+F+L F ++ + YGTGWLIDWK Sbjct 27 VRPQFRRGFRT---QFKINSIPTVSDPYHINYDLTFSLNFASNKRNTYGTGWLIDWKGDE 83 Query 137 -DVKQDNKFTAYLATNLHVADSLRNKDDYKPYNKDGNQKEFLPGDITTEFSLGKYIDAQT 195 + ++++ F YLATNLHV D+LRN +DY+PYNKD N + F +IT FS+GKY Sbjct 84 NNPEKNDPFKVYLATNLHVIDALRNNNDYEPYNKDSNNQAFNSEEITRFFSIGKYTYPSI 143 Query 196 VQKLTPEYQNLKHLNNRNSDALVSIQTSKLPKTAYTATDFIKTAQYKYNHIVS-NTVYEL 254 +L +N R +A VSIQTS +PKTAY A +F++T ++ S +T + Sbjct 144 FSELNF------IINAR--EAFVSIQTSTIPKTAYAAVNFVETQGEDESYTDSLSTDNKR 195 Query 255 DLFQNAVSYADFAVLELELNLANNRDQQIFDSFINPAVTAYEKLGNSLGLFSNLQLDQYV 314 D+ YADFAV+E+ L L N+RD Q+F+ FI PA+ Y++LGNS F QLDQ+ Sbjct 196 DI------YADFAVIEIPLFLTNHRDYQVFNEFIKPAIETYKQLGNS--SFEKKQLDQHK 247 Query 315 DDTHYLLGYPLLKREKTSYWNLPQKGYSSPLYEN-SNKEVSRITRNIRKDDEIP------ 367 +D Y+LGYPL++ + ++ Y++ E + + +++ R I E+P Sbjct 248 NDNFYMLGYPLVESSIDALILNQRRQYNNSYTEKYTPQTLTKDQRTIDLSREVPTLIQNK 307 Query 368 -----GSRLVQNQINYLPFAQNDPKGVMDFSKYLNYVFNYHEKQYQHHGYGLLLEDTDFP 422 GS+L+ NQ + +G+++F K + NYH K Y+ +G G L++T+F Sbjct 308 TENSTGSQLLVNQS-----LSSTSEGIIEFIKLPEFKLNYHNKSYRQYGRGFALQNTNFR 362 Query 423 GGSSGSPLFNQNKQINSIYFAALP-------SKSYGVSQILRATQ---NKDKS-----KN 467 GSSG+ + N KQI IYF L + GV QILR Q +++S N Sbjct 363 PGSSGTLMLNNQKQIAGIYFGVLDFGEDVSLMSNIGVGQILRVPQKNNTRNRSIATNKSN 422 Query 468 YDLIFGDSNTKKYYAQFAKEHKTHLYHQILQSNDEQFRFV 507 YDLIFGDSNT +YA+FA+++ THLY I S D + ++V Sbjct 423 YDLIFGDSNTTNFYAKFARQNNTHLYQMISNSKDTKLKYV 462 >gi|12044919|ref|NP_072729.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=516 Score = 246 bits (627), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 169/471 (36%), Positives = 245/471 (52%), Gaps = 68/471 (14%) Query 98 NFIPKVNTKYRPGYDLSFALKFGTSWKEAYGTGWLIDWKD-------------------- 137 N +PK N Y YDL+FAL F + +GTGWLIDWK Sbjct 47 NTVPK-NNFYEKFYDLTFALNFTNQKTQEFGTGWLIDWKGDETKDLNTLTIASSSIISSV 105 Query 138 ------VKQDNK-FTAYLATNLHVADSLRNKDDYKPYNKDGNQKEFLPGDITTEFSLGKY 190 KQD+K F AY+ATNLH+ D L+N DY+PYNKDGN F T F LG++ Sbjct 106 SNHSLKEKQDDKLFIAYIATNLHLIDGLKNDHDYQPYNKDGNGLSFPFDQKTQSFLLGRF 165 Query 191 IDAQTVQKLTPEYQNLKHLNNRNSDALVSIQTSKLPKTAYTATDFI-----KTAQYKYNH 245 + + K PE N + DA+V IQTS LPKTAY D I +T+ Sbjct 166 ANPKINSK--PEEMNYQVQTRLKQDAMVFIQTSTLPKTAYAGIDPINFDYHETSDESGFW 223 Query 246 IVSNTVYELDLFQNAVSYADFAVLELELNLANNRDQQIFDSFINPAVTAYEKLGNSLGLF 305 + + SYADFAVLE+ L L N D +I+ +I PAV AY++LG+ +F Sbjct 224 TKKQSTANFPRTRTLKSYADFAVLEVPLFLDNANDAKIYQEWIRPAVQAYKELGDVENIF 283 Query 306 SNLQLDQYVDDTHYLLGYPLLKREKTSY-------WNLPQKGYSSPLYENSNKEVSRITR 358 + +Y+++T+YLLGYP+ K + W Q+ +S L + + + T Sbjct 284 AKTPYAEYINNTYYLLGYPVTNNNKYQFILGQDEKWKFSQQ--TSVLKHYQKQPLQQRTV 341 Query 359 NIRKDDEIPGSRLVQNQINYLPFAQ----------NDPKGVMDFSKYLNYVFNYHEKQYQ 408 + +DD +P ++++ ++ N G+++++ + +YH +Y+ Sbjct 342 YVERDDGLPTLTFNEDKLTHVQGTDLINVDQITDTNLGNGLINYAGLSRFTLSYHNVEYK 401 Query 409 HHGYGLLLEDTDFPGGSSGSPLFNQNKQINSIYFAALPSKS--------YGVSQILRATQ 460 GYG +L +T+FPGGSSGS +FN+ KQ+ SIYF +L + + G+ QILR T Sbjct 402 LFGYGTILNNTNFPGGSSGSAVFNKEKQLTSIYFGSLINVTTGNNRNVNLGLGQILR-TY 460 Query 461 NKDKSKN-----YDLIFGDSNTKKYYAQFAKEHKTHLYHQILQSNDEQFRF 506 N + SK+ YDLIFGD NT K+YAQFAKE +THL+++I S + F Sbjct 461 NTNNSKHSAPSSYDLIFGDKNTIKFYAQFAKEKQTHLWNKIQTSVNSSISF 511 Lambda K H a alpha 0.315 0.133 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 62630511 Query= gi|13508332|ref|NP_110282.1| hypothetical protein MPN593 [Mycoplasma pneumoniae M129] Length=122 ***** No hits found ***** Lambda K H a alpha 0.332 0.139 0.444 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8930705 Query= gi|13508333|ref|NP_110283.1| hypothetical protein MPN594 [Mycoplasma pneumoniae M129] Length=122 ***** No hits found ***** Lambda K H a alpha 0.332 0.143 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8930705 Query= gi|13508334|ref|NP_110284.1| GALACTOSE-6-PHOSPHATE ISOMERASE AND RIBOSE 5-PHOSPHATE ISOMERASE B; bifunctional [Mycoplasma pneumoniae M129] Length=152 Score E Sequences producing significant alignments: (Bits) Value gi|12045258|ref|NP_073069.1| ribose-5-phosphate isomerase, putati... 214 1e-74 >gi|12045258|ref|NP_073069.1| ribose-5-phosphate isomerase, putative [Mycoplasma genitalium G-37] Length=152 Score = 214 bits (546), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 100/150 (67%), Positives = 121/150 (81%), Gaps = 1/150 (1%) Query 3 MNHPIYIASDHTGLELKSLVIKHLEQQKLQVIDLGPTELDPLDDYPDYAFLLAQTMQANP 62 M+ I+IASDHTGL LK ++ +HL+ ++ V+DLGP D DDYPD+AFL+A ++ N Sbjct 1 MSFNIFIASDHTGLTLKKIISEHLKTKQFNVVDLGPNYFDANDDYPDFAFLVADKVKKNS 60 Query 63 NS-LGILICGTGVGVCMAANKAKGILAALVVDSKTAALARQHDDANVLCLSSRFVVPEEN 121 + LGILICGTGVGVCMAANK KG+LAALVV KTAALARQHD+ANVLCLSSRFV EN Sbjct 61 DKDLGILICGTGVGVCMAANKVKGVLAALVVSEKTAALARQHDNANVLCLSSRFVTDSEN 120 Query 122 IKIVDEFLQAQFEGGRHSKRVGKIIAYERE 151 IKIVD+FL+A FEGGRH +R+ KII YE+E Sbjct 121 IKIVDDFLKANFEGGRHQRRIDKIIRYEKE 150 Lambda K H a alpha 0.319 0.136 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12943893 Query= gi|13508335|ref|NP_110285.1| hypothetical protein MPN596 [Mycoplasma pneumoniae M129] Length=569 Score E Sequences producing significant alignments: (Bits) Value gi|12045259|ref|NP_073070.1| hypothetical protein MG397 [Mycoplas... 597 0.0 >gi|12045259|ref|NP_073070.1| hypothetical protein MG397 [Mycoplasma genitalium G-37] Length=566 Score = 597 bits (1540), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/548 (57%), Positives = 411/548 (75%), Gaps = 0/548 (0%) Query 22 YLTIFIIVHKNQQYLEQTKALYNKLKLSNFNSVIVPFQLLRSEKKALEQPVKLLKSFQES 81 YL + + V +N L++TK LYN LKLSNFN VI PFQLLR+EK+ALEQ +K+LK FQ Sbjct 19 YLLVCLFVRQNNLLLKKTKQLYNNLKLSNFNCVISPFQLLRNEKQALEQSIKVLKQFQIK 78 Query 82 FNSEINSALEQLLVFSEPKALYNCFWFNRNIKLLRKNLQGLHDKQQRYVKLTKNAIAYFD 141 F++EINSA EQL V+S+P +Y WFNRNIKLL KNLQ L+ KQQ Y+ LTKNAI YF+ Sbjct 79 FDNEINSAFEQLTVYSKPNNIYRFIWFNRNIKLLNKNLQHLYTKQQEYINLTKNAIVYFN 138 Query 142 SSYDTLVFYRQAFCLLVSFINDFLVHKYDSLFYLNIINRISLLFKDVELHIKNKDVKQQN 201 +SYD LVFYRQAFC L FIN+FL+ KYDSLFYLN++NRISLLFK++E I+ KDV++Q Sbjct 139 NSYDCLVFYRQAFCFLNQFINNFLIEKYDSLFYLNVLNRISLLFKEIENCIQAKDVEKQI 198 Query 202 QALNKLHNNLAQTIITASRQYFFDVKVGYLNYHFQILSQKVTQLRSMKNKAINSQEVAKF 261 LNKLHN L+QTIITA+RQY FD+K+ YL +HF++L QKV Q+ MKNK INSQ++ K Sbjct 199 AFLNKLHNILSQTIITANRQYMFDIKLSYLTHHFKVLIQKVKQMELMKNKVINSQDLLKL 258 Query 262 QELITNIGATLAECSQALGNINLALCEQRINQAKEQIDVLSNAVSVKEKAISLVVSNVDS 321 ELI NI L +C+ L N+NL LCE+ +++ +E I L AVS KEK+I+LVV N+D Sbjct 259 HELINNITIKLKDCTNFLNNLNLMLCERNMDEVQEAISWLFQAVSSKEKSINLVVENIDD 318 Query 322 FLKSINHYQQQNALLQTLMKEIELMFQNNLDTVNIINQINEHSLLIAQKTQLLNQENALT 381 F I Y+++N LL+T +K IEL+FQN D ++I ++NE+ LI + LN ++ Sbjct 319 FRNQIQQYEKKNELLKTTIKAIELVFQNETDVHDLIIELNENCDLITKNINNLNHQSLAQ 378 Query 382 EFIDYEKLFRLMSEAMKLLDGLKNLLNELFALSANKFDDYRFFVYTLDDFRFKFFQIENL 441 I+YEKLF LMS+ + L+ LKN L +L L+ NKFDDYRFFVYTLDDFRFKFFQIENL Sbjct 379 NQINYEKLFYLMSQTNQALEKLKNSLTDLLNLAVNKFDDYRFFVYTLDDFRFKFFQIENL 438 Query 442 IANEELIISEKTLKIISQAKHQFDDIFTQAKNDYEGAFSYLNEKVRFFQNQLTHVIVDVV 501 I++++L + KTL++I+++K + D+IFT+A N+Y G F+ +EK+ Q QLT VI DVV Sbjct 439 ISDQDLKVPAKTLQVINKSKLELDNIFTEANNNYLGTFNLFSEKIDLLQIQLTEVICDVV 498 Query 502 GLMNLRSMCKHTFIFANKYRQESPQINESLETLTQFYQQQNYSETLSGLISLLGKIKSSA 561 L+NLR MCK F+FANKYRQ+S I+ SLE LT+ Y +QNY +TL GLI+LL KIK++ Sbjct 499 SLVNLRLMCKQAFLFANKYRQKSSHIDRSLEQLTKLYNRQNYPDTLEGLINLLTKIKTNT 558 Query 562 KQHHLDLN 569 KQ +L+LN Sbjct 559 KQDYLELN 566 Lambda K H a alpha 0.322 0.135 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 68976726 Query= gi|13508336|ref|NP_110286.1| ATP synthase epsilon chain [Mycoplasma pneumoniae M129] Length=133 Score E Sequences producing significant alignments: (Bits) Value gi|12045260|ref|NP_073071.1| ATP synthase F1, subunit epsilon (at... 218 2e-76 >gi|12045260|ref|NP_073071.1| ATP synthase F1, subunit epsilon (atpC) [Mycoplasma genitalium G-37] Length=133 Score = 218 bits (554), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 103/133 (77%), Positives = 121/133 (91%), Gaps = 0/133 (0%) Query 1 MQPLRFLVLSPSGIKLDQAIISAQVKTTNGYLGLNYNRAPLIAAVQSHFCKILFANNTRR 60 M+ LRFLVLSPSGIKLD+ IISAQVKTT GY+GLN+NRAPLIAA+QSH CKI+FA+ T+R Sbjct 1 MKLLRFLVLSPSGIKLDKTIISAQVKTTEGYIGLNFNRAPLIAAIQSHLCKIIFADQTKR 60 Query 61 NAIIGAGLVLIKKTEAKIFTENFVFEDEIDLEATLKRKAELERQMNHSKDLKLNIKIEQN 120 AIIGAGL+LIKKTEAKIFTENFVF DE+D+ TLKRK ELER+++H KD KLN+KIEQN Sbjct 61 EAIIGAGLMLIKKTEAKIFTENFVFADEVDINETLKRKTELERKIHHIKDAKLNVKIEQN 120 Query 121 LMFELLKLSNKQR 133 LMFELLKLS+K++ Sbjct 121 LMFELLKLSSKKK 133 Lambda K H a alpha 0.321 0.136 0.367 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10360391 Query= gi|13508337|ref|NP_110287.1| ATP synthase beta chain [Mycoplasma pneumoniae M129] Length=475 Score E Sequences producing significant alignments: (Bits) Value gi|12045261|ref|NP_073072.1| ATP synthase F1, subunit beta (atpD)... 891 0.0 gi|12045263|ref|NP_073074.1| ATP synthase F1, subunit alpha (atpA... 85.1 2e-19 >gi|12045261|ref|NP_073072.1| ATP synthase F1, subunit beta (atpD) [Mycoplasma genitalium G-37] Length=476 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/469 (92%), Positives = 453/469 (97%), Gaps = 0/469 (0%) Query 1 MKKENITYGKVHQVIGPVVDVIFTESSQLPRIYDCLSVKLAGEELFLEAAQLIGDDIVRC 60 +KKEN+TYGKVHQVIGPVVDVIF+ES QLPR+YDCLSV+L ELFLEA QLIGDDIVRC Sbjct 2 IKKENLTYGKVHQVIGPVVDVIFSESKQLPRVYDCLSVQLKKSELFLEATQLIGDDIVRC 61 Query 61 IALGPTEGLARNEKVTNYNHPIEVPVGKNVLGRMFNVLGKPIDGKEELPKKPQLPIHRKP 120 IALGPTEGLARN KVTNYNHPIEVPVGKNVLGRMFNVLG+PIDGKE LPKKP+L IHR P Sbjct 62 IALGPTEGLARNVKVTNYNHPIEVPVGKNVLGRMFNVLGEPIDGKEPLPKKPKLSIHRNP 121 Query 121 PSFDDQSNTLEIFETGIKVIDLLTPYARGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGL 180 P+FD+Q NT++IFETGIKVIDLLTPY RGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGL Sbjct 122 PAFDEQPNTVDIFETGIKVIDLLTPYVRGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGL 181 Query 181 SVFAGVGERTREGNDLYYEMIQGGVIDKTALVFGQMNEPPGARMRVALTALTMAEYFRDH 240 SVFAGVGERTREGNDLYYEMIQGGVIDKT LVFGQMNEPPGARMRVALTALTMAEYFRDH Sbjct 182 SVFAGVGERTREGNDLYYEMIQGGVIDKTVLVFGQMNEPPGARMRVALTALTMAEYFRDH 241 Query 241 DNQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERIASTKTGSITS 300 DNQ+VLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLA EMG+LQERIASTKTGSITS Sbjct 242 DNQNVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLAIEMGKLQERIASTKTGSITS 301 Query 301 VQAIYVPADDLTDPAPATTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLDPNIVGIN 360 VQAIYVPADDLTDPAPATTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLDP++VGIN Sbjct 302 VQAIYVPADDLTDPAPATTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLDPSVVGIN 361 Query 361 HYKVALGVQNILQRFAELQDIIAILGIDELADEDKIIVERARRIRNFLSQPFFVAEKFSG 420 HYKVALGVQNILQRFAELQDIIAILGIDEL+DEDKIIVERARRIRNFLSQPFFVAEKFSG Sbjct 362 HYKVALGVQNILQRFAELQDIIAILGIDELSDEDKIIVERARRIRNFLSQPFFVAEKFSG 421 Query 421 IAGKYVPLSDTIQSFKEILDGKHDDLPEQAFFFVGTIQEAVEKAKRLKK 469 IAGKYV L+DT+QSFKEIL+GKHD LPEQAFF+VGTIQEAVEKAKRL + Sbjct 422 IAGKYVSLNDTVQSFKEILEGKHDHLPEQAFFYVGTIQEAVEKAKRLNQ 470 >gi|12045263|ref|NP_073074.1| ATP synthase F1, subunit alpha (atpA) [Mycoplasma genitalium G-37] Length=518 Score = 85.1 bits (209), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/335 (24%), Positives = 147/335 (44%), Gaps = 11/335 (3%) Query 82 IEVPVGKNVLGRMFNVLGKPIDGKEELPKKPQLPIHRKPPSFDDQSNTLEIFETGIKVID 141 ++ PVG +LGR+ N LG+ IDG+ ++ I + P + + + ETGI ID Sbjct 95 MKTPVGDVMLGRIVNALGEAIDGRGDIKATEYDQIEKIAPGVMKRKSVNQPLETGILTID 154 Query 142 LLTPYARGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGLSVFAGVGERTREGNDLYYEMI 201 L P +G + + G GKT + + I N K+ V+ +G++ + +++ Sbjct 155 ALFPIGKGQRELIVGDRQTGKTAIAIDTIIN-QKDKDVYCVYVAIGQKNSSVAQIVHQLE 213 Query 202 QGGVIDKTALVFGQMNEPPGARMRVALTALTMAEYFRDHDNQDVLLFIDNIFRFTQAGSE 261 + T +V ++ T +T+AEY+ +DVL+ D++ + A Sbjct 214 VNDSMKYTTVVCATASDSDSMVYLSPFTGITIAEYWL-KKGKDVLIVFDDLSKHAVAYRT 272 Query 262 VSALLGRMPSAVGYQPTLATEMGQLQERIASTKT----GSITSVQAIYVPADDLTDPAPA 317 +S LL R P + + +L ER GSIT++ I A D++ P Sbjct 273 LSLLLKRPPGREAFPGDVFYLHSRLLERACKLNDENGGGSITALPIIETQAGDISAYIPT 332 Query 318 TTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLD-PNIVGINHYKVALGVQNILQRFA 376 + D + + ++ G PAI S SR+ I +L ++ L +++ Sbjct 333 NVISITDGQLFMVSSLFNAGQRPAIQIGLSVSRVGSAAQTKAIKQQTGSLKLE--LAQYS 390 Query 377 ELQDIIAILGIDELADEDKIIVERARRIRNFLSQP 411 EL D + G D L + K ++E +R+ + QP Sbjct 391 EL-DSFSQFGSD-LDENTKKVLEHGKRVMEMIKQP 423 Lambda K H a alpha 0.319 0.138 0.392 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 56185313 Query= gi|13508338|ref|NP_110288.1| ATP synthase gamma chain [Mycoplasma pneumoniae M129] Length=279 Score E Sequences producing significant alignments: (Bits) Value gi|12045262|ref|NP_073073.1| ATP synthase F1, subunit gamma (atpG... 439 4e-159 >gi|12045262|ref|NP_073073.1| ATP synthase F1, subunit gamma (atpG) [Mycoplasma genitalium G-37] Length=279 Score = 439 bits (1128), Expect = 4e-159, Method: Compositional matrix adjust. Identities = 205/279 (73%), Positives = 243/279 (87%), Gaps = 0/279 (0%) Query 1 MAFIQEIKRKMTTVQSTIKITNAMKMVSRAKFVRFKKQFKEVNYFFNEFYKAVGQVVLSL 60 MAFIQEIKR+M TV+STIKITNAMKMVSRAKF++FKKQF+E++ FFNEFYKAVGQVV+SL Sbjct 1 MAFIQEIKRRMNTVKSTIKITNAMKMVSRAKFIKFKKQFQEISLFFNEFYKAVGQVVVSL 60 Query 61 KKMPKPLENPKTLWVMMSSSLGLCGQHNTNMNKLLQTKFQPGDKIFFLGRKNQSFWNKGD 120 K+ K +N KTLW+MMSSSLGLCGQHN+NMNKLL+ F+ DKIFFLGRKNQSFWNK Sbjct 61 KEPKKKPDNQKTLWIMMSSSLGLCGQHNSNMNKLLKANFKADDKIFFLGRKNQSFWNKNS 120 Query 121 TDNPTVGYVDIQDRDLSFDYCQQVSDQIMEQFDLHQLDRICIIYTQFKNPLIQHANSFQV 180 NP VG++DIQDRD++FDYCQ + DQIM+ F +LDRIC++YT+FKN LIQ + FQV Sbjct 121 QYNPAVGFIDIQDRDINFDYCQTIFDQIMDAFKEFKLDRICMVYTKFKNSLIQQSQLFQV 180 Query 181 FPFDVAMFKAFNPVKMEQKLDFEPDEETIIKLISPQFFDIALYGGLVETKLCESASRQNA 240 FPFDV FK NPV +Q+LDFEPD+ TII LI+PQFFD+ALYGGLVETKLCESASRQNA Sbjct 181 FPFDVETFKTLNPVVTDQQLDFEPDQATIINLITPQFFDVALYGGLVETKLCESASRQNA 240 Query 241 MDAAAKNAKDLYEKYSIQFNKLRQNSITQEIIEIIGGIS 279 M+AA KNAKDL +KY++QFNKLRQNSIT+EIIE+IGG++ Sbjct 241 MEAATKNAKDLLDKYTLQFNKLRQNSITEEIIEVIGGMN 279 Lambda K H a alpha 0.322 0.136 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29931930 Query= gi|13508339|ref|NP_110289.1| ATP synthase alpha chain [Mycoplasma pneumoniae M129] Length=518 Score E Sequences producing significant alignments: (Bits) Value gi|12045263|ref|NP_073074.1| ATP synthase F1, subunit alpha (atpA... 944 0.0 gi|12045261|ref|NP_073072.1| ATP synthase F1, subunit beta (atpD)... 95.9 7e-23 >gi|12045263|ref|NP_073074.1| ATP synthase F1, subunit alpha (atpA) [Mycoplasma genitalium G-37] Length=518 Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/517 (86%), Positives = 490/517 (95%), Gaps = 0/517 (0%) Query 1 MADKLNEYVALIKNEIKKYSKQIFNSEIGKVISVADGIAKVSGLENALLNELIEFENNVQ 60 MADKLNEYVALIK EIKKYSK+IFNSEIG+VISVADGIAKVSGLENALLNELI+FENN+Q Sbjct 1 MADKLNEYVALIKTEIKKYSKKIFNSEIGQVISVADGIAKVSGLENALLNELIQFENNIQ 60 Query 61 GIALNLEQNTVGVALFGDYSKIREGSTAKRTHNVMQTPVGDVMLGRIVNALGEPVDGRGP 120 GI LNLEQNTVG+ALFGDYS +REGSTAKRTH+VM+TPVGDVMLGRIVNALGE +DGRG Sbjct 61 GIVLNLEQNTVGIALFGDYSSLREGSTAKRTHSVMKTPVGDVMLGRIVNALGEAIDGRGD 120 Query 121 IKAEEFDQVEKIAPGVMTRKTVNQPLETGILTIDALFPIGKGQRELIVGDRQTGKTSIAI 180 IKA E+DQ+EKIAPGVM RK+VNQPLETGILTIDALFPIGKGQRELIVGDRQTGKT+IAI Sbjct 121 IKATEYDQIEKIAPGVMKRKSVNQPLETGILTIDALFPIGKGQRELIVGDRQTGKTAIAI 180 Query 181 DTIINQRGKDVYCVYVAMGQKNSSVAQIVHQLEVTDSMKYTTVVCATASDPASMIYLTPF 240 DTIINQ+ KDVYCVYVA+GQKNSSVAQIVHQLEV DSMKYTTVVCATASD SM+YL+PF Sbjct 181 DTIINQKDKDVYCVYVAIGQKNSSVAQIVHQLEVNDSMKYTTVVCATASDSDSMVYLSPF 240 Query 241 TGITIAEYWLKQGKDVLIVFDDLSKHAIAYRTLSLLLRRPPGREAFPGDVFYLHSRLLER 300 TGITIAEYWLK+GKDVLIVFDDLSKHA+AYRTLSLLL+RPPGREAFPGDVFYLHSRLLER Sbjct 241 TGITIAEYWLKKGKDVLIVFDDLSKHAVAYRTLSLLLKRPPGREAFPGDVFYLHSRLLER 300 Query 301 ACRLNEEHGGGSITALPIIETQAGDISAYIPTNVISITDGQLFMVSNLFNSGQRPAIHVG 360 AC+LN+E+GGGSITALPIIETQAGDISAYIPTNVISITDGQLFMVS+LFN+GQRPAI +G Sbjct 301 ACKLNDENGGGSITALPIIETQAGDISAYIPTNVISITDGQLFMVSSLFNAGQRPAIQIG 360 Query 361 LSVSRVGSAAQIKAIKQQTGSLKLELAQYSELDSFSQFGSDLDENTKQILERGKRVMEMI 420 LSVSRVGSAAQ KAIKQQTGSLKLELAQYSELDSFSQFGSDLDENTK++LE GKRVMEMI Sbjct 361 LSVSRVGSAAQTKAIKQQTGSLKLELAQYSELDSFSQFGSDLDENTKKVLEHGKRVMEMI 420 Query 421 KQPNGKPYSQTHEALFLFAIAKSFIKFIPLDYIAKFKQRIMEEFDKEHPIYKEIATQKSF 480 KQPNGKPYSQ HEALFLFAI K+FIKFIP+D IAKFKQRI EEF+ HP++KE++ +K F Sbjct 421 KQPNGKPYSQVHEALFLFAINKAFIKFIPVDEIAKFKQRITEEFNGSHPLFKELSNKKEF 480 Query 481 SEALEAQTNTAFKALVKRFVSALPDYDITKYGTMEEL 517 +E LE++T TAFK LVKRF+S L DYDITK+G++EEL Sbjct 481 TEDLESKTKTAFKMLVKRFISTLTDYDITKFGSIEEL 517 >gi|12045261|ref|NP_073072.1| ATP synthase F1, subunit beta (atpD) [Mycoplasma genitalium G-37] Length=476 Score = 95.9 bits (237), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 87/335 (26%), Positives = 149/335 (44%), Gaps = 11/335 (3%) Query 95 MQTPVGDVMLGRIVNALGEPVDGRGPIKAEEFDQVEKIAPGVMTRKTVNQPLETGILTID 154 ++ PVG +LGR+ N LGEP+DG+ P+ + + + P + ETGI ID Sbjct 83 IEVPVGKNVLGRMFNVLGEPIDGKEPLPKKPKLSIHRNPPAFDEQPNTVDIFETGIKVID 142 Query 155 ALFPIGKGQRELIVGDRQTGKTSIAIDTIIN-QRGKDVYCVYVAMGQKNSSVAQIVHQLE 213 L P +G + + G GKT + + I N + V+ +G++ + +++ Sbjct 143 LLTPYVRGGKIGLFGGAGVGKTVLVQELIHNIAKEHSGLSVFAGVGERTREGNDLYYEMI 202 Query 214 VTDSMKYTTVVCATASDPASMIYLTPFTGITIAEYWLKQ-GKDVLIVFDDLSKHAIAYRT 272 + T +V ++P T +T+AEY+ ++VL+ D++ + A Sbjct 203 QGGVIDKTVLVFGQMNEPPGARMRVALTALTMAEYFRDHDNQNVLLFIDNIFRFTQAGSE 262 Query 273 LSLLLRRPPGREAFPGDVFYLHSRLLERACRLNEEHGGGSITALPIIETQAGDISAYIPT 332 +S LL R P + + +L ER GSIT++ I A D++ P Sbjct 263 VSALLGRMPSAVGYQPTLAIEMGKLQERIASTKT----GSITSVQAIYVPADDLTDPAPA 318 Query 333 NVISITDGQLFMVSNLFNSGQRPAIHVGLSVSRV--GSAAQIKAIKQQTGSLKLELAQYS 390 + D + + N+ G PAI+ S SR+ S I K G + L +++ Sbjct 319 TTFTHLDAKTVLDRNIAALGIFPAINPLESTSRLLDPSVVGINHYKVALGVQNI-LQRFA 377 Query 391 EL-DSFSQFGSD-LDENTKQILERGKRVMEMIKQP 423 EL D + G D L + K I+ER +R+ + QP Sbjct 378 ELQDIIAILGIDELSDEDKIIVERARRIRNFLSQP 412 Lambda K H a alpha 0.317 0.135 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 62210172 Query= gi|13508340|ref|NP_110290.1| ATP synthase delta chain [Mycoplasma pneumoniae M129] Length=178 Score E Sequences producing significant alignments: (Bits) Value gi|12045264|ref|NP_073075.1| ATP synthase F1, subunit delta (atpH... 271 3e-96 >gi|12045264|ref|NP_073075.1| ATP synthase F1, subunit delta (atpH) [Mycoplasma genitalium G-37] Length=176 Score = 271 bits (693), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 127/175 (73%), Positives = 156/175 (89%), Gaps = 0/175 (0%) Query 1 MINAQAFGMALFQLSEEEKKVKKVYDQSHDFLKLARNFKDGSLAALLNAYTLTKKEKLKL 60 MINAQAFG ALFQLSEE+K+VKK+Y++ H FLKL RNFKDGSL+ LLN+YTLTK +K++L Sbjct 1 MINAQAFGTALFQLSEEQKQVKKIYEECHFFLKLMRNFKDGSLSFLLNSYTLTKPDKIRL 60 Query 61 IDKLFKNHFCDLFVDFLKTIVLKGYFNLVEQALKYFFDCVENEKHVQFIRIITAFELSAP 120 +DKLFKNHFC +FVDFLK I+LKGYF LVEQA+KYFFD VE++KH+QFI+IITAFELS+ Sbjct 61 VDKLFKNHFCQVFVDFLKVIILKGYFTLVEQAIKYFFDNVESQKHIQFIKIITAFELSSK 120 Query 121 QLKRIVAAMEKKLNSKIVYKTEIDKSLISGIRIESSAQLFEKNIRDQLSRLMEQF 175 QL +I+A MEK+ +K+VYKTEID+SLISGIRIESS+ LFEKN+RD+L R+M F Sbjct 121 QLNKIIAIMEKRFKTKVVYKTEIDRSLISGIRIESSSHLFEKNVRDELKRIMAHF 175 Lambda K H a alpha 0.323 0.137 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 16324997 Query= gi|13508341|ref|NP_110291.1| ATP synthase B chain [Mycoplasma pneumoniae M129] Length=207 Score E Sequences producing significant alignments: (Bits) Value gi|12045265|ref|NP_073076.1| ATP synthase F0, subunit B (atpF) [M... 294 2e-104 >gi|12045265|ref|NP_073076.1| ATP synthase F0, subunit B (atpF) [Mycoplasma genitalium G-37] Length=208 Score = 294 bits (753), Expect = 2e-104, Method: Compositional matrix adjust. Identities = 145/200 (73%), Positives = 175/200 (88%), Gaps = 0/200 (0%) Query 8 VFKTTLVALSFALFALFLVSCTENVKEIKSESVINELFPNLWVFLAHLLAFVILLFLLLF 67 VFK +L+ SF +LFLVSCTENV+EIKS SVINELFPN WVF+ HLLAF ILL L++F Sbjct 8 VFKWSLLVFSFFTLSLFLVSCTENVREIKSSSVINELFPNFWVFITHLLAFFILLTLMIF 67 Query 68 LFWKPTQKFLNQRKALLEEQVNQANSLEQQAQALLQQANQRHENSLVVAKEIVDQANYEA 127 LFWKPTQ+FLN RK LLE Q+ QAN LE+QA+ LL+++NQRHE +L+V+KEIVDQANYEA Sbjct 68 LFWKPTQRFLNNRKNLLEAQIKQANELEKQARNLLEESNQRHEKALIVSKEIVDQANYEA 127 Query 128 LQLKSEIEKKANRQANLMIFQARQEIEKEKRLIQEQSLKESVELAMLAAKELIIKKVDVK 187 LQLKSEIEK ANRQANLMIFQARQEIEKE+R ++EQS+KESVELAMLAA+ELI+KK+D K Sbjct 128 LQLKSEIEKTANRQANLMIFQARQEIEKERRSLKEQSIKESVELAMLAAQELILKKIDQK 187 Query 188 ADKAFIEEFIRELEAEDDHD 207 +D+ FI++FIR+LEA + D Sbjct 188 SDREFIDKFIRDLEANETED 207 Lambda K H a alpha 0.321 0.133 0.351 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20301885 Query= gi|13508342|ref|NP_110292.1| ATP synthase C chain [Mycoplasma pneumoniae M129] Length=105 Score E Sequences producing significant alignments: (Bits) Value gi|12045266|ref|NP_073077.1| ATP synthase F0, subunit C (atpE) [M... 156 6e-53 >gi|12045266|ref|NP_073077.1| ATP synthase F0, subunit C (atpE) [Mycoplasma genitalium G-37] Length=102 Score = 156 bits (394), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 79/106 (75%), Positives = 94/106 (89%), Gaps = 5/106 (5%) Query 1 MEHVNEILATVGRILHET-TTANTNVANKSTERLGAYIGAGITMVGGATVGLGQGYIFGK 59 MEHVNEILATVG IL +T TT + N ++ +LGAYIGAG+TM+ G+TVG+GQGYIFGK Sbjct 1 MEHVNEILATVGVILQQTQTTQDVN----ASAKLGAYIGAGVTMIAGSTVGIGQGYIFGK 56 Query 60 AVEAVARNPEVEKQVFKLIFIGSAISESSSIYSLLIAFILIFVSGA 105 AVEA+ARNPEVEKQVFKLIFIGSA+SES++IY LLI+FILIFV+GA Sbjct 57 AVEAIARNPEVEKQVFKLIFIGSAVSESTAIYGLLISFILIFVAGA 102 Lambda K H a alpha 0.319 0.135 0.362 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6779158 Query= gi|13508343|ref|NP_110293.1| ATP synthase A chain [Mycoplasma pneumoniae M129] Length=293 Score E Sequences producing significant alignments: (Bits) Value gi|12045267|ref|NP_073078.1| ATP synthase F0, subunit A (atpB) [M... 441 9e-160 >gi|12045267|ref|NP_073078.1| ATP synthase F0, subunit A (atpB) [Mycoplasma genitalium G-37] Length=292 Score = 441 bits (1135), Expect = 9e-160, Method: Compositional matrix adjust. Identities = 208/292 (71%), Positives = 248/292 (85%), Gaps = 0/292 (0%) Query 1 MSPRAIVLKEPNGVNLVPHEGIFDISPVAGWKPLLPTDQVFGIFVVFIVLLTLFLVYWIK 60 MSPR IVLKE N ++ + ++ IFDISP++GWKP PTDQ+ GIF+VF++LLT F+ Y +K Sbjct 1 MSPREIVLKETNQIDFISNQSIFDISPISGWKPFAPTDQILGIFIVFVLLLTFFIFYKLK 60 Query 61 LRKADPLRNHSSFVLLMQMLFVWAQDTTADLIGEENKKFTPYFLMLLLYLVSSNLIGLLG 120 L+KAD L+N+S F+LL QMLFVW QDTTADL+GEENKKF PYFLMLLLY+VSSNL+ LLG Sbjct 61 LKKADSLKNNSYFLLLFQMLFVWVQDTTADLLGEENKKFAPYFLMLLLYIVSSNLVSLLG 120 Query 121 GISPPTSSLTFTFSLGLATFLGIVIMGIRYQRWSFFKSFTFNITIKGKKYSTLIPNPLSF 180 GISPPTSSLTFTFSLGLATF+GIV+MGIRYQRW+FFK F F IT+KGKKYST IPNP S Sbjct 121 GISPPTSSLTFTFSLGLATFIGIVVMGIRYQRWNFFKEFAFGITVKGKKYSTFIPNPFSI 180 Query 181 LGEFAPLFSISLRLWGNILGGTLILALFYNFWFFAFSTLSNKPLALSLGAIFAGILTPAL 240 L FAPLFSISLRLWGNIL GT+ILALFYNFW F FS+++N+PLALSLG +FAG++TP L Sbjct 181 LSGFAPLFSISLRLWGNILAGTVILALFYNFWIFIFSSINNQPLALSLGTVFAGLITPVL 240 Query 241 HVYFDVVVGTLQGYVFVMLTYNYWAKMRNIGLEESQEAAQRLQNLEVAKEII 292 H+YFDV+ G LQGYVFVMLTYNYWAKMRN GLE + + + ++V +E I Sbjct 241 HIYFDVIAGVLQGYVFVMLTYNYWAKMRNQGLENNNASELHFKGIKVIQENI 292 Lambda K H a alpha 0.328 0.144 0.442 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31676927 Query= gi|13508344|ref|NP_110294.1| hypothetical protein MPN605 [Mycoplasma pneumoniae M129] Length=157 Score E Sequences producing significant alignments: (Bits) Value gi|12045268|ref|NP_073079.1| hypothetical protein MG406 [Mycoplas... 134 2e-43 >gi|12045268|ref|NP_073079.1| hypothetical protein MG406 [Mycoplasma genitalium G-37] Length=113 Score = 134 bits (338), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 64/113 (57%), Positives = 82/113 (73%), Gaps = 0/113 (0%) Query 45 LLPFPFVALSVVGLLKLGDFFEKFKHLSKQRVTVFFGSFFVARYLLYLIPVLLAFFIRPQ 104 +LP PF L+ + +L+L FF K++ KQ+ FF FF ARYL+YLIPV+++F + P Sbjct 1 MLPLPFAVLNSLSVLRLASFFASLKNVKKQKAVSFFAFFFTARYLIYLIPVIISFVVTPS 60 Query 105 YFHVIATIISTLFFPLLKIVISFAWLPLEYHCKNLISKLNKKHVTTGDSFKRT 157 F+ IATIISTLFFP+L +V+SF WLPLEY NLISK +KHV TGDSFKR Sbjct 61 IFNTIATIISTLFFPILNLVLSFVWLPLEYFFINLISKSKRKHVATGDSFKRN 113 Lambda K H a alpha 0.334 0.147 0.471 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13480629 Query= gi|13508345|ref|NP_110295.1| enolase (eno) [Mycoplasma pneumoniae M129] Length=456 Score E Sequences producing significant alignments: (Bits) Value gi|12045269|ref|NP_073080.1| enolase (eno) [Mycoplasma genitalium... 741 0.0 >gi|12045269|ref|NP_073080.1| enolase (eno) [Mycoplasma genitalium G-37] Length=458 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/444 (80%), Positives = 396/444 (89%), Gaps = 0/444 (0%) Query 11 KIADLFAYQVFDSRGFPTVACVVKLASGHTGEAMVPSGASTGEKEAIELRDGDPKAYFGK 70 KI D+FAYQVFDSRG PTVACVVKLASGH GEAMVPSGASTGEKEAIELRD DPK YFGK Sbjct 11 KITDIFAYQVFDSRGVPTVACVVKLASGHVGEAMVPSGASTGEKEAIELRDNDPKNYFGK 70 Query 71 GVSQAVQNVNQTIAPKLIGLNATDQAAIDALMIQLDGTPNKAKLGANAILAVSLAVAKAA 130 GV++AV NVN+ IAPKLIGLNA DQ +D MI+LD TPNKAKLGANAIL+VSLAV+KAA Sbjct 71 GVNEAVDNVNKVIAPKLIGLNAFDQLTVDQAMIKLDNTPNKAKLGANAILSVSLAVSKAA 130 Query 131 ASAQKTSLFKYLANQVMGLNKTEFILTVPMLNVINGGAHADNNIDFQEFMIMPLGANSMH 190 A AQ +SLF+Y++N+++GLN T F+L VPMLNVINGGAHADN IDFQEFMIMPLGA MH Sbjct 131 AKAQNSSLFQYISNKLIGLNTTNFVLPVPMLNVINGGAHADNYIDFQEFMIMPLGAKKMH 190 Query 191 QALKMASETFHALQKLLKQRGLNTNKGDEGGFAPNLKLAEEALDLMVEAIKAAGYQPGSD 250 +ALKMASETFHALQ LLK+RGLNTNKGDEGGFAPNLKLAE+ALD+MVEAIK AGY+P D Sbjct 191 EALKMASETFHALQNLLKKRGLNTNKGDEGGFAPNLKLAEDALDIMVEAIKLAGYKPWDD 250 Query 251 IAIALDVAASEFYDDTTKRYVFKKGIKAKILDEKEWSLTTAQMIAYLKKLTEQYPIISIE 310 IAIA+DVAASEFYD+ K YVFKKGIKA IL+ K+WSLT+ +MIAYL+KLT++YPIISIE Sbjct 251 IAIAIDVAASEFYDEDKKLYVFKKGIKANILNAKDWSLTSKEMIAYLEKLTKKYPIISIE 310 Query 311 DGLSEHDWEGMETLTKTLGQHIQIVGDDLYCTNPAIAEKGVAHKATNSILIKLNQIGTLT 370 DGLSE+DWEGM LTKT+G HIQIVGDD YCTN +A+KGVA TNSILIKLNQIG+++ Sbjct 311 DGLSENDWEGMNQLTKTIGSHIQIVGDDTYCTNAELAKKGVAQNTTNSILIKLNQIGSIS 370 Query 371 ETIKAINIAKDANWSQVISHRSGETEDTTIADLAVAACTGQIKTGSMSRSERIAKYNRLL 430 ETI+ I +AK ANWSQVISHRSGETEDTTIADLAVAA TGQIKTGSMSRSERIAKYNRLL Sbjct 371 ETIQTIEVAKKANWSQVISHRSGETEDTTIADLAVAAQTGQIKTGSMSRSERIAKYNRLL 430 Query 431 QIELELGNNAKYLGWNTFKNIKPQ 454 IE+ELG+ KYLGWNTF NIKP+ Sbjct 431 YIEIELGDKGKYLGWNTFTNIKPK 454 Lambda K H a alpha 0.315 0.130 0.363 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 53848651 Query= gi|13508346|ref|NP_110296.1| peptide methionine sulfoxide reductase [Mycoplasma pneumoniae M129] Length=157 Score E Sequences producing significant alignments: (Bits) Value gi|12045270|ref|NP_073081.1| peptide methionine sulfoxide reducta... 266 5e-95 >gi|12045270|ref|NP_073081.1| peptide methionine sulfoxide reductase (pmsR) [Mycoplasma genitalium G-37] Length=157 Score = 266 bits (681), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 121/157 (77%), Positives = 141/157 (90%), Gaps = 0/157 (0%) Query 1 MKQIYFGGGCFWGTQKYFDLIKGVQKTSVGYLNSNMKNPTYEQVCSGQTNAVEAVFVEYD 60 MK+IYFGGGCFWG +KYF LIKGV+KTSVGYLNS ++NP+YEQVCSG TNAVEAV VEY+ Sbjct 1 MKEIYFGGGCFWGIEKYFQLIKGVKKTSVGYLNSRIRNPSYEQVCSGYTNAVEAVKVEYE 60 Query 61 ENKVSLNELIDAFFKVIDPTIRNRQGNDIGTQYRTGVYWVDPQDEQLITQKFRELQANYP 120 E ++SL+ELI+A F+VIDPTIRNRQGNDIGTQYRTG+YW D DE++I KF +LQ NY Sbjct 61 EKEISLSELIEALFEVIDPTIRNRQGNDIGTQYRTGIYWTDSSDEKIINDKFLKLQKNYS 120 Query 121 KPIVTENRAMENYFLAEEYHQDYLKKNPHGYCHIKFD 157 KPIVTEN+ +ENY+LAEEYHQDYLKKNP+GYCHIKFD Sbjct 121 KPIVTENKKVENYYLAEEYHQDYLKKNPNGYCHIKFD 157 Lambda K H a alpha 0.319 0.137 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 13480629 Query= gi|13508347|ref|NP_110297.1| phosphate transport system regulatory protein [Mycoplasma pneumoniae M129] Length=225 Score E Sequences producing significant alignments: (Bits) Value gi|12045271|ref|NP_073082.1| regulatory protein, putative [Mycopl... 