FastQCFastQC Report
Fri 16 Aug 2019
Trimmomatic on SRR6322567_1 _R1 paired_.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameTrimmomatic on SRR6322567_1 _R1 paired_.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1718252
Sequences flagged as poor quality0
Sequence length1-251
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTTCTTCCCGGATCGTTGAAACCCGCTGCTAGCTATGTGGGCCCA87960.5119155979448882No Hit
GCGGGCAGAACCGTTTTAACCGACGCACGGCATAGCTAACCGGTGGCGCA74130.431426822142503No Hit
GTTCGCGCTTCCTTAACTATCAGTTGACCGAACAGTATCGAGACCTTGGG74090.4311940274185626No Hit
CAATGATATTGCTACTTTAGATGAAAAACAATGAAACAAGTCAAGGAAGA65660.38213253934812824No Hit
CTGCTACATGCGGCTCTACACCCATAGCCGATTTATTTAAAATTCGCTGC52340.3046118962759828No Hit
GCCCAATGATATTGCTACTTTAGATGAAAAACAATGAAACAAGTCAAGGA52050.30292413452741507No Hit
CTCGACATTGCTTTTCGCGCATGCGGTGCACCTCGGAGGCTCGGCTCCGT49270.2867449012135589No Hit
CCTGCATGTAGATCCCTATAAGCCATGTTTTGTTCCAGAACCTGTTCAGG46760.27213703228630026No Hit
CGCTTCCTTAACTATCAGTTGACCGAACAGTATCGAGACCTTGGGACCGG43400.25258227547530865No Hit
CGGGCAGAACCGTTTTAACCGACGCACGGCATAGCTAACCGGTGGCGCAT41030.2387891880818413No Hit
TCTCGACATTGCTTTTCGCGCATGCGGTGCACCTCGGAGGCTCGGCTCCG31840.18530460025653978No Hit
CCGTTTTCTTCCCGGATCGTTGAAACCCGCTGCTAGCTATGTGGGCCCAG30120.1752944271271036No Hit
CGCGCTTCCTTAACTATCAGTTGACCGAACAGTATCGAGACCTTGGGACC29030.16895077089972832No Hit
CTTCTAACTCACACCAAAAAGAGGCGAGATCACATGGCATCATTGAGCAA25020.14561309982470558No Hit
CCCAATGATATTGCTACTTTAGATGAAAAACAATGAAACAAGTCAAGGAA22210.12925927046789412No Hit
CGCCCAATGATATTGCTACTTTAGATGAAAAACAATGAAACAAGTCAAGG22120.12873548233902826No Hit
CCCTGCTACATGCGGCTCTACACCCATAGCCGATTTATTTAAAATTCGCT21390.12448697862711638No Hit
TCGCGCTTCCTTAACTATCAGTTGACCGAACAGTATCGAGACCTTGGGAC19990.11633916328920321No Hit
CGATAAGCGGGCAGAACCGTTTTAACCGACGCACGGCATAGCTAACCGGT18170.10574700334991607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)