FastQCFastQC Report
Sat 19 Jul 2014
SRR445816.fastq

Summary

[OK] Basic Statistics

Measure Value
Filename SRR445816.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 56616764
Filtered Sequences 0
Sequence length 36
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 222515 0.39301963637483767 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 3372040 3.0541515 3.323896 24
Produced by FastQC (version 0.10.1)