355 6e-128 >gi|12045271|ref|NP_073082.1| regulatory protein, putative [Mycoplasma genitalium G-37] Length=225 Score = 355 bits (911), Expect = 6e-128, Method: Compositional matrix adjust. Identities = 169/225 (75%), Positives = 200/225 (89%), Gaps = 0/225 (0%) Query 1 MESINYQILKRSEKKLLGLFFDYFQHVIKMHETLNKLLCEADVTKREKLIQAIYEMEDFS 60 ME+INYQILKRSEKKLL LFF+YF+HVI HETLN+LLCE ++ KR++LI+ IYEMED S Sbjct 1 MENINYQILKRSEKKLLKLFFEYFKHVINAHETLNQLLCEDNLEKRKELIKTIYEMEDQS 60 Query 61 NKSEFKLINESIWAISKNSPLTNHLRLTITIIMCSRDLERICDYANNLTKFVKHYQHLDV 120 N+SEFKLINESIW ISKNSPL +HLRLTITIIM SRDLERICDYANNLTKF++HY HLD+ Sbjct 61 NRSEFKLINESIWTISKNSPLASHLRLTITIIMSSRDLERICDYANNLTKFIEHYLHLDI 120 Query 121 SIFSKLVNLHKSVLNNLKQTFASLQDKEKPLTIQFENVTKILTEFEQQYRVVLTEYYDKV 180 IF+ LV LH+S LNNLK+TF SLQDKEKPLT+QFEN TK + EFE QYR+VLT+YY+ + Sbjct 121 KIFNNLVTLHQSALNNLKKTFESLQDKEKPLTLQFENATKTIIEFEHQYRLVLTKYYETI 180 Query 181 KDEKLSDRIFLIDLILSVKHIERINDYCYNIIKAFLFVKNPEVFN 225 ++++RIFLIDL+ SVKHIERINDYCYNIIK+FLF+KNPE+FN Sbjct 181 NKNEVTERIFLIDLVASVKHIERINDYCYNIIKSFLFIKNPEIFN 225 Lambda K H a alpha 0.323 0.138 0.390 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22673158 Query= gi|13508348|ref|NP_110298.1| phosphate specific [Mycoplasma pneumoniae M129] Length=329 Score E Sequences producing significant alignments: (Bits) Value gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 561 0.0 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 98.2 2e-25 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 87.0 2e-21 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 82.4 1e-19 gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein... 84.0 1e-19 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 82.0 4e-19 gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 77.4 1e-17 gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 77.0 2e-17 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 75.1 9e-17 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 73.6 3e-16 gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein... 71.6 2e-15 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 69.7 2e-15 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 70.1 6e-15 gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 65.1 2e-13 gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein... 60.1 3e-12 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 561 bits (1446), Expect = 0.0, Method: Compositional matrix adjust. Identities = 269/329 (82%), Positives = 300/329 (91%), Gaps = 0/329 (0%) Query 1 MKKGLKTIWHNFIQKREKVKQYRALYEKQIKQYQQKVAKLDPTTKAEEIANLQSEIDVLQ 60 M+K +K +W NF K EK+K YR LYE+QIK+Y++K+ L+ T A EI+ +++EI++L Sbjct 1 MEKNIKALWKNFQLKLEKIKHYRKLYEQQIKEYKKKITGLNNETDANEISRIKNEIEILN 60 Query 61 RLIKIKNTKDDVVKQDFDKKNVFEIENLNFWYNKDKQVLFDINLKIKRNKITALIGKSGC 120 RLIKIKNTKD+V+K+DFD+KNVFEI N NFWYNK+KQVLFDINL IKRNKITALIGKSGC Sbjct 61 RLIKIKNTKDNVIKKDFDEKNVFEIRNFNFWYNKNKQVLFDINLDIKRNKITALIGKSGC 120 Query 121 GKSTFIRCLNKLNDLNENVRWNGKIFFLGKNINSGIINDLTLRTRVGMVFQQLTPFNFSI 180 GKSTFIRCLNKLNDLNEN RW G I+FLGKNINSGIINDLTLRT VGMVFQ+LTPFNFSI Sbjct 121 GKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGIINDLTLRTSVGMVFQKLTPFNFSI 180 Query 181 FENIAYGLRAHGIHNKQAIHEIVEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARA 240 FENIAYG+RAHGIHNK AI+EIV QAL S ALWDEVKDNLHRNANTLSGGQQQRLCIARA Sbjct 181 FENIAYGIRAHGIHNKNAINEIVRQALISAALWDEVKDNLHRNANTLSGGQQQRLCIARA 240 Query 241 IALQPDVLLMDEPTSALDSIATNSIELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFAN 300 IALQPDVLLMDEPTSALDSIATNSIELLIQQLKEK+TI+IVTHSMAQTIRITDETIFFA+ Sbjct 241 IALQPDVLLMDEPTSALDSIATNSIELLIQQLKEKFTIVIVTHSMAQTIRITDETIFFAD 300 Query 301 GRVVEQGTTKQIFTRPKQKETNRYISGRN 329 GRV+EQGTTKQIFT+PKQK TN YISG+N Sbjct 301 GRVIEQGTTKQIFTKPKQKATNSYISGKN 329 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 98.2 bits (243), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 115/224 (51%), Gaps = 9/224 (4%) Query 93 NKDKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGKNI 152 N +V+ D + ++N+I +IG SG GKST + N L N+ W I+ K Sbjct 31 NNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIYIGAKQ- 89 Query 153 NSGIINDLTLRTRVGMVFQ--QLTPFNFSIFENIAYGLRAHGIHNKQAIHEIVEQALKST 210 I N LR + +VFQ + F ++ ++I +G A G Q+ ++ ++A Sbjct 90 -RKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALG----QSKYDARQKAAYYL 144 Query 211 ALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQ 270 + L RN LSGGQ++R+ IA +A++P++L+ DEPT+ LD + LI+ Sbjct 145 EMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQLIK 204 Query 271 QLKEKY-TIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIF 313 K++ T+ ++TH M + + D + A G++V+ + ++F Sbjct 205 TAKQQQRTVFMITHQMENVLEVADVVLVLAKGKLVKAASPYEVF 248 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 87.0 bits (214), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 120/233 (52%), Gaps = 21/233 (9%) Query 87 NLNFWYNKDKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIF 146 N+ F YN + ++ +++ + + ++G +G GKST + L L G+I Sbjct 13 NVAFSYN-ELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQA-----GEIK 66 Query 147 FLGKNINSGIINDLTLRTRVGMVFQQLTPFN----FSIFENIAYGLRAHGIHNKQAIHEI 202 GK ++ N LR +G++FQ P N ++ ++IA+GL + ++Q I I Sbjct 67 IFGKTVDFD--NVSYLRNNIGIIFQN--PDNQFIGITVEDDIAFGLE-NKCFSRQKIKAI 121 Query 203 VEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIAT 262 +++ T +K H LSGGQ+QR+ IA +AL P +++ DE T+ LD A Sbjct 122 IDEVTLQTQTDGFIKQEPHN----LSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAK 177 Query 263 NSI-ELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFT 314 +I + +++ K+ +I +TH M + + D+ + G++++QG ++FT Sbjct 178 KTIKQFMVKLAKQGKCVISITHDMEEVTK-ADKVLVMNEGKLIKQGKPVEVFT 229 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 82.4 bits (202), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 116/220 (53%), Gaps = 30/220 (14%) Query 97 QVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGKNINSGI 156 +L D++L+I +I ++G SG GK+T + + + ++ LG I + Sbjct 103 SILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSIS-----------LGSCIVANC 151 Query 157 IND-------LTLR-TRVGMVFQQLTPFNF-SIFENIAYGLRAHGIHNKQAIHEIVEQAL 207 + LT R +G V+Q+ S ++NIA + + I Q +I E A Sbjct 152 PLEKCTSEQLLTYRKNNLGYVYQRYNLIELLSAYDNIA--ISQNLIPKYQRRLDIEELAE 209 Query 208 KSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIEL 267 K ++K+ L++ +SGGQ+QR+ IARAI +P +LL DEPT ALDS + +I Sbjct 210 KL-----DIKEILYKFPYEMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIIN 264 Query 268 LIQQLKEKY--TIIIVTHSMAQTIRITDETIFFANGRVVE 305 L+Q + + Y TI++VTH ++ T RI + I ++G++V Sbjct 265 LLQTINKTYKQTILMVTHDVSLT-RIANRIIKISDGKIVS 303 >gi|12044865|ref|NP_072675.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=589 Score = 84.0 bits (206), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 123/260 (47%), Gaps = 34/260 (13%) Query 78 DKKNVFEIENLNFWYNKDKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNE 137 D K EN+ F YNKDK L IN +K + A++G +G GKST I L K Sbjct 347 DIKGNIRFENVAFGYNKDKPTLTGINFSVKHGDVVAIVGPTGAGKSTIINLLMKFYK--- 403 Query 138 NVRWNGKIFFLGKNINSGIINDLT---LRTRVGMVFQQLTPFNFSIFENIAYGLRAHGIH 194 + GKI+ +++ I+D+T R ++ +V Q F+ +I ENI G Sbjct 404 --PFEGKIY-----MDNFEISDVTKKAWREKISIVLQDSFLFSGTIKENIRLG------- 449 Query 195 NKQAIHEIVEQALKSTALWDEVK------DNLHRN-ANTLSGGQQQRLCIARAIALQPDV 247 + A + + A K+ D + D N A+ LS G++Q L IARA+ V Sbjct 450 RQDATDDEIIAACKTANAHDFIMRLPKGYDTYISNKADYLSVGERQLLTIARAVIRNAPV 509 Query 248 LLMDEPTSALDSIATNSIELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFANGRVVEQG 307 LL+DE TS++D + I+ I +L + T I++H ++ IR + +G+V+E G Sbjct 510 LLLDEATSSVDVHSEKLIQESIGRLMKNKTSFIISHRLS-IIRDATLIMVINDGKVLEMG 568 Query 308 TTKQI------FTRPKQKET 321 Q+ + R KQ Sbjct 569 NHDQLMKQNGFYARLKQSSV 588 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 82.0 bits (201), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 118/237 (50%), Gaps = 27/237 (11%) Query 78 DKKNVFEIENLNFWYNKD---KQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLND 134 D +N+ E++N+ + VL ++L IK + ++G SG GK+T + ++ ++ Sbjct 228 DDQNIIELKNVYKYITNGITTNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDR 287 Query 135 LNENVRWNGKIFFLGKNINSGIINDLTL----RTRVGMVFQQ--LTPFNFSIFENIAYGL 188 + +G + G N+ +ND L + VG +FQQ L P N ++ ENI G Sbjct 288 AS-----SGSVIVNGYNM--ICLNDRKLTKFRQKYVGYIFQQYGLLP-NLTVRENIEIGA 339 Query 189 RAHGIHNKQAIHEIVEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVL 248 +K+ I AL D ++ L N LSGGQQQR+ IARA A P ++ Sbjct 340 NLQPDPSKR----ISIDALLEAVGMDSLQKKL---PNELSGGQQQRVSIARAFAKNPLLI 392 Query 249 LMDEPTSALDSIATNSIELLIQQLKEKY--TIIIVTHSMAQTIRITDETIFFANGRV 303 DEPT ALD T + +K++Y T+IIVTH+ + D I+ A+G++ Sbjct 393 FGDEPTGALDLEMTQIVLKQFLAIKKRYQTTMIIVTHNNL-IANLADLVIYVADGKI 448 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 77.4 bits (189), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 74/300 (25%), Positives = 135/300 (45%), Gaps = 24/300 (8%) Query 26 YEKQIKQYQQKVAKLDPTTKAEEIANLQSEIDVLQRLIKIKNTKDDVVKQDFDKKNVFEI 85 Y Q ++ K+AKLD ++++ + ++D + N+K + F + I Sbjct 15 YHLQAQKANLKLAKLD----SKKLFSFYKKVDKIINPFYFLNSKKSI---PFFNSKLLNI 67 Query 86 E-------NLNFWYNK--DKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLN 136 E N++ + NK D Q++ + I+ NKIT + G+SG GK+T I+ L + Sbjct 68 EQDPLFFNNISVFVNKHNDGQIIKCCSGVIEPNKITVIFGESGSGKTTLIKQLGLFEKPS 127 Query 137 ENVRWNGKIFFLGKNINSGIINDLTLRTRVGMVFQQLTP--FNFSIFENIAYGLRAHGIH 194 + I + + ++G + Q+ F SI E + G ++ Sbjct 128 FGYINCANYCYFANQYQQKITKNF--KQKIGYILQKAEDQFFCDSILEEVLTG----AVN 181 Query 195 NKQAIHEIVEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPT 254 K + V A K L L +N LS GQ++RL +A +A+Q L++DEPT Sbjct 182 LKLCHKKDVNYAKKYLDLCGLENIPLIKNPIELSDGQKKRLALASVLAMQVKFLILDEPT 241 Query 255 SALDSIATNSIELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFT 314 LD +A +++ ++ +K+ I+IV+H + D+ I G+++ Q T F+ Sbjct 242 VGLDQMAISNLSKMLVAMKQTTRIVIVSHDVDFIFETADKIIHLHQGKIIHQTTVNDFFS 301 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 77.0 bits (188), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 2/116 (2%) Query 214 DEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLK 273 ++ K L + SGG +QR+ IA A+A +PD+++ DEPT+ALD + LI+QL+ Sbjct 196 NDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLR 255 Query 274 E--KYTIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFTRPKQKETNRYISG 327 + TII ++H+++ D G++VEQG ++IFT P T IS Sbjct 256 DLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNPLHPYTWALISS 311 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 75.1 bits (183), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 35/110 (32%), Positives = 65/110 (59%), Gaps = 2/110 (2%) Query 222 RNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKEK--YTII 279 R + LSGG +QR+ +AR++ ++P++LL+DEP SALD+ +++ +QQ+ +K T I Sbjct 343 RLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQKELQQIHKKSGLTFI 402 Query 280 IVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFTRPKQKETNRYISGRN 329 +VTH + + ++D + G +++ G I+ PK + +I N Sbjct 403 LVTHDQEEALVLSDRIVVMNEGNILQVGNPVDIYDSPKTEWIANFIGQAN 452 Score = 57.8 bits (138), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 58/112 (52%), Gaps = 12/112 (11%) Query 81 NVFEIENLNFWYNKDKQVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVR 140 ++ EIE LN ++ + DI+L IK+ + ++G SGCGK+T +R L D Sbjct 5 SLIEIEGLNKTFDDGYVSIRDISLNIKKGEFITILGPSGCGKTTLLRLLAGFEDPT---- 60 Query 141 WNGKIFFLGKNINSGIINDLTLRTR-VGMVFQQLTPF-NFSIFENIAYGLRA 190 GKI +N I D+ + R VFQ F + ++++NIAYGL+ Sbjct 61 -YGKI-----KVNGIDIKDMAIHKRPFATVFQDYALFSHLTVYKNIAYGLKV 106 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 73.6 bits (179), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 2/108 (2%) Query 220 LHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLKEKY--T 277 L + + +SGGQQQR+ IARAI +P +LLMDEP S LD+ I+Q +++ T Sbjct 361 LTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQWIRQFQQELQIT 420 Query 278 IIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFTRPKQKETNRYI 325 + VTH + + I+D + + G+V + GT +++ +P + R++ Sbjct 421 TVFVTHDQEEAMSISDVIVCMSTGKVQQIGTPSELYLKPANEFVARFL 468 >gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=623 Score = 71.6 bits (174), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 70/260 (27%), Positives = 116/260 (45%), Gaps = 24/260 (9%) Query 84 EIENLNFWYNKDKQVLF--DINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRW 141 E N++F F +++ K + K ++G +G GKS + L + NE Sbjct 366 EFRNISFGLGNKNNNNFLQNLSFKFEAYKTYGIVGPTGSGKSLIANIIGGLYEPNE---- 421 Query 142 NGKIFFLGKNINSGIINDLTLRTRVGMVFQQLTPFNFSIFENIAYGLRAHG-------IH 194 G+I G+ I S I+ L L +G+VFQQ F +I NI G+ + Sbjct 422 -GEILIGGEKIQS--IDSLYLSEMIGIVFQQNILFKGTISSNIKIGIETRSDWKNQSDLQ 478 Query 195 NKQAIHEIVEQALKSTAL---WDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMD 251 +A+ + A T + D N+ + LSGGQ+QR+ IAR + +P +L+ D Sbjct 479 KNEAMKNAAKIACADTFIEKFSDSYDHNVEQLGKNLSGGQKQRVAIARTLITKPRILVFD 538 Query 252 EPTSALDSIATNSIELLIQQLKEKYTIIIVTHSMAQTIRITDETIFFANGRVV----EQG 307 + SALD++ + I+ K T I+ +I+ D+ + NGR+V +Q Sbjct 539 DSMSALDALTEKKVRENIEN-DLKLTTKIIISQNINSIKHADKILVIDNGRIVGFDSDQK 597 Query 308 TTKQIFTRPKQKETNRYISG 327 K K KE+ + + G Sbjct 598 LMKNCSLYQKMKESQKDLGG 617 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 69.7 bits (169), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 106/208 (51%), Gaps = 20/208 (10%) Query 102 INLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGKNINSGIINDLT 161 INLKI + ++GKSG GK++ + ++ L+ +G F G N LT Sbjct 75 INLKILPGEFVVILGKSGSGKTSLLSLISALDR-----PTSGDSFVCGTNTICCSDAKLT 129 Query 162 -LRTR-VGMVFQQLTPF-NFSIFENIAYGLRAHGIHNKQAIHEIVEQALKSTALWDEVKD 218 LR + VG +FQQ + + +NI L + + L+ E+K+ Sbjct 130 ALRNKNVGYIFQQYGLLRDLDVDDNIKLAL---------PLKKRFNNNLEELLERLELKE 180 Query 219 NLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALD-SIATNSIELLIQQLKEK-Y 276 + H+ + LSGGQQQR+ IARA+ +P +L DEPT A++ I+ ++ ++ ++K Sbjct 181 HRHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGT 240 Query 277 TIIIVTHSMAQTIRITDETIFFANGRVV 304 TI+IVTH+ + + + I +G+++ Sbjct 241 TIVIVTHN-EKIVELAKRVIKIHDGKII 267 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 70.1 bits (170), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 7/128 (5%) Query 203 VEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALD-SIA 261 V +AL S L +++ +R + SGGQ+QR+ IARA+ +P +++ DE SALD SI Sbjct 664 VYEALDSVGL---KREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQ 720 Query 262 TNSIELLIQQLKEKY--TIIIVTHSMAQTIRITDETIFFANGRVVEQGTTKQIFTRPKQK 319 I +L + L +K+ T++ + H ++ + + I G++VE+G+ +IF+ P Sbjct 721 AQVINIL-KDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIVERGSVDEIFSNPVHP 779 Query 320 ETNRYISG 327 T I Sbjct 780 YTRSLIKA 787 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 65.1 bits (157), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 113/229 (49%), Gaps = 9/229 (4%) Query 79 KKNVFEIENLNFWYNKDK-QVLFDINLKIKRNKITALIGKSGCGKSTFIRCLNKLNDLNE 137 +K F++E+++ ++ K + D++L + N + ++G++G GKST L L + Sbjct 2 EKVAFKMEHISKSFDNGKIKANVDVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPD- 60 Query 138 NVRWNGKIFFLGKNINSGIINDLTLRTRVGMVFQQLTPF-NFSIFENIAYGLRAHGIHNK 196 +GKIF K +N D ++ ++GMV Q N+++ +NI G + Sbjct 61 ----SGKIFIGEKQVNFKSSKD-AVKHKIGMVHQHFKLIENYTVLDNIILGNESRFGFLP 115 Query 197 QAIHEIVEQALKSTALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSA 256 ++ E +K+ + +L + + L+ GQQQR+ I + + ++L+ DEPT+ Sbjct 116 LINRKVSEAKIKTIMEKYGIFVDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAV 175 Query 257 LDSIATNSIELLIQQLKE-KYTIIIVTHSMAQTIRITDETIFFANGRVV 304 L + + +I K+ TI++++H + + ++ D G+VV Sbjct 176 LSDLEIQNFLKIIANFKKLGKTIVLISHKLNEIKQVADTATVLRLGKVV 224 >gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length=253 Score = 60.1 bits (144), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 102/207 (49%), Gaps = 21/207 (10%) Query 113 ALIGKSGCGKSTFIRCLNKLNDLNENVRWNGKIFFLGKNINSGIINDLTLRTRVGMVFQQ 172 A+IG +G GKST ++ L + G IFF K + S N ++G++ Q Sbjct 16 AVIGHNGSGKSTLVKLLGGFLKAKK-----GTIFFNDKELTSVGFN------KIGILLQD 64 Query 173 --LTPFNFSIFENIAYGLRAHGIHNKQAIHEIVEQALKSTALWDEVKDNLHRNANTLSGG 230 + ++ + + + L HG+ + + +I+ + L E+KD LS G Sbjct 65 PDVQLLADTLHQELIFTLENHGVLASE-MDKIINEVLTVV----ELKDKQFTPLKKLSFG 119 Query 231 QQQRLCIARAIALQPDVLLMDEPTSALDSIATNSI-ELLIQQLKEKYTIII-VTHSMAQT 288 ++QR A +A++P + L+DE S LD+ +N + + + +K++ I+I +TH Sbjct 120 EKQRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKIVINITHDF-ND 178 Query 289 IRITDETIFFANGRVVEQGTTKQIFTR 315 + + DE IF + G ++++ + I+ + Sbjct 179 LFLADEIIFLSKGSLIKKFAPEAIYEQ 205 Lambda K H a alpha 0.319 0.135 0.382 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 36523770 Query= gi|13508349|ref|NP_110299.1| Psta /Pstc-like ABC transporter; phosphate specific [Mycoplasma pneumoniae M129] Length=651 Score E Sequences producing significant alignments: (Bits) Value gi|12045273|ref|NP_073084.1| phosphate ABC transporter, permease ... 936 0.0 >gi|12045273|ref|NP_073084.1| phosphate ABC transporter, permease protein (pstA) [Mycoplasma genitalium G-37] Length=654 Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/642 (78%), Positives = 557/642 (87%), Gaps = 3/642 (0%) Query 12 DNWLRYLSQTVAVCFLLLFISFFIFLLIEAAKTGPDFTKSLLGLEFNLGAKKASIWFPLL 71 +N LR S+T+A FL+LFISFF+FLL EA K GPDF KSL LEFNLG K+A IWFPLL Sbjct 12 ENLLRIFSKTLAFLFLVLFISFFVFLLTEATKIGPDFAKSLFNLEFNLGNKQAGIWFPLL 71 Query 72 VSFVVSIGSLIIASYIGVRTSIFLVYRCKPRIRKKLLLVIDILSGIPSVIFGLFATQILS 131 VSF+VSIG+LIIASYIGVRTS FLVYRCKP+IRKKL L+IDILSGIPSVIFGLFA+QILS Sbjct 72 VSFIVSIGALIIASYIGVRTSFFLVYRCKPKIRKKLSLIIDILSGIPSVIFGLFASQILS 131 Query 132 SIFRDVLHLPPLSLLNVIVMLSFMIIPIVISLTTNALLHVESSLMTVAISLGENKTSVIY 191 FRD+L LPPLSLLNVI MLSFMIIPIVISLTTN L +V + L++V +SLGENKTS IY Sbjct 132 IFFRDILKLPPLSLLNVIAMLSFMIIPIVISLTTNTLTYVNNDLISVVVSLGENKTSAIY 191 Query 192 KVIKKEIKAQLVVILVLAFGRAISETMAVNFILQSVNYQEVIANDRFFTSDLKTLGSVIS 251 K+IKKEIK QL VIL LAF RAISETMAVNF+LQSVNYQEVI N+RFFTSDLKTLGSVIS Sbjct 192 KIIKKEIKPQLTVILTLAFARAISETMAVNFVLQSVNYQEVINNNRFFTSDLKTLGSVIS 251 Query 252 TFIFSENGDEQVSGVLYTFGIIIFVLISFLNFFAIWSTRPKTLERYPFLKKISNFIYQVV 311 TFIFSENGDEQ++GVLY FGIII +L+S LNFFAIWS PKTLERYPFLKKISNFIYQVV Sbjct 252 TFIFSENGDEQINGVLYIFGIIILILVSLLNFFAIWSANPKTLERYPFLKKISNFIYQVV 311 Query 312 WFIPNNIGALFTDLTARRQQVKKITAANVEQRATFFKERMQTNHLNKVYTSWKILQEIFC 371 WFIPNNI ALF DLT+ RQ VKKI N+ +R+ FFKER+Q+ K+ KI QE+ C Sbjct 312 WFIPNNISALFVDLTSTRQSVKKIKVNNINERSLFFKERLQSVVWIKLNYFLKIFQELIC 371 Query 372 AVLAFGFVLGILLFVFINGSQAIQRSGSTVFSFGVDTTGRALVNTLVIILVAIGITFPIA 431 LAFGFVL ILLFVFINGS AI +GSTVFSF D+TGRALVNTLVIIL+ I ITFP+A Sbjct 372 TFLAFGFVLAILLFVFINGSVAINNNGSTVFSFEADSTGRALVNTLVIILITITITFPLA 431 Query 432 LLIAIWLNEYTKSRIAKNTFSFVIDSLSSMPSIIYGLFGLSFFLRTLQLSAGGANGTSLM 491 LLIAIWLNEY S++ KN F+FVIDSLSSMPSIIYGLFGLSFFLR LQLSAGGANGTSL+ Sbjct 432 LLIAIWLNEYNNSKVVKNVFNFVIDSLSSMPSIIYGLFGLSFFLRVLQLSAGGANGTSLI 491 Query 492 AGILTISVVVLPFLIRTCQEALNNVSWDLRVSAYALGVSKREVIWKIVLPGALKGLIIAL 551 AGILTISVV+L FLIRTCQ+ALNNVSWDLR+SA+ALG+SKREVI+KIVLP ALKGLI+AL Sbjct 492 AGILTISVVILLFLIRTCQQALNNVSWDLRISAFALGISKREVIFKIVLPSALKGLIVAL 551 Query 552 ILTINRIIAETAPFFITAGLASSNLFDLSLPGQTLTTRIYGQLFSTNSTAVDVMLETALV 611 IL+INRIIAETAPFFIT+GL+SSNLF LSLPGQTLTTRIYGQLFS NS A+ VMLET+LV Sbjct 552 ILSINRIIAETAPFFITSGLSSSNLFHLSLPGQTLTTRIYGQLFSINSNAISVMLETSLV 611 Query 612 SIVFLMFLIFLSSYLIPYLFSFNKQKWLQIKSKLQ---LWKK 650 S+VFL+ LIF SSYLIP LF NKQKWL IKSK Q LWK+ Sbjct 612 SVVFLILLIFFSSYLIPSLFLLNKQKWLVIKSKFQSFKLWKR 653 Lambda K H a alpha 0.329 0.141 0.407 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 80008375 Query= gi|13508350|ref|NP_110300.1| similar to phosphate binding protein Psts [Mycoplasma pneumoniae M129] Length=385 Score E Sequences producing significant alignments: (Bits) Value gi|12045274|ref|NP_073085.1| lipoprotein, putative [Mycoplasma ge... 483 2e-173 >gi|12045274|ref|NP_073085.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=377 Score = 483 bits (1244), Expect = 2e-173, Method: Compositional matrix adjust. Identities = 242/379 (64%), Positives = 299/379 (79%), Gaps = 9/379 (2%) Query 14 VLRVARLSRLALLSLTAVIF-SGCANINLISAVGSSSVQPLLSKLSSHYVLN-HNDKDNL 71 +L+ +L LL+L + F SGCANINLISAVGSSSVQPLL+KLSS+YVLN +ND D L Sbjct 1 MLKFRNFFKLTLLTLASAFFLSGCANINLISAVGSSSVQPLLNKLSSYYVLNENNDNDKL 60 Query 72 VEISVQAGGSSAGVKAITKGLADIGNVSKNTKSYAEENKQLWMDKKLKTITLGKDAIAVI 131 VEISVQAGGS+AG++AI G ADIGNVSKN K YA+EN++ W DKKLKT+T+GKDAIAVI Sbjct 61 VEISVQAGGSNAGIRAIINGFADIGNVSKNPKEYAKENEKKWRDKKLKTLTIGKDAIAVI 120 Query 132 YKAPSEFKGKLVLTKDNLNDLYDLFAGSKSVDINKFVENGQTTKN----SNHNLIGFPRT 187 YKAP E KGKL+LTKDN+NDLYDLFAG K+++I+KFV+ + TKN ++ L FPRT Sbjct 121 YKAPQELKGKLLLTKDNINDLYDLFAGVKTINIDKFVK--KDTKNMSNEKDYPLTSFPRT 178 Query 188 GGAFASGTAEAFLKFSGLTQTKTLDKDSKEILEGQRNYGPNARPTSETNIEAFNTFVTTL 247 GG+FASGTAEAFL FS L KTLD +++IL+G NYGP A+PTSETNIEAFNTFVT L Sbjct 179 GGSFASGTAEAFLNFSALKSDKTLDSQTRDILKGIINYGPLAKPTSETNIEAFNTFVTNL 238 Query 248 RQPNLYGMVYLSLGFVNNNMNLIKSEGFEVLKVKYDNNAVTPSSQAVSSNTYKWVRPLNS 307 + PNL+GM+YLSLGF+ NN+ IK+ GFE+L +KY+N V PS+Q VS N YKWVRPLNS Sbjct 239 QDPNLFGMIYLSLGFIQNNLQAIKNNGFEILPIKYENKEVLPSNQTVSQNEYKWVRPLNS 298 Query 308 VVSLLPKQKTLPSIQRFFNWLLFSNNSE-IKKIYDDFGVLELTADEKKKMFKTGNAEMSN 366 +VSL + K + I+ FFNWL F+ + IK IYD+FG+L+LT DEKKKMFKT ++ N Sbjct 299 IVSLSEENKNIDEIKTFFNWLFFNGKKDVIKNIYDEFGILQLTEDEKKKMFKTNDSSPMN 358 Query 367 IANFWVDDYSLNNQTFGAL 385 + NFWVDD++ +N FGA Sbjct 359 LENFWVDDFAFSNPIFGAF 377 Lambda K H a alpha 0.314 0.131 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44158353 Query= gi|13508351|ref|NP_110301.1| hypothetical protein MPN612 [Mycoplasma pneumoniae M129] Length=997 Score E Sequences producing significant alignments: (Bits) Value gi|12045275|ref|NP_073086.1| hypothetical protein MG414 [Mycoplas... 858 0.0 gi|12045276|ref|NP_073087.1| hypothetical protein MG415 [Mycoplas... 113 2e-29 >gi|12045275|ref|NP_073086.1| hypothetical protein MG414 [Mycoplasma genitalium G-37] Length=1036 Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/1002 (46%), Positives = 670/1002 (67%), Gaps = 23/1002 (2%) Query 1 MRSYHYLPLLGFVAFPTLLANASLDKNLVDSSLYISNSAHHNQGFTVGIKLKDSYFRKDF 60 MRSY ++PLL FP LANASL+KNLVD++LY+S + N+ +T G LK+ YFRK F Sbjct 1 MRSYLFIPLLVSFLFPVALANASLEKNLVDTNLYLSPNTIQNRSYTAGFNLKNDYFRKSF 60 Query 61 NFENPLIYKPNNKTTFGWNYSTLWTQLADGYYDRYNQLLRENNFNWYNNIYYIKDVNLGI 120 NF+N +I +PN F YS W++L + Y D Y Q++R+NNF+WYNNIYY+K++ L I Sbjct 61 NFDNEVIQRPNQNNYFAKTYSNEWSELVNKYSDNYKQIIRDNNFHWYNNIYYLKNIKLKI 120 Query 121 ESSYTSSLAWNKTFSYPGVRNSFKSDIHDLQYFHFHNDSKSGFGP--SRINDPWYPQHDK 178 ESSY + A++ TF YPG+RNS+ SDIH Q F+FH+ + S F P N+ W + Sbjct 121 ESSYIAH-AFSSTFRYPGIRNSWSSDIHSEQRFYFHSQAISNFFPRDGHTNEKWTEVPSR 179 Query 179 YVTLSAGRTAEEAKNAGWSIPYNLETQRLFSPVWNRNKDFKWINVFFGFM-NRSLSVKSP 237 + ++ G + + N W P N L P +K +I F M +L + P Sbjct 180 NIEIT-GTNPDGSWNKSWYKPDNPYFWDLTKP---SHKKAYFIEAKFVHMWGSTLRMIKP 235 Query 238 NINDIVQNAKWIKQGKNGNYFIIFNA----YAITQNDGFFEDRPNNIFIAT-LWNNWWLE 292 D+++N KW+++G NGNY I FNA Y ++ GFF D NNIF+A W W L Sbjct 236 TPEDVIRNIKWLRKGNNGNYVIDFNAPMWYYLGQESRGFFADWKNNIFVAPDFW--WGLA 293 Query 293 STPIYIYRVFWEVELIKTPRVFEQDNVQWNEPVLPKETWVFSID-NKQANAYWSSSNGFK 351 TPI YR +W++EL+K P VFEQ+N QWNEP + +W FSI+ NKQ +A+W S N FK Sbjct 294 MTPIRAYRFWWDLELVKVPPVFEQNNAQWNEPFPGRSSWFFSINSNKQVDAHWMSINEFK 353 Query 352 DKVIKDRKIMEAFTRNRQVTQSILNMGKNVVVKPLTDDEEQSLFSNKWDIFKYTPIIPV- 410 +K+ KDRKI+EAFT NR++TQ+IL +G +VV+P T+D + F++KWDIFK+TPI+P Sbjct 354 EKMKKDRKIIEAFTNNREITQTILRLGNGLVVRPETEDSRREAFNSKWDIFKHTPILPEQ 413 Query 411 NAQRFGVDFYVEQHNADLKPPISFSQLSRLWLSQLQFDPNSVVDTLSKTFNEKDLSQKDQ 470 + FY+ Q+N D PISFS LS+LW+SQL+FD NS+V KT N++ + K + Sbjct 414 EVVHHQISFYLRQNNPDEVLPISFSNLSKLWISQLEFDINSLVSQTEKTLNKETIGTKIK 473 Query 471 LQIMFKKEFTQAIAQISKLNEEIDLATDKATALQKFDSLKSKDSNVNFASLQYLYDLLGM 530 I FK +F AI ++S +N+ ID + DK AL+ F+ + SN + +L YLY+LL M Sbjct 474 PTIKFKDKFINAIKEVSLINQRIDESIDKNEALKSFNISTNNQSNF-YPNLDYLYNLLQM 532 Query 531 EPTNKEHLIFIRNLPEMLQTIFARAKLLAKVKIGDTLQEITLLKNNVNVFDIKTWEKYLT 590 P NKE L FIRNLP M++TIF R+ L KVKIG+++ EITLL+NN N FD+ + E++LT Sbjct 533 SPNNKEELFFIRNLPRMVKTIFDRSTLTVKVKIGNSVNEITLLRNNKNYFDLSSIEEFLT 592 Query 591 PQQHASNEYTINFLSLDFIVDGYESENLHFQVVDQLFGAVKNLPTINKIPEGYQYKFKYR 650 +Q A NE I FL+L+F VDGYESEN+ V+ LF ++K L TI + +G++YKFKYR Sbjct 593 EKQKADNEMNIEFLALNFFVDGYESENISNYSVEPLFDSIKKLSTIKRTKDGFEYKFKYR 652 Query 651 SNFSNQQFKEKDFSVPLHKAIKSFSVGELKQRMEKLNDFEKQQIVFVIKNSFAGVDKTV- 709 +F+ Q++ KDF +PL+K +++F+V ELK+R EK ND+EK+Q+ F+IKNSF DK + Sbjct 653 KDFNEQRWIAKDFRIPLNKNVQNFNVAELKKRNEKFNDYEKRQMAFIIKNSFKSKDKNID 712 Query 710 LDVDANSLTFVEDPRQYKLDLGNMNENKGFFYVLADIHNSNELFKLGSTIDPEIIKGQIY 769 LD+++NSLTFV++P++Y L NE KG FYVLA+I+NSNELFK GS D EIIK ++Y Sbjct 713 LDINSNSLTFVDNPKKYFKHLEPTNEKKGIFYVLAEINNSNELFKYGSESDSEIIKDKMY 772 Query 770 FVKQNQIKPNTRTYLFKINTRKLLLDKQKLWFKPHLETQTVSFMFDEFEIGKLDIETSNI 829 F+ QNQ P RTYLFK +T KL +DK L FK LE V D +I +LD+++S+ Sbjct 773 FLSQNQKNPKLRTYLFKFHTNKLFVDKNDLGFK--LEKDKVFLSVDNLKIAELDLKSSSF 830 Query 830 QLIDDYEFEFQSDFSLQDEQVLLEKLNIVLSQMNLHVETKNARLNPVNKMAYLTVLKNNQ 889 + ++DY+ +F FSL DEQ+L++KLNI LS+ L TKN R N NK + +++N Sbjct 831 KFLEDYQLDFHEPFSLNDEQLLVDKLNITLSEKRLQT-TKNVRFNLKNKFINIHLVENKN 889 Query 890 KFNLEFHVDRYTSQLSIQAMLGSQRLFAINYDLKLSQNKQMLYLINKDGLEKSVWFNIKN 949 +FNL F VD + +L I+ + ++F+I+YDLK++ N Q L +++ +G + S+WF+I + Sbjct 890 QFNLVFDVDVRSKKLFIKGVNNDNQVFSISYDLKITNN-QTLLIVDANGFDNSIWFDITS 948 Query 950 DSQTKLAQQLARFLKENNFQFRQKPVFDFHTQNKAFALEKLD 991 ++QT+L + L+ +LK+NN QF++ P F+ +Q+K++ ++KL+ Sbjct 949 ENQTQLFKALSFYLKQNNLQFKRVPDFNLKSQDKSYEVDKLE 990 >gi|12045276|ref|NP_073087.1| hypothetical protein MG415 [Mycoplasma genitalium G-37] Length=272 Score = 113 bits (282), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 126/230 (55%), Gaps = 2/230 (1%) Query 768 IYFVKQNQIKPNTRTYLFKINTRKLLLDKQKLWFKPHLETQTVSFMFDEFEIGKLDIETS 827 +YF++QN+ P RTYLF++ T+KL+L+ +WFK + V + + EI + + + + Sbjct 1 MYFLEQNKNFPAIRTYLFQMRTKKLVLNVNDIWFKSSGDKLRV--IVNNVEIDEFNPKEN 58 Query 828 NIQLIDDYEFEFQSDFSLQDEQVLLEKLNIVLSQMNLHVETKNARLNPVNKMAYLTVLKN 887 N + YE FSL ++++L++KLN+ LS+MNL ++ K + L+ K LT LK Sbjct 59 NTSFFESYEVHINDYFSLANKELLIKKLNLALSEMNLLIDKKKSSLDLFPKEIKLTTLKI 118 Query 888 NQKFNLEFHVDRYTSQLSIQAMLGSQRLFAINYDLKLSQNKQMLYLINKDGLEKSVWFNI 947 N + +VD +QL+I+ + RL ++ YD+ + ++ + L K +WF++ Sbjct 119 NSSLHFYLNVDAIKNQLNIEVNISKNRLTSLVYDIAIKNENELQIRTTNNYLNKYIWFDL 178 Query 948 KNDSQTKLAQQLARFLKENNFQFRQKPVFDFHTQNKAFALEKLDNKDDTD 997 + KL +L FL FQF+++P F + +F ++K+ + D Sbjct 179 DKKNNQKLKNELKLFLSLKKFQFKKEPNFSLKKNSYSFQIDKIIQSNSED 228 Lambda K H a alpha 0.319 0.135 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 126402174 Query= gi|13508352|ref|NP_110302.1| hypothetical protein MPN613 [Mycoplasma pneumoniae M129] Length=344 Score E Sequences producing significant alignments: (Bits) Value gi|12045276|ref|NP_073087.1| hypothetical protein MG415 [Mycoplas... 209 8e-68 gi|12045275|ref|NP_073086.1| hypothetical protein MG414 [Mycoplas... 140 1e-38 >gi|12045276|ref|NP_073087.1| hypothetical protein MG415 [Mycoplasma genitalium G-37] Length=272 Score = 209 bits (531), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 113/270 (42%), Positives = 173/270 (64%), Gaps = 2/270 (1%) Query 69 MYFLKKETKIPTIRTYLFQMRTHKIALNANDVWFQANNDKVKVIVDGIELDQFDPKLPNV 128 MYFL++ P IRTYLFQMRT K+ LN ND+WF+++ DK++VIV+ +E+D+F+PK N Sbjct 1 MYFLEQNKNFPAIRTYLFQMRTKKLVLNVNDIWFKSSGDKLRVIVNNVEIDEFNPKENNT 60 Query 129 AFFNDYQVDLVSTLTLADKQLLIRRLNLALVGMNLMVDEQATNIETFPKQIRLTTKSIDQ 188 +FF Y+V + +LA+K+LLI++LNLAL MNL++D++ ++++ FPK+I+LTT I+ Sbjct 61 SFFESYEVHINDYFSLANKELLIKKLNLALSEMNLLIDKKKSSLDLFPKEIKLTTLKINS 120 Query 189 SFDFDVEFNPKASELNVIVKVDEQPLFKLDYELVIKNSNTLQLVNRNKHLGMYIWSVADQ 248 S F + + ++LN+ V + + L L Y++ IKN N LQ+ N +L YIW D+ Sbjct 121 SLHFYLNVDAIKNQLNIEVNISKNRLTSLVYDIAIKNENELQIRTTNNYLNKYIWFDLDK 180 Query 249 RYQAKLLDTLQLFLQSKQMYLKEKIPLKLQDNTATFKIAKQAQPNNGENKNTNFIGYLVI 308 + KL + L+LFL K+ K++ L+ N+ +F+I K Q N E+K T+ I YL+I Sbjct 181 KNNQKLKNELKLFLSLKKFQFKKEPNFSLKKNSYSFQIDKIIQS-NSEDKKTDIIVYLII 239 Query 309 AASSLFLVVVAFSFYFYKRKKNLKSHKQKA 338 S L L + F YF+K K K K K Sbjct 240 GFSVLVLFITVF-IYFHKWNKKQKMIKNKT 268 >gi|12045275|ref|NP_073086.1| hypothetical protein MG414 [Mycoplasma genitalium G-37] Length=1036 Score = 140 bits (354), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/316 (32%), Positives = 165/316 (52%), Gaps = 15/316 (5%) Query 11 LTVALNSIKLVKNPEELIPGLIPTNPKTGIFYIAAEITNSNNFFKWGTDSNREIIKGQMY 70 L + NS+ V NP++ L PTN K GIFY+ AEI NSN FK+G++S+ EIIK +MY Sbjct 713 LDINSNSLTFVDNPKKYFKHLEPTNEKKGIFYVLAEINNSNELFKYGSESDSEIIKDKMY 772 Query 71 FLKKETKIPTIRTYLFQMRTHKIALNANDVWFQANNDKVKVIVDGIELDQFDPKLPNVAF 130 FL + K P +RTYLF+ T+K+ ++ ND+ F+ DKV + VD +++ + D K + F Sbjct 773 FLSQNQKNPKLRTYLFKFHTNKLFVDKNDLGFKLEKDKVFLSVDNLKIAELDLKSSSFKF 832 Query 131 FNDYQVDLVSTLTLADKQLLIRRLNLALVGMNLMVDEQAT-NIETFPKQIRLTTKSIDQS 189 DYQ+D +L D+QLL+ +LN+ L L + N++ I L + Sbjct 833 LEDYQLDFHEPFSLNDEQLLVDKLNITLSEKRLQTTKNVRFNLKNKFINIHLVENKNQFN 892 Query 190 FDFDVEFNPKASELNVIVKVDEQPLFKLDYELVIKNSNTLQLVNRNKHLGMYIWSVADQR 249 FDV+ ++ +L + ++ +F + Y+L I N+ TL +V+ N IW Sbjct 893 LVFDVDV--RSKKLFIKGVNNDNQVFSISYDLKITNNQTLLIVDANG-FDNSIWFDITSE 949 Query 250 YQAKLLDTLQLFLQSKQMYLKEKIPLKLQDNTATFKIAKQAQPNNGENKNTN-------- 301 Q +L L +L+ + K L+ ++++ K + N + ++TN Sbjct 950 NQTQLFKALSFYLKQNNLQFKRVPDFNLKSQDKSYEVDK-LEKNEIKKQDTNVELILWVI 1008 Query 302 --FIGYLVIAASSLFL 315 I L+I+++ LFL Sbjct 1009 FGIIISLMISSAVLFL 1024 Lambda K H a alpha 0.320 0.135 0.381 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 38647245 Query= gi|13508353|ref|NP_110303.1| hypothetical protein MPN614 [Mycoplasma pneumoniae M129] Length=334 Score E Sequences producing significant alignments: (Bits) Value gi|12045275|ref|NP_073086.1| hypothetical protein MG414 [Mycoplas... 187 7e-55 >gi|12045275|ref|NP_073086.1| hypothetical protein MG414 [Mycoplasma genitalium G-37] Length=1036 Score = 187 bits (475), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 111/310 (36%), Positives = 183/310 (59%), Gaps = 14/310 (5%) Query 12 FSLTPLLLSSATINSHVIDSSFYLTKNLVESENQSPIQFNQLSRIILVQLEFDPDSIVDN 71 F TP+L ++ + SFYL +N + PI F+ LS++ + QLEFD +S+V Sbjct 404 FKHTPILPEQEVVHHQI---SFYLRQN--NPDEVLPISFSNLSKLWISQLEFDINSLVSQ 458 Query 72 TSITFNNRTLGQKALLKLRFKREFTLAIQEITELNQLVDQAIDKNTVLQNFLTLKNVERK 131 T T N T+G K ++FK +F AI+E++ +NQ +D++IDKN L++F N+ Sbjct 459 TEKTLNKETIGTKIKPTIKFKDKFINAIKEVSLINQRIDESIDKNEALKSF----NISTN 514 Query 132 QQ---WERLSYLYKLLNFDFRDPQELSLVRDLPRLLKTIFESASINFQVRMGGQLRKITL 188 Q + L YLY LL + +EL +R+LPR++KTIF+ +++ +V++G + +ITL Sbjct 515 NQSNFYPNLDYLYNLLQMSPNNKEELFFIRNLPRMVKTIFDRSTLTVKVKIGNSVNEITL 574 Query 189 VKNNNNVFNLGQFEQFLNLDQISINLFEVEFLSFDFISDQYPSWTAKNLPVFSLFESAKN 248 ++NN N F+L E+FL Q + N +EFL+ +F D Y S N V LF+S K Sbjct 575 LRNNKNYFDLSSIEEFLTEKQKADNEMNIEFLALNFFVDGYESENISNYSVEPLFDSIKK 634 Query 249 KPTIQKTNQGIQYRLRFRSNYNEQYLNKYRFSIPVVNNGKEFSVLDIQ--DKELTEEQKN 306 TI++T G +Y+ ++R ++NEQ F IP+ N + F+V +++ +++ + +K Sbjct 635 LSTIKRTKDGFEYKFKYRKDFNEQRWIAKDFRIPLNKNVQNFNVAELKKRNEKFNDYEKR 694 Query 307 QIAFVIKNGF 316 Q+AF+IKN F Sbjct 695 QMAFIIKNSF 704 Lambda K H a alpha 0.322 0.137 0.393 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37231595 Query= gi|13508354|ref|NP_110304.1| hypothetical protein MPN615 [Mycoplasma pneumoniae M129] Length=249 ***** No hits found ***** Lambda K H a alpha 0.322 0.139 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 25886077 Query= gi|13508355|ref|NP_110305.1| ribosomal protein S9 [Mycoplasma pneumoniae M129] Length=132 Score E Sequences producing significant alignments: (Bits) Value gi|12045277|ref|NP_073088.1| ribosomal protein S9 (rpS9) [Mycopla... 209 5e-73 >gi|12045277|ref|NP_073088.1| ribosomal protein S9 (rpS9) [Mycoplasma genitalium G-37] Length=132 Score = 209 bits (531), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 111/132 (84%), Positives = 126/132 (95%), Gaps = 0/132 (0%) Query 1 MEKQSYYGLGRRKSSSAKVYLTPTQDKGKITVNRRDPSEYFPNKLVIQDMEQPLDLTDLK 60 M+K+S+YGLGRRKSS+AKVYL ++DKGKIT+N R+PS+YFPNKLVIQDMEQPL+LT LK Sbjct 1 MDKKSFYGLGRRKSSTAKVYLYQSKDKGKITINHRNPSDYFPNKLVIQDMEQPLELTKLK 60 Query 61 KNFDINVVVKGGGFTGQAGAIRLGIVRALLQFNPELKKILKSKKLTTRDKRVKERKKFGL 120 NFDINVVVKGGGFTGQAGAIRLGIVRAL++FNP+LKK+LK+KKLTTRDKR KERKKFGL Sbjct 61 DNFDINVVVKGGGFTGQAGAIRLGIVRALIKFNPDLKKLLKTKKLTTRDKRAKERKKFGL 120 Query 121 YGARRAPQFTKR 132 YGARRAPQFTKR Sbjct 121 YGARRAPQFTKR 132 Lambda K H a alpha 0.318 0.137 0.382 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10214470 Query= gi|13508356|ref|NP_110306.1| ribosomal protein L13 [Mycoplasma pneumoniae M129] Length=146 Score E Sequences producing significant alignments: (Bits) Value gi|12045278|ref|NP_073089.1| ribosomal protein L13 (rpL13) [Mycop... 267 1e-95 >gi|12045278|ref|NP_073089.1| ribosomal protein L13 (rpL13) [Mycoplasma genitalium G-37] Length=146 Score = 267 bits (682), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 126/146 (86%), Positives = 137/146 (94%), Gaps = 0/146 (0%) Query 1 MQKTSMLTKEQANKRRQWYIVDAAGLVLGKLAVKAADLIRGKNKVDFTPNQDCGDYLIII 60 MQKTSMLTKE+A K R+WY+VDA+GLVLGKLAVKAA+LIRGKNK +FTPNQDCGD+LIII Sbjct 1 MQKTSMLTKEEAIKNRKWYLVDASGLVLGKLAVKAANLIRGKNKANFTPNQDCGDHLIII 60 Query 61 NSDQVVLTGNKKENEFWYHHSQYIGGIKKVSGRDMLKKQSDKLVYNAVKGMLPDNRLSRR 120 NSDQVVLTGNKK+NEFWYHHSQY+GGIKK SGRDM+ K SDKLV+NAVKGMLPDNRLSRR Sbjct 61 NSDQVVLTGNKKDNEFWYHHSQYMGGIKKTSGRDMINKNSDKLVFNAVKGMLPDNRLSRR 120 Query 121 WITKVHVFKGDKHNMEAQKPTTLNWS 146 ITKVHVFK DKHNMEAQKPT LNWS Sbjct 121 LITKVHVFKNDKHNMEAQKPTLLNWS 146 Lambda K H a alpha 0.317 0.133 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12071271 Query= gi|13508357|ref|NP_110307.1| gamma-like [Mycoplasma pneumoniae M129] Length=681 Score E Sequences producing significant alignments: (Bits) Value gi|12045280|ref|NP_073091.1| DNA polymerase III, subunit gamma an... 360 8e-123 gi|12045279|ref|NP_073090.1| DNA polymerase III, subunit gamma an... 159 3e-45 >gi|12045280|ref|NP_073091.1| DNA polymerase III, subunit gamma and tau [Mycoplasma genitalium G-37] Length=260 Score = 360 bits (925), Expect = 8e-123, Method: Compositional matrix adjust. Identities = 171/224 (76%), Positives = 199/224 (89%), Gaps = 1/224 (0%) Query 1 MRKVLYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKA 60 M +V YQKYRP F T+GQ+SI++I+VNAI +D+LP+GYIF+GERGTGKTTFAKIIAKA Sbjct 1 MHQVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKA 60 Query 61 INCLNWNG-DVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKK 119 INCLNW+ DVCN C+ C++IN+NSAID+ EIDAASKNGINDIREL ENVFN PF FKKK Sbjct 61 INCLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKK 120 Query 120 VYILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITND 179 VYILDEAHMLT QSW GLLKTLEE+P YVLFIF TTEFNKIP+TILSRCQSFFFK+IT+D Sbjct 121 VYILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSD 180 Query 180 LIQQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQIS 223 LI +RL ++A KE IKI DAL+K+ADL+QGSLRDGLSLLDQ++ Sbjct 181 LILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQLA 224 >gi|12045279|ref|NP_073090.1| DNA polymerase III, subunit gamma and tau [Mycoplasma genitalium G-37] Length=331 Score = 159 bits (402), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 118/179 (66%), Gaps = 0/179 (0%) Query 503 NNPVSIPIKLNRAVIAVSVYGHNDPKLVAHFQQLLDSFKREFTQAEKTKDSSYLKQFSDK 562 NN KLN A IA+++ ND K + HFQ LL F+ +F +K + SY F DK Sbjct 153 NNKFLDTSKLNLANIALAINAFNDNKWINHFQNLLSVFQTKFNDKDKQNNLSYFNNFIDK 212 Query 563 FTASDLSKVIKVLAASPFGLVLIFEDKEIATRLWKEALTEATAQATLLEIFQQNLFLSSF 622 ++A D+ K K++ AS FG+V++FED++IA RLWKEA+ E QAT+ +IF QNLFL+SF Sbjct 213 YSARDIVKATKIVKASSFGIVILFEDQKIAMRLWKEAIEEGNVQATIFQIFNQNLFLASF 272 Query 623 TLSEYETKVLAKVEQLTHKPQVLQLQQLEQLSSTVVKKAQKTAAQEIADTFFKGLYEEK 681 + +Y+T + + + ++ +VL L QLE L+ +K+ +++ +Q++ D +FKGL+EEK Sbjct 273 SEHQYKTTITEETKNQKYQTEVLNLTQLENLAKPFLKEKKRSLSQKMVDKYFKGLFEEK 331 Score = 110 bits (275), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 49/95 (52%), Positives = 69/95 (73%), Gaps = 0/95 (0%) Query 266 LIDNFESQGINFVHFLRELFALTVDLYGYVKTGQIAVVKPSDQTMAAKLRFHPKQYALLV 325 ++D+FES G+NF +FLRELFALTV+LY Y K I V+ +++TM L F + YA L+ Sbjct 1 MLDDFESNGLNFTYFLRELFALTVNLYAYAKLKNINVLDSTEKTMIETLNFEKQHYAFLI 60 Query 326 QAIEANTGYGPSQLSLSDQIKAIVIHYNNAVSKEP 360 +AIE NT +G SQL+L D++KAIVI YN +++P Sbjct 61 KAIEENTNFGLSQLTLIDRLKAIVISYNEFFNQKP 95 Lambda K H a alpha 0.317 0.132 0.367 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 83751244 Query= gi|13508358|ref|NP_110308.1| excinuclease ABC subunit A [Mycoplasma pneumoniae M129] Length=948 Score E Sequences producing significant alignments: (Bits) Value gi|12045281|ref|NP_073092.1| excinuclease ABC subunit A (uvrA) [M... 1704 0.0 >gi|12045281|ref|NP_073092.1| excinuclease ABC subunit A (uvrA) [Mycoplasma genitalium G-37] Length=954 Score = 1704 bits (4413), Expect = 0.0, Method: Compositional matrix adjust. Identities = 807/948 (85%), Positives = 896/948 (95%), Gaps = 0/948 (0%) Query 1 MKPELKTNDFIRVKGARENNLKNVNIDIPKNQFVVITGLSGSGKSSLAFNTIYAEGRRRY 60 +KPE K NDFIRVKGARENNLKN+NIDIPKNQFVVITGLSGSGKSSLAFNTIYAEGRRRY Sbjct 3 LKPEWKNNDFIRVKGARENNLKNINIDIPKNQFVVITGLSGSGKSSLAFNTIYAEGRRRY 62 Query 61 LESLSSYARQFLGNSDKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLWA 120 LESLSSYARQFLGNSDKPDVD IEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLWA Sbjct 63 LESLSSYARQFLGNSDKPDVDLIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLWA 122 Query 121 RIGIPFCPNGHGAIQTQTVNQIANQIFNLPVKSRIQILAPTIKNQRGTFANEFAKYQQLG 180 RIG P+CPNGHG+IQTQT+NQIANQIF+LP KS++Q+LAPT+KNQRG F NEF KY+QLG Sbjct 123 RIGTPYCPNGHGSIQTQTINQIANQIFDLPNKSKVQLLAPTVKNQRGIFTNEFIKYKQLG 182 Query 181 FLRVWVDGQVYTLDEEIKLDKNTKHNLSVVVDRIVINQDKQTLGRIVDAIEGVIKLTEGR 240 FLRV VDGQ+YTLD+EIKLDKNTKHN+SVV+DRI+IN+D QT RIVD+IE + +LT G+ Sbjct 183 FLRVLVDGQIYTLDDEIKLDKNTKHNISVVIDRIIINKDNQTYSRIVDSIETIDRLTNGK 242 Query 241 IEVLLEDGKILSFNKNHGCDQCGFSISELEPRLFSFNSPLGSCEYCKGLGFSYEPDVEKI 300 IEVL EDG IL+F+KNHGCD+CGFSISELEPRLFSFNSPLGSC YCKGLGFSYEPDV+KI Sbjct 243 IEVLKEDGTILNFSKNHGCDKCGFSISELEPRLFSFNSPLGSCSYCKGLGFSYEPDVDKI 302 Query 301 IPNPLLSINEGGIDIFKNIVHGTSLDWQRFLSLINHYQIPLDQPLGQMDTDLVRMILEGS 360 I + LSIN+G IDIFKNIVHGTSLDWQRFLSL+NHY+IPLD+P+ Q+D + +ILEGS Sbjct 303 IADSKLSINQGAIDIFKNIVHGTSLDWQRFLSLVNHYKIPLDKPIEQLDKSQLNLILEGS 362 Query 361 DEPIEIKTVSNSGAKNVRFEHYEGVAHLIKRRHLETSSQASREWYSAYMSEITCKKCQGK 420 DEPIEIKT+SNSGAKN+RFEHYEG+A+LIKRRHLET+SQ SREWYSAYMSEITCKKC GK Sbjct 363 DEPIEIKTISNSGAKNIRFEHYEGIANLIKRRHLETNSQVSREWYSAYMSEITCKKCHGK 422 Query 421 KLTTNSLSVKLGGLDIISFTELSIDKAIEFLLQIELNQEQKKIGELALKEIINRLSFLKN 480 KL ++LSVKLGG+DIISFTELSIDK+I+FLL++ELN EQKKIGELALKEIINRLSFLKN Sbjct 423 KLIKDALSVKLGGIDIISFTELSIDKSIDFLLKLELNDEQKKIGELALKEIINRLSFLKN 482 Query 481 VGLEYLNLARRASTLSGGEAQRIRLATQIGSQLTGVLYVLDEPSIGLHQKDNDRLINTMM 540 VGL+YLNLARRASTLSGGEAQRIRLATQIGSQLTGVLYV+DEPSIGLHQKDN RLI TMM Sbjct 483 VGLDYLNLARRASTLSGGEAQRIRLATQIGSQLTGVLYVMDEPSIGLHQKDNMRLIKTMM 542 Query 541 VMRDLGNTLLVVEHDSETMLAADYLIDIGPKAGNQGGEVVAAGTPLEVMENPDSLTGQYL 600 VMRDLGNTLLVVEHDSETMLAADYLIDIGPKAGN+GGE+VA GTPL+VMEN +S+TGQYL Sbjct 543 VMRDLGNTLLVVEHDSETMLAADYLIDIGPKAGNEGGELVACGTPLQVMENSNSITGQYL 602 Query 601 SGKKQIEVPKTRHAGNGRTLTLKGAKGNNLKNINVTIPLNKLVLVTGVSGSGKSTLINQT 660 SGKKQI +PK RH+GNG+T+ +KGAK NNLKNINVTIPLNKLVL+TGVSGSGKS+LINQT Sbjct 603 SGKKQISIPKNRHSGNGKTIIIKGAKVNNLKNINVTIPLNKLVLITGVSGSGKSSLINQT 662 Query 661 LVPILERLVNYKNVKPAPYKEIIGVNHIDKVVVVSQDPIGRTPRSNPATYVSVFDDIREL 720 LVP LER++ K VK YKEIIG N+IDK++VVSQDPIGRTPRSNPATY+SVFDDIR+L Sbjct 663 LVPALERILYRKGVKKDTYKEIIGANNIDKIIVVSQDPIGRTPRSNPATYISVFDDIRDL 722 Query 721 FANTKEAKARGYTNSRFSFNVAGGRCDKCFGDGVIRIEMHFLPDVYVTCEMCDGKKYNPQ 780 FANTKEAKARGYTNSRFSFNV GGRCDKCFGDGVIRIEMHFLPDVYV CE+C+GKKYN Q Sbjct 723 FANTKEAKARGYTNSRFSFNVPGGRCDKCFGDGVIRIEMHFLPDVYVKCEVCNGKKYNSQ 782 Query 781 TLEVKYLGKSIFDVLQMSCQEAYDFFKAIPNIARKLKLLCDVGLEYLQLGLNVTFLSGGE 840 TLE+KYLGKSIFDVLQMSC+EAY+FFKAIPNI+RKL+LLCDVGLEYLQLG+NVTFLSGGE Sbjct 783 TLEIKYLGKSIFDVLQMSCKEAYEFFKAIPNISRKLRLLCDVGLEYLQLGINVTFLSGGE 842 Query 841 AQRIKLAKFLQKKATGKTLYVLDEPSTGLHIEDINKLLTVIQRIIKNGDSVIIIEHNLDI 900 AQRIKL+KFLQKK+TGKTL+VLDEPSTGLH+EDINKLLT+IQRIIKNGD+V++IEHNLDI Sbjct 843 AQRIKLSKFLQKKSTGKTLFVLDEPSTGLHLEDINKLLTIIQRIIKNGDTVVVIEHNLDI 902 Query 901 IKMADYIIDLGPEGGEKGGQIIAQGTPEQLLNQVDKSYTAQYLAKILK 948 IK+ADYIIDLGPEGG+ GGQI+AQGTPEQL+NQV+KSYTAQYL+KILK Sbjct 903 IKVADYIIDLGPEGGDNGGQIVAQGTPEQLINQVNKSYTAQYLSKILK 950 Lambda K H a alpha 0.318 0.137 0.391 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 119655217 Query= gi|13508359|ref|NP_110309.1| hypothetical protein MPN620 [Mycoplasma pneumoniae M129] Length=839 Score E Sequences producing significant alignments: (Bits) Value gi|12045282|ref|NP_073093.1| hypothetical protein MG422 [Mycoplas... 765 0.0 >gi|12045282|ref|NP_073093.1| hypothetical protein MG422 [Mycoplasma genitalium G-37] Length=835 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/838 (50%), Positives = 587/838 (70%), Gaps = 4/838 (0%) Query 1 MLKQISTTTKKEPWVNLSLLMVHNSFLDINYFWTTNLSIHKYGNYLVNNLNKAQWNTLSS 60 MLK+IS E WV+LSLLM+ SFLD NYF LS+ KYGNYL++NLN+AQW TLS Sbjct 1 MLKKISLFDNLEQWVDLSLLMIRTSFLDANYFGVAKLSLFKYGNYLIDNLNQAQWKTLSQ 60 Query 61 VLQLKKAPHSGFLWTDQHNYIPLHRVKTNLCEKIELAAVQQSHPFHQTIHDFLRQSTCPK 120 VLQL K P+SGFL + H Y+PL ++K NLCE+I+L + F + FL+Q K Sbjct 61 VLQLNKQPYSGFLLVNNHQYLPLQKIKFNLCEEIDLRN-KNKWLFPNSFSIFLKQDLSYK 119 Query 121 KRQRLIEKLQIPNELRWFLGFNALKKLSQFVVFELDNTNKLTSETLSQFFTTKFVNKVYF 180 K Q + IP +L+WFLGFNAL L +F + +++N N+ TS+ ++QFFT+KF+N +YF Sbjct 120 KDQNYFNLVNIPKQLKWFLGFNALNDLFRFSILKIENVNQKTSKVINQFFTSKFINSIYF 179 Query 181 NQIQFEYNNFVGLLEDHERDLVEFSTHFFNSFFEQPDHLTKSFFEQYYALTRQRERLLHN 240 Q+ FEYNNF+ L+E +ER+LV+F+ FFN F + + KSFFE+YYAL Q+ L + Sbjct 180 EQVDFEYNNFLTLIEKNERELVDFNCMFFNQLFTFNNKVIKSFFERYYALNEQKNNLKNK 239 Query 241 LKVQSYETKHGVNTYFENLQITRAQQQANQLKRAFKKQQRNSVQLINRFMSSLWWSQTKI 300 LK+ +YE K N+YFE LQI RA+Q+ K+ F KQ +N++QLIN F SL +S KI Sbjct 240 LKIAAYEAKSRDNSYFEKLQIERAKQRLFDAKKTFSKQHKNALQLINSFTFSLIFSGWKI 299 Query 301 KFKSIFNFYKTRILEKRIVAKRIQIKIWLLKELKQMRLLNPDLLVSTIAESERLVEQLMS 360 K++S FNFY+ RILEK+IV+KRI+ +I LLKE+K+M LL+P LLV TI ES LV ++ + Sbjct 300 KWRSFFNFYRKRILEKKIVSKRIKTRILLLKEIKKMDLLSPKLLVETIDESINLVNKIFA 359 Query 361 NIQRLYQQILQLKPGQSLNWKYQAISFELEKLTKPIVLTHDAVIGFLIKSRLAFLQEYAK 420 NIQ LYQ+I+ LK G +LNWKYQ I+ EL+ ++ +LT V FLIK+RL+F++ + K Sbjct 360 NIQNLYQEIISLKSGPNLNWKYQTINQELKIMSARFILTKKEVHEFLIKARLSFIKNFVK 419 Query 421 GLNRCEQHNKLVNELKQNVLLNQNQYKGEVSQSYSVVNQKAVFKGFIQTVKAALNYTKLK 480 N H KLVNELK+N+LLNQN Y+G+ + S+SV+ QK VFK FI TV+ A+ ++ Sbjct 420 QSNNLYVHEKLVNELKENILLNQNHYRGKHNNSFSVLIQKTVFKQFIDTVQYAIGLISMR 479 Query 481 HTLDPFNLMNIVQERCFEQLLTTYEKLDWTKYELNQLYFVCRALWTNLHKQTQHFFTKYQ 540 +L+ FN +++ +E LL Y+K++W KYELN LYFV +LW +L K+ Q FF KY+ Sbjct 480 KSLETFNFAFQIKQYFYESLLANYQKINWQKYELNNLYFVLISLWNSLSKKFQQFFNKYE 539 Query 541 FITHGVVDFVFNQGRNQTQFASLKANLNRDWNSPKWKLLVNKTVNKYFEANLHHPQAYLL 600 F++ G DF++N+GR++ F+ LK L D NSPKW LV+K +NKY + N P ++LL Sbjct 540 FLSCGSNDFIWNEGRSEPHFSLLKDKLKNDLNSPKWNFLVDKVINKYLDLNFETPVSFLL 599 Query 601 LPNRNATTLTEANTTTINQLNLKTQLKQWRAHYHLLLQDIRLIQWLYKKEIKQKQQQIKA 660 ++T N T N +LK +LK+ + Y LLL+DI L++W+++ E QK Q+IK Sbjct 600 ASRGFSSTTDTTNKETKN--DLKQKLKKCKQKYKLLLKDINLVKWIFRDETNQKLQKIKF 657 Query 661 LLKNYGTLNKLLNTQISKVNNVVRKTFFVDSEECDLNRLQASNKLHFNLLNAMVNVISFC 720 ++K Y LNK L+ ++ K N +++TFF+DSEEC++NRL+ASNKL+ N+LN+ + I+F Sbjct 658 IMKRYCILNKTLHLRLKKTNKKIKRTFFIDSEECNINRLEASNKLYLNVLNSQLKTINFF 717 Query 721 LKKCRQNPKKLNRTANLKMLLDNTFKNGIPSWMIFSDLNKINTKQRFKLYLLFKLLLHPQ 780 L + ++N KKLN N+ +L++ T KNGI SWM+FSDLNKIN + KLYLLFKLLL+P+ Sbjct 718 L-RSQKNLKKLNFINNINLLINQTKKNGISSWMLFSDLNKINKNESLKLYLLFKLLLNPK 776 Query 781 LVLVDSFVNFNKHTYNFTRGLLIAHQNQQGIAYLFNDPHNNLVKDFFTQTINFETRAK 838 L++++ +F H YNF RGLLI++QN+QGIA +FNDP+N LVK+F + I+FET K Sbjct 777 LLMINCCNDFTNHAYNFIRGLLISYQNKQGIALIFNDPNNKLVKNFSIKNIDFETGMK 834 Lambda K H a alpha 0.322 0.134 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 105152697 Query= gi|13508360|ref|NP_110310.1| similar to metallo hydrolase [Mycoplasma pneumoniae M129] Length=561 Score E Sequences producing significant alignments: (Bits) Value gi|12045283|ref|NP_073094.1| hypothetical protein MG423 [Mycoplas... 1010 0.0 gi|12044991|ref|NP_072801.1| hypothetical protein MG139 [Mycoplas... 124 8e-32 >gi|12045283|ref|NP_073094.1| hypothetical protein MG423 [Mycoplasma genitalium G-37] Length=561 Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/561 (86%), Positives = 532/561 (95%), Gaps = 0/561 (0%) Query 1 MAKINFFAFGGQDERGKNCFVLEINNDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQA 60 MAKI FFA GGQDERGKNC+VLEI+NDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQA Sbjct 1 MAKIKFFALGGQDERGKNCYVLEIDNDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQA 60 Query 61 RIKGIFIGNPVTENIGSLEFLFHTVGFFPIYTSTIGAVVIKTKIHENKLNIPHDELEIHE 120 R+KGIFIGN +TEN+GSLEFLFHTVGFFPIYTS+IGA +IK+KI+ENKLNI D+LEIHE Sbjct 61 RVKGIFIGNAITENLGSLEFLFHTVGFFPIYTSSIGASIIKSKINENKLNIARDKLEIHE 120 Query 121 LKPLETVKIGHHNITPFKVSSSIPSSFGFALHTDDGYIVYVDDFIVLNDKNIAFENQLNQ 180 LKPLET++I +H+ITPFKVSSS+PSSFGFAL+TD+GYIV++DDFIVLNDKNIAFENQLNQ Sbjct 121 LKPLETIEISNHSITPFKVSSSLPSSFGFALNTDNGYIVFIDDFIVLNDKNIAFENQLNQ 180 Query 181 IIPQVANKTLLLITGVGLVGRNTGFTTPKHKSLEQLNRIIASAKGRVFAACYDSNAYSVM 240 IIP++++ TLLLITGVGLVGRN+GFTTPKHKSLEQLNRII AKGR+F ACYDSNAYSVM Sbjct 181 IIPKLSDNTLLLITGVGLVGRNSGFTTPKHKSLEQLNRIITPAKGRIFVACYDSNAYSVM 240 Query 241 TLAQIARMQNRPFVIYSHSFVHLFNAIVRQKLFNNTHLNTISIEEINNSTNAIVVLTAPP 300 TLAQIARMQNRPF+IYS SFVHLFN IVRQKLFNNTHLNTISIEEINNSTN+IVVLT+PP Sbjct 241 TLAQIARMQNRPFIIYSQSFVHLFNTIVRQKLFNNTHLNTISIEEINNSTNSIVVLTSPP 300 Query 301 DKLYAKLFKIGTNEDERVRYRKTDSFIFMIPRIAGYEELEAQILDDVARNEVSYYNLGRE 360 DKLYAKLFKIG NEDER+RYRK+D+FIFM P++AGYEE+EAQILDD+ARNEVSYYNLGRE Sbjct 301 DKLYAKLFKIGMNEDERIRYRKSDTFIFMTPKVAGYEEIEAQILDDIARNEVSYYNLGRE 360 Query 361 ILSINASDEDMKFLVTSLKPKYIIPTSGLYRDFINFTMVMKQAGVEQSQVLIPFNGEVLA 420 ILSI ASDEDMKFLV+SLKPKYIIPT GLYRDFINFTMV+KQAG EQ+Q+LI FNGEVL Sbjct 361 ILSIQASDEDMKFLVSSLKPKYIIPTGGLYRDFINFTMVLKQAGAEQNQILILFNGEVLT 420 Query 421 INHKQIDNKKRELKLNPKCVDSAGLQEIGASIMFERDQMSEAGVVTIIIYYDSKKSEFLN 480 I +K++D+KK ELKLNPKCVDSAGLQEIGASIMFERDQMSE+GVV IIIY+D KKSEFLN Sbjct 421 IENKKLDSKKNELKLNPKCVDSAGLQEIGASIMFERDQMSESGVVIIIIYFDQKKSEFLN 480 Query 481 EITYSFLGVSLDSNNQVKLKTKMEELIRKQINDIKDFTTIKRRLGKDTSKELKVSIKRAV 540 EITYSFLGVSLD + KLKTKMEELI+KQINDIKDFTTIK+R+GK+ SKELKVSIKRAV Sbjct 481 EITYSFLGVSLDVPEKDKLKTKMEELIKKQINDIKDFTTIKKRIGKEISKELKVSIKRAV 540 Query 541 MNLFTKMTAKAPLILSTIISI 561 MNLFTKMT+KAPLILSTIISI Sbjct 541 MNLFTKMTSKAPLILSTIISI 561 >gi|12044991|ref|NP_072801.1| hypothetical protein MG139 [Mycoplasma genitalium G-37] Length=569 Score = 124 bits (310), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 127/563 (23%), Positives = 256/563 (45%), Gaps = 23/563 (4%) Query 7 FAFGGQDERGKNCFVLEINNDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQARIKGIF 66 +AFGG E GKN + +E ++++ I + G + +LG+ IIP F + ENQ+++K +F Sbjct 19 YAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGINGIIPSFEHLIENQSKVKALF 78 Query 67 IGNPVTENIGSLEFLFHTVGFFPIYTSTIGAVVIKTKIHENKLNIPHDELEIHELKPLET 126 I + ++IG + +L V IY I A +I K++E+K + + + +T Sbjct 79 ITHGHEDHIGGVPYLLKQVDIPVIYAPRIAASLILKKVNEHKDAKLNKIVTFDDFSEFQT 138 Query 127 VKIGHHNITPFKVSSSIPSSFGFALHTDDGYIVYVDDFIVLNDKNIAFENQLNQI--IPQ 184 H I ++V+ SIP +FG + T +G IV D+ + A +++ + + + Sbjct 139 ---KHFKIDFYRVNHSIPDAFGICVQTPNGNIVQSGDYRF----DFAAGSEMLDVHKVVK 191 Query 185 VANKTLLLITGVGLVGRNTGFTTPKHKSLEQLNRIIASAKGRVFAACYDSNAYSVMTLAQ 244 +A + + + GF+ + + +I+ A+GRV + SN + + + Sbjct 192 IAERNVHVFMSESTNAEVPGFSQSEKLIYRNIQKILKEARGRVILTTFASNITRINEIIE 251 Query 245 IARMQNRPFVIYSHSFVHLFNAIVRQKLFNNTHLNTISIEEINN--STNAIVVLTAPPDK 302 IA R + S N + L + + + +I N N +++ T + Sbjct 252 IALNNKRKICLLGKSMDVNVNISRKIGLMAIDSNDIVEVRDIKNYPDRNILILCTGSQGE 311 Query 303 LYAKLFKIGTNEDERVRYRKTDSFIFMIPRIAGYEELEAQILDDVARNEVSYYNLGREI- 361 A L + + V + TD+ I I G +L+++++ V+ Y ++ Sbjct 312 EAAALNTMARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKFGVAIYENSSQLK 371 Query 362 --LSINASDEDMKFLVTSLKPKYIIPTSGLYRDFINFTMVMKQAGVEQSQVLIPFNGEVL 419 S +A+ ++++ ++ + PKY+IP G ++ + + G++ V + NG+V+ Sbjct 372 LHASGHATQQELQLMLNLMFPKYLIPIHGEFKMMRTIKNIANECGIKSEDVALLSNGQVM 431 Query 420 AINHKQIDNKKRELKLNPKCVDSAGLQEIGASIMFERDQMSEAGVVTIIIYYDSKKSEFL 479 + +++ + +P ++S A I+ +R +S G+ +I+ +D K + + Sbjct 432 YLIDEELYYSNEIINADPIYIESHNSSPDLARIIKQRQILSRDGMFAVIVVFD-KNNNII 490 Query 480 NEITYSFLGV--SLDSNNQVKLKTKMEELIRKQINDIKDFTTIKRRLGKDTSKELKVSIK 537 T G +LDSN L TK+ +++ + + + K + +KELK K Sbjct 491 GIPTLITRGCFFALDSN---PLMTKIAHSVKRTLESV--IQSKKFNSHEQLTKELKRVCK 545 Query 538 RAVMNLFTKMTAKAPLILSTIIS 560 V K + PLI ST++S Sbjct 546 ETVSYFIWKNKNRNPLI-STVLS 567 Lambda K H a alpha 0.321 0.137 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 67859694 Query= gi|13508361|ref|NP_110311.1| ribosomal protein S15 [Mycoplasma pneumoniae M129] Length=86 Score E Sequences producing significant alignments: (Bits) Value gi|12045284|ref|NP_073095.1| ribosomal protein S15 (rps15) [Mycop... 131 9e-44 >gi|12045284|ref|NP_073095.1| ribosomal protein S15 (rps15) [Mycoplasma genitalium G-37] Length=86 Score = 131 bits (330), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 65/86 (76%), Positives = 75/86 (87%), Gaps = 0/86 (0%) Query 1 MQIDKNGIIKSAQLHDKDVGSIQVQVSLLTSQIKQLTDHLLANKKDFISKRGLYAKVSKR 60 M+IDK IIK+ QLH DVGS+QVQ+S+LT QIK+LTDHLLANKKDFISKRGLY KVSKR Sbjct 1 MKIDKEQIIKAHQLHKNDVGSVQVQISILTDQIKKLTDHLLANKKDFISKRGLYTKVSKR 60 Query 61 KRLLKYLKHNDLEAYRNLVKTLNLRG 86 KRLLKYLK ++E YR+L+K LNLRG Sbjct 61 KRLLKYLKERNIETYRDLIKNLNLRG 86 Lambda K H a alpha 0.318 0.134 0.357 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4464750 Query= gi|13508362|ref|NP_110312.1| similar to ATP-dependent RNA helicase deaD [Mycoplasma pneumoniae M129] Length=450 Score E Sequences producing significant alignments: (Bits) Value gi|12045285|ref|NP_073096.1| ATP-dependent RNA helicase (deaD) [M... 640 0.0 gi|12045164|ref|NP_072975.1| ATP-dependent RNA helicase, putative... 86.7 3e-20 >gi|12045285|ref|NP_073096.1| ATP-dependent RNA helicase (deaD) [Mycoplasma genitalium G-37] Length=449 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/450 (66%), Positives = 368/450 (82%), Gaps = 1/450 (0%) Query 1 MDSTFNELGVSPALIATLKDNNINQPTTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIP 60 MDSTF+ELG+S LI TL +IN+PT IQQ++IPQFL +NLIVHSPTGTGKTA F IP Sbjct 1 MDSTFHELGISQTLIETLNALHINKPTKIQQISIPQFLSEKNLIVHSPTGTGKTAAFAIP 60 Query 61 VIETLLKKPSKGTTQTLVVAPTRELAEQIKTTFINFAKHTHLKVVSLIGGIPIWQQLKQL 120 +IE LLK+ + TLV+APTREL EQIKTTF N AK+ L+++SLIGG+P W+Q+K++ Sbjct 61 IIEKLLKE-DQTAKPTLVIAPTRELVEQIKTTFSNIAKNKKLRIISLIGGVPAWKQIKKI 119 Query 121 ENQPEIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLDRGFKRKLFDLLSRIEKFEQ 180 + P+I+VGTMGR+MDLLER I F LEHLIIDEVDLMLDRGFK+++F+LL +I F+Q Sbjct 120 KTNPQIIVGTMGRIMDLLERKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNLLEQINSFKQ 179 Query 181 IAVYSASYNEETIETAKQITKNGIFLAAPELKQNAPEPDNKLIDQFVCYLFSNRKKQALY 240 IAVYSASYN+E I AKQIT NGIF+ +PE ++A ++KLI QFVCYLFS++KKQALY Sbjct 180 IAVYSASYNQEAINIAKQITNNGIFIGSPEFNKDANTNNDKLIKQFVCYLFSDQKKQALY 239 Query 241 SLVSQTRAKSIIVFCDTKKLVDELCIFLRKNDVKTYPLHGDKAQFIRERNLKLFANTTAP 300 SL+ + KSIIVFCDTKKLVD+L +FLRKN+++T+ LHGDK QFIRERNLK+FANT P Sbjct 240 SLIKTAQVKSIIVFCDTKKLVDDLHVFLRKNELRTFALHGDKKQFIRERNLKIFANTKQP 299 Query 301 IVLVTTDLIGRGIHVEGVDMVVNYSACVNFETYLHRMGRTGRNNHKGSCITFCTSHEKQA 360 +LVTTDLIGRGIHVE +DMV+NYSAC+N E Y++RMGRTGRNNHKG+C+TFCTS EK+ Sbjct 300 TILVTTDLIGRGIHVEAIDMVINYSACLNLEAYINRMGRTGRNNHKGTCVTFCTSQEKKV 359 Query 361 FLKLLEQVNDKRISPLRPMRLRLIPLKCKTQPKKGKLSLQSVQKIYVNPRSNGTFKRVPL 420 FLK++E++ D RI+ + M ++LIPLK K + KKG +SL VQKIY N + KRVPL Sbjct 360 FLKMVEKITDNRIAECKQMEIKLIPLKNKAKTKKGGISLDCVQKIYANAKPYDRNKRVPL 419 Query 421 AGDLFKSRMRQPERDMQKNKLHDSDWQSNM 450 A DLFKSRMRQPE+ MQK K+HD+DWQSNM Sbjct 420 ASDLFKSRMRQPEKAMQKQKIHDNDWQSNM 449 >gi|12045164|ref|NP_072975.1| ATP-dependent RNA helicase, putative [Mycoplasma genitalium G-37] Length=410 Score = 86.7 bits (213), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/344 (24%), Positives = 149/344 (43%), Gaps = 36/344 (10%) Query 27 TTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPV---IETLLKKPSKGTTQTLVVAPTR 83 T IQQ A+ + QN+I + TG+GKT + +P+ I T L +P Q ++ PT+ Sbjct 20 TKIQQ-AVFKLWPFQNIIGIAETGSGKTFAYLLPLLDKINTSLDQP-----QAVIFVPTK 73 Query 84 ELAEQIKTTFINFAKHTHLKVVSLIGGIPIWQQLKQLENQPEIVVGTMGRVMDLLERGVI 143 EL QI K+ K + QL ++ LL + Sbjct 74 ELQWQIINILTEIKKY--FKTFTFATSFSSKAQL----------------IVSLLNEKYL 115 Query 144 KFEHLEHLIIDEVDLMLDRGFKRKLFDLLSRIEKFEQI-AVYSAS-YNEETIETAKQITK 201 + +++ DE+D+ L++ ++ + + +K + + A +SA+ +N++ KQ+ Sbjct 116 FTSKVRYVVFDEIDMFLEQSSIQQWLECVHLFQKAKPLFAFFSATLFNQQLQIIKKQVIN 175 Query 202 NGIFLAAPELKQNAPEPDNKLIDQFVCYLFSNRKKQALYSLVSQTRAKSIIVFCDTKKLV 261 + P+ + + L+ FV +L + + L +L+ + + IIVFC +K + Sbjct 176 TKVINLHPK------QWIHPLVKHFVVHLNTENRFSGLLALLKHHQNQQIIVFCSNQKSL 229 Query 262 DELCIFLRKNDVKTYPLHGDKAQFIRERNLKLFANTTAPIVLVTTDLIGRGIHVEGVDMV 321 +L L N++ ++G R+ N N + LV +DL RGI + +V Sbjct 230 KQLTQLLSNNNISFGSIYGSLTYQERKNNFTKATNNKLKL-LVVSDLFSRGIDLNYFSVV 288 Query 322 VNYSACVNFETYLHRMGRTGRNNHKGSCITFCTSHEKQAFLKLL 365 +++ Y+HR GR R N G F + KL+ Sbjct 289 ISWDLPKIDSFYIHRSGRVARLNSWGRSYLFWNDQNQSKLNKLI 332 Lambda K H a alpha 0.321 0.136 0.393 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 53005069 Query= gi|13508363|ref|NP_110313.1| ribosomal protein L28 [Mycoplasma pneumoniae M129] Length=65 Score E Sequences producing significant alignments: (Bits) Value gi|12045286|ref|NP_073097.1| ribosomal protein L28 (rpL28) [Mycop... 112 5e-37 >gi|12045286|ref|NP_073097.1| ribosomal protein L28 (rpL28) [Mycoplasma genitalium G-37] Length=64 Score = 112 bits (281), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 54/64 (84%), Positives = 58/64 (91%), Gaps = 0/64 (0%) Query 1 MAKKDQLTLRGPLYGNNRSHSKTITRRKWNVNLQPCKVKTADGKTTRILVSTRTLRTLKK 60 MAKKDQLTLRGPLYGNNRSHSKTITRRKWNVNLQ CK+K +GK TRILVST+T+RTLKK Sbjct 1 MAKKDQLTLRGPLYGNNRSHSKTITRRKWNVNLQSCKIKDTNGKVTRILVSTKTIRTLKK 60 Query 61 HNRL 64 NR Sbjct 61 QNRF 64 Lambda K H a alpha 0.317 0.128 0.374 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4424588 Query= gi|13508364|ref|NP_110314.1| osmotical inducible protein C like family; inducable by osmotic stress and by organic hydroperoxides [Mycoplasma pneumoniae M129] Length=141 Score E Sequences producing significant alignments: (Bits) Value gi|12045287|ref|NP_073098.1| hypothetical protein MG427 [Mycoplas... 221 1e-77 >gi|12045287|ref|NP_073098.1| hypothetical protein MG427 [Mycoplasma genitalium G-37] Length=141 Score = 221 bits (564), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 108/141 (77%), Positives = 122/141 (87%), Gaps = 0/141 (0%) Query 1 MDKKYDITAVLNEDSSMTAISDQFQITLDARPKHTAKGFGPLAALLSGLAACELATANLM 60 MDKKYDITAVLN+DSS+ A+SD FQITLDARPK +KG PL+A L+GLAACELATAN M Sbjct 1 MDKKYDITAVLNDDSSINAVSDNFQITLDARPKEKSKGINPLSAFLAGLAACELATANAM 60 Query 61 APAKMITINKLLMNVTGSRSTNPTDGYFGLREINLHWEIHSPNSETEIKEFIDFVSKRCP 120 A AKMIT+NK L+N+ G R TNP+DGYFGLRE+N+HWEIHSPN E EIKEFIDFVSKRCP Sbjct 61 AAAKMITLNKALINIKGYRLTNPSDGYFGLRELNIHWEIHSPNEEEEIKEFIDFVSKRCP 120 Query 121 AHNTLQGVSQLKINVNVTLVH 141 AHNTL G S KIN++VTLVH Sbjct 121 AHNTLHGTSNFKINISVTLVH 141 Lambda K H a alpha 0.317 0.131 0.376 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11527759 Query= gi|13508365|ref|NP_110315.1| hypothetical protein MPN626 [Mycoplasma pneumoniae M129] Length=172 Score E Sequences producing significant alignments: (Bits) Value gi|12045288|ref|NP_073099.1| hypothetical protein MG428 [Mycoplas... 239 1e-83 >gi|12045288|ref|NP_073099.1| hypothetical protein MG428 [Mycoplasma genitalium G-37] Length=171 Score = 239 bits (609), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 116/172 (67%), Positives = 147/172 (85%), Gaps = 1/172 (1%) Query 1 MKLQIFNTKLGLLAAKIYWKSWRHLGLSEDEIVSIALHAEHDSKKRYDPKYGLSFETYLK 60 MK I + KLGLLAAKIYWKSWR L L+ED+I+SIALHAE DSKKR++P++GLSF+ YLK Sbjct 1 MKNNISDVKLGLLAAKIYWKSWRFLELTEDDIISIALHAEQDSKKRFNPEFGLSFDNYLK 60 Query 61 LNGANFIKSSYRSLMNKVDDWIGFKDMKTLEEQNTVSYTPENYLRSVEFREMVHLAFKKA 120 LNGANFI+SS+RS++NKV+ + K +LE+QNTV TPENYLRS+EF+E++ AF KA Sbjct 61 LNGANFIRSSFRSMVNKVE-LLDSKSKYSLEKQNTVLNTPENYLRSLEFKEIITKAFNKA 119 Query 121 KNEDERQVFALYVKGYKNLEIAKKLNLTTRRVRYLISIFKDHIKVLTKRYGY 172 KN+ ER+VF+LYVKGYKN EIAKKLN++ RRVRYL+ +FK +IK+LT+RYGY Sbjct 120 KNDQERKVFSLYVKGYKNFEIAKKLNISPRRVRYLLDLFKSYIKLLTERYGY 171 Lambda K H a alpha 0.320 0.135 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15458183 Query= gi|13508366|ref|NP_110316.1| PEP-dependent HPr protein kinase phosphoryltransferase (Enzyme I) [Mycoplasma pneumoniae M129] Length=572 Score E Sequences producing significant alignments: (Bits) Value gi|12045289|ref|NP_073100.1| phosphoenolpyruvate-protein phosphot... 892 0.0 >gi|12045289|ref|NP_073100.1| phosphoenolpyruvate-protein phosphotransferase (ptsI) [Mycoplasma genitalium G-37] Length=572 Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/572 (74%), Positives = 499/572 (87%), Gaps = 0/572 (0%) Query 1 MKKLSGIGVSDGMALAKAFLVKTPEFAVNKYLKHQLTKAQAKRLLDSAFKKAVKDLEEIK 60 MKK+ GIGVSDG+A+AKAF+++TP+F V KY ++T QAK+LL SAF+KA KDLEEIK Sbjct 1 MKKIIGIGVSDGIAVAKAFIIQTPQFDVKKYTNVKMTPTQAKKLLSSAFQKAKKDLEEIK 60 Query 61 EITVNNINTEAGMIFDAHIQMLNDPTITEQLEQQLAQNVHPVIAVDTVFSQTATMFSQMQ 120 ITV NIN EAGMIFDAHIQ+LNDPTITEQLEQQL +N+HPVIAVD VF QTA MFS+M Sbjct 61 TITVKNINQEAGMIFDAHIQILNDPTITEQLEQQLNKNIHPVIAVDNVFQQTALMFSEMD 120 Query 121 DKYFQERAADILDLRQRLLAYLTGQKPHDLVKIKSDVIIVAHDLTPSQTATLNKKYVKGF 180 DKYF+ERA+DILDL QRLL+YLTG K +DL++IKSDVIIVA+DLTPSQTATLNKKYVKGF Sbjct 121 DKYFKERASDILDLHQRLLSYLTGVKLNDLIRIKSDVIIVANDLTPSQTATLNKKYVKGF 180 Query 181 LTEIGGRTSHAAIMARSLEIPAVVGIKGITTKVKDGQIVGVDGRKGIAGLDLNSKDTTEW 240 LTE GG+TSHAAIMARS+EIPA+VG+K IT+KV+DG+ VG++GRKGI G D +SKD T+W Sbjct 181 LTESGGKTSHAAIMARSMEIPAIVGLKNITSKVEDGKTVGINGRKGIVGFDFSSKDITQW 240 Query 241 KKQKALEEKYQQELKQYTNKETVTLDGHAVVVAANIGNVKDMELACQYNTNGVGLFRTEF 300 K++K LE +Q ELKQYTNK TLDG+ V+VA+NIGNVKDM+LA +YNTNG+GLFRTEF Sbjct 241 KQEKELESNFQNELKQYTNKLVKTLDGYEVIVASNIGNVKDMDLAVEYNTNGIGLFRTEF 300 Query 301 LYMNSQEWPDEETQYQAYKAVLEQAHGDLVIIRTLDIGGDKKLNYYEFPHEDNPFLGYRA 360 LYM+SQ+WPDE Q++AYK VL++A DLVIIRTLDIGGDKKLNY++FPHEDNPFLGYRA Sbjct 301 LYMSSQDWPDESVQFEAYKTVLQKAKNDLVIIRTLDIGGDKKLNYFQFPHEDNPFLGYRA 360 Query 361 LRLTLDKQDIFKTQLRALLRAADHGQLGIMFPMVATLDELLQAKQLLNQVHQELGGNKQF 420 +RLTLDKQ +FKTQLRALLRA+D+G LGIMFPMVATLDEL+Q KQLL +V QE K+F Sbjct 361 IRLTLDKQAVFKTQLRALLRASDYGNLGIMFPMVATLDELVQVKQLLTKVQQEFNETKKF 420 Query 421 KLGIMIEIPAAVLAANTLSHHVDFFSIGTNDLIQYSFAADRMNKNVSYLYQPLNPALLKL 480 KLGIMIEIP+A LAA+ L HVDFFSIG+NDLIQYSFAADRMNKNVSYLYQPLNPALL+L Sbjct 421 KLGIMIEIPSAALAADCLGKHVDFFSIGSNDLIQYSFAADRMNKNVSYLYQPLNPALLRL 480 Query 481 IYLTIEGGKVNDIWTGMCGEMAGEPLAIPLLLGLGLKEFSMSASSMFKARMIIAKLNYTE 540 I L +EGGK+N++WTGMCGEMA + AIPLLLGLGL E SMSASSMFKARM+IAK+ E Sbjct 481 IKLVVEGGKLNNVWTGMCGEMASDQYAIPLLLGLGLTELSMSASSMFKARMVIAKITINE 540 Query 541 CQTLAQKALTLANAKEVEKLVEKFFKKKDIFI 572 C++L +KAL L + V KLVE FFKKK+IFI Sbjct 541 CKSLVEKALKLTSDSAVRKLVENFFKKKNIFI 572 Lambda K H a alpha 0.319 0.134 0.377 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 69395613 Query= gi|13508367|ref|NP_110317.1| phosphoglycerate mutase [Mycoplasma pneumoniae M129] Length=508 Score E Sequences producing significant alignments: (Bits) Value gi|12045290|ref|NP_073101.1| phosphoglycerate mutase (pgm) [Mycop... 773 0.0 >gi|12045290|ref|NP_073101.1| phosphoglycerate mutase (pgm) [Mycoplasma genitalium G-37] Length=507 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/504 (71%), Positives = 423/504 (84%), Gaps = 1/504 (0%) Query 1 MHKKVLLAILDGYGISNKQHGNAVYHAKTPALDSLIKDYPCVMLEASGEAVGLPQGQIGN 60 MHKKVLLAILDGYGISN +GNAV +A TP LD LI YPCV+L+ASGEAVGLP GQIGN Sbjct 1 MHKKVLLAILDGYGISNAIYGNAVQNANTPMLDELINSYPCVLLDASGEAVGLPMGQIGN 60 Query 61 SEVGHLNIGAGRIVYTGLSLINQNIKTGAFHHNQVLLEAIARAKANNAKLHLIGLFSHGG 120 SEVGHLNIGAGR+VYTGLSLINQ+IK +F N+ L+ I + N++K+HLIGLFS+GG Sbjct 61 SEVGHLNIGAGRVVYTGLSLINQHIKDRSFFANKAFLKTIEHVEKNHSKIHLIGLFSNGG 120 Query 121 VHSHMDHLYALIKLAAPQVKMVLHLFGDGRDVAPCTMKSDLEAFMVFLKDYHNVIIGTLG 180 VHSH +HL ALI+L + K+VLHLFGDGRDVAPC++K DLE M+FLK+Y NV+IGT+G Sbjct 121 VHSHNEHLLALIELFSKHAKVVLHLFGDGRDVAPCSLKQDLEKLMIFLKNYPNVVIGTIG 180 Query 181 GRYYGMDRDQRWDREEIAYNAILGNSKASFTDPVAYVQSAYDQKVTDEFLYPAVNGNVDK 240 GRYYGMDRDQRWDRE IAY A+LG SK F DP+ Y+++ Y ++TDEF+YPA+N N++ Sbjct 181 GRYYGMDRDQRWDREMIAYKALLGVSKNKFNDPIGYIETQYQNQITDEFIYPAINANLNS 240 Query 241 EQFALKDHDSVIFFNFRPDRARQMSHMLFQTDYYDYTPKAGRKYNLFFVTMMNYEGIKPS 300 +QFAL ++D VI FNFRPDRARQMSH++F ++YY+Y P+ RK NLFFVTMMNYEGI PS Sbjct 241 DQFALNNNDGVISFNFRPDRARQMSHLIFNSNYYNYQPELKRKENLFFVTMMNYEGIVPS 300 Query 301 AVVFPPETIPNTFGEVIAHNKLKQLRIAETEKYAHVTFFFDGGVEVDLPNETKCMVPSLK 360 FPP+TI N+ GEVIA+N LKQLRIAETEKYAHVTFFFDGG EV+L NETK ++PSLK Sbjct 301 EFAFPPQTIKNSLGEVIANNNLKQLRIAETEKYAHVTFFFDGGFEVNLSNETKTLIPSLK 360 Query 361 VATYDLAPEMACKGITDQLLNQINQFDLTVLNFANPDMVGHTGNYAACVQGLEALDVQIQ 420 VATYDLAPEM+CK ITD LL ++N FD TVLNFANPDMVGHTGNY AC++ LEALDVQI+ Sbjct 361 VATYDLAPEMSCKAITDALLEKLNNFDFTVLNFANPDMVGHTGNYQACIKALEALDVQIK 420 Query 421 RIIDFCKANHITLFLTADHGNAEEMIDSNNNPVTKHTVNKVPFVCTDTNIDLQQDSASLA 480 RI+DFCKAN IT+FLTADHGNAE MID+NNNPVTKHT+N VPFVCTD N++ Q + LA Sbjct 421 RIVDFCKANQITMFLTADHGNAEVMIDNNNNPVTKHTINPVPFVCTDKNVNFNQ-TGILA 479 Query 481 NIAPTILAYLGLKQPAEMTANSLL 504 NIAPTIL YL L +P EMTA SLL Sbjct 480 NIAPTILEYLNLSKPKEMTAKSLL 503 Lambda K H a alpha 0.320 0.136 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 60809042 Query= gi|13508368|ref|NP_110318.1| triosephosphate isomerase [Mycoplasma pneumoniae M129] Length=244 Score E Sequences producing significant alignments: (Bits) Value gi|12045291|ref|NP_073102.1| triosephosphate isomerase (tpiA) [My... 349 6e-125 >gi|12045291|ref|NP_073102.1| triosephosphate isomerase (tpiA) [Mycoplasma genitalium G-37] Length=244 Score = 349 bits (895), Expect = 6e-125, Method: Compositional matrix adjust. Identities = 168/244 (69%), Positives = 202/244 (83%), Gaps = 0/244 (0%) Query 1 MRTKYLIGNWKTNKDLHQALAFVEQFKQHPAKTKAVLGIAPVHVHLTEVNKVLPNNLLLL 60 MRT+YLIGNWKTNK+L A++FVEQF+Q+ A +GIAPV+VHLTE+ K++ ++LLL Sbjct 1 MRTRYLIGNWKTNKNLKDAVSFVEQFQQNKLNYNAKIGIAPVYVHLTEIKKIISDSLLLF 60 Query 61 AQDANFIASGSYTGTVSYTQLQDIKVNSVIIGHSERRKYFNETAQVINQKLKACLQAGML 120 AQDANFI SGSYTGTVS+TQLQDI VN+ IIGHSERRKY+NET+ VINQKL ACL+A M Sbjct 61 AQDANFIESGSYTGTVSFTQLQDIGVNNSIIGHSERRKYYNETSAVINQKLFACLKASMQ 120 Query 121 VVLCIGETEGQPISFLKEDLTQVLQGIDLSLLKQLVIAYEPIWAIGTGKTATPEIANNTI 180 VVLCIGE GQ ISFLK DLT L ID SL+K LVIAYEP+WAIGTGKTATPE+AN TI Sbjct 121 VVLCIGEALGQEISFLKTDLTNCLDTIDKSLIKNLVIAYEPLWAIGTGKTATPEVANQTI 180 Query 181 AQIRVYLSELYNKEIAQQTSILYGGSVAKDNIKELAQTEQIDGFLVGKASLDVNDFLVMA 240 IR Y+++LY++ +A SILYGGSV +NI++LA EQIDGFLVGKASL++ +FL MA Sbjct 181 KTIREYINDLYDENVANNISILYGGSVDHNNIQKLAIMEQIDGFLVGKASLEIKNFLEMA 240 Query 241 QVYA 244 +VYA Sbjct 241 RVYA 244 Lambda K H a alpha 0.318 0.133 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 25170992 Query= gi|13508369|ref|NP_110319.1| hypothetical protein MPN630 [Mycoplasma pneumoniae M129] Length=404 Score E Sequences producing significant alignments: (Bits) Value gi|12045292|ref|NP_073103.1| hypothetical protein MG432 [Mycoplas... 603 0.0 gi|12045302|ref|NP_073113.1| hypothetical protein MG443 [Mycoplas... 252 3e-82 >gi|12045292|ref|NP_073103.1| hypothetical protein MG432 [Mycoplasma genitalium G-37] Length=398 Score = 603 bits (1555), Expect = 0.0, Method: Compositional matrix adjust. Identities = 288/392 (73%), Positives = 344/392 (88%), Gaps = 3/392 (1%) Query 1 MQDKNVKIQGNLVRVHLSGSFLKFQAIYKVKKLYLQLLILSVIAFFWGLLGVVFVQFSGL 60 M+DKN+KI GN VR+HLSGSFLKFQ+IY +KKLYLQL+IL+++AFFWGLLGV+FVQFSGL Sbjct 1 MKDKNIKISGNFVRIHLSGSFLKFQSIYNLKKLYLQLVILTIVAFFWGLLGVIFVQFSGL 60 Query 61 YDIGIASISQGLARLADYLIRSNKVSVDADTIYNVIFWLSQILINIPLFVLGWYKISKKF 120 YDIG+ASISQGLARL ++ I S ++VD+ TI+N IFWL+QIL N+P F+ GW+KISKKF Sbjct 61 YDIGMASISQGLARLVNFFITSQNINVDSATIFNAIFWLTQILFNVPFFIFGWFKISKKF 120 Query 121 TLLTLYFVVVSNVFGFAFSYIPGVENFFLFANLTELTKANGGLEQAINNQGVQLIFWEQT 180 TLLTLYFV VSN+FGF FSYIPG++NFFLFANLT T +GG E IN +GVQLIFWE++ Sbjct 121 TLLTLYFVAVSNLFGFFFSYIPGIDNFFLFANLT--TAKDGGFENLINEKGVQLIFWEKS 178 Query 181 AEKQISLMFYALIWGFLQAVFYSVILIIDASSGGLDFLAFWYSEKKHKDIGGILFIVNTL 240 AEKQ+SL+FY LIWGFLQAVFYSVILIIDAS+GGLDFLAFWYSEKK+KDIGGIL ++NT+ Sbjct 179 AEKQVSLLFYGLIWGFLQAVFYSVILIIDASTGGLDFLAFWYSEKKYKDIGGILMLINTV 238 Query 241 SFLIGYTIGTYLTGSLLAQGF-QEDRQKPFGVAFFLSPNLVFTIFMNIILGIFTSYFFPK 299 SF+IGY IGTYLTGSL Q + +D+ +PFGVAFFLSPNLVFT+ MNI+LG+FTS++FPK Sbjct 239 SFIIGYVIGTYLTGSLSVQSYVGDDKHQPFGVAFFLSPNLVFTLLMNIVLGLFTSFYFPK 298 Query 300 YQFVKVEVYGKHMEQMRNYLLSSNQSFAVTMFEVEGGYSRQKNQVLVTNCLFTKTAELLE 359 YQFVKVEVYGKH+E++RNYLL + Q F++TMFE EGGYSRQK QVLVTNCL K A+LLE Sbjct 299 YQFVKVEVYGKHIEKIRNYLLDNQQWFSITMFEAEGGYSRQKTQVLVTNCLLIKAAKLLE 358 Query 360 AVRRVDPDALFSITFIKKLDGYIYERKAPDKV 391 VR+ D DALFSITFIKKLDGYIY+R+ + Sbjct 359 DVRKFDRDALFSITFIKKLDGYIYDRRTNKQT 390 >gi|12045302|ref|NP_073113.1| hypothetical protein MG443 [Mycoplasma genitalium G-37] Length=395 Score = 252 bits (643), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 145/392 (37%), Positives = 233/392 (59%), Gaps = 14/392 (4%) Query 2 QDKNVKIQGNLVRVHLSGSFLKFQAIYKVKK--LYLQLLILSVIAFFWGLLGVVFVQFSG 59 ++ + + RV +S SFL F +Y+ KK Y+ + +LS+I F L ++F+Q +G Sbjct 10 KESKITVASGSKRVRISNSFLMFSNLYEAKKPLKYVLVYLLSIINAF---LLLIFIQKTG 66 Query 60 LYDIGIASISQGLARLADYLIRSNKVSVDADTIYNVIFWLSQILINIPLFVLGWYKISKK 119 LY GI+S++QG ARL L++S I+N+++WL + INIPL + + KI K Sbjct 67 LYSFGISSLTQGFARLVFVLLKSFD-ETQRLLIFNILYWLLYVFINIPLIIFSYKKIGKN 125 Query 120 FTLLTLYFVVVSNVFGFAFSYIPGVENFF-LFANLTELT--KANGGLEQAINNQGVQLIF 176 FT+L+ +FVV SNVFGF S IPG +N + A++T+ KA L Q+ G Sbjct 126 FTILSTHFVVASNVFGFLISIIPGSDNLPPMLASITDTNFWKAAKDLNQS---AGFVPFL 182 Query 177 WEQTAEKQ--ISLMFYALIWGFLQAVFYSVILIIDASSGGLDFLAFWYSEKKHKDIGGIL 234 W T++ IS YA I+GF + S++ I+ S+GG DFL +Y+ KK++ +G IL Sbjct 183 WSDTSQGNVIISTFIYAAIYGFYNGISVSLLYILGGSAGGADFLTQYYARKKNRSVGSIL 242 Query 235 FIVNTLSFLIGYTIGTYLTGSLLAQGFQEDRQKPFGVAFFLSPNLVFTIFMNIILGIFTS 294 F VN+ +I IG+++ GSLL Q R + V+ F SPNL+ T F ++ G S Sbjct 243 FYVNSFILIIAILIGSFVAGSLLLQDVNNYRDSAWEVSLFFSPNLIATFFSILLTGTVVS 302 Query 295 YFFPKYQFVKVEVYGKHMEQMRNYLLSSNQSFAVTMFEVEGGYSRQKNQVLVTNCLFTKT 354 Y FP+Y F +++V+ +E++R LLS N + ++++ E GGYS K +++V+ ++ + Sbjct 303 YLFPRYNFAEIKVFTDKLEEVRKALLSDNANHSLSIQETLGGYSLLKKKMIVSVSMYVEI 362 Query 355 AELLEAVRRVDPDALFSITFIKKLDGYIYERK 386 L++ +R++D D L SIT I+ +DG+IY R+ Sbjct 363 PHLIKIIRQIDKDCLVSITRIRGIDGHIYLRQ 394 Lambda K H a alpha 0.327 0.143 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 46838892 Query= gi|13508370|ref|NP_110320.1| elongation factor Ts [Mycoplasma pneumoniae M129] Length=298 Score E Sequences producing significant alignments: (Bits) Value gi|12045293|ref|NP_073104.1| elongation factor Ts (tsf) [Mycoplas... 460 4e-167 >gi|12045293|ref|NP_073104.1| elongation factor Ts (tsf) [Mycoplasma genitalium G-37] Length=298 Score = 460 bits (1184), Expect = 4e-167, Method: Compositional matrix adjust. Identities = 213/298 (71%), Positives = 266/298 (89%), Gaps = 0/298 (0%) Query 1 MATKIELIKELRKTTQASMMDCKKALEQNNDDLEKAIKWLRENGIVKSAKKLGKVAADGC 60 MATKIELIKELRK+TQAS+MDCK+ALE+NNDD EKA+KWLRENGIVKS KKL KVA++G Sbjct 1 MATKIELIKELRKSTQASVMDCKQALEKNNDDFEKAVKWLRENGIVKSTKKLNKVASEGI 60 Query 61 IVLHSDHHKAVMVEINSQTDFVARSQELTDFAQLMISEVFKKATPTTTIEEVTQYELQGK 120 IVL S+ HKA+MVEINSQTDFVA++QEL +F+ LM+ ++F+K P T + E+ + ++ Sbjct 61 IVLKSNLHKAIMVEINSQTDFVAKNQELKEFSDLMLEKIFEKVNPKTELVEIEKIQINND 120 Query 121 EKVAERLALVASKTDEKIVLRRLMVFESKTNHIFSYLHANKRIGVILEVEGKFDEQDGKH 180 EKV+E+LAL+ASKTDEKIVLRR++VFE+KTN IF+YLHANKRIGVI+E++GK +E DGKH Sbjct 121 EKVSEKLALIASKTDEKIVLRRVVVFETKTNQIFTYLHANKRIGVIIEIQGKLNEDDGKH 180 Query 181 LAMHIAANSPQFIDQDNVDQTWLANETSIIKSQAKLEVQDNPKKAAFLDKTIAGRVNKLL 240 LAMHIAANSPQFIDQ +V+QTWL NE +II+SQA+LEV++NPKKA FL+KTI GRVNKLL Sbjct 181 LAMHIAANSPQFIDQSDVNQTWLQNERNIIRSQAELEVKENPKKAIFLEKTIEGRVNKLL 240 Query 241 IDICLVNQKYLVDESKTVGQFLKEKNSKVIHFVRFEVGEGIVKEAVDFASEVSAQMKK 298 ID CL+NQKYL+DE+KT+GQFLKEK +KV+ F+R+EVGEGI+KE VDF SEV+AQ+K+ Sbjct 241 IDTCLINQKYLIDETKTIGQFLKEKQAKVLKFIRYEVGEGIIKETVDFVSEVNAQIKQ 298 Lambda K H a alpha 0.316 0.130 0.351 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32387172 Query= gi|13508371|ref|NP_110321.1| uridylate kinase [Mycoplasma pneumoniae M129] Length=235 Score E Sequences producing significant alignments: (Bits) Value gi|12045294|ref|NP_073105.1| uridylate kinase (pyrH) [Mycoplasma ... 314 4e-111 >gi|12045294|ref|NP_073105.1| uridylate kinase (pyrH) [Mycoplasma genitalium G-37] Length=243 Score = 314 bits (804), Expect = 4e-111, Method: Compositional matrix adjust. Identities = 162/234 (69%), Positives = 199/234 (85%), Gaps = 0/234 (0%) Query 1 MRLKILIKLSGAGMSADSSEPFSNQFLETVIAQLKQLVPNYQIGIVIGGGNIMRGKSCSD 60 +R +I+IKLSGAG++ ++S+PFSN F ET+I QLK L +YQ+GIVIGGGNI+RG +C + Sbjct 8 IRQRIIIKLSGAGLTKENSQPFSNDFFETIINQLKVLKESYQVGIVIGGGNIIRGNNCQE 67 Query 61 YNITEIAGHHLGIMATVINGAFLKAKFDSHKLNSTLLSAVSCPSLATHIVSQTTIDDAFK 120 +NI E GH LGI+ATV+NG FLKAK D+H L S LLSA+SCPSLA I+SQ TID AF+ Sbjct 68 FNIAEYHGHQLGIIATVVNGYFLKAKLDAHNLKSALLSAISCPSLAVQILSQQTIDKAFE 127 Query 121 NHDIVIFAGGTGNPYFSTDTAVALRATQMQADIILIGKNGVDGVYTADPKKDKHAKFLAS 180 +D VIF+GGTGNPYFSTDTA+ALRA Q +A ILIGKNGVDGVYTADPKKDK+A FL + Sbjct 128 ENDFVIFSGGTGNPYFSTDTALALRAVQTKAVAILIGKNGVDGVYTADPKKDKNATFLPT 187 Query 181 LTYAEAIKNDLQIMDITAFTMCKENNLKVIIFNINAEHAIIKALSKQGKYTLIE 234 L Y AIKNDL+IMDITAFTMCKENNLK+IIFNINAE+A++ AL+K+G++T+IE Sbjct 188 LNYDHAIKNDLKIMDITAFTMCKENNLKIIIFNINAENALLDALNKKGRFTIIE 241 Lambda K H a alpha 0.319 0.134 0.375 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23883839 Query= gi|13508372|ref|NP_110322.1| hypothetical protein MPN633 [Mycoplasma pneumoniae M129] Length=247 ***** No hits found ***** Lambda K H a alpha 0.315 0.133 0.358 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 25600043 Query= gi|13508373|ref|NP_110323.1| hypothetical protein MPN634 [Mycoplasma pneumoniae M129] Length=181 ***** No hits found ***** Lambda K H a alpha 0.316 0.129 0.395 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 16758404 Query= gi|13508374|ref|NP_110324.1| hypothetical protein MPN635 [Mycoplasma pneumoniae M129] Length=352 ***** No hits found ***** Lambda K H a alpha 0.316 0.135 0.388 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 39779765 Query= gi|13508375|ref|NP_110325.1| ribosome releasing factor [Mycoplasma pneumoniae M129] Length=184 Score E Sequences producing significant alignments: (Bits) Value gi|12045295|ref|NP_073106.1| ribosome releasing factor (frr) [Myc... 277 2e-98 >gi|12045295|ref|NP_073106.1| ribosome releasing factor (frr) [Mycoplasma genitalium G-37] Length=183 Score = 277 bits (709), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 130/184 (71%), Positives = 159/184 (86%), Gaps = 1/184 (1%) Query 1 MSPEKYLNFFKETADKKFQWLKEELSKIRTGRPNPKLFDNLLVESYGDRMPMVALAQIAV 60 M+ Y++FFK+ ADKK QWLKEEL+KIRTGRPNPK+FDNLL+ESYG +MP+++LAQ+ + Sbjct 1 MTKAHYIDFFKQAADKKIQWLKEELTKIRTGRPNPKIFDNLLIESYGQKMPLISLAQVTI 60 Query 61 NPPREIVIKPFDVKNNINAIYSEIQRANLGVQPVIDGDKIRINFPPMTQESRLESIKQAK 120 NPPREI+IKPFD K+N NAIYSEIQRAN+GVQPVIDG+KIR+NFP +TQE+RLE+IK K Sbjct 61 NPPREIIIKPFDPKSNTNAIYSEIQRANIGVQPVIDGEKIRVNFPQITQETRLENIKHVK 120 Query 121 KVVEQIHQELRSVRRDTLQMIKKDDHKDEDFEEFLKEEVEKVNKQYIAQLETIQKQKEKE 180 K++EQI+QELR VRRD LQMIKKD+H +ED E LK E+EK+NK Y QLE IQK KEKE Sbjct 121 KIIEQIYQELRVVRRDALQMIKKDNH-NEDLENSLKAEIEKINKNYSNQLEEIQKDKEKE 179 Query 181 LLVV 184 LL + Sbjct 180 LLTI 183 Lambda K H a alpha 0.316 0.134 0.367 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 17191811 Query= gi|13508376|ref|NP_110326.1| CDP-diglyceride synthetase [Mycoplasma pneumoniae M129] Length=395 Score E Sequences producing significant alignments: (Bits) Value gi|12045296|ref|NP_073107.1| M. genitalium predicted coding regio... 468 2e-167 >gi|12045296|ref|NP_073107.1| M. genitalium predicted coding region MG437 [Mycoplasma genitalium G-37] Length=374 Score = 468 bits (1205), Expect = 2e-167, Method: Compositional matrix adjust. Identities = 247/370 (67%), Positives = 302/370 (82%), Gaps = 2/370 (1%) Query 26 FLMFSAFADGFNFWSPWSTDFNSRVIHIKSDGNIETTSIVSHELHPDFKAVRFAFGLVIV 85 FL+ SAFADGFNFWSPWS DFNSR + ++ + TS++S E++ +FKAVRF+F ++I+ Sbjct 3 FLLISAFADGFNFWSPWSADFNSRTLKVEQASGV--TSVISTEINENFKAVRFSFSIIII 60 Query 86 LFISVIAVLMNWELSNSIFKNYEKLNLSLSLLSGIMVSGGMIPTFFVIYFREWNATVNWI 145 L + VI LM WEL +I KN KL+LSL+LL+ ++ GMI TF V+YF +WNATVN I Sbjct 61 LIVGVIGSLMIWELFTNILKNKPKLSLSLTLLNAGIIIFGMIGTFVVVYFYKWNATVNGI 120 Query 146 WTASFAGMIVFLWAVYMISTSFIKIRPSLQVIYSLGAVICFIACIGTIYFSVIRGWTTIF 205 WT SF +V LW +Y+ S +I+ SLQ+ YSLGA+ CFIA IGTIYFSVIRGWTTIF Sbjct 121 WTLSFTLSVVLLWIIYIACMSKTRIKFSLQLSYSLGAIACFIASIGTIYFSVIRGWTTIF 180 Query 206 LLIAIGVCTDTFAYLFGKRFGKNPLIKISPSKTWEGAFFGVTGTVLTISIICVLYSIPNY 265 LL+++ V DTF +LFGKRFGKNPLIKISPSKTWEGAFFG+ T++ ++++CVLYSIP + Sbjct 181 LLMSLAVSVDTFPFLFGKRFGKNPLIKISPSKTWEGAFFGIISTIVVVALLCVLYSIPFF 240 Query 266 VRQPSIKDASKTALQTPQNYDVHNLITNVFLISFISGGSTFYIYWWVSTLALIFTASIFA 325 V +P+ + AL TPQNYD HNLITN+FLI+FISGGS+FYIYWWVSTLALIFT S+FA Sbjct 241 VAKPTFNQTNGIALNTPQNYDSHNLITNIFLIAFISGGSSFYIYWWVSTLALIFTGSVFA 300 Query 326 IGGDLFFSYIKRLTKIKDFSKLLGKHGGILDRFDSSSFLISFFFIYHVIAGISSNQRLLM 385 IGGDLFFSYIKRL IKDFSK+LGKHGG+LDRFDSSSFLISFFF+YH+IAG SNQRLLM Sbjct 301 IGGDLFFSYIKRLISIKDFSKVLGKHGGVLDRFDSSSFLISFFFVYHLIAGTISNQRLLM 360 Query 386 EPNTYFSAVS 395 EPNTYFSA++ Sbjct 361 EPNTYFSAIT 370 Lambda K H a alpha 0.330 0.142 0.446 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 45569163 Query= gi|13508377|ref|NP_110327.1| specificity determining subunit for restriction enzyme belonging to the K family of S proteins [Mycoplasma pneumoniae M129] Length=375 Score E Sequences producing significant alignments: (Bits) Value gi|12045297|ref|NP_073108.1| hypothetical protein MG438 [Mycoplas... 571 0.0 >gi|12045297|ref|NP_073108.1| hypothetical protein MG438 [Mycoplasma genitalium G-37] Length=383 Score = 571 bits (1472), Expect = 0.0, Method: Compositional matrix adjust. Identities = 266/375 (71%), Positives = 324/375 (86%), Gaps = 1/375 (0%) Query 1 MTPKLKLNTNSNWTKKTLGSLFELKKGEMLEKELLAPDGKYEYFNGGIKASGRTNEFNTF 60 MTPKLKLN N NWTK+T+ SLF+LKKGEMLEKEL+ P+GKYEYFNGG+K SGRT++FNTF Sbjct 1 MTPKLKLNNNINWTKRTIDSLFDLKKGEMLEKELITPEGKYEYFNGGVKNSGRTDKFNTF 60 Query 61 KNTISIIIGGSCGYVRLADKDYFCGQSSCTLTVLDPLEIDLKFAYYALKSQEEKITSLAS 120 KNTIS+I+GGSCGYVRLADK++FCGQS+CTL +LDPLE+DLKFAYYALKSQ+E+I +LA Sbjct 61 KNTISVIVGGSCGYVRLADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQQERIEALAF 120 Query 121 GTTIKNIRLSDLKDLPIPLVKSIQDQRTIAHALSVFDLRIEHLNELIEVNRKLRDEYAHK 180 GTTI+NIR+SDLK+L IP + +Q IA+ LSVFD R+E+L LIE+NRKLRDEYAHK Sbjct 121 GTTIQNIRISDLKELEIPFTSNKNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHK 180 Query 181 LFTLDPDFLTHWNLHELHEQMGEISLGEVFHLKSGKYLKADERFEDGKFPYYGAGIESTS 240 LF+LD FL+HW L L QM EI+LGE+F+ KSGKYLK++ER E+GKFPYYGAGI++T Sbjct 181 LFSLDEAFLSHWKLEALQSQMHEITLGEIFNFKSGKYLKSEERLEEGKFPYYGAGIDNTG 240 Query 241 FVNEPNTKGDTLSMIANGYSIGNIRYHTIPWFNGTGGIAMEALKPNKTYVPFFYCALKYM 300 FV EPNT+ DT+S+I+NGYS+GNIRYH IPWFNGTG IA+E + N+ YVPFFYCALKY+ Sbjct 241 FVAEPNTEKDTISIISNGYSLGNIRYHEIPWFNGTGSIALEPMN-NEIYVPFFYCALKYL 299 Query 301 QKDLKERFKRDESPFISLKLAGEIKVPFVKSFALQRKAGKIIYLLDKTLEECKEEAKSLI 360 QKD+KER K D+SPF+SLKLAGEIKVP+VKSF LQRKAGKI++LLD+ L++ K+E SL Sbjct 300 QKDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRKAGKIVFLLDQKLDQYKKELSSLT 359 Query 361 SIRDNLLGKLFPTLS 375 IRD LL KLFP ++ Sbjct 360 VIRDTLLKKLFPDMT 374 Lambda K H a alpha 0.318 0.137 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 42747543 Query= gi|13508378|ref|NP_110328.1| conserved hypothetical protein [Mycoplasma pneumoniae M129] Length=287 Score E Sequences producing significant alignments: (Bits) Value gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma ge... 170 1e-53 gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma ge... 77.0 3e-18 >gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=258 Score = 170 bits (430), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 86/269 (32%), Positives = 161/269 (60%), Gaps = 14/269 (5%) Query 20 LALILSSCSALVASVELKSLSELQNLADRNTELTKNKRTLITTLRESYGLNPKGTLNLLF 79 L ++++CS L + SL++L+N +N+EL ++K+ L+T+LR+S+ ++ K N+L Sbjct 3 LGSLITACSNLSSGTNFSSLNQLRNSFSKNSELNQDKKELVTSLRDSFEVDSKSATNVLL 62 Query 80 EGWRYTLLSQRILERWQTEVGRFAKSFGNGSNQNSVQPNATLKGLKLSERSTTEIQLLAE 139 + WR++L ++ILE+ + RF K+FG+G ++ V+P+ +KGL+L ER T + + Sbjct 63 DAWRFSLQDEKILEKQ--DPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIIN 120 Query 140 QAITVSKQEVKEFTYKVESNKQFEATVKIKADLKIDPTKAMSHIENI-FKDDETKKKDAQ 198 I +S Q V +F++ S++ F+ ++++A D +A S++ I D + K K Sbjct 121 NVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSDIKDK--- 177 Query 199 NSLTMSMGQNEALEATFTYSPATQGIFGRASFDRFTSNIKLNTKLRIQVSSTSDLMKKLL 258 NS++ + FTY+P + +F ++SFD I NT LR+Q+ +LM+KLL Sbjct 178 NSISADL--------IFTYTPPSSNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLL 229 Query 259 ENSLTSSLKDQSFDNEGVNLFPYTLFALL 287 +++ L DQ+F ++ ++L PY L+++L Sbjct 230 QSNFVGQLADQNFQDQTIDLLPYVLYSIL 258 >gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=272 Score = 77.0 bits (188), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/293 (25%), Positives = 134/293 (46%), Gaps = 33/293 (11%) Query 7 LKLRKWIWASIPSLALILSSCSALVASVELKSLSELQNLADRNTELTKNKRTLITTLRES 66 +KLRK + SL+ + +CS+ +E K+ + Q N EL+KN +T L++ Sbjct 1 MKLRKIFLLPLISLSTLSVACSSTDPGLE-KAQAYFQR---NNIELSKNNA--VTFLKKG 54 Query 67 YGLNPKGTLNLLFEGWRYTLLSQRILERWQTEVGRFAKSFGNGSNQNSVQPNATLKGLKL 126 Y + + +N +F W+ TLL ++LE+ + RFAK+FG ++ V PN + KGL Sbjct 55 YSSDKEEVINTVFASWKTTLLDYQLLEK-PLDYSRFAKAFGVNKSKEDVTPNISAKGLYF 113 Query 127 SERSTTEIQLLAEQAITVSKQEVKEFTYKVESNKQFEATVKIKADLKIDPTKAMSHIENI 186 E + I + V Q+V F Y ++N F+ + +K + I Sbjct 114 DE-TYPGISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLK-------------MTGI 159 Query 187 FKDDETKKKDAQNSLTMSMGQNEA----------LEATFTYSPATQG-IFGRASFDRFTS 235 D T ++ L + G +E+ + FTY+P T ++F + Sbjct 160 VGSDNTSTSLIKSFLASTSGVSESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFSSIPA 219 Query 236 NIKLNTKLRIQVSSTSDLMKKLLE-NSLTSSLKDQSFDNEGVNLFPYTLFALL 287 +I ++I +S++ + + LL N ++ ++F + ++L P+ + LL Sbjct 220 SINFPFDIKIDMSTSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 Lambda K H a alpha 0.313 0.127 0.344 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31072194 Query= gi|13508379|ref|NP_110329.1| hypothetical protein MPN640 [Mycoplasma pneumoniae M129] Length=300 Score E Sequences producing significant alignments: (Bits) Value gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma ge... 248 1e-83 gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma ge... 127 4e-37 >gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=272 Score = 248 bits (632), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 136/282 (48%), Positives = 179/282 (63%), Gaps = 18/282 (6%) Query 1 MKL-KLLLIPLLGSSLLLSACSSATSQVISSLSSAQKYFEANKGELNKKNVINILKDGYN 59 MKL K+ L+PL+ S L ACSS L AQ YF+ N EL+K N + LK GY+ Sbjct 1 MKLRKIFLLPLISLSTLSVACSSTDP----GLEKAQAYFQRNNIELSKNNAVTFLKKGYS 56 Query 60 SDPNKTVNALLAGWKYTLMDQKLLERNLDASRFASAFGSTSKKDDITPNISEKSLFLADT 119 SD + +N + A WK TL+D +LLE+ LD SRFA AFG K+D+TPNIS K L+ +T Sbjct 57 SDKEEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDET 116 Query 120 FPGISSEIAKVFKVEKQTVSGFSYSWNSPKKFQVNIQIKMDGKI--DESSKALIKSFLEG 177 +PGIS +IA V V+ Q V F YSW + F+V I +KM G + D +S +LIKSFL Sbjct 117 YPGISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLAS 176 Query 178 NSSGGKGSNGKNSIDESEYTGEKAKFTGNFIFTYTPPTGGARNFSDKSFDVPTSSINFPA 237 S + ES++TG+KA F G+ IFTYTPPT R S+ +F +SINFP Sbjct 177 TS----------GVSESDFTGDKANFDGDVIFTYTPPTDN-RRVSESTFSSIPASINFPF 225 Query 238 NVKIDVTTSHTKLNELLESNEQVKKMKSRQLTGKLFNLLPFF 279 ++KID++TSH KLN LL +NEQVKK+++R GK +LLPFF Sbjct 226 DIKIDMSTSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFF 267 >gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=258 Score = 127 bits (320), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/273 (34%), Positives = 142/273 (52%), Gaps = 26/273 (10%) Query 10 LLGSSLLLSACSSATSQV-ISSLSSAQKYFEANKGELN--KKNVINILKDGYNSDPNKTV 66 +LGS L++ACS+ +S SSL+ + F N ELN KK ++ L+D + D Sbjct 2 VLGS--LITACSNLSSGTNFSSLNQLRNSFSKN-SELNQDKKELVTSLRDSFEVDSKSAT 58 Query 67 NALLAGWKYTLMDQKLLERNLDASRFASAFGSTSKKDDITPNISEKSLFLADTF-PGISS 125 N LL W+++L D+K+LE+ D SRF AFGS K+D+ P+ K L L + + ++S Sbjct 59 NVLLDAWRFSLQDEKILEKQ-DPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVAS 117 Query 126 EIAKVFKVEKQTVSGFSYSWNSPKKFQVNIQIKMDGKIDESSKALIKSFLEGNSSGGKGS 185 I V K+ QTV+ FS+ +NS + F+V I+++ G D A KS+L Sbjct 118 IINNVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDS---AQAKSYLSQIGLSDSDI 174 Query 186 NGKNSIDESEYTGEKAKFTGNFIFTYTPPTGGARNFSDKSFDVPTSSINFPANVKIDVTT 245 KNSI + + IFTYTPP+ FS SFD INF N+++ + Sbjct 175 KDKNSI------------SADLIFTYTPPSSNL--FSKSSFDTLLRKINFNTNLRLQIIG 220 Query 246 SHTKLNELLESNEQVKKMKSRQLTGKLFNLLPF 278 + +LL+SN V ++ + + +LLP+ Sbjct 221 KDELMQKLLQSNF-VGQLADQNFQDQTIDLLPY 252 Lambda K H a alpha 0.313 0.130 0.359 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32671270 Query= gi|13508380|ref|NP_110330.1| hypothetical protein MPN641 [Mycoplasma pneumoniae M129] Length=276 Score E Sequences producing significant alignments: (Bits) Value gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma ge... 301 2e-105 gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma ge... 128 2e-37 >gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=258 Score = 301 bits (772), Expect = 2e-105, Method: Compositional matrix adjust. Identities = 150/260 (58%), Positives = 195/260 (75%), Gaps = 2/260 (1%) Query 17 MLFGTALTACSNSDFQTNLTSLNQLREGVNQNTSLTQDKKAFVESLQKAFENNPEGTTKV 76 M+ G+ +TACSN TN +SLNQLR ++N+ L QDKK V SL+ +FE + + T V Sbjct 1 MVLGSLITACSNLSSGTNFSSLNQLRNSFSKNSELNQDKKELVTSLRDSFEVDSKSATNV 60 Query 77 LLDAWKFTLLDSKILESKDPSRFVKAFGSGKSNEDVEPNASVKGLRLDKRFEPSTANIIN 136 LLDAW+F+L D KILE +DPSRFVKAFGSGKS EDVEP+ VKGLRL +R+ + A+IIN Sbjct 61 LLDAWRFSLQDEKILEKQDPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIIN 120 Query 137 NVISLNEQKVEAFNIQYKSRTSFKVQVKLNAQGKYQKSQVQSYLQQIGLNDGDLKQESGT 196 NVI L+ Q V F+ Y S FKVQ++L A G + +Q +SYL QIGL+D D+K + + Sbjct 121 NVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSDIK-DKNS 179 Query 197 LSADLIFTYTVPESNLFSRKNFDTLMKKINFNTTLKIDMVGKDEIMKKILQSTTFTNNLS 256 +SADLIFTYT P SNLFS+ +FDTL++KINFNT L++ ++GKDE+M+K+LQS F L+ Sbjct 180 ISADLIFTYTPPSSNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLLQS-NFVGQLA 238 Query 257 SQTFQDQSIDLLPYLLYSIL 276 Q FQDQ+IDLLPY+LYSIL Sbjct 239 DQNFQDQTIDLLPYVLYSIL 258 >gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=272 Score = 128 bits (321), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/284 (33%), Positives = 141/284 (50%), Gaps = 22/284 (8%) Query 1 MNKKRLLPKASLGALFMLFGTALTACSNSDFQTNLTSLNQLREGVNQNTSLTQDKKAFVE 60 + K LLP SL L + ACS++D L + + +N ++ K V Sbjct 3 LRKIFLLPLISLSTLSV-------ACSSTD-----PGLEKAQAYFQRN-NIELSKNNAVT 49 Query 61 SLQKAFENNPEGTTKVLLDAWKFTLLDSKILESK-DPSRFVKAFGSGKSNEDVEPNASVK 119 L+K + ++ E + +WK TLLD ++LE D SRF KAFG KS EDV PN S K Sbjct 50 FLKKGYSSDKEEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAK 109 Query 120 GLRLDKRFEPSTANIINNVISLNEQKVEAFNIQYKSRTSFKVQVKLNAQG-----KYQKS 174 GL D+ + P + I V+ + QKV F +K+ FKVQ+ L G S Sbjct 110 GLYFDETY-PGISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTS 168 Query 175 QVQSYLQQI-GLNDGDLKQESGTLSADLIFTYTVPESNL-FSRKNFDTLMKKINFNTTLK 232 ++S+L G+++ D + D+IFTYT P N S F ++ INF +K Sbjct 169 LIKSFLASTSGVSESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFSSIPASINFPFDIK 228 Query 233 IDMVGKDEIMKKILQSTTFTNNLSSQTFQDQSIDLLPYLLYSIL 276 IDM E + +L + + ++TF+ +SIDLLP+ Y++L Sbjct 229 IDMSTSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 Lambda K H a alpha 0.314 0.129 0.348 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29504331 Query= gi|13508381|ref|NP_110331.1| hypothetical protein MPN642 [Mycoplasma pneumoniae M129] Length=279 Score E Sequences producing significant alignments: (Bits) Value gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma ge... 270 7e-93 gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma ge... 134 7e-40 >gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=272 Score = 270 bits (691), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 142/282 (50%), Positives = 190/282 (67%), Gaps = 13/282 (5%) Query 1 MKL-KLYLIPLLASGIILSACSSTTSQVISSLSSAQKYFEANKGELNKNNVINILKDGYN 59 MKL K++L+PL++ + ACSST L AQ YF+ N EL+KNN + LK GY+ Sbjct 1 MKLRKIFLLPLISLSTLSVACSSTDP----GLEKAQAYFQRNNIELSKNNAVTFLKKGYS 56 Query 60 SDPNKTVNALLAGWKYTLMDQKLLENNLDPSRFKNTFGPNKNKDDVTPNISEKGLFLNET 119 SD + +N + A WK TL+D +LLE LD SRF FG NK+K+DVTPNIS KGL+ +ET Sbjct 57 SDKEEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDET 116 Query 120 FTGLGSQIAEVFNVQKQIVSGFSYSWTSPKSFKVNIHIKMEGMINEKSKET--IKSFLSN 177 + G+ QIA V V+ Q V F YSW + FKV IH+KM G++ + T IKSFL++ Sbjct 117 YPGISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLAS 176 Query 178 KDSNGSNSVEESEYTGDKAKFTADFIFSYTPPTGGTRSLTDKSFDVITNMINFPADVKID 237 ++ V ES++TGDKA F D IF+YTPPT R +++ +F I INFP D+KID Sbjct 177 -----TSGVSESDFTGDKANFDGDVIFTYTPPTDN-RRVSESTFSSIPASINFPFDIKID 230 Query 238 VNTSHNKLNELLEKNDQVKRMKSRTFNGRNIDLLPFFYYALL 279 ++TSH KLN LL N+QVK++++RTF G++IDLLPFFYY LL Sbjct 231 MSTSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 >gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=258 Score = 134 bits (337), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 88/270 (33%), Positives = 141/270 (52%), Gaps = 19/270 (7%) Query 14 GIILSACSSTTSQV-ISSLSSAQKYFEANKGELN--KNNVINILKDGYNSDPNKTVNALL 70 G +++ACS+ +S SSL+ + F N ELN K ++ L+D + D N LL Sbjct 4 GSLITACSNLSSGTNFSSLNQLRNSFSKN-SELNQDKKELVTSLRDSFEVDSKSATNVLL 62 Query 71 AGWKYTLMDQKLLENNLDPSRFKNTFGPNKNKDDVTPNISEKGLFLNETFT-GLGSQIAE 129 W+++L D+K+LE DPSRF FG K+K+DV P+ KGL L E +T + S I Sbjct 63 DAWRFSLQDEKILEKQ-DPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIINN 121 Query 130 VFNVQKQIVSGFSYSWTSPKSFKVNIHIKMEGMINEKSKETIKSFLSNKDSNGSNSVEES 189 V + Q V+ FS+ + S + FKV I ++ G + ++ S + DS+ Sbjct 122 VIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSD-------- 173 Query 190 EYTGDKAKFTADFIFSYTPPTGGTRSLTDKSFDVITNMINFPADVKIDVNTSHNKLNELL 249 DK +AD IF+YTPP+ + SFD + INF ++++ + + +LL Sbjct 174 --IKDKNSISADLIFTYTPPSSNL--FSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLL 229 Query 250 EKNDQVKRMKSRTFNGRNIDLLPFFYYALL 279 + N V ++ + F + IDLLP+ Y++L Sbjct 230 QSN-FVGQLADQNFQDQTIDLLPYVLYSIL 258 Lambda K H a alpha 0.313 0.130 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29931930 Query= gi|13508382|ref|NP_110332.1| hypothetical protein MPN643 [Mycoplasma pneumoniae M129] Length=302 Score E Sequences producing significant alignments: (Bits) Value gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma ge... 316 1e-110 gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma ge... 115 4e-32 >gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=258 Score = 316 bits (809), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 154/259 (59%), Positives = 198/259 (76%), Gaps = 1/259 (0%) Query 44 MLFGTALTACSNSGFEANLTSLNQLRTSASKNTNLTQNKADLVTALKSAFENNPEGTTRV 103 M+ G+ +TACSN N +SLNQLR S SKN+ L Q+K +LVT+L+ +FE + + T V Sbjct 1 MVLGSLITACSNLSSGTNFSSLNQLRNSFSKNSELNQDKKELVTSLRDSFEVDSKSATNV 60 Query 104 LLDAWKFTLLDAQILEKQDFSKFSKSFGSGRSIEDVEPSAGVRGLRLVERYTQDTANIIN 163 LLDAW+F+L D +ILEKQD S+F K+FGSG+S EDVEPS GV+GLRLVERYTQ+ A+IIN Sbjct 61 LLDAWRFSLQDEKILEKQDPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIIN 120 Query 164 NVIKLDKQKVEAFSIQYKDPKNFRVQVKINAKGNYKKDTVKTYLSQVGLSDGDLNDTGTL 223 NVIKL Q V FS Y ++F+VQ+++ A G + K+YLSQ+GLSD D+ D ++ Sbjct 121 NVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSDIKDKNSI 180 Query 224 EAEIIYTYMPPAASFFSASKFDKLTRAINFNTNLRIQIIGKDSVMTKLLQQSSFVKQLAD 283 A++I+TY PP+++ FS S FD L R INFNTNLR+QIIGKD +M KLL QS+FV QLAD Sbjct 181 SADLIFTYTPPSSNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLL-QSNFVGQLAD 239 Query 284 QKFQDQSINLLPYVLYSIL 302 Q FQDQ+I+LLPYVLYSIL Sbjct 240 QNFQDQTIDLLPYVLYSIL 258 >gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=272 Score = 115 bits (287), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 125/237 (53%), Gaps = 12/237 (5%) Query 75 NTNLTQNKADLVTALKSAFENNPEGTTRVLLDAWKFTLLDAQILEKQ-DFSKFSKSFGSG 133 N L++N A VT LK + ++ E + +WK TLLD Q+LEK D+S+F+K+FG Sbjct 39 NIELSKNNA--VTFLKKGYSSDKEEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVN 96 Query 134 RSIEDVEPSAGVRGLRLVERYTQDTANIINNVIKLDKQKVEAFSIQYKDPKNFRVQVKIN 193 +S EDV P+ +GL E Y + I V+ + QKV F +K+ +F+VQ+ + Sbjct 97 KSKEDVTPNISAKGLYFDETYPGISGQIA-LVLGVKSQKVVNFQYSWKNNLDFKVQIHLK 155 Query 194 AKGNYKKDTVKTYL------SQVGLSDGDL-NDTGTLEAEIIYTYMPPAAS-FFSASKFD 245 G D T L S G+S+ D D + ++I+TY PP + S S F Sbjct 156 MTGIVGSDNTSTSLIKSFLASTSGVSESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFS 215 Query 246 KLTRAINFNTNLRIQIIGKDSVMTKLLQQSSFVKQLADQKFQDQSINLLPYVLYSIL 302 + +INF +++I + + LL + VK++ + F+ +SI+LLP+ Y++L Sbjct 216 SIPASINFPFDIKIDMSTSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 Lambda K H a alpha 0.317 0.132 0.365 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 32955368 Query= gi|13508383|ref|NP_110333.1| hypothetical protein MPN644 [Mycoplasma pneumoniae M129] Length=283 Score E Sequences producing significant alignments: (Bits) Value gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma ge... 292 2e-101 gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma ge... 142 6e-43 >gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=272 Score = 292 bits (748), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 147/272 (54%), Positives = 187/272 (69%), Gaps = 2/272 (1%) Query 12 LDALFLLFGTALSACSSTATNVISSLSSAQKYFDAHKSELIKKNVINLLKEGYSTDSKAT 71 L +FLL +LS S ++ L AQ YF + EL K N + LK+GYS+D + Sbjct 3 LRKIFLLPLISLSTLSVACSSTDPGLEKAQAYFQRNNIELSKNNAVTFLKKGYSSDKEEV 62 Query 72 VNSLFAGWKYTLMDQKILERNLDASRFTKAFGTNKGKDDVIPSISEKGLFLDETYSGVSQ 131 +N++FA WK TL+D ++LE+ LD SRF KAFG NK K+DV P+IS KGL+ DETY G+S Sbjct 63 INTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDETYPGISG 122 Query 132 QIAKVLGVQSQKVTGFSYSWSSTTNFKVVISFMMQGIVGSGEESNSLIKSFLSSGNNGNV 191 QIA VLGV+SQKV F YSW + +FKV I M GIVGS S SLIKSFL+S V Sbjct 123 QIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLAS--TSGV 180 Query 192 TENDFNNGNANFDGTFIFTFTPPTDGRRFAFSNFDPITGTINFPANLQIDASTTHEKLNI 251 +E+DF ANFDG IFT+TPPTD RR + S F I +INFP +++ID ST+HEKLN+ Sbjct 181 SESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFSSIPASINFPFDIKIDMSTSHEKLNL 240 Query 252 LMQNNEHVKKIKSRSFTGKSFDLLPFYFYALL 283 L+ NE VKKI++R+F GKS DLLPF++Y LL Sbjct 241 LLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 >gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=258 Score = 142 bits (358), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 98/272 (36%), Positives = 156/272 (57%), Gaps = 19/272 (7%) Query 17 LLFGTALSACS--STATNVISSLSSAQKYFDAHKSEL--IKKNVINLLKEGYSTDSKATV 72 ++ G+ ++ACS S+ TN SSL+ + F + SEL KK ++ L++ + DSK+ Sbjct 1 MVLGSLITACSNLSSGTN-FSSLNQLRNSF-SKNSELNQDKKELVTSLRDSFEVDSKSAT 58 Query 73 NSLFAGWKYTLMDQKILERNLDASRFTKAFGTNKGKDDVIPSISEKGLFLDETYS-GVSQ 131 N L W+++L D+KILE+ D SRF KAFG+ K K+DV PS KGL L E Y+ V+ Sbjct 59 NVLLDAWRFSLQDEKILEKQ-DPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVAS 117 Query 132 QIAKVLGVQSQKVTGFSYSWSSTTNFKVVISFMMQGIVGSGEESNSLIKSFLSSGNNGNV 191 I V+ + SQ VT FS+ ++S+ +FKV I G S + KS+LS + Sbjct 118 IINNVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQA-----KSYLS---QIGL 169 Query 192 TENDFNNGNANFDGTFIFTFTPPTDGRRFAFSNFDPITGTINFPANLQIDASTTHEKLNI 251 +++D + N+ IFT+TPP+ F+ S+FD + INF NL++ E + Sbjct 170 SDSDIKDKNS-ISADLIFTYTPPS-SNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQK 227 Query 252 LMQNNEHVKKIKSRSFTGKSFDLLPFYFYALL 283 L+Q+N V ++ ++F ++ DLLP+ Y++L Sbjct 228 LLQSN-FVGQLADQNFQDQTIDLLPYVLYSIL 258 Lambda K H a alpha 0.317 0.132 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30502062 Query= gi|13508384|ref|NP_110334.1| hypothetical protein MPN645 [Mycoplasma pneumoniae M129] Length=283 Score E Sequences producing significant alignments: (Bits) Value gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma ge... 287 2e-99 gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma ge... 150 4e-46 >gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=272 Score = 287 bits (735), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 149/284 (52%), Positives = 188/284 (66%), Gaps = 13/284 (5%) Query 1 MKLKLKFLLISLLGSSLLLSACSSAATQVISSLSSAQKYFESSQGELNKKNVIKILKEGY 60 MKL+ K L+ L+ S L ACSS L AQ YF+ + EL+K N + LK+GY Sbjct 1 MKLR-KIFLLPLISLSTLSVACSSTD----PGLEKAQAYFQRNNIELSKNNAVTFLKKGY 55 Query 61 ESDANKAVHALLAGWKYTLMDQQLLSKEVD-SRFIKAFGSGRDKGDVTPSVSEKGLYLNE 119 SD + ++ + A WK TL+D QLL K +D SRF KAFG + K DVTP++S KGLY +E Sbjct 56 SSDKEEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDE 115 Query 120 TYTGFSSQIAKVLGVQSQTVKQFNYKWSSNSDFKVQIQISMKGKVGSDSESQQLIKSFLS 179 TY G S QIA VLGV+SQ V F Y W +N DFKVQI + M G VGSD+ S LIKSFL+ Sbjct 116 TYPGISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLA 175 Query 180 SDNNGSNQNGGVKETDFNGDSANFDGFFTFTYTPPTQSRKFGATSFDPLTTKINFPADLQ 239 S GV E+DF GD ANFDG FTYTPPT +R+ ++F + INFP D++ Sbjct 176 S-------TSGVSESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFSSIPASINFPFDIK 228 Query 240 IDVSTTHQKLNTLMEANEQVKQIKSRKFTGKTFDLLPFFYYALL 283 ID+ST+H+KLN L+ NEQVK+I++R F GK+ DLLPFFYY LL Sbjct 229 IDMSTSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 >gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=258 Score = 150 bits (379), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/276 (37%), Positives = 158/276 (57%), Gaps = 23/276 (8%) Query 12 LLGSSLLLSACSSAATQV-ISSLSSAQKYFESSQGELN--KKNVIKILKEGYESDANKAV 68 +LGS L++ACS+ ++ SSL+ + F S ELN KK ++ L++ +E D+ A Sbjct 2 VLGS--LITACSNLSSGTNFSSLNQLRNSF-SKNSELNQDKKELVTSLRDSFEVDSKSAT 58 Query 69 HALLAGWKYTLMDQQLLSKEVDSRFIKAFGSGRDKGDVTPSVSEKGLYLNETYT-GFSSQ 127 + LL W+++L D+++L K+ SRF+KAFGSG+ K DV PS KGL L E YT +S Sbjct 59 NVLLDAWRFSLQDEKILEKQDPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASI 118 Query 128 IAKVLGVQSQTVKQFNYKWSSNSDFKVQIQISMKGKVGSDSESQQLIKSFLSSDNNGSNQ 187 I V+ + SQTV F++ ++S+ DFKVQI++ G S KS+LS Sbjct 119 INNVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQA-----KSYLS-------- 165 Query 188 NGGVKETDFNGDSANFDGFFTFTYTPPTQSRKFGATSFDPLTTKINFPADLQIDVSTTHQ 247 G+ ++D D + FTYTPP+ S F +SFD L KINF +L++ + + Sbjct 166 QIGLSDSDIK-DKNSISADLIFTYTPPS-SNLFSKSSFDTLLRKINFNTNLRLQIIGKDE 223 Query 248 KLNTLMEANEQVKQIKSRKFTGKTFDLLPFFYYALL 283 + L+++N V Q+ + F +T DLLP+ Y++L Sbjct 224 LMQKLLQSNF-VGQLADQNFQDQTIDLLPYVLYSIL 258 Lambda K H a alpha 0.313 0.129 0.354 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30502062 Query= gi|13508385|ref|NP_110335.1| hypothetical protein MPN646 [Mycoplasma pneumoniae M129] Length=277 Score E Sequences producing significant alignments: (Bits) Value gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma ge... 298 5e-104 gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma ge... 108 6e-30 >gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=258 Score = 298 bits (763), Expect = 5e-104, Method: Compositional matrix adjust. Identities = 147/261 (56%), Positives = 194/261 (74%), Gaps = 3/261 (1%) Query 17 LLLGTAFTACSNYDFQANLTSLNQLRTSANKDINLTQDKNTLIDALKTAFENNSEGTTKV 76 ++LG+ TACSN N +SLNQLR S +K+ L QDK L+ +L+ +FE +S+ T V Sbjct 1 MVLGSLITACSNLSSGTNFSSLNQLRNSFSKNSELNQDKKELVTSLRDSFEVDSKSATNV 60 Query 77 LLDAWKFSLYDAKILEKQDPVKFVKAFGSGKSKEDIEPSAGVRGLRFVERFGDNTASLIK 136 LLDAW+FSL D KILEKQDP +FVKAFGSGKSKED+EPS GV+GLR VER+ N AS+I Sbjct 61 LLDAWRFSLQDEKILEKQDPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASIIN 120 Query 137 NAILLDQQKVEVFNIRFKSSRDFTIQIKLNAKGNYKKSEVEKYKSQIGVQDNELGDKEEG 196 N I L Q V F+ + SSRDF +QI+L A G + ++ + Y SQIG+ D+++ DK Sbjct 121 NVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQAKSYLSQIGLSDSDIKDK--N 178 Query 197 TLEADLIFTYTPPASNLFSKSNFDKLTKSINFNTNLKLEMVGKDEVMRKILNSSAFTNNL 256 ++ ADLIFTYTPP+SNLFSKS+FD L + INFNTNL+L+++GKDE+M+K+L S+ F L Sbjct 179 SISADLIFTYTPPSSNLFSKSSFDTLLRKINFNTNLRLQIIGKDELMQKLLQSN-FVGQL 237 Query 257 ASVNYPNQAVNLLPYVLYSIL 277 A N+ +Q ++LLPYVLYSIL Sbjct 238 ADQNFQDQTIDLLPYVLYSIL 258 >gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=272 Score = 108 bits (270), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/276 (30%), Positives = 141/276 (51%), Gaps = 22/276 (8%) Query 15 LFLL----LGTAFTACSNYDFQANLTSLNQLRTSANKDINLTQDKNTLIDALKTAFENNS 70 +FLL L T ACS+ D L + + ++ N+ KN + LK + ++ Sbjct 6 IFLLPLISLSTLSVACSSTD-----PGLEKAQAYFQRN-NIELSKNNAVTFLKKGYSSDK 59 Query 71 EGTTKVLLDAWKFSLYDAKILEKQ-DPVKFVKAFGSGKSKEDIEPSAGVRGLRFVERFGD 129 E + +WK +L D ++LEK D +F KAFG KSKED+ P+ +GL F E + Sbjct 60 EEVINTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDETY-P 118 Query 130 NTASLIKNAILLDQQKVEVFNIRFKSSRDFTIQIKLNAKG-----NYKKSEVEKY-KSQI 183 + I + + QKV F +K++ DF +QI L G N S ++ + S Sbjct 119 GISGQIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLASTS 178 Query 184 GVQDNEL-GDKEEGTLEADLIFTYTPPASN-LFSKSNFDKLTKSINFNTNLKLEMVGKDE 241 GV +++ GDK + D+IFTYTPP N S+S F + SINF ++K++M E Sbjct 179 GVSESDFTGDK--ANFDGDVIFTYTPPTDNRRVSESTFSSIPASINFPFDIKIDMSTSHE 236 Query 242 VMRKILNSSAFTNNLASVNYPNQAVNLLPYVLYSIL 277 + +L+++ + + + ++++LLP+ Y++L Sbjct 237 KLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 Lambda K H a alpha 0.314 0.131 0.359 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 29646864 Query= gi|13508386|ref|NP_110336.1| hypothetical protein MPN647 [Mycoplasma pneumoniae M129] Length=290 Score E Sequences producing significant alignments: (Bits) Value gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma ge... 296 1e-102 gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma ge... 140 5e-42 >gi|12045298|ref|NP_073109.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=272 Score = 296 bits (757), Expect = 1e-102, Method: Compositional matrix adjust. Identities = 152/280 (54%), Positives = 192/280 (69%), Gaps = 11/280 (4%) Query 12 LGSLFFLFGTALSACSSATTEVISSFSSAQKYFSANKKELNKRNLVTILKDSYNSDPKST 71 L +F L +LS S A + AQ YF N EL+K N VT LK Y+SD + Sbjct 3 LRKIFLLPLISLSTLSVACSSTDPGLEKAQAYFQRNNIELSKNNAVTFLKKGYSSDKEEV 62 Query 72 VNSLLAGWKYSLLDQKLLENPMDPSRFSKAFGSN-TKDDVNPNISEKGLYLAETYPGVSS 130 +N++ A WK +LLD +LLE P+D SRF+KAFG N +K+DV PNIS KGLY ETYPG+S Sbjct 63 INTVFASWKTTLLDYQLLEKPLDYSRFAKAFGVNKSKEDVTPNISAKGLYFDETYPGISG 122 Query 131 QIAQVLGVQSQKVTGFSYSWTSKTKFEVKILIKMKGKVGSDGTSQTLIKSFLGTDSKGSG 190 QIA VLGV+SQKV F YSW + F+V+I +KM G VGSD TS +LIKSFL + S Sbjct 123 QIALVLGVKSQKVVNFQYSWKNNLDFKVQIHLKMTGIVGSDNTSTSLIKSFLASTS---- 178 Query 191 SNNQNGGVTEKDFEGDQANFDGNFIFTYTQPSDGRRLASNNFDPITGTINFPADLQIEVS 250 GV+E DF GD+ANFDG+ IFTYT P+D RR++ + F I +INFP D++I++S Sbjct 179 ------GVSESDFTGDKANFDGDVIFTYTPPTDNRRVSESTFSSIPASINFPFDIKIDMS 232 Query 251 TSHEKLNTLMTTNTQVGMIKNRSFKGKSFNLLPFFYYALL 290 TSHEKLN L++TN QV I+ R+FKGKS +LLPFFYY LL Sbjct 233 TSHEKLNLLLSTNEQVKKIRTRTFKGKSIDLLPFFYYTLL 272 >gi|12045299|ref|NP_073110.1| lipoprotein, putative [Mycoplasma genitalium G-37] Length=258 Score = 140 bits (353), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 157/279 (56%), Gaps = 26/279 (9%) Query 17 FLFGTALSACSSATTEV-ISSFSSAQKYFSANKKELN--KRNLVTILKDSYNSDPKSTVN 73 + G+ ++ACS+ ++ SS + + FS N ELN K+ LVT L+DS+ D KS N Sbjct 1 MVLGSLITACSNLSSGTNFSSLNQLRNSFSKNS-ELNQDKKELVTSLRDSFEVDSKSATN 59 Query 74 SLLAGWKYSLLDQKLLENPMDPSRFSKAFGS-NTKDDVNPNISEKGLYLAETY-PGVSSQ 131 LL W++SL D+K+LE DPSRF KAFGS +K+DV P+ KGL L E Y V+S Sbjct 60 VLLDAWRFSLQDEKILE-KQDPSRFVKAFGSGKSKEDVEPSTGVKGLRLVERYTQNVASI 118 Query 132 IAQVLGVQSQKVTGFSYSWTSKTKFEVKILIKMKGKVGSDGTSQTLIKSFLGTDSKGSGS 191 I V+ + SQ VT FS+ + S F+V+I ++ G S KS+L Sbjct 119 INNVIKLSSQTVTDFSFYYNSSRDFKVQIRLQATGTFDSAQA-----KSYLS-------- 165 Query 192 NNQNGGVTEKDFEGDQANFDGNFIFTYTQPSDGRRLASNNFDPITGTINFPADLQIEVST 251 G+++ D + D+ + + IFTYT PS + ++FD + INF +L++++ Sbjct 166 ---QIGLSDSDIK-DKNSISADLIFTYTPPS-SNLFSKSSFDTLLRKINFNTNLRLQIIG 220 Query 252 SHEKLNTLMTTNTQVGMIKNRSFKGKSFNLLPFFYYALL 290 E + L+ +N VG + +++F+ ++ +LLP+ Y++L Sbjct 221 KDELMQKLLQSNF-VGQLADQNFQDQTIDLLPYVLYSIL 258 Lambda K H a alpha 0.312 0.129 0.358 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31250780 Query= gi|13508387|ref|NP_110337.1| hypothetical protein MPN648 [Mycoplasma pneumoniae M129] Length=136 Score E Sequences producing significant alignments: (Bits) Value gi|12045300|ref|NP_073111.1| hypothetical protein MG441 [Mycoplas... 57.8 2e-13 >gi|12045300|ref|NP_073111.1| hypothetical protein MG441 [Mycoplasma genitalium G-37] Length=136 Score = 57.8 bits (138), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/104 (38%), Positives = 62/104 (60%), Gaps = 3/104 (3%) Query 30 LFKLFNFRVTHSLNNYYTFNLLIKAWRSIKNDFSSLNNFVFFIERQVHNFIGLLIEQPSI 89 LF+ F R H L N + LL++ ++ + ++ + N FFI+ Q+ N +G+ + + SI Sbjct 33 LFRNFGKRFKHFLFNQTSLYLLVRLFQKTEIVWNLIANIHFFIKTQIQN-LGIRLSRESI 91 Query 90 EEDNQPEVIEETPKLEIVVVIEKEVINSKLSDYFCFFKYRSLFF 133 + V + + + + E+EVINSKLSDYFCFFKYR+L F Sbjct 92 SNETFQAV--KLFHVNNLGLQEQEVINSKLSDYFCFFKYRNLLF 133 Lambda K H a alpha 0.328 0.143 0.410 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10798154 Query= gi|13508388|ref|NP_110338.1| hypothetical protein MPN649 [Mycoplasma pneumoniae M129] Length=136 ***** No hits found ***** Lambda K H a alpha 0.324 0.139 0.414 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 10798154 Query= gi|13508389|ref|NP_110339.1| hypothetical protein MPN650 [Mycoplasma pneumoniae M129] Length=101 ***** No hits found ***** Lambda K H a alpha 0.306 0.120 0.334 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6357851 Query= gi|13508390|ref|NP_110340.1| similar to mannitol-specific PRS EIIBC [Mycoplasma pneumoniae M129] Length=379 ***** No hits found ***** Lambda K H a alpha 0.324 0.141 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 43311867 Query= gi|13508391|ref|NP_110341.1| mannitol-1-phosphate 5-dehyrogenase (EC 1.1.1.17) [Mycoplasma pneumoniae M129] Length=364 ***** No hits found ***** Lambda K H a alpha 0.319 0.135 0.378 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 41195652 Query= gi|13508392|ref|NP_110342.1| PTS system mannitol-specific component IIA (EIIA-MTL) [Mycoplasma pneumoniae M129] Length=143 ***** No hits found ***** Lambda K H a alpha 0.321 0.140 0.393 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11634960 Query= gi|13508393|ref|NP_110343.1| hypothetical protein MPN654 [Mycoplasma pneumoniae M129] Length=129 ***** No hits found ***** Lambda K H a alpha 0.317 0.134 0.397 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 9955540 Query= gi|13508394|ref|NP_110344.1| hypothetical protein MPN655 [Mycoplasma pneumoniae M129] Length=204 ***** No hits found ***** Lambda K H a alpha 0.306 0.130 0.359 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 19869930 Query= gi|13508395|ref|NP_110345.1| similar to GTP-binding protein [Mycoplasma pneumoniae M129] Length=271 Score E Sequences producing significant alignments: (Bits) Value gi|12045301|ref|NP_073112.1| hypothetical protein MG442 [Mycoplas... 383 2e-137 >gi|12045301|ref|NP_073112.1| hypothetical protein MG442 [Mycoplasma genitalium G-37] Length=270 Score = 383 bits (983), Expect = 2e-137, Method: Compositional matrix adjust. Identities = 193/271 (71%), Positives = 227/271 (84%), Gaps = 1/271 (0%) Query 1 MDTFTSAVKINWFPGHMKKTHDQLKKLASSLDGVIEVVDARAPTLTQNPEITAYFTNKPK 60 MDT+TSA KINWFPGHMKK HDQLKKL+S +DG+IE+VDARAPTLT N EI +YF NKPK Sbjct 1 MDTYTSA-KINWFPGHMKKIHDQLKKLSSQIDGIIEIVDARAPTLTHNSEIISYFLNKPK 59 Query 61 LTLALKADLAQTVANSNILWGTLKQGLQLKRLVIKKLQTLFQAKKNQLKAKGLLVHQFRL 120 L LALK DLAQ N IL+G+LK+ +LK+ V+K L TLF K+ QLKAKGLL+ QFRL Sbjct 60 LILALKTDLAQYKPNKKILFGSLKEPFKLKKKVLKTLTTLFANKRQQLKAKGLLIKQFRL 119 Query 121 AVIGMPNVGKSSLINLLLNKNHLQVANRAGVTKSMSWNQISSEFYLSDTPGVFFKRIDEM 180 AVIGMPNVGKSSLINLL+NKNHL+VANRAG+TKS++W QIS E LSDTPGVF KRIDE+ Sbjct 120 AVIGMPNVGKSSLINLLINKNHLKVANRAGITKSLNWIQISPELLLSDTPGVFLKRIDEI 179 Query 181 AVGYKLVLTNVIKREVVPLEDVGAFAFCYLSKHYPQLLPYEGTDFTEFLHKFAISRKLLQ 240 +GYKLVLTNVI+REVV +E+VG FAF YL KHY QLLP+E F FL KFA R L++ Sbjct 180 QIGYKLVLTNVIRREVVNIEEVGMFAFNYLKKHYKQLLPFEADSFINFLEKFAKVRGLIK 239 Query 241 KSNQLNINLACELFVSELINGKYGKLSFELD 271 K+N+LN NLACE+F++ELINGKYGKLS+EL+ Sbjct 240 KANELNTNLACEIFINELINGKYGKLSYELN 270 Lambda K H a alpha 0.320 0.135 0.387 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28791666 Query= gi|13508396|ref|NP_110346.1| hypothetical protein MPN657 [Mycoplasma pneumoniae M129] Length=401 Score E Sequences producing significant alignments: (Bits) Value gi|12045302|ref|NP_073113.1| hypothetical protein MG443 [Mycoplas... 603 0.0 gi|12045292|ref|NP_073103.1| hypothetical protein MG432 [Mycoplas... 211 2e-66 >gi|12045302|ref|NP_073113.1| hypothetical protein MG443 [Mycoplasma genitalium G-37] Length=395 Score = 603 bits (1554), Expect = 0.0, Method: Compositional matrix adjust. Identities = 292/390 (75%), Positives = 344/390 (88%), Gaps = 3/390 (1%) Query 11 KDQDKTETTSASKRAKITSSLLMFSALYEAKKPLKYTIVYILALVNAFFLLVFIQQTGLY 70 K + K S SKR +I++S LMFS LYEAKKPLKY +VY+L+++NAF LL+FIQ+TGLY Sbjct 9 KKESKITVASGSKRVRISNSFLMFSNLYEAKKPLKYVLVYLLSIINAFLLLIFIQKTGLY 68 Query 71 SFGISSLTQGFARLLFVLLKNLEDGQRNLVFNIFYWLFYVIVNIPLIIFSYKKIGKRFTI 130 SFGISSLTQGFARL+FVLLK+ ++ QR L+FNI YWL YV +NIPLIIFSYKKIGK FTI Sbjct 69 SFGISSLTQGFARLVFVLLKSFDETQRLLIFNILYWLLYVFINIPLIIFSYKKIGKNFTI 128 Query 131 LSTHYVVASNVFGFIFSIIPGANQLPSMLSAVHHTEFWEDAKKAEGVDQSALFVPFLWND 190 LSTH+VVASNVFGF+ SIIPG++ LP ML+++ T FW K A+ ++QSA FVPFLW+D Sbjct 129 LSTHFVVASNVFGFLISIIPGSDNLPPMLASITDTNFW---KAAKDLNQSAGFVPFLWSD 185 Query 191 TSQGNVIISTFIYAGIYGFVNGTSLAILYILGSCAGGADFLTQYFARKKNRSVGPILFYV 250 TSQGNVIISTFIYA IYGF NG S+++LYILG AGGADFLTQY+ARKKNRSVG ILFYV Sbjct 186 TSQGNVIISTFIYAAIYGFYNGISVSLLYILGGSAGGADFLTQYYARKKNRSVGSILFYV 245 Query 251 NTFILIIAILMGSFVAGSIVLQDIPDYKKSAWQVNLFFSPNLIATFFSVLFTGTVVSHLF 310 N+FILIIAIL+GSFVAGS++LQD+ +Y+ SAW+V+LFFSPNLIATFFS+L TGTVVS+LF Sbjct 246 NSFILIIAILIGSFVAGSLLLQDVNNYRDSAWEVSLFFSPNLIATFFSILLTGTVVSYLF 305 Query 311 PRYNFAEIKVFTDKIEEVRLALLNDKATHSLSIQETMGGYSLAKKRMIVSVTMYVEIPNL 370 PRYNFAEIKVFTDK+EEVR ALL+D A HSLSIQET+GGYSL KK+MIVSV+MYVEIP+L Sbjct 306 PRYNFAEIKVFTDKLEEVRKALLSDNANHSLSIQETLGGYSLLKKKMIVSVSMYVEIPHL 365 Query 371 IRIIRKIDKDCLVSITRIRGIDGYIYLRSQ 400 I+IIR+IDKDCLVSITRIRGIDG+IYLR Sbjct 366 IKIIRQIDKDCLVSITRIRGIDGHIYLRQN 395 >gi|12045292|ref|NP_073103.1| hypothetical protein MG432 [Mycoplasma genitalium G-37] Length=398 Score = 211 bits (537), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 216/384 (56%), Gaps = 16/384 (4%) Query 24 RAKITSSLLMFSALYEAKKP-LKYTIVYILALVNAFFLLVFIQQTGLYSFGISSLTQGFA 82 R ++ S L F ++Y KK L+ I+ I+A ++F+Q +GLY G++S++QG A Sbjct 14 RIHLSGSFLKFQSIYNLKKLYLQLVILTIVAFFWGLLGVIFVQFSGLYDIGMASISQGLA 73 Query 83 RLL--FVLLKNLEDGQRNLVFNIFYWLFYVIVNIPLIIFSYKKIGKRFTILSTHYVVASN 140 RL+ F+ +N+ +FN +WL ++ N+P IF + KI K+FT+L+ ++V SN Sbjct 74 RLVNFFITSQNINVDSAT-IFNAIFWLTQILFNVPFFIFGWFKISKKFTLLTLYFVAVSN 132 Query 141 VFGFIFSIIPGANQ--LPSMLSAVHHTEFWEDAKKAEGVDQSALFVPFLWNDTSQGNVII 198 +FGF FS IPG + L + L+ F E+ +GV W +++ V Sbjct 133 LFGFFFSYIPGIDNFFLFANLTTAKDGGF-ENLINEKGVQ------LIFWEKSAEKQV-- 183 Query 199 STFIYAGIYGFVNGTSLAILYILGSCAGGADFLTQYFARKKNRSVGPILFYVNTFILIIA 258 S Y I+GF+ +++ I+ + GG DFL +++ KK + +G IL +NT II Sbjct 184 SLLFYGLIWGFLQAVFYSVILIIDASTGGLDFLAFWYSEKKYKDIGGILMLINTVSFIIG 243 Query 259 ILMGSFVAGSIVLQD-IPDYKKSAWQVNLFFSPNLIATFFSVLFTGTVVSHLFPRYNFAE 317 ++G+++ GS+ +Q + D K + V F SPNL+ T + G S FP+Y F + Sbjct 244 YVIGTYLTGSLSVQSYVGDDKHQPFGVAFFLSPNLVFTLLMNIVLGLFTSFYFPKYQFVK 303 Query 318 IKVFTDKIEEVRLALLNDKATHSLSIQETMGGYSLAKKRMIVSVTMYVEIPNLIRIIRKI 377 ++V+ IE++R LL+++ S+++ E GGYS K +++V+ + ++ L+ +RK Sbjct 304 VEVYGKHIEKIRNYLLDNQQWFSITMFEAEGGYSRQKTQVLVTNCLLIKAAKLLEDVRKF 363 Query 378 DKDCLVSITRIRGIDGYIYLRSQD 401 D+D L SIT I+ +DGYIY R + Sbjct 364 DRDALFSITFIKKLDGYIYDRRTN 387 Lambda K H a alpha 0.328 0.141 0.419 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 46415649 Query= gi|13508397|ref|NP_110347.1| ribosomal protein L19 [Mycoplasma pneumoniae M129] Length=119 Score E Sequences producing significant alignments: (Bits) Value gi|12045303|ref|NP_073114.1| ribosomal protein L19 (rpL19) [Mycop... 219 2e-77 >gi|12045303|ref|NP_073114.1| ribosomal protein L19 (rpL19) [Mycoplasma genitalium G-37] Length=119 Score = 219 bits (558), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 107/118 (91%), Positives = 114/118 (97%), Gaps = 0/118 (0%) Query 1 MKKINKQALIDLVEQKQLKAYVPEFSAGDEVNVAIKLKEKEKVRIQNFTGTVLRRRGKGI 60 MKKINKQALID VEQKQLK YVPEF AGDEVNVAIKL+EKEKVR+QNFTGTVLRRRG+GI Sbjct 1 MKKINKQALIDAVEQKQLKEYVPEFGAGDEVNVAIKLREKEKVRVQNFTGTVLRRRGRGI 60 Query 61 SETFIVRKTTDGIPIEKNFQIHNPNISIELKRRGKVRRAYISYMRERSGKAAKIKERK 118 SETF+VRKTTDGIPIEKNFQIHNPNI IE+KRRGKVRRAYISYMRERSGK+AKIKE+K Sbjct 61 SETFMVRKTTDGIPIEKNFQIHNPNIDIEVKRRGKVRRAYISYMRERSGKSAKIKEKK 118 Lambda K H a alpha 0.317 0.134 0.357 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8666451 Query= gi|13508398|ref|NP_110348.1| tRNA (guanine-N1)-methyltransferase [Mycoplasma pneumoniae M129] Length=210 Score E Sequences producing significant alignments: (Bits) Value gi|12045304|ref|NP_073115.1| tRNA (guanine-N1)-methyltransferase ... 344 7e-124 >gi|12045304|ref|NP_073115.1| tRNA (guanine-N1)-methyltransferase (trmD) [Mycoplasma genitalium G-37] Length=231 Score = 344 bits (883), Expect = 7e-124, Method: Compositional matrix adjust. Identities = 161/210 (77%), Positives = 185/210 (88%), Gaps = 0/210 (0%) Query 1 MAQAQKAKLVEFEVINWRQYCKDKHQTVDDMAYGGGGGMVLKAEPILKALKACRTPQSKV 60 M QAQKA LV+FEV+NWR +C DKH+TVDDMAYGGG GMVLKAEPI+ L + P S V Sbjct 22 MLQAQKANLVQFEVVNWRNFCNDKHKTVDDMAYGGGSGMVLKAEPIINCLNFYKAPNSHV 81 Query 61 VLLSPEGQQFSQPMAQALTQTEHLILICGHYEGFDYRLYKHVDQIISLGDFVLSGGELVA 120 VLLSPEG+QFSQ A+ LT+ EHLIL+ GHYEGFD R+YK++DQI+SLGDFVLSGGELVA Sbjct 82 VLLSPEGEQFSQNCAKKLTKYEHLILLSGHYEGFDQRIYKYIDQIVSLGDFVLSGGELVA 141 Query 121 LSVIDATVRLIKGVINDQSLIHESFNNYLLDFPAYTRPYDLDGDKVPEILLSGDHKKIEA 180 LSVIDATVRLIKGVINDQSLI ESFN+ LLDFP YTRPYDL GDKVPE+LLSGDH+KIE+ Sbjct 142 LSVIDATVRLIKGVINDQSLICESFNDNLLDFPVYTRPYDLKGDKVPEVLLSGDHQKIES 201 Query 181 YRKEQQLLRTAQYRPDLYKQYLAKKDEKNK 210 +RKEQQ+L+TA+YRPDLYK+YL K+EKNK Sbjct 202 FRKEQQILKTAKYRPDLYKKYLENKNEKNK 231 Lambda K H a alpha 0.319 0.137 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 20520643 Query= gi|13508399|ref|NP_110349.1| ribosomal protein S16 [Mycoplasma pneumoniae M129] Length=88 Score E Sequences producing significant alignments: (Bits) Value gi|12045305|ref|NP_073116.1| ribosomal protein S16 (rps16) [Mycop... 156 1e-53 >gi|12045305|ref|NP_073116.1| ribosomal protein S16 (rps16) [Mycoplasma genitalium G-37] Length=89 Score = 156 bits (395), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 72/82 (88%), Positives = 78/82 (95%), Gaps = 0/82 (0%) Query 1 MRMGRVHYPTYRIVAVDSRVKRDGKYIALIGHLNPALKENKCKIDEAVALEWLNKGAKPT 60 MRMGRVHYP YRIVAVDSRVKR+GKYIALIGHLNPALKENKCK+DE VAL+WLNKGA PT Sbjct 1 MRMGRVHYPLYRIVAVDSRVKRNGKYIALIGHLNPALKENKCKLDETVALDWLNKGAIPT 60 Query 61 DTVRSLFSQTGLWKKFVESKKK 82 DTVRSLFS++GLWKKF+ESK K Sbjct 61 DTVRSLFSESGLWKKFIESKNK 82 Lambda K H a alpha 0.318 0.133 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4762400 Query= gi|13508400|ref|NP_110350.1| hypothetical protein MPN661 [Mycoplasma pneumoniae M129] Length=549 Score E Sequences producing significant alignments: (Bits) Value gi|12045306|ref|NP_073117.1| hypothetical protein MG447 [Mycoplas... 775 0.0 >gi|12045306|ref|NP_073117.1| hypothetical protein MG447 [Mycoplasma genitalium G-37] Length=547 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/549 (68%), Positives = 456/549 (83%), Gaps = 2/549 (0%) Query 1 MDSQQDRLAKQVLIQKSFESKRLFLTILRFAIPTFFFALFSAAYVFVDQIMVIKFVPHGP 60 M+S++DR KQ+LI+ FESK+LFLTILRF +PTFFFALFSAAYVF+DQIMVIKFVP Sbjct 1 MNSKRDRFEKQLLIKNVFESKQLFLTILRFTVPTFFFALFSAAYVFIDQIMVIKFVPRSE 60 Query 61 LNPDSIFTDQALIEEFKASAFYKGGDIPNHTELTASQLVKTVLNISQPIVVILNAITIFV 120 LNPDSIFTDQ+LI+EFK SAFYK + + L Q +KTVLNISQP++V+LNAI IF+ Sbjct 61 LNPDSIFTDQSLIDEFKNSAFYKSDSFLS-SGLNIKQFIKTVLNISQPLIVLLNAINIFI 119 Query 121 PLGTGVIFSKTIGKGDEKKIKDAWNTGLVSTTLFALVTQIIVLAIAKEWLQFNLDKVDEQ 180 PLGTGVIFSK IG+ D+ KI++AWNTGL+STT+F L+TQ +VL+ AKEWL +NLD+ + Sbjct 120 PLGTGVIFSKAIGRNDQNKIQEAWNTGLISTTVFGLITQFLVLSFAKEWLHYNLDQSSFE 179 Query 181 HHVQVADQFQHFFNEKAVAIGSEYVYILIGFNIIPMLSRLFFYLGQSEGRQLFIAIVPPL 240 + Q A+ FQ FFN+KA+ + SEYVYILIG NIIPMLSRLFFYL QSEGRQLFIAIVPP+ Sbjct 180 QNFQ-ANSFQQFFNKKAIDVASEYVYILIGLNIIPMLSRLFFYLAQSEGRQLFIAIVPPI 238 Query 241 SNLLNVLFVFLLVRFSTLGVVGSAVAAILVYFITFMAYVVYLISLNKRGLTYLSLRDFSF 300 +NL+N+L VFLLVR+S+LGV+GSAVA IL Y I F+AY++YLI LNKR LTYL+ + Sbjct 239 ANLINILIVFLLVRYSSLGVIGSAVAGILGYLINFLAYIIYLIYLNKRNLTYLTFKTIKL 298 Query 301 KRVSFNLFLVISMVGLASFFRNGSLSILNTFYESFLVNLTKTLTDQSDTFYLVLLTGPIA 360 ++ FNL +V+S++G+ASFFRNGSLSI+ TFYESFLVNLTK TD++D FYL LLTGPIA Sbjct 299 NKIDFNLLVVVSLIGMASFFRNGSLSIVTTFYESFLVNLTKATTDKNDVFYLTLLTGPIA 358 Query 361 IANLTSAAIFGVLQGVRTVVSYKFGQGQLADIKRINVYTLLVCLVFAALLYLILAVGLGK 420 I+NL SAAIFG+LQGVRTV SYKFGQ + +IK+IN+YT+++C+ F +L+YL+ AV GK Sbjct 359 ISNLASAAIFGLLQGVRTVSSYKFGQKKYDEIKKINIYTVIICISFGSLIYLLTAVAFGK 418 Query 421 EILVHLFDTSAATLMLANQFSLIVQAQVFFVAIGATSQQYFQNNNRVLYSWIVSLMQGVI 480 +IL FD S L LAN FSLIVQAQVFFVA GA SQQYFQN NRVLYSWIVSL G+ Sbjct 419 QILSSFFDVSDQNLDLANYFSLIVQAQVFFVATGANSQQYFQNTNRVLYSWIVSLTHGLF 478 Query 481 VFVPLLFIFQAITLQTKNIEIFIWLLTANAALAGLINVLIGQVHIHFFMDKYFAQKHKSR 540 VF+PLLFIFQAITLQT NIE+FIWLLTANAALAGLIN+ GQ+H + FMDKYFA +++ Sbjct 479 VFIPLLFIFQAITLQTNNIEVFIWLLTANAALAGLINIAFGQIHTNLFMDKYFANPPQNK 538 Query 541 IVQFIERYS 549 +V+FIE+YS Sbjct 539 LVKFIEKYS 547 Lambda K H a alpha 0.330 0.143 0.408 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 66184146 Query= gi|13508401|ref|NP_110351.1| hypothetical protein MPN662 [Mycoplasma pneumoniae M129] Length=151 Score E Sequences producing significant alignments: (Bits) Value gi|12045307|ref|NP_073118.1| hypothetical protein MG448 [Mycoplas... 273 6e-98 >gi|12045307|ref|NP_073118.1| hypothetical protein MG448 [Mycoplasma genitalium G-37] Length=150 Score = 273 bits (699), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 127/148 (86%), Positives = 137/148 (93%), Gaps = 0/148 (0%) Query 1 MSKYQKKSDGELKRTLTKLQYDVTQNAHTEPPYTNEYNRHYEKGIYVDITSGEPLFISTD 60 MSKYQKKS+ ELKRTLTKLQ+DVTQNAHTEPPY NEYNR++EKGIYVDITSGEPLFISTD Sbjct 1 MSKYQKKSEAELKRTLTKLQFDVTQNAHTEPPYINEYNRNFEKGIYVDITSGEPLFISTD 60 Query 61 KFKSGCGWPAFTKPISQDLIANYRDESHGMIRTEVRAKNSNSHLGHVFRDGPEEHGGLRY 120 KFKSGCGWPAF+KPI ++LIANYRDESHGMIRTEVRAKNS+SHLGHVF DGP E GGLRY Sbjct 61 KFKSGCGWPAFSKPIDKNLIANYRDESHGMIRTEVRAKNSDSHLGHVFNDGPSELGGLRY 120 Query 121 CINSAALKFIPFAEMESAGYGEYLKLFK 148 CINSAALKFIPF EME GY +Y+ LFK Sbjct 121 CINSAALKFIPFEEMEKLGYKDYIHLFK 148 Lambda K H a alpha 0.315 0.133 0.399 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 12798456 Query= gi|13508402|ref|NP_110352.1| hypothetical protein MPN663 [Mycoplasma pneumoniae M129] Length=234 Score E Sequences producing significant alignments: (Bits) Value gi|12045308|ref|NP_073119.1| hypothetical protein MG449 [Mycoplas... 218 7e-75 >gi|12045308|ref|NP_073119.1| hypothetical protein MG449 [Mycoplasma genitalium G-37] Length=144 Score = 218 bits (555), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 108/143 (76%), Positives = 123/143 (86%), Gaps = 2/143 (1%) Query 89 VKKISELLNYDLTPLAKKVPFVVCEVISAIPIPNTHLKRCKVNTGSNKSLDVVCGADNVR 148 +K+ISELL YDL LA KVPFVVCEV+S IPI NTHLKRCKVNTG KSLD+VCGA+NVR Sbjct 1 MKRISELLGYDLISLANKVPFVVCEVVSVIPIANTHLKRCKVNTGLTKSLDIVCGANNVR 60 Query 149 VGLKTVLVHVGGVLPDGTIIKKAKIAGYDSMGMLCSEKELNLKPKNQGIIEIKSHIKIGK 208 VG+KTVLV VGGVLP GT+IKK KIAG+DS+GMLCSEKELNLK KN+GIIEI IK+GK Sbjct 61 VGMKTVLVQVGGVLPSGTVIKKTKIAGFDSVGMLCSEKELNLKQKNEGIIEINPKIKVGK 120 Query 209 SFLDVYLNNSEKFSAWVSTKKRV 231 F+DVYLN ++ S WV+TKKRV Sbjct 121 PFIDVYLN--KQHSKWVNTKKRV 141 Lambda K H a alpha 0.322 0.138 0.407 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 23740822 Query= gi|13508403|ref|NP_110353.1| hypothetical protein MPN664 [Mycoplasma pneumoniae M129] Length=237 Score E Sequences producing significant alignments: (Bits) Value gi|12045309|ref|NP_073120.1| hypothetical protein MG450 [Mycoplas... 330 8e-118 gi|12045184|ref|NP_072995.1| hypothetical protein MG326 [Mycoplas... 58.5 5e-12 >gi|12045309|ref|NP_073120.1| hypothetical protein MG450 [Mycoplasma genitalium G-37] Length=237 Score = 330 bits (847), Expect = 8e-118, Method: Compositional matrix adjust. Identities = 158/237 (67%), Positives = 189/237 (80%), Gaps = 0/237 (0%) Query 1 MANAPKGVKFSTSQTTEEIVRAKVSELVEQYDLIIGIPIDKEISASYANWKLVEKDYASK 60 M NAPKGVKFSTSQT+EE VR KV ++ YDLIIGIPIDKEIS SY NWK+VEK++ K Sbjct 1 MINAPKGVKFSTSQTSEEEVRDKVKSIINDYDLIIGIPIDKEISTSYLNWKIVEKEFEDK 60 Query 61 FHVLDARAVEMIIDWLINDIKGWLNTNPYSREGLDRFVEQYRKKTAAVLFVTDTKPLVAG 120 FHVLD+R VE++I WLI+DIK WL N YSR GLD FV +R K A+LFVTDTKPLVAG Sbjct 61 FHVLDSRIVEVLIAWLISDIKVWLKNNQYSRAGLDEFVYNFRNKCGAILFVTDTKPLVAG 120 Query 121 GRLSNLKSFIIKSLKFHLLISFLGENGKLQFFDKARSAHDAHKLAVKFLKKQLLKHSAKL 180 GRLSNLKSFIIKS KFHLLISFLGE GKLQFF+KA+SA AHKLAV+FL+K+LLK Sbjct 121 GRLSNLKSFIIKSFKFHLLISFLGETGKLQFFNKAQSASSAHKLAVQFLEKKLLKKEVNF 180 Query 181 KRGAFLTTVFDEQTNTNLVQEFDKLLDHSINIEQSLLSPVICTHTGLNSYVIVLQGE 237 +R A LTT+F+ N + QEF LL++++++ + LLSPVICTHTG+NSY ++Q E Sbjct 181 RRAALLTTMFETDKNQLIKQEFVTLLNNAVDVSEHLLSPVICTHTGINSYAFLIQTE 237 >gi|12045184|ref|NP_072995.1| hypothetical protein MG326 [Mycoplasma genitalium G-37] Length=295 Score = 58.5 bits (140), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/242 (24%), Positives = 112/242 (46%), Gaps = 19/242 (8%) Query 5 PKGVKFSTSQTTEEIVRAKVSELVEQYDLIIGIPIDKEISASYANW-----KLVEKDYAS 59 P G+ STS + + E+ +YD I +P+ K +S +Y +L E++ Sbjct 56 PHGLNISTSLPRQSDLLKIFEEIKTKYDRFIFLPLSKGLSGTYDMLVQLAKELSEQNKDK 115 Query 60 KFHVLDARAVEMIIDWLINDIKGWLNTNPYSREGLDRFVEQYRKKTAAVLFVTDTKPLVA 119 +F V + + + + WL+ DIK ++ + + VE +++ + + + + + Sbjct 116 EFLVFETSDIAISLKWLVEDIKALVDKG-CDNQTIKAKVESHKQNILSAVTLKNLVQMRK 174 Query 120 GGRLSNLKSFIIKSLKFHLLISFLGENGKLQFFDKARSAHDAHKLAVKFLKKQLLKHSAK 179 GGR+S LK FI L+ +I F + G K S A + F+K + + K Sbjct 175 GGRISGLKKFITTLLRVKPIILF--DKGVNTLGAKVFSFSQAVEKIFGFVKTK-FGDNYK 231 Query 180 LKRGAFLTTVFDEQTN--TNLVQEFDKLLDHS-IN----IEQSLLSPVICTHTGLNSYVI 232 +KR F + N ++ +F ++H+ IN IE + ++ VI HTG++++ I Sbjct 232 IKRIGFCYSFCKNYANEIKKIITDF---IEHNKINFQNEIENAFITSVIIVHTGIDAFSI 288 Query 233 VL 234 L Sbjct 289 SL 290 Lambda K H a alpha 0.319 0.135 0.383 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 24169873 Query= gi|13508404|ref|NP_110354.1| elongation factor TU [Mycoplasma pneumoniae M129] Length=394 Score E Sequences producing significant alignments: (Bits) Value gi|12045310|ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplas... 787 0.0 gi|12044990|ref|NP_072800.1| GTP-binding membrane protein (lepA) ... 76.6 6e-17 gi|12044941|ref|NP_072751.1| elongation factor G (fus) [Mycoplasm... 65.9 2e-13 >gi|12045310|ref|NP_073121.1| elongation factor Tu (tuf) [Mycoplasma genitalium G-37] Length=394 Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/394 (97%), Positives = 390/394 (99%), Gaps = 0/394 (0%) Query 1 MAREKFDRSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDQIDKAPEEKARG 60 MAREKFDRSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYD+IDKAPEEKARG Sbjct 1 MAREKFDRSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDEIDKAPEEKARG 60 Query 61 ITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHI 120 ITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHI Sbjct 61 ITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHI 120 Query 121 LLARQVGVPRMVVFLNKCDIATDEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALE 180 LLARQVGVP+MVVFLNKCDIA+DEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALE Sbjct 121 LLARQVGVPKMVVFLNKCDIASDEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALE 180 Query 181 GDPKWEAKIHDLMNAVDEWIPTPEREVDKPFLLAIEDTMTITGRGTVVTGRVERGELKVG 240 GDPKWEAKIHDL+ AVDEWIPTP REVDKPFLLAIEDTMTITGRGTVVTGRVERGELKVG Sbjct 181 GDPKWEAKIHDLIKAVDEWIPTPTREVDKPFLLAIEDTMTITGRGTVVTGRVERGELKVG 240 Query 241 QEIEIVGLRPIRKAVVTGIEMFKKELDSAMAGDNAGVLLRGVDRKEVERGQVLAKPGSIK 300 QE+EIVGL+PIRKAVVTGIEMFKKELDSAMAGDNAGVLLRGV+RKEVERGQVLAKPGSIK Sbjct 241 QEVEIVGLKPIRKAVVTGIEMFKKELDSAMAGDNAGVLLRGVERKEVERGQVLAKPGSIK 300 Query 301 PHKKFKAEIYALKKEEGGRHTGFLNGYRPQFYFRTTDVTGSISLPENTEMVLPGDNTSIT 360 PHKKFKAEIYALKKEEGGRHTGFLNGYRPQFYFRTTDVTGSI+L ENTEMVLPGDN SIT Sbjct 301 PHKKFKAEIYALKKEEGGRHTGFLNGYRPQFYFRTTDVTGSIALAENTEMVLPGDNASIT 360 Query 361 VELIAPIACEKGSKFSIREGGRTVGAGSVTEVLE 394 VELIAPIACEKGSKFSIREGGRTVGAG+VTEVLE Sbjct 361 VELIAPIACEKGSKFSIREGGRTVGAGTVTEVLE 394 >gi|12044990|ref|NP_072800.1| GTP-binding membrane protein (lepA) [Mycoplasma genitalium G-37] Length=598 Score = 76.6 bits (187), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/266 (26%), Positives = 120/266 (45%), Gaps = 24/266 (9%) Query 14 NVGTIGHIDHGKTTLTAAICT-VLAKEGKSAATRYDQIDKAPEEKARGITI--NSAHVEY 70 N I HIDHGK+TL+ + L E + + +D E+ RGITI N+ ++ Sbjct 8 NFSIIAHIDHGKSTLSDRLLEHSLGFEKRLLQAQ--MLDTMEIERERGITIKLNAVELKI 65 Query 71 SSDKRHYAH--VDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHILLARQVGV 128 + D +Y +D PGH D+ + A +G +L+V AT + QT + LA + + Sbjct 66 NVDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNAYLALENNL 125 Query 129 PRMVVFLNKCDIATDEEVQELVAEEVRDLLTSYGFDGKNTPIIYGSALKALEGDPKWEAK 188 ++ +NK D+ D E + + +LL G + + ++ A Sbjct 126 -EIIPVINKIDM--DNADIETTKDSLHNLL---GVEKNSICLVSAKA----------NLG 169 Query 189 IHDLMNAVDEWIPTPEREVDKPFLLAIEDTMTITGRGTVVTGRVERGELKVGQEIEIVGL 248 I L+ + IP P+ E+++P + D+ +G V RV G LKV ++ + Sbjct 170 IDQLIQTIIAKIPPPKGEINRPLKALLFDSYYDPYKGVVCFIRVFDGCLKVNDKVRFIKS 229 Query 249 RPIRKAVVTGIEM-FKKELDSAMAGD 273 + + V G++ F ++ D AGD Sbjct 230 NSVYQIVELGVKTPFFEKRDQLQAGD 255 >gi|12044941|ref|NP_072751.1| elongation factor G (fus) [Mycoplasma genitalium G-37] Length=688 Score = 65.9 bits (159), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/128 (37%), Positives = 61/128 (48%), Gaps = 3/128 (2%) Query 14 NVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDQ--IDKAPEEKARGITINSAHVEYS 71 N G + HID GKTT + I + K T + +D +EK RGITI SA S Sbjct 12 NFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERGITITSAATSVS 71 Query 72 SDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQTREHILLARQVGVPRM 131 +D PGH D+ + +DGAI V+ A V PQT A + VPR Sbjct 72 WKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQASRYEVPR- 130 Query 132 VVFLNKCD 139 V+F+NK D Sbjct 131 VIFVNKMD 138 Lambda K H a alpha 0.316 0.134 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 45428082 Query= gi|13508405|ref|NP_110355.1| hypothetical protein MPN666 [Mycoplasma pneumoniae M129] Length=251 Score E Sequences producing significant alignments: (Bits) Value gi|12045311|ref|NP_073122.1| hypothetical protein MG452 [Mycoplas... 276 1e-95 gi|12044985|ref|NP_072795.1| hypothetical protein MG133 [Mycoplas... 54.7 1e-10 >gi|12045311|ref|NP_073122.1| hypothetical protein MG452 [Mycoplasma genitalium G-37] Length=261 Score = 276 bits (706), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 142/244 (58%), Positives = 179/244 (73%), Gaps = 3/244 (1%) Query 1 MEQNNCKIRTWFAKLALAQKVFLGVIPLFFICFVFVIADIVISLQNKGHIIEEIDKFTNQ 60 ++ NNC+I W+ +L+L QK FL IPLF + FV+ IV SL G IIE+IDKFT+Q Sbjct 11 VKTNNCQIIGWWKQLSLPQKTFLSFIPLFLVTSAFVLTGIVESLLTFGTIIEQIDKFTDQ 70 Query 61 SNVMLLIYACWYVSKPKSHYLKNQQFFLSAFAYIIFTFLGYNVILAASQQAYSDKDAYSL 120 +NVMLLIYA Y PKS LKNQQFFLSA AYI+FTF+GYN+IL+ + AY + Y L Sbjct 71 TNVMLLIYAVIYTFNPKSWLLKNQQFFLSALAYILFTFIGYNLILSIAGIAYKSTNPYKL 130 Query 121 ASSVFLHVLAPIAFLVAGIVKMKTDKDVTFNHFWKSLGYFMIYPLVYGLYLATIPYVRGH 180 SS+FLHV+APIAF +A +K+K +KDV N F+KSL FMIYPL+YGLYL TIPYVR H Sbjct 131 TSSIFLHVIAPIAFFIASFIKIKHEKDVNINMFFKSLLLFMIYPLIYGLYLVTIPYVR-H 189 Query 181 YVSDDGKSTTYVVYGEITNTKDNPIVAWPVVICFLFIYFPLSFLAVYALQCKLLNRPLKA 240 Y+ +G+ +TY +YG ITNTK+NP AW VV LFIYFPLS+LA+Y LQ KL+ + ++ Sbjct 190 YLF-NGRPSTYTIYGSITNTKNNPF-AWLVVFAVLFIYFPLSYLAIYLLQLKLIKKAIQP 247 Query 241 QFKC 244 QF Sbjct 248 QFNL 251 >gi|12044985|ref|NP_072795.1| hypothetical protein MG133 [Mycoplasma genitalium G-37] Length=228 Score = 54.7 bits (130), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 39/198 (20%) Query 41 VISLQNKGHI----IEEIDKFTNQSNVMLLIYACWYVSKPKSHYLKNQQFFLSAFAYIIF 96 +IS+ N G + D FT QSN + + +Y KS + +N LS Y++F Sbjct 6 LISVANSGQMSLIWFTNFDTFTYQSNSLAIFLVWYYFLNHKSRWFENSSLVLSVTGYLVF 65 Query 97 TFLGYNVILAA--------------------SQQAYSDKDA----YSLASSVFLHVLAPI 132 T + +N + +Q YS + ++ S + LHV+ P+ Sbjct 66 TVIFFNFYALSRFTGIVNIEPDVQGWFSTITTQLPYSFNGSFINDWNAFSELLLHVIHPL 125 Query 133 AFLVAGIVKMKTDKDVTFNHFWKSLGYFM----IYPLVYGLYLATIPYVRGHYVSDDGKS 188 + + + KT K + ++L F+ IYP +Y YL TIP++ V D+G++ Sbjct 126 FYFIYVGLLFKTYKFIKPP---RNLQSFLLKAGIYPSIYAFYLQTIPFLN---VWDNGEN 179 Query 189 TTYVVYGEITNTKDNPIV 206 +Y VYG T TK N V Sbjct 180 -SYSVYGFFTQTKYNSYV 196 Lambda K H a alpha 0.330 0.142 0.448 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26172111 Query= gi|13508406|ref|NP_110356.1| UDP-glucose pyrophosphorylase [Mycoplasma pneumoniae M129] Length=291 Score E Sequences producing significant alignments: (Bits) Value gi|12045312|ref|NP_073123.1| UTP--glucose-1-phosphate uridylyltra... 436 9e-158 >gi|12045312|ref|NP_073123.1| UTP--glucose-1-phosphate uridylyltransferase (gtaB) [Mycoplasma genitalium G-37] Length=292 Score = 436 bits (1121), Expect = 9e-158, Method: Compositional matrix adjust. Identities = 212/285 (74%), Positives = 248/285 (87%), Gaps = 1/285 (0%) Query 3 KIRKAVIPAAGLGTRLLPATKAIPKEMLPLVNKPTIQYIVEEAVASGIKEILVIVSSKKE 62 KIRKAVIPAAGLG RLLPATKAIPKEMLPLVNKPTIQYIVEEAV SGI++ILVIVSSKK Sbjct 4 KIRKAVIPAAGLGVRLLPATKAIPKEMLPLVNKPTIQYIVEEAVKSGIEQILVIVSSKKT 63 Query 63 AIIDHFDYDFILENALLQKHKDQEHQEIKDIANLAHIYFVRQKHQHGLGDAILHAKSFVG 122 AI+DHFDYD ILENAL+QK+K QEH+EI+DIANLAHI+FVRQK+Q GLGDAIL A+SFVG Sbjct 64 AILDHFDYDLILENALIQKNKLQEHKEIEDIANLAHIFFVRQKNQDGLGDAILFAESFVG 123 Query 123 NEDFAVLLGDDVVFGEQPALAQCIQAYEQTDCQVIGVQEVPHDQVNKYGIVTPEANWQKQ 182 NEDFAVLLGDDVVF ++PAL QC++AY +T+CQ IGVQEV V+KYGI+TPE +++ + Sbjct 124 NEDFAVLLGDDVVFSKEPALKQCLEAYYETNCQTIGVQEVDPCHVDKYGIITPEGDYKNK 183 Query 183 ALVKILGMVEKPAVNEAKSNLAILSRYILKPSIFTALKQVPFGVGGELQLTDGLNYCLQQ 242 L+K+L M EKP +AKSNLAIL RY+LKPSIF AL+ VP+GVGGELQLTDGLN+CL+ Sbjct 184 DLIKVLAMTEKPKPKDAKSNLAILGRYVLKPSIFKALRSVPYGVGGELQLTDGLNFCLKN 243 Query 243 GEPFFAKHFGGTRFDVGTKNGFIKANLYTALKTDAITKDEVLAIL 287 E F+A+ F GTRFDVGTK+GFIKANL+TAL I+K EVL +L Sbjct 244 -ENFYARKFTGTRFDVGTKSGFIKANLFTALNNKDISKKEVLELL 287 Lambda K H a alpha 0.320 0.138 0.396 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 31392829 Query= gi|13508407|ref|NP_110357.1| hypothetical protein MPN668 [Mycoplasma pneumoniae M129] Length=140 Score E Sequences producing significant alignments: (Bits) Value gi|12045313|ref|NP_073124.1| hypothetical protein MG454 [Mycoplas... 194 1e-66 >gi|12045313|ref|NP_073124.1| hypothetical protein MG454 [Mycoplasma genitalium G-37] Length=155 Score = 194 bits (492), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 89/140 (64%), Positives = 104/140 (74%), Gaps = 0/140 (0%) Query 1 MAVIYKTTAHASAGREGVVQTVDGFTVSLAFPKPGATHQDKNNPEQLFASAYAGCFSQAV 60 MA+IYKT A GREG V+T+DGF L+FPKP + Q +NNPEQLFASAYA CFSQAV Sbjct 16 MALIYKTVAQTETGREGSVKTLDGFQTKLSFPKPDLSVQTENNPEQLFASAYASCFSQAV 75 Query 61 RVVLQQHQLQLATQPIVGVSVELHDQDGLFHIKAGVELAITGVDQTTAQTVITAAHAMCP 120 VV+QQHQ + +P+V V VELH ++GLFHIKAGVEL DQ + +I AH MCP Sbjct 76 IVVMQQHQFSFSKKPVVSVKVELHQENGLFHIKAGVELTTNSNDQEVGKKLIQKAHEMCP 135 Query 121 FSRLIKPENFLGLTLNGAKL 140 FSRLI+ ENFLGLTLNG KL Sbjct 136 FSRLIRNENFLGLTLNGIKL 155 Lambda K H a alpha 0.320 0.132 0.380 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 11381838 Query= gi|13508408|ref|NP_110358.1| tyrosyl tRNA synthetase [Mycoplasma pneumoniae M129] Length=399 Score E Sequences producing significant alignments: (Bits) Value gi|12045314|ref|NP_073125.1| tyrosyl-tRNA synthetase (tyrS) [Myco... 520 0.0 >gi|12045314|ref|NP_073125.1| tyrosyl-tRNA synthetase (tyrS) [Mycoplasma genitalium G-37] Length=407 Score = 520 bits (1339), Expect = 0.0, Method: Compositional matrix adjust. Identities = 243/395 (62%), Positives = 307/395 (78%), Gaps = 1/395 (0%) Query 1 MTKDLLALLKERGLFVQANFEKELKQLLNQGSFAFYVGFDPTAPSLHIGNYVLLHVAQIF 60 M ++L LKER L+ QANFE EL L + FYVGFDPTA SLHIGNYVL+H+A++ Sbjct 12 MLNNILQFLKERELYSQANFETELDNHLKEKKNNFYVGFDPTANSLHIGNYVLIHIAKLL 71 Query 61 QAMGHIPHVLLGSGTALIGDPTGRMELRQMMSRETIAENTRNIKKQIRRFLGSNVVFCQN 120 + MGH PH++LGS TALIGDPTGR+ELR+++ + I +NT+ IKKQI++FLG +V+ +N Sbjct 72 KDMGHTPHIVLGSATALIGDPTGRIELRKILEEKEIVKNTKTIKKQIKQFLG-DVIIHEN 130 Query 121 ETWLKKLNYIEVIRELGPCFSVNKMLATDAFSARWERGLTLMELNYMVLQAYDFYYLNQK 180 + WL+KLNYIEVIRELG FSVNKML+TDAFSARWE+GLTLMELNYM+LQAYDFYYL++ Sbjct 131 KVWLEKLNYIEVIRELGAFFSVNKMLSTDAFSARWEKGLTLMELNYMILQAYDFYYLHKN 190 Query 181 YGVQLQIGGSDQWANILAGADLIRRKTQKQVYGMTTNLLVKANGEKMGKSASGALWLDPQ 240 + V LQIGGSDQWANILAGA+LI+RK V+G+T NLLVKANGEKMGK++SGALWLD Sbjct 191 HNVTLQIGGSDQWANILAGANLIKRKNNASVFGLTANLLVKANGEKMGKTSSGALWLDEN 250 Query 241 KTSPYDFYQYWINLDDASLQKVFLMLTKLDTKAIETLCNLKGAAIKEAKAKLAFELTDAI 300 KTS +DFYQYWINLDD SL+K FLMLT LD K I+ LCNLKG IK+ K LAF +T+ I Sbjct 251 KTSVFDFYQYWINLDDQSLKKTFLMLTMLDKKVIDELCNLKGPKIKQTKQMLAFLITELI 310 Query 301 HGTKAALVAQAKSARIFAFQPDTETKTVRAGTRLVDVIVDLGLVVSRSEARRVIQQGGLT 360 HGTK A AQ +S IF+ QPD + K V+ T L+D +V+ + S+SEARR+I Q GLT Sbjct 311 HGTKKAKEAQQRSELIFSNQPDLDIKLVKTSTNLIDYLVETKFIKSKSEARRLISQKGLT 370 Query 361 INQEKVTDVEMVLQASSQPLVIGKGKKRFVTVQVI 395 IN + V D+ +++ + +I KGKK F+T++ + Sbjct 371 INNKHVLDLNQIIEWKEELQIIRKGKKSFLTIKTV 405 Lambda K H a alpha 0.321 0.135 0.385 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 46133487 Query= gi|13508409|ref|NP_110359.1| hypothetical protein MPN670 [Mycoplasma pneumoniae M129] Length=345 Score E Sequences producing significant alignments: (Bits) Value gi|12045315|ref|NP_073126.1| hypothetical protein MG456 [Mycoplas... 358 1e-125 >gi|12045315|ref|NP_073126.1| hypothetical protein MG456 [Mycoplasma genitalium G-37] Length=334 Score = 358 bits (919), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 181/346 (52%), Positives = 244/346 (71%), Gaps = 15/346 (4%) Query 1 MPELTRFQKFFLTPEKFNKFTRVVGFCGVFALIALSLGIYSYVGQGSIVPKVAALFLIAL 60 M +LT+F KFFLTP K N F RV+G CG+F++IA+S GIYSY +P +A+LFLI L Sbjct 1 MSDLTKFNKFFLTPNKLNAFLRVIGLCGLFSVIAISFGIYSYTRNE--IPNIASLFLIVL 58 Query 61 GGFTLLLSFVINFVALYKRSQLIHLVNRQDRTDLWLQKMANNKQFEQFELFEKGPISADI 120 G L L+FVI+F AL+KR++L+ VN+++RT+LW ++M N K E FE FE+GPIS+DI Sbjct 59 GSVVLFLAFVIHFAALFKRNKLLKKVNKENRTNLWQKEMGNFKAIESFEFFEQGPISSDI 118 Query 121 LPTFYPATIYNFELVPKQFKVQYKNGQTLNFAKLSAIKRSTSKNEKVACLVAIIDAV-SD 179 LP+FYP +YNFE +P+QFKV YK+G F + AIKRS++K EKVACL+AI A+ S+ Sbjct 119 LPSFYPTALYNFEPLPRQFKVTYKDGSEFVFGHIYAIKRSSNKTEKVACLIAITPAINSE 178 Query 180 QHWFLTKSDFPL-INTGFYESLTESNRQNNVLLYTEKDASFNFNQLDKEMIKQVLFNPVN 238 H+FLT +++ L N +E+LTE+ +Q N+ L+ EKD++F+F LD E++ +VLFNP+N Sbjct 179 NHFFLTDANYSLNKNVAQFEALTENKKQENISLFVEKDSNFSFQNLDTEVLNKVLFNPLN 238 Query 239 VYANFNVYNNTTHTYLMMSVPITFMDTSLRMEEAVGDLELNITRQAGYDAATLDSFHKVV 298 VYA FNVYN+T HTYL MSVP TFMDT L++ EA DL NI QA YD TL+S KVV Sbjct 239 VYAKFNVYNDTVHTYLFMSVPTTFMDTKLKVNEAFDDLVTNIKLQASYDFKTLNSMQKVV 298 Query 299 ELLKTKLIGDFNNAETTSATETTVVAEVTEPTTNSKRKPVKAKKAK 344 +LL KLI E+ S+++ +V E+ K VK K AK Sbjct 299 DLLHNKLIKK---PESKSSSQKSVETEI--------EKEVKDKLAK 333 Lambda K H a alpha 0.321 0.134 0.382 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 38788810 Query= gi|13508410|ref|NP_110360.1| cell division protein FtsH [Mycoplasma pneumoniae M129] Length=709 Score E Sequences producing significant alignments: (Bits) Value gi|12045316|ref|NP_073127.1| cell division protein (ftsH) [Mycopl... 1157 0.0 >gi|12045316|ref|NP_073127.1| cell division protein (ftsH) [Mycoplasma genitalium G-37] Length=702 Score = 1157 bits (2993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 580/679 (85%), Positives = 620/679 (91%), Gaps = 10/679 (1%) Query 2 KKNKGLNEATTSEKPQFPKRTAWKIFWWVVILAIIIGILVYILMPRATTAVIEKWELSG- 60 K+NKGL E TT+EK F ++TAWK+FWWV+ILA++IG+L YI PRA TAV+E W+L+G Sbjct 3 KRNKGLVEQTTTEKNNFSRKTAWKVFWWVIILAVVIGVLAYIFSPRAATAVVESWKLNGG 62 Query 61 --TTLSAQIKGLSGKHTFQRINNSTYVTDDILQVSISFQGIN-PIVVTAHKATNGSGETI 117 +TL+A++ G S + TF++IN STYVTD ILQVSI+F G+N P+ VTAHK N +G I Sbjct 63 SNSTLTAKVSGFSNELTFKQINGSTYVTDTILQVSITFDGLNSPLTVTAHKTVNSNGNVI 122 Query 118 FNIANLSINQSTGKAIVN--GMMTQDQKSNNGTELASIKGLHDIGTFVAPDTRARDVLNI 175 FNIANLSINQS G+ VN G M SNN SI G +GTF+APDTRARDVLN Sbjct 123 FNIANLSINQSNGQITVNSNGTMMNGGSSNN---TKSIAGFETLGTFIAPDTRARDVLNG 179 Query 176 FFGLLPIIIFVIFFLLFWRSARGISGGGRSEEDNIFSIGKTQAKLAKSSVRFDNIAGLQE 235 FGLLPIIIFV+FFLLFWRSARGIS GGR EEDNIFSIGKTQAKLAKS+V+F NIAGLQE Sbjct 180 LFGLLPIIIFVVFFLLFWRSARGISAGGR-EEDNIFSIGKTQAKLAKSTVKFTNIAGLQE 238 Query 236 EKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGS 295 EKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGS Sbjct 239 EKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGS 298 Query 296 GFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLL 355 GFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLL Sbjct 299 GFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLL 358 Query 356 AEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKN 415 AEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGIL+VHA+NKN Sbjct 359 AEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAENKN 418 Query 416 LSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMNDIDEAIDRVIAGPAKK 475 LSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTIN+NDIDEAIDRVIAGPAKK Sbjct 419 LSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTININDIDEAIDRVIAGPAKK 478 Query 476 SRVVSDADRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKR 535 SRV+SD DRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKR Sbjct 479 SRVISDEDRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKR 538 Query 536 KSDLLAMIATAMGGRAAEEEIYGPLEITTGASSDFYKATNIARAMVTQLGMSKLGQVQYV 595 KSDLLAMIATAMGGRAAEEEIYG LEITTGASSDFYKATNIARAMVTQLGMSKLGQVQYV Sbjct 539 KSDLLAMIATAMGGRAAEEEIYGNLEITTGASSDFYKATNIARAMVTQLGMSKLGQVQYV 598 Query 596 PSQGTVPPGTKLFSEQTAKDIDFEINAIIEEQYKKARTIIKTNRKELELLVEALLIAETI 655 PSQGT+P KL+SEQTAKDID EIN IIEEQYKKA+TIIK+NRKELELLVEALLIAETI Sbjct 599 PSQGTLPSNVKLYSEQTAKDIDNEINFIIEEQYKKAKTIIKSNRKELELLVEALLIAETI 658 Query 656 LKSDIDYIHEHTKLPPEIL 674 LKSDID+IH++TKLPPEIL Sbjct 659 LKSDIDFIHKNTKLPPEIL 677 Lambda K H a alpha 0.316 0.133 0.369 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 87633752 Query= gi|13508411|ref|NP_110361.1| hypoxanthine-guanine phosphoribosyltransferase [Mycoplasma pneumoniae M129] Length=175 Score E Sequences producing significant alignments: (Bits) Value gi|12045317|ref|NP_073128.1| hypoxanthine-guanine phosphoribosylt... 271 4e-96 >gi|12045317|ref|NP_073128.1| hypoxanthine-guanine phosphoribosyltransferase (hpt) [Mycoplasma genitalium G-37] Length=175 Score = 271 bits (692), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 127/174 (73%), Positives = 151/174 (87%), Gaps = 0/174 (0%) Query 1 MGIKSIIIDQKQVEAGCNAALKWCNEHFAGKQVIVLGILKGCIPFLGKLISQFTFDLQLD 60 MGIKSI+I+++Q+E GC A+ WCN F K+VIVLGILKGCIPFLGK+IS+F+FDLQLD Sbjct 1 MGIKSIVINEQQIEEGCQKAVNWCNAKFNNKKVIVLGILKGCIPFLGKVISKFSFDLQLD 60 Query 61 FVAVASYHGGSRQQEAPKIVLDMSHDPKGKDILLIEDIVDSGRSIKLVLDLLHTRKAKSV 120 F+AVASYHG Q++ PKIVLDMSHDPK KDILLIEDIVDSGRSIKLV+DLL TR AKS+ Sbjct 61 FMAVASYHGSHVQKQPPKIVLDMSHDPKDKDILLIEDIVDSGRSIKLVIDLLKTRHAKSI 120 Query 121 ILVSFIEKLKPREADIKVDYSCFKNQDEFLVGFGLDYQGFYRNLPYVGVFDPED 174 L+S IEK+KP+ DI +D+SCFK +D FLVGFGLDY GFYRNLPYVGVF+P++ Sbjct 121 TLISLIEKIKPKAFDINIDFSCFKVKDNFLVGFGLDYDGFYRNLPYVGVFEPDN 174 Lambda K H a alpha 0.324 0.143 0.427 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15891590 Query= gi|13508412|ref|NP_110362.1| hypothetical protein MPN673 [Mycoplasma pneumoniae M129] Length=169 Score E Sequences producing significant alignments: (Bits) Value gi|12045318|ref|NP_073129.1| hypothetical protein MG459 [Mycoplas... 274 1e-97 >gi|12045318|ref|NP_073129.1| hypothetical protein MG459 [Mycoplasma genitalium G-37] Length=169 Score = 274 bits (701), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 129/169 (76%), Positives = 147/169 (87%), Gaps = 0/169 (0%) Query 1 MQFRVGLGKKKYRIKPRAEQKNKFWIGGVEIEDSKYIYDHDASDDASDVIQLAVADALFG 60 MQ RVGLG KKY IK R E KNKFW+GGV+ E+SKYIYD + SD+ SDVIQLAVADALFG Sbjct 1 MQLRVGLGSKKYHIKLRKESKNKFWLGGVDFENSKYIYDLENSDEVSDVIQLAVADALFG 60 Query 61 ATALGDGQIVFNKEKTQIPLKGNPRKEAPRILARTYNFIRKNWYINNIDITLEIPSQQKM 120 ATALGDG IVFNK K+ + KG +KEAPR+LARTYNFIRKNW INNIDI+LEIP +QK+ Sbjct 61 ATALGDGHIVFNKGKSTVQFKGTAKKEAPRVLARTYNFIRKNWIINNIDISLEIPQEQKV 120 Query 121 DDYKHAIFDFICTALRITELTINLKVREPLNPNEISCLAVVLVERQRLK 169 DDYKHAIF FIC+ALRI+ELTINLKVR+PL+ NEI+CLAVVLVERQ+ K Sbjct 121 DDYKHAIFAFICSALRISELTINLKVRKPLDSNEINCLAVVLVERQKTK 169 Lambda K H a alpha 0.321 0.138 0.405 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15220065 Query= gi|13508413|ref|NP_110363.1| L-lactate dehydrogenase [Mycoplasma pneumoniae M129] Length=312 Score E Sequences producing significant alignments: (Bits) Value gi|12045319|ref|NP_073130.1| L-lactate dehydrogenase (ldh) [Mycop... 533 0.0 >gi|12045319|ref|NP_073130.1| L-lactate dehydrogenase (ldh) [Mycoplasma genitalium G-37] Length=312 Score = 533 bits (1372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 258/312 (83%), Positives = 285/312 (91%), Gaps = 0/312 (0%) Query 1 MKSLKVALIGSGAVGTSFLYAAMSRGLASEYMVIDINEKSQVGNVFDLQDAVPSSPQYSK 60 MK K+A++GSGAVGTSFLYAAM+R L SEYM+IDINEK++VGNVFDLQDA S P + K Sbjct 1 MKGPKIAIVGSGAVGTSFLYAAMTRALGSEYMIIDINEKAKVGNVFDLQDASSSCPNFGK 60 Query 61 VIAGDYKQLKDYDFIFIGAGRPQKQGGETRLQLLEGNVEIMKNIAKAVKESGFKGITLIA 120 V+AG+Y QLKDYDFIFI AGRPQKQGGETRLQLLEGNVEIMK+IAK +K+SGF G+TLIA Sbjct 61 VVAGEYSQLKDYDFIFISAGRPQKQGGETRLQLLEGNVEIMKSIAKEIKKSGFNGVTLIA 120 Query 121 SNPVDIMAYTYLKVTGFEPNKVIGSGTLLDSARLKFAIAEKYGMSSRDVQAYVLGEHGDS 180 SNPVDIM+YTYLKVTGFEPNKVIGSGTLLDSARL++AIA KY MSS+DVQAYV+GEHGDS Sbjct 121 SNPVDIMSYTYLKVTGFEPNKVIGSGTLLDSARLRYAIATKYQMSSKDVQAYVIGEHGDS 180 Query 181 SVSIISSAKIAGLPLKHFSKASDIEKEFAEIDHFIRRRAYEIIERKGATFYGIGEATAEV 240 SVSIISSAKIAGL LKHFSKASDIEKEF EID FIRRRAYEIIERKGATFYGIGEA+A+V Sbjct 181 SVSIISSAKIAGLSLKHFSKASDIEKEFGEIDQFIRRRAYEIIERKGATFYGIGEASADV 240 Query 241 AELILRDTKEVRVVASLINGQYGAKDVMFGTPCVLGRNGVEKILEIELSATEKAGLDKSI 300 AE IL+DTKEVRVVA L+ GQYGAKD+MFGTPCVL R G+EKILEIELS TEK L+ SI Sbjct 241 AEQILKDTKEVRVVAPLLTGQYGAKDMMFGTPCVLSRKGIEKILEIELSNTEKVALENSI 300 Query 301 QVLKDNIKLAKL 312 +VLKDNIKLAKL Sbjct 301 KVLKDNIKLAKL 312 Lambda K H a alpha 0.316 0.135 0.366 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 34375858 Query= gi|13508414|ref|NP_110364.1| hypothetical protein MPN675 [Mycoplasma pneumoniae M129] Length=101 ***** No hits found ***** Lambda K H a alpha 0.319 0.137 0.372 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6357851 Query= gi|13508415|ref|NP_110365.1| hypothetical protein MPN676 [Mycoplasma pneumoniae M129] Length=106 ***** No hits found ***** Lambda K H a alpha 0.326 0.132 0.411 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 6926531 Query= gi|13508416|ref|NP_110366.1| similar to ATPases [Mycoplasma pneumoniae M129] Length=425 Score E Sequences producing significant alignments: (Bits) Value gi|12045320|ref|NP_073131.1| hypothetical protein MG461 [Mycoplas... 678 0.0 >gi|12045320|ref|NP_073131.1| hypothetical protein MG461 [Mycoplasma genitalium G-37] Length=425 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/424 (75%), Positives = 371/424 (88%), Gaps = 0/424 (0%) Query 1 MQQIFFKDPILGEVLFDQQTKWMYELVETEAFRRLRNIKQLGINFHFYPGGVHTRYSHSL 60 MQQ FFKDPILGE++FD+ TKWMYELV T+AF+RLRNIKQLGINFHFYP GVHTRY+HSL Sbjct 1 MQQTFFKDPILGEIIFDENTKWMYELVNTKAFQRLRNIKQLGINFHFYPSGVHTRYAHSL 60 Query 61 GVYELLRRILNTPAFAPIDENKKQTVLVAGLLHDIGHAPHSHAFEIYFAKAPNFKKELFI 120 GVYEL+RRILN+ AF ID+ KKQTVLVAGLLHD+GH PHSHAFEIYFAK P+FKK+LFI Sbjct 61 GVYELIRRILNSSAFLNIDQIKKQTVLVAGLLHDLGHGPHSHAFEIYFAKNPDFKKQLFI 120 Query 121 HEEVTTLFVNSEPIKSILKANQIDPKLVAALIDENKELKPSNYWMRQLISSDLDADRMDY 180 HE+VT++ VNSEPI SILKAN+IDP L+ ALIDEN+ ++P N+WMRQLISSDLD DRMDY Sbjct 121 HEKVTSMLVNSEPIVSILKANKIDPNLIGALIDENQNIQPINWWMRQLISSDLDTDRMDY 180 Query 181 LLRDSYFTGTSHSLIDYQTIIKEMDCVKVKGIYEIFFKDKCLPLIENFLITRHHMYQSIY 240 LLRD+YFTGTSHSL+DYQ+II M+CV +G Y+I F++KCLP IENFLITRHHMYQSIY Sbjct 181 LLRDAYFTGTSHSLVDYQSIINGMECVDNQGTYKIVFQEKCLPFIENFLITRHHMYQSIY 240 Query 241 SDGRSISTELNLWFVFQRIKDLVDKNQFDFNGYKTLEQVCLPLLKNEHFDKKMLPAFVKL 300 SDGRSI+TELNLWFVFQRIK L++++ F+F+ +K +E V PLLKN+ F K +L FVKL Sbjct 241 SDGRSIATELNLWFVFQRIKALIEEDNFNFHNFKNVESVIKPLLKNQLFKKSLLTCFVKL 300 Query 301 DDYVFQSFFVNLYQTTKDKILKKLLDSYLNSLKFEIKFYETKEQRDLDFEKQASKYKDAK 360 DDYVF SF VN ++TTKD ILK LLDSYLN+LKF++KFYE+ E+RDLDFE + +Y+ Sbjct 301 DDYVFHSFLVNTFETTKDAILKTLLDSYLNTLKFQVKFYESCEKRDLDFELKVKEYQTPS 360 Query 361 YFITKFNNQFKGFYEGWSSHKNELKIKTMQNKHTNLSEISMLVKRSNELFFENALYKWAN 420 YFITKFNNQFKGFYEGW+ HKNELKIKT QNK NLSEISMLVKRSNELFFEN+ Y+WAN Sbjct 361 YFITKFNNQFKGFYEGWNKHKNELKIKTSQNKIKNLSEISMLVKRSNELFFENSFYRWAN 420 Query 421 VFYR 424 VFY+ Sbjct 421 VFYQ 424 Lambda K H a alpha 0.323 0.139 0.412 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 49490144 Query= gi|13508417|ref|NP_110367.1| glutamyl-tRNA synthetase [Mycoplasma pneumoniae M129] Length=484 Score E Sequences producing significant alignments: (Bits) Value gi|12045321|ref|NP_073132.1| glutamyl-tRNA synthetase (gltX) [Myc... 749 0.0 >gi|12045321|ref|NP_073132.1| glutamyl-tRNA synthetase (gltX) [Mycoplasma genitalium G-37] Length=484 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/484 (72%), Positives = 425/484 (88%), Gaps = 0/484 (0%) Query 1 MEKIRTRYAPSPTGYLHVGGARTAIFNFLLAKHFNGEFIIRIEDTDTERNVEGGIESQLE 60 MEKIRTRYAPSPTGYLHVGG RTAIFNFLLAKHFNGEFIIRIEDTDTERN++ GI SQ + Sbjct 1 MEKIRTRYAPSPTGYLHVGGTRTAIFNFLLAKHFNGEFIIRIEDTDTERNIKEGINSQFD 60 Query 61 NLRWLGIIPDESIYNPGNYGPYIQSQKLATYKKLAYELVGKGLAYRCFCTKEKLEHERQL 120 NLRWLG+I DES+YNPGNYGPY+QSQKLA YKKLA++L+ K LAYRCFC+KEKLE +R+ Sbjct 61 NLRWLGVIADESVYNPGNYGPYLQSQKLAVYKKLAFDLIEKNLAYRCFCSKEKLESDRKQ 120 Query 121 ALEHHQTPKYLGTCRNLHSKHIQTNLDNQVPFTIRLKINQDAEFAWNDQVRGKITIPGNS 180 A+ +H+TPKYLG CRNLHSK I +L+ PFTIRLKIN +AE++WND VRG+ITIPG++ Sbjct 121 AINNHKTPKYLGHCRNLHSKKITNHLEKNDPFTIRLKINNEAEYSWNDLVRGQITIPGSA 180 Query 181 LTDIVLLKANGIATYNFAVVIDDHDMEITDVLRGAEHISNTAYQLAINQALGYQRIPRFG 240 LTDIV+LKANG+ATYNFAVVIDD+DMEITDVLRGAEHISNTAYQLAI QALG++RIPRFG Sbjct 181 LTDIVILKANGVATYNFAVVIDDYDMEITDVLRGAEHISNTAYQLAIYQALGFKRIPRFG 240 Query 241 HLSVIVDKSGKKLSKRDTKTIQFIEQFKQEGYLPEAVVNFLALLGWNSDFNREFFTINQL 300 HLSVIVD+SGKKLSKRD KT QFIEQFKQ+GYLPEA++NFLALLGW+ +N+EFF + QL Sbjct 241 HLSVIVDESGKKLSKRDEKTTQFIEQFKQQGYLPEALLNFLALLGWHPQYNQEFFNLKQL 300 Query 301 IESFTVNRVVGAPAFFDIKKLQWINAHYIKELSDNAYFNFIDNYLTIDFDYLKNKRKEVS 360 IE+F+++RVV APAFFDIKKLQWINA+YIK+L+DNAYFNFIDNYL + DYLK+K +E+S Sbjct 301 IENFSLSRVVSAPAFFDIKKLQWINANYIKQLTDNAYFNFIDNYLDVKVDYLKDKNREIS 360 Query 361 LLFKNQLAFGIEINQLIKETFAPKLGVQHLSVKHRELFKELQSALQQLSEQLQALPDWTK 420 LLFKNQ+ G++IN+LI+E+FA K+GV++L+ K LFK ++ L+QL++ LQ L +W Sbjct 361 LLFKNQITHGVQINELIRESFATKIGVENLAKKSHILFKNIKLFLEQLAKSLQGLEEWKA 420 Query 421 DNVKSTLTQIGEQFNLKGKKLFMPLRLIFTNKEHGPDLAGIMVLHGKTQVLALLQEFIHA 480 + +K+T+ ++G FNLKGK+LFMP+RLIFTNKEHGPDLA I+ + K + L+++FI+A Sbjct 421 EQIKTTINKVGAVFNLKGKQLFMPIRLIFTNKEHGPDLAHIIEIFDKESAINLIKQFINA 480 Query 481 TNLF 484 TNLF Sbjct 481 TNLF 484 Lambda K H a alpha 0.321 0.138 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 57446330 Query= gi|13508418|ref|NP_110368.1| S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase [Mycoplasma pneumoniae M129] Length=263 Score E Sequences producing significant alignments: (Bits) Value gi|12045322|ref|NP_073133.1| dimethyladenosine transferase [Mycop... 328 3e-116 >gi|12045322|ref|NP_073133.1| dimethyladenosine transferase [Mycoplasma genitalium G-37] Length=259 Score = 328 bits (842), Expect = 3e-116, Method: Compositional matrix adjust. Identities = 157/263 (60%), Positives = 203/263 (77%), Gaps = 4/263 (2%) Query 1 MNSFYPSRKLGQNFTVDQSVIAKTCRLIKSLNPTALIEVGPGKGALTKALLKLQLPYHGI 60 MNSF+PSRKLGQNFTV+ SVI + +K+LNP A++E+G GKGALT LLKL++PY GI Sbjct 1 MNSFFPSRKLGQNFTVNLSVIKRIFAFVKNLNPQAIVEIGVGKGALTNYLLKLKIPYKGI 60 Query 61 ELDKRLAEYLLVNEILTEEQLTIGDALKQNLDQYFPDTIPLLCGNIPYSISSPLIANFLA 120 E+DKRL EYLLV +ILTE+QL GD LK++ + +F + PLLCGNIPYSI+SP+I FL Sbjct 61 EIDKRLIEYLLVEKILTEDQLVKGDILKKDFNSFFENLSPLLCGNIPYSITSPIINKFLE 120 Query 121 SKLQQFVLVCQWEFGQRLVAPVNSPNYSAFGVFCQYHLQIKSVFKIDKVAFKPKPQVDSV 180 SKL+ FVL+ Q EF RL+A VNS +YSAFG FCQY+L I +VFKID+ AFKPKP+VDS Sbjct 121 SKLRSFVLMTQKEFANRLLAKVNSSDYSAFGAFCQYYLTITTVFKIDRHAFKPKPKVDST 180 Query 181 LMLLKKKPQVAYEAHFGRFLKQCFHQRRKLLVNNLKQLLPPTLLTNVLQQQDLAATVRAQ 240 L+LL+K V+Y+ FG FLKQCF+QRRK+L+NNLK L N++Q+Q+L ++RAQ Sbjct 181 LILLEKNKSVSYDFKFGLFLKQCFNQRRKMLINNLKHFFAVDYLLNIIQKQNLKTSIRAQ 240 Query 241 ELTPTQLFRLYLSLKPHLSDGKD 263 EL+P QLF LY ++ +GK+ Sbjct 241 ELSPCQLFNLY----QNICNGKN 259 Lambda K H a alpha 0.322 0.138 0.406 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27651402 Query= gi|13508419|ref|NP_110369.1| hypothetical protein MPN680 [Mycoplasma pneumoniae M129] Length=385 Score E Sequences producing significant alignments: (Bits) Value gi|12045323|ref|NP_073134.1| hypothetical protein MG464 [Mycoplas... 666 0.0 >gi|12045323|ref|NP_073134.1| hypothetical protein MG464 [Mycoplasma genitalium G-37] Length=385 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/385 (89%), Positives = 362/385 (94%), Gaps = 0/385 (0%) Query 1 MPLNLNKKHKELKTTFNPFWSAAVVNEKNGLKNLKKAWGIIFKVLKVAIFIFLTIVGLWG 60 MP+ L + +KE+KTTFNPFWSAAVVNEKN KN KK I KV+KV IFIFLTIVGLWG Sbjct 1 MPIKLAQTNKEIKTTFNPFWSAAVVNEKNNWKNFKKFSAIFIKVIKVFIFIFLTIVGLWG 60 Query 61 CTQTLAQPWTGTNQLLGSGLEIGYNFGTTGDYRYDLQSNNVGPYFTFSDYTLAYGPFYGW 120 CTQTLAQPWTGTNQ+LGSGLEIGY FGTTGDYRYDL SNN GPYFTFSDYTLAYGPFYGW Sbjct 61 CTQTLAQPWTGTNQVLGSGLEIGYKFGTTGDYRYDLISNNFGPYFTFSDYTLAYGPFYGW 120 Query 121 FVWPASQIVLPIMYATRVPLGSGPELGFNMILSLIVLLFLVRLITIVITLNSTLALEKMN 180 FVWPA+QIVLPIMYATRVPLGSG ELGFNMILSLIVLL LVRLITIVITLNSTLALEKMN Sbjct 121 FVWPAAQIVLPIMYATRVPLGSGVELGFNMILSLIVLLLLVRLITIVITLNSTLALEKMN 180 Query 181 EVQGKLAEINAKYKGALDLQSKRNRQMEIMSLYKKHNIKSSASFVQVFVTLPIFLIIYRI 240 EVQGKLAEINAKYKGA+DLQSKRNRQ+EIMSLYKKHNIKSSA+FVQVFVTLPIFLIIYRI Sbjct 181 EVQGKLAEINAKYKGAIDLQSKRNRQLEIMSLYKKHNIKSSAAFVQVFVTLPIFLIIYRI 240 Query 241 VTTLRPIKAIILFNFWDLSKVPLTEIFSNFTSTGWTFIIFLIIVLPVQFISQKLPQIWAS 300 VTTLRPIKAIILFNFWDLSKVPLTEIFSNFT+TGW FIIFL+IVLPVQF+SQKLPQ+WAS Sbjct 241 VTTLRPIKAIILFNFWDLSKVPLTEIFSNFTTTGWPFIIFLVIVLPVQFLSQKLPQVWAS 300 Query 301 KRNENAKAHSQKSIEQLNKTKRMQLIFYFVFAVITAFSAAGVGVYWFLNALFTLLQSYLT 360 KRNENAKAHSQKSIEQLNKTK+MQLIFYFVFA ITAFSAAGVGVYWFLNALFTLLQSYLT Sbjct 301 KRNENAKAHSQKSIEQLNKTKKMQLIFYFVFAAITAFSAAGVGVYWFLNALFTLLQSYLT 360 Query 361 HLFIVKRRTRRRLTYSKLEQMLERE 385 H+FIVKRR +R+ YSKL+ +LERE Sbjct 361 HVFIVKRREKRKQNYSKLDLILERE 385 Lambda K H a alpha 0.326 0.139 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 44158353 Query= gi|13508420|ref|NP_110370.1| RNaseP C5 chain [Mycoplasma pneumoniae M129] Length=118 Score E Sequences producing significant alignments: (Bits) Value gi|12045324|ref|NP_073135.1| ribonuclease P protein component (rn... 140 3e-46 >gi|12045324|ref|NP_073135.1| ribonuclease P protein component (rnpA) [Mycoplasma genitalium G-37] Length=128 Score = 140 bits (353), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 65/114 (57%), Positives = 90/114 (79%), Gaps = 0/114 (0%) Query 1 MSAKTKHHLRDRKVFAALLRSKRRFFSTFLMAYFMPNRVRTWRAAVSISKTKYKLAVERN 60 +S K H LR+RKVF +L+SK RFF TF+ AYF+ N TWR A+SI+KTKYKLAV+RN Sbjct 8 VSVKKSHSLRERKVFTTILQSKTRFFGTFINAYFIKNNHSTWRVAISIAKTKYKLAVQRN 67 Query 61 LIRRQVKAIMREQFCNLNAVDVLVIINQGFLELTFKEKQTIFLNLCQKLQELDA 114 LI+RQ+++I ++ NL D+LVI+N+GF+ELTFKEKQ +FL L ++++E+DA Sbjct 68 LIKRQIRSIFQQISNNLEPWDILVIVNKGFIELTFKEKQKLFLQLLKRIKEVDA 121 Lambda K H a alpha 0.329 0.137 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 8519562 Query= gi|13508421|ref|NP_110371.1| ribosomal protein L34 [Mycoplasma pneumoniae M129] Length=48 Score E Sequences producing significant alignments: (Bits) Value gi|12045325|ref|NP_073136.1| ribosomal protein L34 (rpL34) [Mycop... 82.8 2e-25 >gi|12045325|ref|NP_073136.1| ribosomal protein L34 (rpL34) [Mycoplasma genitalium G-37] Length=48 Score = 82.8 bits (203), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 42/48 (88%), Positives = 44/48 (92%), Gaps = 0/48 (0%) Query 1 MKRTYQPSKLKRAKTHGFLARMATASGRKVLKLRRKKQRAQLTVSSER 48 MKRTYQPSKLKRAKTHGF+ARMATA GRKVL+ RR K RAQLTVSSER Sbjct 1 MKRTYQPSKLKRAKTHGFMARMATAQGRKVLRQRRFKNRAQLTVSSER 48 Lambda K H a alpha 0.319 0.125 0.326 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4297306 Query= gi|13508422|ref|NP_110372.1| ABC transporter subunit [Mycoplasma pneumoniae M129] Length=339 Score E Sequences producing significant alignments: (Bits) Value gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 439 1e-157 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 161 2e-47 gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 142 3e-42 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 84.7 3e-20 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 83.6 5e-20 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 83.2 3e-19 gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 76.6 5e-18 gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 77.8 7e-18 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 75.1 3e-17 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 76.6 3e-17 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 75.5 7e-17 gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-bi... 67.8 2e-14 gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 63.2 8e-13 gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein... 57.8 6e-11 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 439 bits (1128), Expect = 1e-157, Method: Compositional matrix adjust. Identities = 230/327 (70%), Positives = 257/327 (79%), Gaps = 25/327 (8%) Query 13 VWDECVDILENVKANSFKATLE-YYLASDKKTKKAKPAKVKKVKEPKAKAVKPEQVKPTK 71 VW+EC+DIL+NVK+ SF A + Y+ S K K + +K+ + K K K Sbjct 8 VWNECIDILDNVKSPSFSANFDDYFKKSKSKPPKKNKKVLNNIKKAELKLKKKANKKQKA 67 Query 72 TTKAPKPKKPKKQGGLISQWKEKLEAPYRTPYVEQKQGMVISIDKMWKHVHGEDSKEQIA 131 T Y P+ +Q +G+VI+I+KMWK+VH +DSK++I+ Sbjct 68 NTL------------------------YIPPFAQQAKGIVITINKMWKNVHNDDSKQEIS 103 Query 132 ILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCTTEQLLT 191 ILSDVSL+I YGEIVIILG SGSGKTTLLNLIGGYDSISLGSC+VANCPLEKCT+EQLLT Sbjct 104 ILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLLT 163 Query 192 YRKLNLGYVYQRYNLIELLSAYDNIAISQNLIPKEQRHLDIEELAAKLDIKEILYKFPYE 251 YRK NLGYVYQRYNLIELLSAYDNIAISQNLIPK QR LDIEELA KLDIKEILYKFPYE Sbjct 164 YRKNNLGYVYQRYNLIELLSAYDNIAISQNLIPKYQRRLDIEELAEKLDIKEILYKFPYE 223 Query 252 MSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQTILMVTHD 311 MSGGQKQRVAIARAIIKEP+LLLCDEPTGALDSNSAENII LLQ INK YKQTILMVTHD Sbjct 224 MSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYKQTILMVTHD 283 Query 312 ETLTRIANRIIKISDGKIVSNELVRPL 338 +LTRIANRIIKISDGKIVSN+LVRPL Sbjct 284 VSLTRIANRIIKISDGKIVSNQLVRPL 310 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 161 bits (407), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 157/295 (53%), Gaps = 18/295 (6%) Query 53 KVKEPKAKAVKPEQVKPTKTTKAPKPKKPKKQGGLISQWKEKLEAPY-----------RT 101 KV+ + KA + ++K K KKQ L++ W E + + Sbjct 158 KVRTTQLKAQRERELKNLLNKIKLKNLSEKKQEILLNNWFNSNERLFLKNEVKKVNWLNS 217 Query 102 PYVEQKQGMV-----ISIDKMWKHVHGEDSKEQIAILSDVSLEIGYGEIVIILGPSGSGK 156 P +Q+ + I + ++K++ + A+L V L I + ++ILGPSGSGK Sbjct 218 PRQKQQAAQIDDQNIIELKNVYKYITNGITTN--AVLKGVDLAIKSHDFIVILGPSGSGK 275 Query 157 TTLLNLIGGYDSISLGSCVVANCPLEKCTTEQLLTYRKLNLGYVYQRYNLIELLSAYDNI 216 TTLLN+I G D S GS +V + +L +R+ +GY++Q+Y L+ L+ +NI Sbjct 276 TTLLNIISGMDRASSGSVIVNGYNMICLNDRKLTKFRQKYVGYIFQQYGLLPNLTVRENI 335 Query 217 AISQNLIPKEQRHLDIEELAAKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCD 276 I NL P + + I+ L + + + K P E+SGGQ+QRV+IARA K P L+ D Sbjct 336 EIGANLQPDPSKRISIDALLEAVGMDSLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGD 395 Query 277 EPTGALDSNSAENIIALLQAINKEYKQTILMVTHDETLTRIANRIIKISDGKIVS 331 EPTGALD + ++ AI K Y+ T+++VTH+ + +A+ +I ++DGKI S Sbjct 396 EPTGALDLEMTQIVLKQFLAIKKRYQTTMIIVTHNNLIANLADLVIYVADGKIKS 450 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 142 bits (359), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 80/204 (39%), Positives = 127/204 (62%), Gaps = 4/204 (2%) Query 132 ILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCTTEQLLT 191 I + ++L+I GE V+ILG SGSGKT+LL+LI D + G V C+ +L Sbjct 71 ICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNTICCSDAKLTA 130 Query 192 YRKLNLGYVYQRYNLIELLSAYDNIAISQNLIPKEQRHLDIEELAAKLDIKEI-LYKFPY 250 R N+GY++Q+Y L+ L DNI ++ +P ++R + E + + +K + Sbjct 131 LRNKNVGYIFQQYGLLRDLDVDDNIKLA---LPLKKRFNNNLEELLERLELKEHRHKKVH 187 Query 251 EMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQTILMVTH 310 ++SGGQ+QRVAIARA+IKEP++L DEPTGA++ + ++ I+ N++ TI++VTH Sbjct 188 KLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGTTIVIVTH 247 Query 311 DETLTRIANRIIKISDGKIVSNEL 334 +E + +A R+IKI DGKI+ + L Sbjct 248 NEKIVELAKRVIKIHDGKIIVDYL 271 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 84.7 bits (208), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/213 (32%), Positives = 116/213 (54%), Gaps = 20/213 (9%) Query 132 ILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANC-PLEKCTTEQL- 189 +L D++L+I +I ++G SG GK+T + + + ++ + + L K + Sbjct 98 VLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINSGII 157 Query 190 --LTYRKLNLGYVYQRYNLIELLSAYDNIAI--------SQNLIPKEQRHLDIEELAAKL 239 LT R ++G V+Q+ S ++NIA ++N I + R I AA Sbjct 158 NDLTLRT-SVGMVFQKLTPFNF-SIFENIAYGIRAHGIHNKNAINEIVRQALIS--AALW 213 Query 240 D-IKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAIN 298 D +K+ L++ +SGGQ+QR+ IARAI +P +LL DEPT ALDS + +I L+Q + Sbjct 214 DEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALDSIATNSIELLIQQLK 273 Query 299 KEYKQTILMVTHDETLT-RIANRIIKISDGKIV 330 +++ TI++VTH T RI + I +DG+++ Sbjct 274 EKF--TIVIVTHSMAQTIRITDETIFFADGRVI 304 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 83.6 bits (205), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/223 (28%), Positives = 112/223 (50%), Gaps = 21/223 (9%) Query 121 VHGEDSKEQIAILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCP 180 V + I ++ D S +I I+G SGSGK+TL+N G + G V + Sbjct 25 VFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWVKDIY 84 Query 181 LEKCTTEQLLTYRKL----NLGYVYQRYNL----IELLSAYDNIAISQNLIPKEQRHLDI 232 + ++ ++KL ++ + + Y L +E + +A+ Q+ Q+ Sbjct 85 I-GAKQRKIKNFKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQSKYDARQKA--- 140 Query 233 EELAAKLDIKEILYKF----PYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAE 288 A L++ + Y F P+E+SGGQK+RVAIA + EP +L+ DEPT LD Sbjct 141 ---AYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGER 197 Query 289 NIIALLQAINKEYKQTILMVTHD-ETLTRIANRIIKISDGKIV 330 ++ L++ K+ ++T+ M+TH E + +A+ ++ ++ GK+V Sbjct 198 EMMQLIKT-AKQQQRTVFMITHQMENVLEVADVVLVLAKGKLV 239 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 83.2 bits (204), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 63/90 (70%), Gaps = 1/90 (1%) Query 242 KEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEY 301 +E Y++P+E SGGQ+QR+AIARA+I +P+L++ DE ALD + +I +L+ + K++ Sbjct 675 REHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQAQVINILKDLAKKH 734 Query 302 KQTILMVTHDETLTR-IANRIIKISDGKIV 330 T+L + HD ++ + + NR+I + GKIV Sbjct 735 NLTVLFIAHDLSMVQTVCNRLIIMHRGKIV 764 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 76.6 bits (187), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 69/223 (31%), Positives = 109/223 (49%), Gaps = 23/223 (10%) Query 132 ILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSC----VVANCPLEKCTTE 187 +L ++S ++ E V +LG SG GK++LLN + + G V +N K + Sbjct 21 LLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVYFDGVASNKKEYKKLKK 80 Query 188 QLLTYRKLNLGYVYQRYNLIELLSAYDNIAIS--------QNLIPKEQRHLDIEELAA-- 237 Q Y+ Q NLI+ Y+ I S Q LI E + + + LA Sbjct 81 QC--------SYLDQIPNLIDTDYVYEAILRSAKQKLTWLQKLICFEPKWIKDKILAILK 132 Query 238 KLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAI 297 ++++ + + ++S GQKQRV IA+ K P+LLL DEPT LD +A I+ L+ Sbjct 133 EVNLNDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDLITDF 192 Query 298 NKEYKQTILMVTHDETLT-RIANRIIKISDGKIVSNELVRPLS 339 K K T++ VTHD L + + RII + + +V + L L+ Sbjct 193 VKREKITLVFVTHDIDLALKYSTRIIALKNHALVLDRLTEKLT 235 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 77.8 bits (190), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 22/209 (11%) Query 143 GEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVAN-CPLEKCTTEQLLTYRKLNLGYVY 201 +I +I G SGSGKTTL+ +G ++ S G AN C +++ K +GY+ Sbjct 100 NKITVIFGESGSGKTTLIKQLGLFEKPSFGYINCANYCYFANQYQQKITKNFKQKIGYIL 159 Query 202 QRYN--------LIELLSAYDNIAISQNL-IPKEQRHLDIEELAAKLDIKEILYKFPYEM 252 Q+ L E+L+ N+ + + +++LD+ L IK P E+ Sbjct 160 QKAEDQFFCDSILEEVLTGAVNLKLCHKKDVNYAKKYLDLCGLENIPLIKN-----PIEL 214 Query 253 SGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQT--ILMVTH 310 S GQK+R+A+A + + + L+ DEPT LD + N+ +L A+ KQT I++V+H Sbjct 215 SDGQKKRLALASVLAMQVKFLILDEPTVGLDQMAISNLSKMLVAM----KQTTRIVIVSH 270 Query 311 D-ETLTRIANRIIKISDGKIVSNELVRPL 338 D + + A++II + GKI+ V Sbjct 271 DVDFIFETADKIIHLHQGKIIHQTTVNDF 299 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 75.1 bits (183), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 107/208 (51%), Gaps = 8/208 (4%) Query 126 SKEQIAILSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCT 185 S ++ ++ ++S + GE V I+G +GSGK+T+ L+ G G + K Sbjct 17 SYNELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKI----FGKTV 72 Query 186 TEQLLTYRKLNLGYVYQR-YNLIELLSAYDNIA--ISQNLIPKEQRHLDIEELAAKLDIK 242 ++Y + N+G ++Q N ++ D+IA + +++ I+E+ + Sbjct 73 DFDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQTD 132 Query 243 EILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYK 302 + + P+ +SGGQKQRVAIA + P +++ DE T LD + + I + + K+ K Sbjct 133 GFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGK 192 Query 303 QTILMVTHDETLTRIANRIIKISDGKIV 330 ++ +THD A++++ +++GK++ Sbjct 193 -CVISITHDMEEVTKADKVLVMNEGKLI 219 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 76.6 bits (187), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 43/97 (44%), Positives = 62/97 (64%), Gaps = 1/97 (1%) Query 234 ELAAKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIAL 293 E+A KL I +IL K P ++SGGQ+QRVAIARAI++ P+LLL DEP LD+ Sbjct 350 EVANKLAITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSNLDAKLRVQTRQW 409 Query 294 LQAINKEYKQTILMVTHD-ETLTRIANRIIKISDGKI 329 ++ +E + T + VTHD E I++ I+ +S GK+ Sbjct 410 IRQFQQELQITTVFVTHDQEEAMSISDVIVCMSTGKV 446 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 75.5 bits (184), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 37/85 (44%), Positives = 59/85 (69%), Gaps = 1/85 (1%) Query 247 KFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQTIL 306 + P E+SGG KQRVA+AR+++ EP +LL DEP ALD+ +N+ LQ I+K+ T + Sbjct 343 RLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDAKVRKNLQKELQQIHKKSGLTFI 402 Query 307 MVTHD-ETLTRIANRIIKISDGKIV 330 +VTHD E +++RI+ +++G I+ Sbjct 403 LVTHDQEEALVLSDRIVVMNEGNIL 427 Score = 60.1 bits (144), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/85 (38%), Positives = 44/85 (52%), Gaps = 6/85 (7%) Query 133 LSDVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCTTEQLLTY 192 + D+SL I GE + ILGPSG GKTTLL L+ G++ + G V ++ + Sbjct 23 IRDISLNIKKGEFITILGPSGCGKTTLLRLLAGFEDPTYGKIKVNGIDIKD------MAI 76 Query 193 RKLNLGYVYQRYNLIELLSAYDNIA 217 K V+Q Y L L+ Y NIA Sbjct 77 HKRPFATVFQDYALFSHLTVYKNIA 101 >gi|12044931|ref|NP_072741.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Mycoplasma genitalium G-37] Length=402 Score = 67.8 bits (164), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 61/111 (55%), Gaps = 1/111 (1%) Query 226 EQRHLDIEELAAKLDIKEILYKFPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSN 285 E++ L+I + D K+ L FP E SGG +QR+ IA A+ EP L++ DEPT ALD Sbjct 183 EKKTLEILQFIGINDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVT 242 Query 286 SAENIIALLQAINKEYKQTILMVTHDETL-TRIANRIIKISDGKIVSNELV 335 ++ L++ + TI+ ++H+ +L + + + GKIV LV Sbjct 243 IQAKVLTLIKQLRDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLV 293 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 63.2 bits (152), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 91/183 (50%), Gaps = 11/183 (6%) Query 135 DVSLEIGYGEIVIILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCTTEQLLTYRK 194 DVSL + + ILG +G+GK+TL +++ G G + + +++ + ++ Sbjct 25 DVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKIFIGEKQVNFKSSKDAVKHK- 83 Query 195 LNLGYVYQRYNLIELLSAYDNIAISQN-------LIPKEQRHLDIEELAAKLDIKEILYK 247 +G V+Q + LIE + DNI + LI ++ I+ + K I L + Sbjct 84 --IGMVHQHFKLIENYTVLDNIILGNESRFGFLPLINRKVSEAKIKTIMEKYGIFVDLKQ 141 Query 248 FPYEMSGGQKQRVAIARAIIKEPRLLLCDEPTGALDSNSAENIIALLQAINKEYKQTILM 307 ++ GQ+QRV I + + ++ +L+ DEPT L +N + ++ K+ +TI++ Sbjct 142 KVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNFLKIIANF-KKLGKTIVL 200 Query 308 VTH 310 ++H Sbjct 201 ISH 203 >gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=623 Score = 57.8 bits (138), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/153 (33%), Positives = 78/153 (51%), Gaps = 20/153 (13%) Query 148 ILGPSGSGKTTLLNLIGGYDSISLGSCVVANCPLEKCTTEQLLTYRKLNLGYVYQRYNLI 207 I+GP+GSGK+ + N+IGG + G ++ ++ + Y +G V+Q+ L Sbjct 398 IVGPTGSGKSLIANIIGGLYEPNEGEILIGGEKIQSIDS----LYLSEMIGIVFQQNILF 453 Query 208 E-LLSAYDNIAISQNLIPKEQRHLDIEEL---AAKLDIKE-ILYKFP--YE--------- 251 + +S+ I I K Q L E AAK+ + + KF Y+ Sbjct 454 KGTISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTFIEKFSDSYDHNVEQLGKN 513 Query 252 MSGGQKQRVAIARAIIKEPRLLLCDEPTGALDS 284 +SGGQKQRVAIAR +I +PR+L+ D+ ALD+ Sbjct 514 LSGGQKQRVAIARTLITKPRILVFDDSMSALDA 546 Lambda K H a alpha 0.313 0.132 0.368 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 37939420 Query= gi|13508423|ref|NP_110373.1| conserved hypothetical protein, suggestion: membrane transporter component [Mycoplasma pneumoniae M129] Length=1882 Score E Sequences producing significant alignments: (Bits) Value gi|12045327|ref|NP_073138.1| hypothetical protein MG468 [Mycoplas... 2511 0.0 gi|12044916|ref|NP_072726.1| hypothetical protein MG064 [Mycoplas... 109 2e-25 >gi|12045327|ref|NP_073138.1| hypothetical protein MG468 [Mycoplasma genitalium G-37] Length=1783 Score = 2511 bits (6509), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1298/1887 (69%), Positives = 1507/1887 (80%), Gaps = 109/1887 (6%) Query 1 MFSFFKQIFKSLKKFFFLLFGIIFVLFSIIFLETSILQLSNNLVNTYTALVQKTNSSDIV 60 MFSFFKQIFKSLKKFFFLLFGIIFVLFSIIFLETSI+QLSNNLV+TYT LV KTNSSDIV Sbjct 1 MFSFFKQIFKSLKKFFFLLFGIIFVLFSIIFLETSIVQLSNNLVSTYTTLVSKTNSSDIV 60 Query 61 APAIFKESSPVYKTELKEEKRHFSKIKLTEKKINFIWPYQESDFGSDSEKKDSTTKSSDN 120 APAI KE++PVY L + +FSKIK+ +KKIN+++PYQE+DFGSDS + + + + + Sbjct 61 APAILKEANPVYIASLTNDSGYFSKIKIDDKKINYLFPYQENDFGSDSGQSNGSGDNQNK 120 Query 121 N-PRKGDVNDKDKLFLARKRGILKAYGEANIAEKRIYKGLAVSFQNTYSFTGTDQESNNL 179 PRKGDVN+KDKLFLARKRGILKAYGEANIAEKRIYKGLAVSF NT SF G+D + Sbjct 121 TIPRKGDVNEKDKLFLARKRGILKAYGEANIAEKRIYKGLAVSFNNTDSFNGSDISDSIT 180 Query 180 NQNTVSDPQNLIYDKEGNLLGYFVDGLILDGIPLRAGIARFPGDKGKGEDKKTTKKKSEI 239 N++ +SDPQNLIYD GNLLGYF DGLI + I LRAGIARFPGDKGK Sbjct 181 NRHIISDPQNLIYDASGNLLGYFADGLIKETISLRAGIARFPGDKGKST----------- 229 Query 240 KQASSATTVLQPLAAQAKMTDAKETTNNEEPKKDSNVEEQYTTNNKDKVWFKSDETQAGS 299 Q K+T ++T N +P+KDS V Y TNNKDKVWFKSDET+A Sbjct 230 -------------GTQVKITQKQQTNN--DPQKDSTVNSLYKTNNKDKVWFKSDETKA-- 272 Query 300 SSGESETSKLSTSYLFTGGQEAANWFPNLYANVPIVLPISPGSQFWLETNPFKEIIEVFQ 359 + + +S +YLFTGG EAANWFPNLYAN+PI L I PGSQFW + NPFKEI+E FQ Sbjct 273 -----DNTDISANYLFTGGNEAANWFPNLYANIPIDLEIDPGSQFWKDVNPFKEIVEEFQ 327 Query 360 KEKEEKEKQSFSLTFTLDTSKLSHLDKEEFDWLEKQAETISSGSSFGDYNLKKKINSLKS 419 +KE K+ QSF+LTF LD SKL+ LD E+ WLE A+TI++ SSFGD++L+ K+ LK Sbjct 328 TQKESKDNQSFTLTFNLDISKLNKLDNEQLKWLETNAKTIANNSSFGDWDLENKLKQLKK 387 Query 420 FELNINKDWLKNKVKAEKETILDSLPGFSNSDKNTIFSTQSGDAKSGTQSNPSSLIALRS 479 FEL INKDWLK KV++EK+TIL+SLPGFS+SDK+TIF TQ+G ++ + Sbjct 388 FELKINKDWLKKKVESEKDTILNSLPGFSDSDKDTIFKTQNG------------MMVRNN 435 Query 480 SVSFKPQLQQTNVALAQQQQDKQESSADDGVKDPTFSDVQTEFDKIGTENHTPQKNLNNV 539 ++SF+P N+ L Q Q S A +G+ DP FS+VQT ++KI N+TP+K L+ V Sbjct 436 NLSFQPS--SNNLQLVQNQN----SQASNGIADPNFSNVQTAYNKIHQSNNTPEKTLDAV 489 Query 540 YAALLHQWKSIFQEDLVKKVTALLEKYRDAFLKAKALKELEFSRQNLAIATNVSSEESAS 599 YAA+L QW+SIFQEDLVKK LLEKYRD FLKA A +++S+QN+AIA NVSS ESAS Sbjct 490 YAAVLDQWRSIFQEDLVKKTVDLLEKYRDHFLKATAFNNIDYSKQNIAIANNVSSAESAS 549 Query 600 FLVSNKDSQKYNDLSIIEGINFKSWLAK---EKSNPLDMVYGGKSNSEGFLEKVEYEFKP 656 FLVSNKD Q+YNDLS+I+G++ KSWL K +SNPLD +YGG+ + GFL+K++YEFKP Sbjct 550 FLVSNKDEQRYNDLSLIDGVDLKSWLFKPEQNESNPLDTIYGGQDANNGFLQKIDYEFKP 609 Query 657 TQTDEKKKAAAKTTQGTTDSLTQLADASSSSSSSSTGDTKSTSTKFQIYPKLANILAQAQ 716 + + A+ K TQ + STKF IYPKLANI+AQAQ Sbjct 610 STSSGGMTASLKNTQALS----------------------PKSTKFPIYPKLANIIAQAQ 647 Query 717 LPEASSIPDTLTNAIKQWSTLDKKGFEALDDTGKSKAANNYVALLSYFTPEFQDPNELVV 776 LPEA++IP T +A+KQW+ LD GF L + K KAANNY+ALLSYFTP FQDPNEL+ Sbjct 648 LPEATNIPTTALDALKQWTNLDANGFNNLKEEDKRKAANNYLALLSYFTPAFQDPNELIE 707 Query 777 TNRQKLDIPIIFKNGVNPLTLPTDQQSLVVQTPEAHGAVVSQQWLFKHDKEVLPLEGEYS 836 TNRQ L+IPI KNGVNPL LPTDQQ+LVVQTPEAHGAVVSQQWLF+H+KE+LP EGEY+ Sbjct 708 TNRQMLEIPITVKNGVNPLILPTDQQNLVVQTPEAHGAVVSQQWLFRHNKEILPQEGEYA 767 Query 837 WKEALENPKNLPNWLNDLPDKYKFSINGLTFAILGVGESVETGYPVLSTNSPLPNSQDEG 896 WK AL+ P N PNWLNDLPD+YKFSINGLTFAILG+GESVETGYPVLS SPLPN+QDE Sbjct 768 WKTALQTPNNFPNWLNDLPDRYKFSINGLTFAILGIGESVETGYPVLSLQSPLPNTQDEA 827 Query 897 LIFLNEQGYRSVLFAVPAASEENYYAFKSDDIKAKFPGQDPIQVVASKLKGYLNVPDSDL 956 LIF+N+Q YRS+LFAVPAA++ENYYAFKS D+K + QDP+Q +A++L+GYL+VP SDL Sbjct 828 LIFVNDQAYRSILFAVPAANQENYYAFKSTDLK-QHTDQDPVQFIANRLEGYLDVPRSDL 886 Query 957 AFNVKDISKFQYLTTARNYFPDLVQNYLAIASVVIAAFLSILALYLTILLIKSFIKKNQT 1016 AFNVKDISKF YLTTARNYFPDLVQ+YLAI S VIA FL ILALYL ILLIKSFIKKNQT Sbjct 887 AFNVKDISKFNYLTTARNYFPDLVQSYLAIVSTVIAIFLIILALYLIILLIKSFIKKNQT 946 Query 1017 EFSIIRAGGFSTAKFIAGMSVFAGIVALASSFFGVLFAFLLERQVKGIISRYWFIALPAN 1076 EFSIIRAGGFST KFI GMSVFAGIVA+ SSF GVLFAFLLE QVKGII+RYWFIALP N Sbjct 947 EFSIIRAGGFSTTKFIVGMSVFAGIVAIVSSFLGVLFAFLLEGQVKGIINRYWFIALPEN 1006 Query 1077 SFNWISFFGSMLLIFVIFQFISWIAFKQLFSKPVNVLIDQGNETKFSVFLHLLKRKSYTM 1136 SFNW+SFFGS + F +F+FISWIAFKQLFSKPVNVLIDQGNETKFSV LHLLK KS+TM Sbjct 1007 SFNWLSFFGSFFITFFVFEFISWIAFKQLFSKPVNVLIDQGNETKFSVLLHLLKHKSHTM 1066 Query 1137 TPLGKFRVSLIISRLSRLFTYVGLSSIALLLIGIAGTIPQKFGAAQSNTVLNRNFNYRLN 1196 +PL KFRVSLI+SR SRLFTYVGLSS+ALLLIGIAGTIPQKF AAQ++T LNRNFNY+LN Sbjct 1067 SPLTKFRVSLIVSRFSRLFTYVGLSSVALLLIGIAGTIPQKFSAAQTSTSLNRNFNYKLN 1126 Query 1197 LQTPTEQSGWYAIQPYSRFGQTDDSLGIKALYKDKGDQIQQQQQQQQQQGNDKEHPYNLK 1256 LQTPTEQSGWYAIQPYS FG TD++ GIK LY + Q + EHPY Sbjct 1127 LQTPTEQSGWYAIQPYSHFGVTDNNNGIKTLY-----------NESVQANSQNEHPYKPS 1175 Query 1257 ELKISDRGGNPIKH-NGKEIELGNLLLPSFGGAQQLNTDENFFRHASLSKWLIDFPIRVG 1315 LK+ +R PIK +G E+ELGNLLLPS+GGAQQLNTDENFFRHASLSKW+IDFPIRVG Sbjct 1176 NLKLKNRQDQPIKAADGTELELGNLLLPSYGGAQQLNTDENFFRHASLSKWIIDFPIRVG 1235 Query 1316 GANINPWEIVEKSIPKQITQLLSASSDQFLIAVLTDDYFNNLNNNGFLTRNPRTNFIQLD 1375 G+NINPWEIVEKSIPKQITQLLSASSDQFLI+VLTDD+FNNLN NGFL RNPRTN IQLD Sbjct 1236 GSNINPWEIVEKSIPKQITQLLSASSDQFLISVLTDDFFNNLNANGFLIRNPRTNQIQLD 1295 Query 1376 AARVLTQINVFNPGGVKFNEQFLKFLTKVYGDPELSYQDSKLTYGIVPVDPQIEETYTYV 1435 A+RVLT I+VFNPGGVKFN+ FL F+ KVYGD EL+ QDSKL +GIVPVDP IEETYTYV Sbjct 1296 ASRVLTTIDVFNPGGVKFNDSFLSFMLKVYGDFELAKQDSKLNFGIVPVDPAIEETYTYV 1355 Query 1436 QGPFGFKETELNPDSPYTLTGISPDSKFVNLTDSGGNSLRSLISSDSEMNVIVNAGFQYA 1495 +GPFGF+E L+ +SPYTLTGI+P+S FVNL D GNSLR+LISSD EMNVIVNAGFQYA Sbjct 1356 EGPFGFQEDNLDENSPYTLTGINPESSFVNLIDGSGNSLRNLISSDQEMNVIVNAGFQYA 1415 Query 1496 NNTKIGDFIFIQPKNTATRYSEKFLKSPPKTPTVKFRVVGVSTDAFGQELYINQNIANRL 1555 NN IGD+++I+PKNTATRYSEKFLK+P TV F+VVGVSTDAFGQELYINQ+IAN L Sbjct 1416 NNINIGDYVYIKPKNTATRYSEKFLKAPLNNSTVAFKVVGVSTDAFGQELYINQHIANNL 1475 Query 1556 LKLNGFDGRGVIKDVVKDGQSTDDSGGTSSGGGSCGGGSTSSTTKDKYKIEYVKPTGYVP 1615 LKL+G GRG+I+DV+K G S SS D+Y+I+YVKP GYVP Sbjct 1476 LKLSGNQGRGIIRDVIK----------------KTNGQSQSS---DEYEIDYVKPNGYVP 1516 Query 1616 FNGVFSKELNPSLVSKALVLNSNIGVWGNFTDFGNNFTNLVKGKENKIITSILPSDPDIL 1675 FNGVFSKEL PSL++KALVLNS IGVWGNFTDFGNNF NLV+ K +K+ITSILP+DP+I+ Sbjct 1517 FNGVFSKELKPSLLNKALVLNSIIGVWGNFTDFGNNFQNLVRNKLDKVITSILPTDPEII 1576 Query 1676 KQLAKEKGENGVDSMTYENLRKKVIEKYTSEWSSTQSLASGARGIFGDNIMVPALKLDAA 1735 +LA+EK SM YE+LRK+++ KY +EW+S L+ A IFG+NI+ P L +DAA Sbjct 1577 NKLAQEKQIINTTSMNYESLRKELVNKYKTEWNSVNLLSQNASSIFGNNIIAPVLNIDAA 1636 Query 1736 GASAQIIRNNAEVLFNTVNQVDGFLLGTIIPFIFITCVVLGISMLEEMKRIFISLKSIGY 1795 G SAQIIRNNAEVLFNTVNQVD FLLGTIIPFIFITCVVLGISMLEEMKRIFISLK+IGY Sbjct 1637 GTSAQIIRNNAEVLFNTVNQVDAFLLGTIIPFIFITCVVLGISMLEEMKRIFISLKAIGY 1696 Query 1796 KDSQNLVSLLCFFIPAFVLSLLISIAILAGLLVGVQALVFGVAQVFLTNVFEFLPYMVGI 1855 +D QNL+SLL FFIPAFVL+LLISI +LAG+L+G+QA+VF VAQVFLTNVFEFLPYMVGI Sbjct 1697 RDVQNLISLLTFFIPAFVLALLISIGVLAGVLIGIQAVVFNVAQVFLTNVFEFLPYMVGI 1756 Query 1856 VLFGATIFVIGSYFWIKLRSAELKEGF 1882 VLFG TIFVIGSYFWIKLRSAELKEGF Sbjct 1757 VLFGVTIFVIGSYFWIKLRSAELKEGF 1783 >gi|12044916|ref|NP_072726.1| hypothetical protein MG064 [Mycoplasma genitalium G-37] Length=1331 Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 147/603 (24%), Positives = 253/603 (42%), Gaps = 86/603 (14%) Query 777 TNRQK--LDIPIIFKNGVNPLTLPTDQQSL----VVQTPEAHGAVVSQ-QWLFKHD--KE 827 TN+ K D P N LTL + SL V+ P ++ +V+ W ++ KE Sbjct 273 TNQVKNLFDTPSTLTNIGGQLTLQWTENSLTKQIVIFDPSSYETIVAPGNWTYQQQLGKE 332 Query 828 VLPLEGEYSWKEALENPKNLP-----NWLNDLPDKYKFSINGLTFAILGVGESVETGYPV 882 V P + E+ K LP + + KYK SI+ + + ++GVG S + YPV Sbjct 333 VYPDINNW------ESIKKLPLEQFESEFLKIDQKYKISIDNIDYLVIGVGISPDFVYPV 386 Query 883 LSTNSPLPNSQDEGLIFLNEQGYRSVLFAVPAASEENYYAFKSDDIKAKFPGQDPIQVVA 942 S + +PN ++E L ++N+ GY E + +F ++ P + I Sbjct 387 FSASLIVPNIENEQLYYVNQTGY-----------ERTFSSFLTN------PVETAIVARL 429 Query 943 SKLKGYLNVPDS------------DLAFNVKDISKFQYLTTARNYF-PDLVQNYLAIASV 989 L+ LN + A++ D + L AR F P+L+ +A Sbjct 430 INLESDLNTINQWAVENMSWPTNIKAAYSSSDTTNILNLLAARTVFIPNLINTINLVALF 489 Query 990 VIAAFLSILALYLTILLIKSFIKKNQTEFSIIRAGGFSTAKFIAGMSVFAGIVALASSFF 1049 + A L++ A+ ++IL++ S++KKN + I++A G S K + +F I A+ + Sbjct 490 LTIAILTV-AIIVSILILISYLKKNTEQIGILKANGLSGKKINLSLLIFGLIPAIVGAIS 548 Query 1050 GVLFAFLLERQVKGIISRYWFIALPANSFNWISFFGSMLLIFVIFQFISWIAFKQLFSKP 1109 G F + + S YWFI +SF+ + L + +I IS + + K Sbjct 549 GYSFGIGFQDVAIHLFSNYWFIPTATSSFSVVGLLFFSLFVILIMSSISLLVGSIILKKD 608 Query 1110 VNVLIDQGNETKFSVFLHLLKRKSYT-MTPLGKFRVSLIISRLSRLFTYVGLSSIALLLI 1168 V ++ +E K S L L +K + + +FRV+L + +L +SS ++++ Sbjct 609 VVKILKHDSEFKVSR-LGLSSKKLFARFGIMTRFRVALAFNAPWKLVFLTLMSSFTMMIL 667 Query 1169 GIAGTIPQKFGAAQSNTVL-NRNFNYRLNLQTPTEQSGWYAIQPYSRFGQTDDSLGIKAL 1227 ++ F AQS T L N+N Y L + T QSG Q ++ G TD Sbjct 668 NLSFATKDSFENAQSKTNLTNQNHQYEFELASATTQSGLLKWQLFAELGTTD-------- 719 Query 1228 YKDKGDQIQQQQQQQQQQGNDKEHPYNLKELKISDRGGNPIKHNGKEIELGNLLLPSFGG 1287 ++ + + N K + IS+ + N + I N L + G Sbjct 720 ---------KRSESSVKLAN--------KRMDISNVDASKDWKNQQVI---NFLSDASGF 759 Query 1288 AQQLNTDENFFRHASLSKWLIDFPIRVGGANINPWEIVEKSIPKQITQLLSASSDQFLIA 1347 + LN EN + SK +D+ + NPW + E +P + + FL A Sbjct 760 SNDLNYLENIVQ----SKIGLDYSLGFNNIVSNPWRLSETLMPTNQASASNTAFQNFLKA 815 Query 1348 VLT 1350 ++T Sbjct 816 IIT 818 Lambda K H a alpha 0.315 0.133 0.376 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 243220854 Query= gi|13508424|ref|NP_110374.1| sulfate transport ATP-binding protein [Mycoplasma pneumoniae M129] Length=284 Score E Sequences producing significant alignments: (Bits) Value gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein... 437 2e-158 gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein... 204 1e-64 gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein... 161 1e-49 gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein ... 86.7 1e-21 gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-bindi... 74.3 4e-17 gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein... 71.2 2e-16 gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein... 72.0 4e-16 gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-bin... 71.6 7e-16 gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporte... 68.6 7e-15 gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein... 67.4 9e-15 gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein... 65.5 3e-14 gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-bi... 66.6 4e-14 gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein... 63.2 6e-13 gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein... 62.0 1e-12 >gi|12045328|ref|NP_073139.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=284 Score = 437 bits (1124), Expect = 2e-158, Method: Compositional matrix adjust. Identities = 233/284 (82%), Positives = 252/284 (89%), Gaps = 0/284 (0%) Query 1 MSLNAKNKRSLDYCLQWPDFCQSKKASKLIVKLNKKHPKRRHYKDPEAKHYDVLFKGVCK 60 M L K + D L+ DF SKKASKLI KLNKKHPKR+ EAK YD+ FK VCK Sbjct 1 MVLKTKENKKFDIYLKSSDFAVSKKASKLIKKLNKKHPKRKSLNSFEAKKYDIYFKEVCK 60 Query 61 AVTNGITNQLICDHIDLKIAPGEFVVILGKSGSGKTSLLSLISALDRPTSGVSFVCGRST 120 AVTNGI NQLIC+HI+LKI PGEFVVILGKSGSGKTSLLSLISALDRPTSG SFVCG +T Sbjct 61 AVTNGINNQLICNHINLKILPGEFVVILGKSGSGKTSLLSLISALDRPTSGDSFVCGTNT 120 Query 121 ICCNDAQLTSLRNKNVGYIFQQYGLLRDLNVDDNIKLAVPFKKRHNNNLEELLERLELKE 180 ICC+DA+LT+LRNKNVGYIFQQYGLLRDL+VDDNIKLA+P KKR NNNLEELLERLELKE Sbjct 121 ICCSDAKLTALRNKNVGYIFQQYGLLRDLDVDDNIKLALPLKKRFNNNLEELLERLELKE 180 Query 181 HRNKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGT 240 HR+KK+ KLSGGQQQRVAIARALIKEP+ILFGDEPTGAVN+DISKKILQFFVEYNRDKGT Sbjct 181 HRHKKVHKLSGGQQQRVAIARALIKEPKILFGDEPTGAVNIDISKKILQFFVEYNRDKGT 240 Query 241 TIVLVTHNEKIVELAKRVIKIHDGKIVADYLNQRPKTINEINWV 284 TIV+VTHNEKIVELAKRVIKIHDGKI+ DYLNQ PKTI +INWV Sbjct 241 TIVIVTHNEKIVELAKRVIKIHDGKIIVDYLNQNPKTIEQINWV 284 >gi|12044917|ref|NP_072727.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=466 Score = 204 bits (520), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 105/231 (45%), Positives = 153/231 (66%), Gaps = 2/231 (1%) Query 56 KGVCKAVTNGITNQLICDHIDLKIAPGEFVVILGKSGSGKTSLLSLISALDRPTSGVSFV 115 K V K +TNGIT + +DL I +F+VILG SGSGKT+LL++IS +DR +SG V Sbjct 236 KNVYKYITNGITTNAVLKGVDLAIKSHDFIVILGPSGSGKTTLLNIISGMDRASSGSVIV 295 Query 116 CGRSTICCNDAQLTSLRNKNVGYIFQQYGLLRDLNVDDNIKLAVPFKKRHNN--NLEELL 173 G + IC ND +LT R K VGYIFQQYGLL +L V +NI++ + + +++ LL Sbjct 296 NGYNMICLNDRKLTKFRQKYVGYIFQQYGLLPNLTVRENIEIGANLQPDPSKRISIDALL 355 Query 174 ERLELKEHRNKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVE 233 E + + + K +LSGGQQQRV+IARA K P ++FGDEPTGA+++++++ +L+ F+ Sbjct 356 EAVGMDSLQKKLPNELSGGQQQRVSIARAFAKNPLLIFGDEPTGALDLEMTQIVLKQFLA 415 Query 234 YNRDKGTTIVLVTHNEKIVELAKRVIKIHDGKIVADYLNQRPKTINEINWV 284 + TT+++VTHN I LA VI + DGKI + + N PK + EI+W+ Sbjct 416 IKKRYQTTMIIVTHNNLIANLADLVIYVADGKIKSLHRNLNPKQVEEIHWI 466 >gi|12045326|ref|NP_073137.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=311 Score = 161 bits (408), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 88/204 (43%), Positives = 131/204 (64%), Gaps = 4/204 (2%) Query 71 ICDHIDLKIAPGEFVVILGKSGSGKTSLLSLISALDRPTSGVSFVCGRSTICCNDAQLTS 130 I + L+IA GE V+ILG SGSGKT+LL+LI D + G V C QL + Sbjct 104 ILSDVSLQIAYGEIVIILGSSGSGKTTLLNLIGGYDSISLGSCIVANCPLEKCTSEQLLT 163 Query 131 LRNKNVGYIFQQYGLLRDLNVDDNIKLA---VPFKKRHNNNLEELLERLELKEHRNKKIT 187 R N+GY++Q+Y L+ L+ DNI ++ +P K + ++EEL E+L++KE K Sbjct 164 YRKNNLGYVYQRYNLIELLSAYDNIAISQNLIP-KYQRRLDIEELAEKLDIKEILYKFPY 222 Query 188 KLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGTTIVLVTH 247 ++SGGQ+QRVAIARA+IKEP++L DEPTGA++ + ++ I+ N+ TI++VTH Sbjct 223 EMSGGQKQRVAIARAIIKEPKLLLCDEPTGALDSNSAENIINLLQTINKTYKQTILMVTH 282 Query 248 NEKIVELAKRVIKIHDGKIVADYL 271 + + +A R+IKI DGKIV++ L Sbjct 283 DVSLTRIANRIIKISDGKIVSNQL 306 >gi|12045032|ref|NP_072842.1| ABC transporter ATP-binding protein [Mycoplasma genitalium G-37] Length=274 Score = 86.7 bits (213), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/199 (30%), Positives = 109/199 (55%), Gaps = 10/199 (5%) Query 74 HIDLKIAPGEFVVILGKSGSGKTSLLSLISALDRPTSGVSFVCGRSTICCNDAQLTSLRN 133 + + GE+V I+G +GSGK+++ L++ L +P +G + G++ N ++ LRN Sbjct 26 ELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTVDFDN---VSYLRN 82 Query 134 KNVGYIFQQY-GLLRDLNVDDNIKLAVPFKKRHNNNLEELLERLELKEHRNKKITK---- 188 N+G IFQ + V+D+I + K ++ +++ + L+ + I + Sbjct 83 -NIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQTDGFIKQEPHN 141 Query 189 LSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGTTIVLVTHN 248 LSGGQ+QRVAIA L P I+ DE T ++ K I QF V+ + +G ++ +TH+ Sbjct 142 LSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAK-QGKCVISITHD 200 Query 249 EKIVELAKRVIKIHDGKIV 267 + V A +V+ +++GK++ Sbjct 201 MEEVTKADKVLVMNEGKLI 219 >gi|12045272|ref|NP_073083.1| phosphate ABC transporter, ATP-binding protein (pstB) [Mycoplasma genitalium G-37] Length=329 Score = 74.3 bits (181), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 114/217 (53%), Gaps = 24/217 (11%) Query 68 NQLICDHIDLKIAPGEFVVILGKSGSGKTSLLSLISALD------RPTSGVSFVCGR-ST 120 N+ + I+L I + ++GKSG GK++ + ++ L+ R T + F+ ++ Sbjct 95 NKQVLFDINLDIKRNKITALIGKSGCGKSTFIRCLNKLNDLNENTRWTGDIYFLGKNINS 154 Query 121 ICCNDAQLTSLRNKNVGYIFQQYGLLRDLNVDDNIKLAVPFKKRHNNN-LEELLERL--- 176 ND L + +VG +FQ+ + ++ +NI + HN N + E++ + Sbjct 155 GIINDLTLRT----SVGMVFQKLTPF-NFSIFENIAYGIRAHGIHNKNAINEIVRQALIS 209 Query 177 -----ELKEHRNKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFF 231 E+K++ ++ LSGGQQQR+ IARA+ +P +L DEPT A++ I+ ++ Sbjct 210 AALWDEVKDNLHRNANTLSGGQQQRLCIARAIALQPDVLLMDEPTSALD-SIATNSIELL 268 Query 232 VEYNRDKGTTIVLVTHN-EKIVELAKRVIKIHDGKIV 267 ++ ++K TIV+VTH+ + + + I DG+++ Sbjct 269 IQQLKEK-FTIVIVTHSMAQTIRITDETIFFADGRVI 304 >gi|12045145|ref|NP_072956.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=245 Score = 71.2 bits (173), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 109/217 (50%), Gaps = 17/217 (8%) Query 71 ICDHIDLKIAPGEFVVILGKSGSGKTSLLSLISALDRPTSGVSFVCGRST---------- 120 + +I K+ E V +LGKSG GK+SLL+ ++ SG+ + G ++ Sbjct 21 LLQNISFKVMAKENVCLLGKSGVGKSSLLNSVTNTKIVKSGLVYFDGVASNKKEYKKLKK 80 Query 121 ICCNDAQLTSLRNKNVGYIFQQYGLLRDLNVDDNI--KLAVPFKKRHNNNLEELLERLEL 178 C Q+ +L + + Y+++ +LR KL K + + +L+ + L Sbjct 81 QCSYLDQIPNLIDTD--YVYE--AILRSAKQKLTWLQKLICFEPKWIKDKILAILKEVNL 136 Query 179 KEHRNKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDK 238 ++ + I LS GQ+QRV IA+ K P++L DEPT ++ + KI+ ++ + + Sbjct 137 NDYVSCIIKDLSAGQKQRVEIAKLFFKSPKLLLVDEPTTGLDPLTASKIMDLITDFVKRE 196 Query 239 GTTIVLVTHN-EKIVELAKRVIKIHDGKIVADYLNQR 274 T+V VTH+ + ++ + R+I + + +V D L ++ Sbjct 197 KITLVFVTHDIDLALKYSTRIIALKNHALVLDRLTEK 233 >gi|12045159|ref|NP_072970.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=357 Score = 72.0 bits (175), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 12/198 (6%) Query 79 IAPGEFVVILGKSGSGKTSLLSLISALDRPTSGVSFVCGRSTICCNDAQLTSLRN--KNV 136 I P + VI G+SGSGKT+L+ + ++P+ G C N Q +N + + Sbjct 97 IEPNKITVIFGESGSGKTTLIKQLGLFEKPSFGY-INCANYCYFANQYQQKITKNFKQKI 155 Query 137 GYIFQQY--GLLRDLNVDDNIKLAVPFKKRHNNNLEELLERLELKEHRNKKITK----LS 190 GYI Q+ D +++ + AV K H ++ + L+L N + K LS Sbjct 156 GYILQKAEDQFFCDSILEEVLTGAVNLKLCHKKDVNYAKKYLDLCGLENIPLIKNPIELS 215 Query 191 GGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGTTIVLVTHN-E 249 GQ++R+A+A L + + L DEPT ++ + + V + T IV+V+H+ + Sbjct 216 DGQKKRLALASVLAMQVKFLILDEPTVGLDQMAISNLSKMLVAMKQ--TTRIVIVSHDVD 273 Query 250 KIVELAKRVIKIHDGKIV 267 I E A ++I +H GKI+ Sbjct 274 FIFETADKIIHLHQGKII 291 >gi|12044971|ref|NP_072781.1| galactoside ABC transporter, ATP-binding protein (mglA) [Mycoplasma genitalium G-37] Length=564 Score = 71.6 bits (174), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 59/221 (27%), Positives = 115/221 (52%), Gaps = 16/221 (7%) Query 62 VTNGITNQLICDHIDLKIAPGEFVV--ILGKSGSGKTSLLSLISALDRPTSGVSFVCGRS 119 ++ N I ++D+ + E V ILG++G+GK++L S++ L +P SG F+ G Sbjct 11 ISKSFDNGKIKANVDVSLVVYENTVHTILGENGAGKSTLTSILFGLYKPDSGKIFI-GEK 69 Query 120 TICCNDAQLTSLRNKNVGYIFQQYGLLRDLNVDDNIKLA-------VPF--KKRHNNNLE 170 + ++ ++++K +G + Q + L+ + V DNI L +P +K ++ Sbjct 70 QVNFKSSK-DAVKHK-IGMVHQHFKLIENYTVLDNIILGNESRFGFLPLINRKVSEAKIK 127 Query 171 ELLERLELKEHRNKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQF 230 ++E+ + +K++ L+ GQQQRV I + L ++ IL DEPT ++ + L+ Sbjct 128 TIMEKYGIFVDLKQKVSNLTVGQQQRVEILKVLFRDSNILIFDEPTAVLSDLEIQNFLKI 187 Query 231 FVEYNRDKGTTIVLVTHN-EKIVELAKRVIKIHDGKIVADY 270 + + G TIVL++H +I ++A + GK+V + Sbjct 188 IANF-KKLGKTIVLISHKLNEIKQVADTATVLRLGKVVGSF 227 >gi|12044892|ref|NP_072702.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Mycoplasma genitalium G-37] Length=559 Score = 68.6 bits (166), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 36/107 (34%), Positives = 67/107 (63%), Gaps = 1/107 (1%) Query 162 KKRHNNNLEELLERLELKEHRNKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNV 221 K N + +++E + LK ++ +LSGG +QRVA+AR+L+ EP IL DEP A++ Sbjct 321 KAEQNKKVSDVIEMVGLKGKEDRLPDELSGGMKQRVALARSLVVEPEILLLDEPLSALDA 380 Query 222 DISKKILQFFVEYNRDKGTTIVLVTHN-EKIVELAKRVIKIHDGKIV 267 + K + + + ++ G T +LVTH+ E+ + L+ R++ +++G I+ Sbjct 381 KVRKNLQKELQQIHKKSGLTFILVTHDQEEALVLSDRIVVMNEGNIL 427 >gi|12045033|ref|NP_072843.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=304 Score = 67.4 bits (163), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 11/206 (5%) Query 71 ICDHIDLKIAPGEFVVILGKSGSGKTSLLSLISALDRPTSGVSFVCGRSTICCNDAQLTS 130 + D + I+G SGSGK++L++ + L +P G +V I ++ + Sbjct 36 VIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIKPNQGDIWV-KDIYIGAKQRKIKN 94 Query 131 LRN--KNVGYIFQ--QYGLLRDLNVDDNIKLAVPFKKRHNNNLEE---LLERLELK-EHR 182 + K + +FQ +Y L +D D + V + + ++ LE + LK Sbjct 95 FKKLRKTISIVFQFPEYQLFKDTVEKDIMFGPVALGQSKYDARQKAAYYLEMMGLKYPFL 154 Query 183 NKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGTTI 242 + +LSGGQ++RVAIA L EP IL DEPT ++ + ++++Q ++ + + T+ Sbjct 155 ERNPFELSGGQKRRVAIAGILAIEPEILIFDEPTAGLDPEGEREMMQ-LIKTAKQQQRTV 213 Query 243 VLVTHN-EKIVELAKRVIKIHDGKIV 267 ++TH E ++E+A V+ + GK+V Sbjct 214 FMITHQMENVLEVADVVLVLAKGKLV 239 >gi|12045160|ref|NP_072971.1| ABC transporter, ATP binding protein [Mycoplasma genitalium G-37] Length=253 Score = 65.5 bits (158), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/219 (26%), Positives = 103/219 (47%), Gaps = 24/219 (11%) Query 71 ICDHIDLKIAPGEFVVILGKSGSGKTSLLSLISALDRPTSGVSFVCGRSTICCNDAQLTS 130 + + I + G + ++G +GSGK++L+ L+ + G TI ND +LTS Sbjct 1 MLNQISFNVQDGCHLAVIGHNGSGKSTLVKLLGGFLKAKKG--------TIFFNDKELTS 52 Query 131 LRNKNVGYIFQQ--YGLLRD-------LNVDDNIKLAVPFKKRHNNNLEELLERLELKEH 181 + +G + Q LL D ++++ LA K N E+L +ELK+ Sbjct 53 VGFNKIGILLQDPDVQLLADTLHQELIFTLENHGVLASEMDKIIN----EVLTVVELKDK 108 Query 182 RNKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKILQFFVEYNRDKGTT 241 + + KLS G++QR A L +P+I DE ++ IS K+ +F + + + Sbjct 109 QFTPLKKLSFGEKQRAVFACLLAVKPQIYLLDEAFSMLDNKISNKLKKFVFDTIKKQNKI 168 Query 242 IVLVTHNEKIVELAKRVIKIHDGKIVADYLNQRPKTINE 280 ++ +TH+ + LA +I + G ++ + P+ I E Sbjct 169 VINITHDFNDLFLADEIIFLSKGSLIKKF---APEAIYE 204 >gi|12044932|ref|NP_072742.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Mycoplasma genitalium G-37] Length=848 Score = 66.6 bits (161), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 36/103 (35%), Positives = 63/103 (61%), Gaps = 2/103 (2%) Query 167 NNLEELLERLELK-EHRNKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISK 225 N + E L+ + LK EH + + SGGQ+QR+AIARALI +P+++ DE A++V I Sbjct 662 NKVYEALDSVGLKREHAYRYPHEFSGGQRQRIAIARALITKPKLIIADELISALDVSIQA 721 Query 226 KILQFFVEYNRDKGTTIVLVTHNEKIVE-LAKRVIKIHDGKIV 267 +++ + + T++ + H+ +V+ + R+I +H GKIV Sbjct 722 QVINILKDLAKKHNLTVLFIAHDLSMVQTVCNRLIIMHRGKIV 764 >gi|12045040|ref|NP_072850.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=585 Score = 63.2 bits (152), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 64/109 (59%), Gaps = 1/109 (1%) Query 159 VPFKKRHNNNLEELLERLELKEHRNKKITKLSGGQQQRVAIARALIKEPRILFGDEPTGA 218 V K+ N E+ +L + + K+ K+SGGQQQRVAIARA+++ P++L DEP Sbjct 338 VSIKQFINKTALEVANKLAITKILTKRPDKISGGQQQRVAIARAIVRRPKLLLMDEPLSN 397 Query 219 VNVDISKKILQFFVEYNRDKGTTIVLVTHN-EKIVELAKRVIKIHDGKI 266 ++ + + Q+ ++ ++ T V VTH+ E+ + ++ ++ + GK+ Sbjct 398 LDAKLRVQTRQWIRQFQQELQITTVFVTHDQEEAMSISDVIVCMSTGKV 446 >gi|12044864|ref|NP_072674.1| ABC transporter, ATP-binding protein [Mycoplasma genitalium G-37] Length=623 Score = 62.0 bits (149), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/160 (29%), Positives = 77/160 (48%), Gaps = 24/160 (15%) Query 87 ILGKSGSGKTSLLSLISALDRPTSGVSFVCGRSTICCNDAQLTSLRNKNVGYIFQQYGLL 146 I+G +GSGK+ + ++I L P G + G + L+ + +G +FQQ L Sbjct 398 IVGPTGSGKSLIANIIGGLYEPNEGEILIGGEKIQSIDSLYLSEM----IGIVFQQNILF 453 Query 147 RDLNVDDNIKLAVPFKKRHNNN-----------------LEELLERL-ELKEHRNKKITK 188 + + NIK+ + + N + +E+ + +H +++ K Sbjct 454 KG-TISSNIKIGIETRSDWKNQSDLQKNEAMKNAAKIACADTFIEKFSDSYDHNVEQLGK 512 Query 189 -LSGGQQQRVAIARALIKEPRILFGDEPTGAVNVDISKKI 227 LSGGQ+QRVAIAR LI +PRIL D+ A++ KK+ Sbjct 513 NLSGGQKQRVAIARTLITKPRILVFDDSMSALDALTEKKV 552 Lambda K H a alpha 0.320 0.137 0.400 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30644595 Query= gi|13508425|ref|NP_110375.1| chromosomal replication initiator protein DnaA [Mycoplasma pneumoniae M129] Length=439 Score E Sequences producing significant alignments: (Bits) Value gi|12045329|ref|NP_073140.1| chromosomal replication initiator pr... 718 0.0 >gi|12045329|ref|NP_073140.1| chromosomal replication initiator protein (dnaA) [Mycoplasma genitalium G-37] Length=437 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/439 (79%), Positives = 399/439 (91%), Gaps = 2/439 (0%) Query 1 MEQFSAFKLLLKKQYETTLGFYDKYIKNLKRFALKNNVLFVIVDNEFARETLNSNPDIVG 60 MEQF+AFK LLKK YE T+GF+DKYIK++ RF KNNVL ++++NEFAR +LN N +I+ Sbjct 1 MEQFNAFKSLLKKHYEKTIGFHDKYIKDINRFVFKNNVLLILLENEFARNSLNDNSEIIH 60 Query 61 LASKLYDDIRAVRFVNEQDFFINLAKLEEDNRETLYQSSGLSKNFTFKNFVVGDGNRRVY 120 LA LY+ I++V FVNEQDFF NLAKLEE++R+TLYQ+SGLSKN+TF+NFV+ +GN+R Y Sbjct 61 LAESLYEGIKSVNFVNEQDFFFNLAKLEENSRDTLYQNSGLSKNYTFQNFVISEGNKRAY 120 Query 121 EAGVRISETQDADFSPLFIYGETGLGKTHLLQAIGNDKFFHFPNAKVKYVVSSDFAQEVV 180 EAGVR++ETQD +FSPLFIYGETGLGKTHLLQAIGN+KF +FPNA+VKYVVSSDFAQEVV Sbjct 121 EAGVRLAETQDNEFSPLFIYGETGLGKTHLLQAIGNEKFRNFPNARVKYVVSSDFAQEVV 180 Query 181 NAFYQKEKDQGIEKLKAAYESLDLLLIDDTQIFGKKEKTLEILFSIFNNLVSKGKQIVFV 240 +AFYQ+ D+GIEKLK YE+LDL+LIDDTQIFG+KEKTLEILF+IFNNLV KQIV V Sbjct 181 DAFYQR--DKGIEKLKKNYENLDLVLIDDTQIFGRKEKTLEILFNIFNNLVLNKKQIVLV 238 Query 241 SDKTPDELANIDPRMVSRFKSGLLLKIEKHNLSSLCEILAVKLKEKDPNIQITNEAREKA 300 SDK PDEL +ID RM+SRFKSGLLLKIEKHNLSSLCEIL VKLKEKDPNIQITNEAR A Sbjct 239 SDKAPDELIDIDARMISRFKSGLLLKIEKHNLSSLCEILTVKLKEKDPNIQITNEARHDA 298 Query 301 AQISGNDVRSLNGIATKLLFYVKTTKQNLINNDNLKEILFEEFEKFHKKSFDPYLLIENV 360 AQISGNDVR+LNGIATKLLF+ KT+KQNLIN +NLKEILFEEFEKFHKKSFDPYLLIENV Sbjct 299 AQISGNDVRALNGIATKLLFFAKTSKQNLINTENLKEILFEEFEKFHKKSFDPYLLIENV 358 Query 361 CRRFNVPVDSVLSENRKAELVRVRDVCNYILREKYKMQFQQIGKIFKRNHSTVVAAVKRV 420 CRRFNVP+DSVLSENRKAELVRVRDVCNY+LR+KY MQFQQIGKIFKR+HS+V+ AVKRV Sbjct 359 CRRFNVPMDSVLSENRKAELVRVRDVCNYLLRQKYNMQFQQIGKIFKRSHSSVLMAVKRV 418 Query 421 AKMIEKDDSLQDIITSLVI 439 AKMIE D SL+D+ITSLVI Sbjct 419 AKMIENDSSLRDVITSLVI 437 Lambda K H a alpha 0.320 0.137 0.376 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 51458502 Query= gi|13508426|ref|NP_110376.1| hypothetical protein MPN687 [Mycoplasma pneumoniae M129] Length=250 ***** No hits found ***** Lambda K H a alpha 0.312 0.128 0.363 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 26029094 Query= gi|13508427|ref|NP_110377.1| ParA family of ATPases involved in chromosome partition [Mycoplasma pneumoniae M129] Length=270 Score E Sequences producing significant alignments: (Bits) Value gi|12045330|ref|NP_073141.1| soj protein (soj) [Mycoplasma genita... 484 2e-177 >gi|12045330|ref|NP_073141.1| soj protein (soj) [Mycoplasma genitalium G-37] Length=269 Score = 484 bits (1246), Expect = 2e-177, Method: Compositional matrix adjust. Identities = 241/267 (90%), Positives = 255/267 (96%), Gaps = 1/267 (0%) Query 1 MIISFVNNKGGVLKTTMATNVAGSLVKLCPEQRKVILDLDGQGNVSASFGQNPERLNNTL 60 MIISFVNNKGGVLKTTMATNVAGSLVKLCPE+RKVILDLDGQGNVSASFGQNPERLNNTL Sbjct 1 MIISFVNNKGGVLKTTMATNVAGSLVKLCPERRKVILDLDGQGNVSASFGQNPERLNNTL 60 Query 61 IDILLKVPKFNGANSSIEIDDCLLPVYEGLDILPCNFELNFADIDIARKKYKASDIAEIV 120 IDILLKVPKF+G+N+ IEIDDCLL VYEGLDILPCNFELNFADIDI+RKKYKASDIAEIV Sbjct 61 IDILLKVPKFSGSNNFIEIDDCLLSVYEGLDILPCNFELNFADIDISRKKYKASDIAEIV 120 Query 121 KQLTRRYDFVLLDTPPNMATLVSTAMSLSDVIVIPFEPDQYSMLGLMRIVETIDTFKEKN 180 KQL +RY+FVLLDTPPNMATLVSTAMSLSDVIVIPFEPDQYSMLGLMRIVETIDTFKEKN Sbjct 121 KQLAKRYEFVLLDTPPNMATLVSTAMSLSDVIVIPFEPDQYSMLGLMRIVETIDTFKEKN 180 Query 181 PNLKTILVPTKVNMRTRLHNDVIELVKSKAHKNNVAFSEHFVSLTSKSSAAVGYEKLPIS 240 NLKTILVPTKVN+RTRLHN+VI+L K+KA KNNVAFS++FVSLTSKSSAAVGYEKLPIS Sbjct 181 TNLKTILVPTKVNVRTRLHNEVIDLAKTKAKKNNVAFSKNFVSLTSKSSAAVGYEKLPIS 240 Query 241 LVSPTSNKKYQTEYLEITKEILNLVNH 267 LVS S KKY EYLEITKEILNL N+ Sbjct 241 LVSSPS-KKYLNEYLEITKEILNLANY 266 Lambda K H a alpha 0.317 0.134 0.373 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 28649133 Query= gi|13508428|ref|NP_110217.1| Penicillin-binding protein-related factor A, putative recombinase [Mycoplasma pneumoniae M129] Length=172 Score E Sequences producing significant alignments: (Bits) Value gi|12045212|ref|NP_073023.1| hypothetical protein MG352 [Mycoplas... 242 6e-85 >gi|12045212|ref|NP_073023.1| hypothetical protein MG352 [Mycoplasma genitalium G-37] Length=166 Score = 242 bits (617), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 115/168 (68%), Positives = 144/168 (86%), Gaps = 5/168 (3%) Query 1 MISANRGMFLETIVNQTIVRLGDHPDIWLEKRYLPIQPTAFKETRVQGALTAQKKSKTDY 60 MI+ANRGM LETIVNQTI RL DHPDIWLEKR+LPI+P AF+ V G ++ +KSKTDY Sbjct 1 MINANRGMLLETIVNQTIARLKDHPDIWLEKRFLPIKPIAFRHAHVSGNVS--QKSKTDY 58 Query 61 YGVYKGEIYFDFETKQTNKSNFALAQLAEHQLKHLKRINEIGGISFLLIYFQVQDLLYAL 120 YG+YKG +YFDFE KQTNKSNF +AQ+AEHQL HLKRI++IGG+SFLLIYFQ +D ++A Sbjct 59 YGIYKG-MYFDFEAKQTNKSNFPIAQIAEHQLNHLKRIDQIGGVSFLLIYFQTKDQIFAF 117 Query 121 HTKDLLQMIEAQKGKSKTIKRDLIDQKAQKINLIYPGVIDLIDVIENF 168 HTKDLL+ I+ Q +SKTIKR+LI+QK+QK+ L+YPG+IDLI +I++F Sbjct 118 HTKDLLETIKNQ--ESKTIKRELIEQKSQKVPLLYPGIIDLISIIQSF 163 Lambda K H a alpha 0.321 0.138 0.389 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 15458183 Database: Mgenitalium.faa Posted date: Mar 24, 2021 2:11 AM Number of letters in database: 175,929 Number of sequences in database: 484 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40